<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:33:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736581" ref_strand="+" ref_description="SGN-E736581 [LC06BC12]">
      <seq>atttaaacctctacaaaaattaaattgagattaaaattcacacaaaaataaattttttaaaaaatggacacagagaaccaaagccaattaagcacttggcctggttatgttgattggaaaaataagcctgcacttactaataaacatggtggcttaattcctgcctcctttgtcttagttgtggaggtgttggaaaatttggcatatttggctaatgcaagtaatttggtgttgtatatgtctgagtacatgcatttttcaccatcaaaatcagcaaattctgtgactaattttatgggcacagcatttttattggcacttcttggtggattcttatctgatgcctttgtcactacttattacatctatctcatcagtgcactcattgaatttctggggctagtggtgctcaccatacaggctcgttcggggtcgttgaagccaccaacgtgcgaccttcaagcaactccgaacgtgccttgtgaacaagttcatggtgcacaagctgcaatgttgttcataggactctacctagtggcgttaggcgttggaggtataaagggatcgctgccaccccacggtgctgaacagtttgatgaatcaacaccacaaggaagaaaacaaagatcaagtttcttcaattactttgtgttctgtctctcctttggagctctcattgctgtcacattcgtcgtttgggtggaagacaataagggttggcaatggggattcggaatatcaacgttagctatattcttatcgatcccaatcttccttgctggttcgtcgttctataggaacaagatacctagtggaagccctctcacaacaatcagcaaggttcttattgctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6466" stop="12649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6766" g_stop="6831" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6832" i_stop="6909" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6910" g_stop="7021" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="178" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7022" i_stop="7201" i_length="180">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7202" g_stop="7419" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="396" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7420" i_stop="11903" i_length="4484">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11904" g_stop="12347" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="840" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12348" i_stop="12516" i_length="169">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12517" g_stop="12532" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="856" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E736581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6766" e_stop="6831"/>
          <exon e_start="6910" e_stop="7021"/>
          <exon e_start="7202" e_stop="7419"/>
          <exon e_start="11904" e_stop="12347"/>
          <exon e_start="12517" e_stop="12532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAACCTCTACAAAAATTAAATTGAGATTAAAATTCACACAAAAATAAATTTTTTAAAAAATGGTATGTTTCTATTTTTCTCCTCTTTAATTTTTAATTTTCTTTCATATTTTCATAATTAAACTCTGTTTTGTATTACAGGACACAGAGAACCAAAGCCAATTAAGCACTTGGCCTGGTTATGTTGATTGGAAAAATAAGCCTGCACTTACTAATAAACATGGTGGCTTAATTCCTGCCTCCTTTGTCTTAGGTAAAAAAATTCTTATAATCTTCGATTTTTTTCGATATAACTGATAAAGTTATTGCTATCTGATCAAAATAGAAAAAATACAAATAGATTTTTGTTGTCTGACTTTTTCTTAGACACTGCATATAGCAGAAGCTTAATGTATCGAACTGTAATTGTATTTTTTGTTTTTTTTTTTTATAGTTGTGGAGGTGTTGGAAAATTTGGCATATTTGGCTAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCATCAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTTGTCACTACTTATTACATCTATCTCATCAGTGCACTCATTGAATTTCTGGTATGTTTTTTATTCCTCGTTCAAAGTTTGATATCAGTATTGAATCACTTACACCTCAAGTTAGAAGGTTATATCAATATTGAATTACTTACTCCTCACGTTAGAAGGTTAAAATTCGCTATAATAACATTAATCGTTGATATTTAGAGCTTAATAAAAAATATTTATTACTCTGTCACGATCCTGATTAATTCTGTGTCCTACCACTAGGTATTGGAATTTTTTTTACTTTTAATAATGTTATGATCATGATAATTAATTCAGAACATGTAAAATGGTACTTCTACCGAGAATGTTATAGTTTTATGATTAAATATAATTTGATTTTTGAAATTATTAATTATTTTATATTTGAGATAATTTGTAAATATTTTTTTTTAATGTATTAATTTATAACTGACTGAAGAGCAGGCACGTGGATTTTAATTGGGTGAGACACAAAATGAGCAGAAATTAAGGCAAATGTAGCCAATATTGAATGAAACAAACTTGGGAAATGTGATCAAATAAAGGCAATAACGTTGCCACATTATTTATGCTATCATTTTTAATTTTTAGAAATAAAATAATTTTAGAATCTTTACCTTTCTTTTATTAAATTTATAAGTTTATTGTTTTTTTCTATGGAGTATTCAAAATATAAATGATAGCGTAGTACTTTGACAAACAAAAAGGGAGAAAATAAAAGTCAAATATATTATGTATGTTTACTATTTTATTTTTGTTCTTTCAACTATACTCTATAATCACATTATTTAATTCGTAGAAAATATGAAGGGAGATAGTTTTCAATTAATTAAAAATTAAATATATTTAATATACGAAAATAGTAATAACATATGCAGTATGATGCGTGTACAACGATCACTAAGGGTTACCTGAAACTAGATGAATGAGAAGTCTTGAGTTTAGATTTTGAAAATAAGAAATATCTTAACGAGTCATGTGCTTTGCTTTCTATTGAGCTTTATGATTGTGAATTCAGATTAATCGGGACATTAAACATTGTTTGGAAACAAAATAATTATGTCCTAGTCATCATTCATTATATACTTTAGTTTTATTTATTTTTATGGAGAGATAGTAATGATAAAATTAGTGTTAAAATTGCAACAATTGGTCATGCAACTTGCTTGCAAAGTGATGCAAGTTGACAATTAGTATGACAAAAGATACTTGGGAATTGGTTGCTTTTCTTCTTTTCTATCTTCTCTTGTCTGCTTCTTTTCTCCTCCACCTCTAAGTGGCGTAGCCACGTATAGTTCAGTATGGTCAGTCGAACATTTTTCGTAAAAAAATATATTATATATATAAAATTTTGTATGTAGTATATGAATCAAAAAATTATCTTCGTACATATATATTAGATCTTGAACACCCTTAACGAGATTTCAGGTTTCTTATCGCTGATAATCCCCTCTCCCTCACCCACCCACCCACCCCCACATAGTCCCATCAATCAAACTTGTTAACGAAGAAAATATGGGGAATTAATATTAACCCCATAATGGACCTTTTTTCTTGGTCATTTTTATTCTTTAAAATTCTAAAAGAAATCCCATGAACCATGACTTTGAAAAGAGACCACTTTTGATATGATTCGATTTGTTTTTCTATTTATTTTTATTTTTTTTTAAAAATAAAGTTTAATTTTTTGGCATCGTGGAAAAACTAAAGTTTATAGGATGAAAAAAGATCTTTGTCGAATTAGAATCGATTTTTAGATATTACAATTTTATTTTTTATTTTTTTCTAGTGGAAGATCATATTAAGAATCTAACCTTCCCCACATATATTATTCATGCAACGTACCTAGTTTTGAGTTTGCATTTTCTAGGGTCCCATTACATATATAACTTTTTTTTTTTATTTAAACTACTTTTTGTAGCACTTTACGTTTGTCACTATGTAATATATGGTGACATTAGACTAAGAAATGTATTGCTTTGCCCCTAGGTTTTTAAATTGGCCTATTGGGAAAAAAAGGCGATGTCTGATGTGTATGTCATGCGTTTGAATTTGATTATATAATAGTCTGATATTTAAATCGAGATGTGACGAAAAGACTTATATTCATCGAGTTTTGAACCACATGAACTGGCTTTTGAGAATTTTCTCAATTATGAAATTATAGACTAGAAAAAGATATTAGATAGTATTTGAGGATTCAACGTCGTTAAAATTAGAAGTGGTTTTTAATATAAGGGTATAGTTAAAAATAATTAATTTTTTTTTGTATTGAATCTTTAAAGCGGTGCTTAATTTTGGAGCAATTTATTTTTATAGAGTAAACACTTATTTTAGGACGGAAAGAAAATAAGTAAATTTTTATGGAGAATTTATGTATAGTAGGAAAATTTTGAATTAAATTAGGGGTATTTAGCAAAAAGACAAAAAGGAAAAACTATAAATACAAATAACTATATATAAAAAAAAATGTTGGAAAAGAAATGTAACAACATTGTTTGTTGCATTCAAGTTGTTATTTCATATTAAAGGCAAATACAACTTGACATCTCACATATTACCCTATATATGACTATATACATATATCCTTTTTTTTTATTCATTTTATCAATAAATGGCAAAAAAAATCAATCAAACGGTTTAACTGAATCTCGTTTGTCAGAAAATTATATTTAAGTGAACTTATTTCATGTGTATGTATACAAATTATCGTATCCACTAAACACAAAAGAACATCTTTATGAATTTCTTGAATGCATGATTCAATTCCTACCTCCGCAATTACATTTTTTATGGTACGTAGTAATAATTATCTTATACGTACATATTTTCATTATTTCATCTGATACCTGTTATTTTTTTCGTTCTTCTAGGGATACATCATACATATTTCATGATATATGTTATTTTGGTTTGGTTTGATATTGCATCACCTTTGATTGTAAATATATTATATAGTGGTAGGGCCAATGGAAGTTTTGGATCGACTCTTTCCTTTTTTGGTGTCAATGCCCCATTTTGTTAACTCTATCTCTATGACATGGATTGCAAAGTACAACAAATATTCAACTAGTACTACAATTTTAATTTTAATTTTTTGACTAGTACTACAATATCATACATGTCTTTTTTTTAAAAAAAAACCTAGTTTAGTTTTCCATGATTTTTAGATAAAATCATTTATTTTTATTCGGTAAAAAGACAAAATTCTATAAATAGCATTTATAAATAGTAAACTATAAGCAGACTTTACCTTCAAAGAGTTGTTTCTCCGATAGAACCTGAGCTCATAAAAAATAAAGAAGGAGAAAAGCAAATTAAAGAAGGTACAATAATCGAAGTATAAAAAATAAACACTTAGATATATAACTTTGTTTTATGTAGGTCATGTCTTTATATTACTTACAAGTTTACAACTCACAAACATATCCTTTTGCAAATTTTAAATTAGAAAATTTTCATAAATGGTATTTAAAGTAACAAATGACAATAGGGTTTGCTTCTTTTTTTTTTTAATGGCTAACACTATGGAATATTAACCATAAGTGGTGATAAAAAATAAATTAACTTTTAGGAGGCCTATGTAACAGGTGTGTGGTTTTTAGTAATGTCAATTTTATATTCATTTGGTAAAAGTGCAAAAGAAACTATTAAACTAAACTTATTAATGCTTGATTATACACCTGTTACAAGTAAAAAAAAAAGTGCATAGAATAGTTTAGATTTTGTTTTTTAATGGCCCAAATTATAAGGGGCCACCAAACCTTATATTTTTTTAGGGGTGGGTGGGGTTTTACGTCTGATATTATATTGAATTTTGATTAAAATTCGATTCGCACAAAGAAATCTAATATAAGGGGGTGAATGCGATTTCTAACAAAGATTACTTTGTGTCCAATAGGTTTTAAGTTCGAGAATTATGATTAAGAATGAATATCGTATATCATGTGAACATATTTTTGTCTTATATTTTAATTTTCATTTTGTAACTTTTTATATATATCTGAATTTGGAATGTCAATAAGTGGAGTTAAAAGGAGCAGAGTGTCTCTTTATTCCTGTGACAGCTAGAGAAAGTTCTCCATGACTTTTTTTTATGTGTGAATTGTAATCTAAATTACTCTTATACGCGGAGGTAGGATTTAAAGCTTATAGGTTCGGAACTAAAATTATTAGGTTCGAAATCAATAATTTGTACATATAGGGTTTATGAGTTCGGTGAACTCGTAACCGAAGTGCTAGCTCTGCCTCTGATTGATTCTACTTAGGTCTTAGCATTAATAACATTTGAAATACATATCCTTCCTCATAATGTTCAACCTAACAAATAAAAGGTACCTATACCCGAGGCAGAGTCAGTGAGCCGTGTAATAGCCGATTATTTAGGGACATGACTTGAGTCCCGACAACGTCTTGATCTCTAATTCCACCTTCGTACTACCTAAAAATGAGATTCTTGTCTAATCCGAGTTTTTCCTAAAACAAAATATATGCATAACTCAGGCTGCATTTTGCAGGGGCTAGTGGTGCTCACCATACAGGCTCGTTCGGGGTCGTTGAAGCCACCAACGTGCGACCTTCAAGCAACTCCGAACGTGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCGCTGCCACCCCACGGTGCTGAACAGTTTGATGAATCAACACCACAAGGAAGAAAACAAAGATCAAGTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTCATTGCTGTCACATTCGTCGTTTGGGTGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATATCAACGTTAGCTATATTCTTATCGATCCCAATCTTCCTTGCTGGTTCGTCGTTCTATAGGAACAAGATACCTAGTGGAAGCCCTCTCACAACAATCAGCAAGGTATAGATAGAGTTTCATATCATACGCACTTTGAAACATGTTGCTCGAACTCTTTAAACTTACTCCTAGTGTGTCGGATTCTCCAAACAACATTACTGCAGAGTCCAAGCAACCTAGCTTTAAACTGTACTTTTCTAAACGAGTAATATAATGAATTTTTTTTTCGTAGGTTCTTATTGCTGCCT</genome_strand>
        <mrna_strand>ATTTAAACCTCTACAAAAATTAAATTGAGATTAAAATTCACACAAAAATAAATTTTTTAAAAAATG..............................................................................GACACAGAGAACCAAAGCCAATTAAGCACTTGGCCTGGTTATGTTGATTGGAAAAATAAGCCTGCACTTACTAATAAACATGGTGGCTTAATTCCTGCCTCCTTTGTCTTAG....................................................................................................................................................................................TTGTGGAGGTGTTGGAAAATTTGGCATATTTGGCTAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCATCAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTTGTCACTACTTATTACATCTATCTCATCAGTGCACTCATTGAATTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTAGTGGTGCTCACCATACAGGCTCGTTCGGGGTCGTTGAAGCCACCAACGTGCGACCTTCAAGCAACTCCGAACGTGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCGCTGCCACCCCACGGTGCTGAACAGTTTGATGAATCAACACCACAAGGAAGAAAACAAAGATCAAGTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTCATTGCTGTCACATTCGTCGTTTGGGTGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATATCAACGTTAGCTATATTCTTATCGATCCCAATCTTCCTTGCTGGTTCGTCGTTCTATAGGAACAAGATACCTAGTGGAAGCCCTCTCACAACAATCAGCAAG.........................................................................................................................................................................GTTCTTATTGCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537992" ref_strand="+" ref_description="SGN-E537992 [TUS-56-O2]">
      <seq>caacaatcagcaaggttcttattgctgccttggtgaattcgggtgcatcaagaaactcaactagtgctatagtaagtatgacttcaagcccttctcctccaattccaacgggcaaggaaaatggcgaagattcaaatagaaaagacgttggatcaatgcacactccatcgacaagtcttagctttcttaatcgagctgtttcagatacaccagcttgtagtagtagtgcatttgaatgcacagtgcaacaagtggaagaagttaagattgtgatgaaaatcctcccgattttcgcttgcaccatcatgctcaactgttgtctagctcaactctcaacattctcagtccaacaagcagcctcgatgaacacaaaggtcggttctttaaaagtccctccggcttccctccctgttttccccgtagtattcatcatgatcttagctccagtttacgatcacttcatcatcccatttgctcgtagagtaaccaaaacagaaatgggaatctcacacctccaacgtattggtatcgggctgttcctatccatcgtggcaatggcaatcgcagccctagttgaaatcaaacgtaagagagtagctactgattcaggactcatcgactctgctcaaccattgcctataacattcttttggatcgcgtttcagtacttatttctcgggtcagctgatcttttcgttctagcaggactactagaattctgtttctcagaagcaccagtgagtatgagatcattggcaacatctctctcgtgggcttctttagccatcggatactacctcagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12215" stop="13608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12334" g_stop="12347" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12348" i_stop="12516" i_length="169">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12517" g_stop="13308" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="806" r_length="792" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E537992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12334" e_stop="12347"/>
          <exon e_start="12517" e_stop="13308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATCAGCAAGGTATAGATAGAGTTTCATATCATACGCACTTTGAAACATGTTGCTCGAACTCTTTAAACTTACTCCTAGTGTGTCGGATTCTCCAAACAACATTACTGCAGAGTCCAAGCAACCTAGCTTTAAACTGTACTTTTCTAAACGAGTAATATAATGAATTTTTTTTTCGTAGGTTCTTATTGCTGCCTTGGTGAATTCGGGTGCATCAAGAAACTCAACTAGTGCTATAGTAAGTATGACTTCAAGCCCTTCTCCTCCAATTCCAACGGGCAAGGAAAATGGCGAAGATTCAAATAGAAAAGACGTTGGATCAATGCACACTCCATCGACAAGTCTTAGCTTTCTTAATCGAGCTGTTTCAGATACACCAGCTTGTAGTAGTAGTGCATTTGAATGCACAGTGCAACAAGTGGAAGAAGTTAAGATTGTGATGAAAATCCTCCCGATTTTCGCTTGCACCATCATGCTCAACTGTTGTCTAGCTCAACTCTCAACATTCTCAGTCCAACAAGCAGCCTCGATGAACACAAAGGTCGGTTCTTTAAAAGTCCCTCCGGCTTCCCTCCCTGTTTTCCCCGTAGTATTCATCATGATCTTAGCTCCAGTTTACGATCACTTCATCATCCCATTTGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCG</genome_strand>
        <mrna_strand>CAACAATCAGCAAG.........................................................................................................................................................................GTTCTTATTGCTGCCTTGGTGAATTCGGGTGCATCAAGAAACTCAACTAGTGCTATAGTAAGTATGACTTCAAGCCCTTCTCCTCCAATTCCAACGGGCAAGGAAAATGGCGAAGATTCAAATAGAAAAGACGTTGGATCAATGCACACTCCATCGACAAGTCTTAGCTTTCTTAATCGAGCTGTTTCAGATACACCAGCTTGTAGTAGTAGTGCATTTGAATGCACAGTGCAACAAGTGGAAGAAGTTAAGATTGTGATGAAAATCCTCCCGATTTTCGCTTGCACCATCATGCTCAACTGTTGTCTAGCTCAACTCTCAACATTCTCAGTCCAACAAGCAGCCTCGATGAACACAAAGGTCGGTTCTTTAAAAGTCCCTCCGGCTTCCCTCCCTGTTTTCCCCGTAGTATTCATCATGATCTTAGCTCCAGTTTACGATCACTTCATCATCCCATTTGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267772" ref_strand="+" ref_description="SGN-E267772 [cLEI-12-D10]">
      <seq>aacaatcagcaaggttcttattgctgccttggtgaattcgggtgcatcaagaaactcaactagtgctatagtaagtatgacttcaagcccttctcctccaattccaacgggcaaggaaaatggcgaagattcaaatagaaaagacgttggatcaatgcacactccatcgacaagtcttagctttcttaatcgagctgtttcagatacaccagcttgtagtagtagtgcatttgaatgcacagtgcaacaagtggaagaagttaagattgtgatgaaaatcctcccgattttcgcttgcaccatcatgctcaactgttgtctagctcaactctcaacattctcagtccaacaagcagcctcgatgaacacaaaggtcggttctttaaaagtccctccggcttccctccctgttttccccgtagtattcatcatgatcttagctccagtttacgatcacttcatcatcccatttgctcgtagagtaaccaaaacagaaatgggaatctcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12215" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12335" g_stop="12347" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12348" i_stop="12516" i_length="169">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12517" g_stop="13015" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="512" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E267772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12335" e_stop="12347"/>
          <exon e_start="12517" e_stop="13015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCAGCAAGGTATAGATAGAGTTTCATATCATACGCACTTTGAAACATGTTGCTCGAACTCTTTAAACTTACTCCTAGTGTGTCGGATTCTCCAAACAACATTACTGCAGAGTCCAAGCAACCTAGCTTTAAACTGTACTTTTCTAAACGAGTAATATAATGAATTTTTTTTTCGTAGGTTCTTATTGCTGCCTTGGTGAATTCGGGTGCATCAAGAAACTCAACTAGTGCTATAGTAAGTATGACTTCAAGCCCTTCTCCTCCAATTCCAACGGGCAAGGAAAATGGCGAAGATTCAAATAGAAAAGACGTTGGATCAATGCACACTCCATCGACAAGTCTTAGCTTTCTTAATCGAGCTGTTTCAGATACACCAGCTTGTAGTAGTAGTGCATTTGAATGCACAGTGCAACAAGTGGAAGAAGTTAAGATTGTGATGAAAATCCTCCCGATTTTCGCTTGCACCATCATGCTCAACTGTTGTCTAGCTCAACTCTCAACATTCTCAGTCCAACAAGCAGCCTCGATGAACACAAAGGTCGGTTCTTTAAAAGTCCCTCCGGCTTCCCTCCCTGTTTTCCCCGTAGTATTCATCATGATCTTAGCTCCAGTTTACGATCACTTCATCATCCCATTTGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACC</genome_strand>
        <mrna_strand>AACAATCAGCAAG.........................................................................................................................................................................GTTCTTATTGCTGCCTTGGTGAATTCGGGTGCATCAAGAAACTCAACTAGTGCTATAGTAAGTATGACTTCAAGCCCTTCTCCTCCAATTCCAACGGGCAAGGAAAATGGCGAAGATTCAAATAGAAAAGACGTTGGATCAATGCACACTCCATCGACAAGTCTTAGCTTTCTTAATCGAGCTGTTTCAGATACACCAGCTTGTAGTAGTAGTGCATTTGAATGCACAGTGCAACAAGTGGAAGAAGTTAAGATTGTGATGAAAATCCTCCCGATTTTCGCTTGCACCATCATGCTCAACTGTTGTCTAGCTCAACTCTCAACATTCTCAGTCCAACAAGCAGCCTCGATGAACACAAAGGTCGGTTCTTTAAAAGTCCCTCCGGCTTCCCTCCCTGTTTTCCCCGTAGTATTCATCATGATCTTAGCTCCAGTTTACGATCACTTCATCATCCCATTTGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539092" ref_strand="+" ref_description="SGN-E539092 [TUS-58-K20](-)">
      <seq>tgctcgtagagtaaccaaaacagaaatgggatctcacacctccaaacgtattgtatcgggctgttcctatccatcgtggcaatggcaatcgcagccctagttgaaatcaaacgtaagagagtagctactgattcaggactcatcgactctgctcaaccattgcctataacattcttttggatcgcgtttcagtacttatttctcgggtcagctgatcttttcgttctagcaggactactagaattctgtttctcagaagcaccagtgagtatgagatcattggcaacatctctctcgtgggcttctttagccatcggatactacctcagctcggcgattgtgtctattgtcaaccgtgtaacaggcatttcaacgaacaagccatggctcgcgggtagcagcttgaatcactatcatttggacaggttctactggctaatgtgcatactcagtgcattaaactttatgcactacttattctgggctacaaaatacaagtatacatcactcaaatctagcaagtaacacatgtgaacagagttgtgctgaagaaattttggaatgttaaaacagacgaaatatatgcatagagggacggcccgcgacttatcggaccccctcttgtgtgactcgaagcaagggatttcaacaagggaattcgaaaaaaaatacaagaatgtcataccaatgagtgatcaaacgatgttaagcaattttatcgagccatcctttgtcggtacacttatatgtaaagaatgttgaacaatatataatatttaacaaattttgttttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12675" stop="14072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12975" g_stop="13783" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E539092" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12975" e_stop="13783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCC-AACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTATTTATACGGTA</genome_strand>
        <mrna_strand>TGCTCGTAGAGTAACCAAAACAGAAATGGG-ATCTCACACCTCCAAACGTATT-GTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548164" ref_strand="+" ref_description="SGN-E548164 [TUS-58-K20]">
      <seq>tgctcgtagagtaaccaaaacagaaatgggaatctcacacctccaacgtattggtatcgggctgttcctatccatcgtggcaatggcaatcgcagccctagttgaaatcaaacgtaagagagtagctactgattcaggactcatcgactctgctcaaccattgcctataacattcttttggatcgcgtttcagtacttatttctcgggtcagctgatcttttcgttctagcaggactactagaattctgtttctcagaagcaccagtgagtatgagatcattggcaacatctctctcgtgggcttctttagccatcggatactacctcagctcggcgattgtgtctattgtcaaccgtgtaacaggcatttcaacgaacaagccatggctcgcgggtagcagcttgaatcactatcatttggacaggttctactggctaatgtgcatactcagtgcattaaactttatgcactacttattctgggctacaaaatacaagtatacatcactcaaatctagcaagtaacacatgtgaacagagttgtgctgaagaaattttggaatgttaaaacagacgaaatatatgcatagagggacggcccgcgacttatcggaccccctcttgtgtgactcgaagcaagggatttcaacaagggaattcgaaaaaaaatacaagaatgtcataccaatgagtgatcaaacgatgttaagcaattttatcgagccatcctttgtcggtacacttatatgtaaagaatgttgaaacatatataatatttaacaaaatttgttttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12675" stop="14072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12975" g_stop="13781" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E548164" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12975" e_stop="13781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTATTTATACGG</genome_strand>
        <mrna_strand>TGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAAACATATATAATATTTAACAAAATTTGTTTTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281032" ref_strand="+" ref_description="SGN-E281032 [cLER-7-F2]">
      <seq>aatgggaatctcacacctccaacgtattggtatcgggctgttcctatccatcgtggcaatggcaatcgcagccctagttgaaatcaaacgtaagagagtagctactgattcaggactcatcgactctgctcaaccattgcctataacattcttttggatcgcgtttcagtacttatttctcgggtcagctgatcttttcgttctagcaggactactagaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12699" stop="13521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12999" g_stop="13221" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E281032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12999" e_stop="13221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTC</genome_strand>
        <mrna_strand>AATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537989" ref_strand="+" ref_description="SGN-E537989 [TUS-56-O2](-)">
      <seq>cagaagcaccagtgagtatgagatcattggcaacatctctctcgtgggcttctttagccatcggatactacctcagctcggcgattgtgtctattgtcaaccgtgtaacaggcatttcaacgaacaagccatggctcgcgggtagcagcttgaatcactatcatttggacaggttttactggctaatgtgcatactcagtgcattaaactttatgcactacttattttgggctacaaaatacaagtatacatcactcaaatctagcaagtaacacatgtgaacagagttgtgctgaagaaattttggaatgttaaaacagacgaaatatatgcatagagggacggcccgcgacttattggacccccttttgtgtgactcgaagcaagggatttcaacaagggaattcgaaaaaaaatacaagaatgtcataccaatgagtgatcaaacgatgttaagcaattttatcgagccatcctttgtcggtacacttatatgtaaagaatgttgaacaatatataatatttaacaaattttgttttactatttatacggtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12929" stop="14086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13229" g_stop="13785" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="604"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E537989" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13229" e_stop="13785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTATTTATACGGTATA</genome_strand>
        <mrna_strand>CAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTTTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTTTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATTGGACCCCCTTTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTATTTATACGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738070" ref_strand="+" ref_description="SGN-E738070 [LC12BA11]">
      <seq>ctctacaacactttctttcaacttaactaatggaaatagataatcaaaacaattgggatagctatgttgattggaaaaatagaccagccattaacaatcgtcatggtggcttgcttgctgcctcctttgtgttaggtgttgaggtgttggagaatttggcatttttggcaaatgcaagtaatttggtgttgtatatgtctgagtacatgcatttttcaccaacaaaatcagcaaattctgtgactaattttatgggcacagcatttttattggcacttcttggtggattcttatctgatgccttcttcacaacttattacatttatctcatcagtgcactctttgaatttctgggacttgtaatactcaccatacaagctcgttcgagttcattgaagccaccaaaatgtgatctaaacaagccttgtgaacaagttcatggtgcacaagctgcaatgttgttcataggactctacctagtggcgttaggcgttggaggtataaagggatcactagcaccccacggtgctgaacagttcgatgaatcaacccctcgtgaaagaaagcatagatcaactttcttcaattactttgtgttctgtctctcctttggagctctgattgcagtcacattcgttgtttggatggaagacaataagggttggcaatggggattcggaatctcaacttcagctatatttctctcaatcccgatattcctttctggttcatcattctatcggaacaagatacctcgtggtagccctcttacaacgatcagtaaggttataattgcagctgtattaaattctagttcaaattcatcgaaaaactcaagcacagtcattgcaagtatgacttcaagtcctcctcctccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17198" stop="22566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17498" g_stop="17529" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17530" i_stop="17615" i_length="86">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17616" g_stop="17718" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="135" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17719" i_stop="18088" i_length="370">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18089" g_stop="18306" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="353" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18307" i_stop="21652" i_length="3346">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21653" g_stop="22084" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="785" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22085" i_stop="22171" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22172" g_stop="22266" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="880" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E738070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17498" e_stop="17529"/>
          <exon e_start="17616" e_stop="17718"/>
          <exon e_start="18089" e_stop="18306"/>
          <exon e_start="21653" e_stop="22084"/>
          <exon e_start="22172" e_stop="22266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACAACACTTTCTTTCAACTTAACTAATGGTGAGTTCCTCTTTTATTTTTTCTTCTCTTTTTTTTTTTTTTAATTAACAAATTCTAATTTTTTTTTTGTTTTAAATTTGTTATAGGAAATAGATAATCAAAACAATTGGGATAGCTATGTTGATTGGAAAAATAGACCAGCCATTAACAATCGTCATGGTGGCTTGCTTGCTGCCTCCTTTGTGTTAGGTACATAAATAAATTACTAGCACCATTCTTGAAAAAACAAAAAAACACGATCGATCGATAAAATTATTGTCATGTGACCAGAATGTCACGAATTTTGAGATGTGCAAACAGTTTCTCGTAGAAATATAAGAAAAGACTGTTGTACAATAGATTCTACATAACAGGAGCTTAGTGCATTAGGCACAAGGTCACGAATTTCGAGTTGCATAAACAACCTCTCGCAGAAATGTGTTGTACGATAGATTCTTGTGGTCTGACATAATAGGAGCTTAGTGCACTAGATTGATCGTATCTTTGTCAAAGAATAATTTTTTCCAAATTTTTGAGTAATTTATTTTATTGATGATTTTTTTTTAAATTTTATGATTAGGTGTTGAGGTGTTGGAGAATTTGGCATTTTTGGCAAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCAACAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTCTTCACAACTTATTACATTTATCTCATCAGTGCACTCTTTGAATTTCTGGTAAATCTCAATTTCGATTTCTTATAGACGAAGTCAGGATTTTAATTTTATCAGTTCTGAATCTTTCACATAGACTACTTTAAACGATCATAATAGGTTATAAATAAAACTATTACCACAAATATACTGTTTGAACAAAAATTTACTATAATTCAACCGACAAACACATGTAAGGTACTAGCTCCGTCAATAAAAACGTGAATGGAAGAAAGTCGTAAAATGTGAAAAAAGAGACCACTTGTTTTTTGTGAACTTTGTTTCGTGTCCAATGATTTTTGAACCCACTAAATAAAATTTGATATGATTCGATTTGGTGAAAAAAAAAAAAAAGTTGGCATCGTGGAAAACATTTTTGTAGGATGAAAAAAGCAATGGTTATAAATAGGTGGCCAATTATGTAAGTTAGGATCAGATTTTAGACACATTTTTAGTGGAAGGTTCACACCAATCAAACCTCAACCACATTATTGGTGCACCTAACTAGTTAGGGGTATTTTGGTCTTTAAATATTTCGTAGAAATTATAACACGGAGATTAAATAGTAAAAGAAGTTTTTAGTAAAAATATAATATAATTCAGTAGATTGATGTTTGTTTTGGATCAACAACAGACTAATCCATTAGTAATATAGTCTGTTTTGGTCTAGGTTTTGCATACCTTTAAAACGTATCACTTGAGCCTAGGGCTTCTTATGTACTTAGCTCTCCGTGTTTTATCAACGTGGGATTCACCTGGGGTGTTACATCACCCCCACCCCCACGAGGGATTGATTACGCTCGTGGAAGTTTGTAACATTATTGTGATATATGAGCTTAATTAGTCTGATAGTGATATTGTCGGTTTCGAATATAGATTCACACGATTTTACAACGTGTCGATAGAATCTAAGACTTGCTTTCTTATATACTCAGTGTCACTTTAGATAAATTTTACATATTCGAGCAACTCGAACTTCAGATTTAGGTTCAATCTTAATCAAGTATGTTAGATTCAATGAATTCAAATGTATGAGCTAAGACTAGGAAATCAATCTTAATCAAGATGAGGAGGTAATTAACAAGAAGTTTGACTCAAATTTCAACTACTTCATTTTATCTTCTTACGTCATGCACACATTTCATGGTCTATTTTTATTCGACTTTTTTATGTTTGATATCTTTACTGAAATACCGTTATTTCGACTTTATATCGTGGGGAAATACGTTCTCTATAAGGAATTTTTCTATTATATTTTAAGAAATGAATAGTCTTATCCACTACACCATATTCTTTGATGGTCCGCACCCAGCATCTAATTTTGTTAACGATGAACAAATTCTATGATTAAACAACAATTTAATTTTTTTTGCAAATTCTATTTAGTAGTGGATTAGCATAAAGTCATATTAGTTATAAGTAAATTAACGACTAAATTCATAGCTAAGTTCAAATTTTTTTTTTTTGTGGGTGTATATATAAGTGGATATCAAGATTTAGGATGTCAAATCTTTGACCTAGCAAATCATTCCAATGGATCATTTTTTGAGATCTTAAAATAATACTAAATTTACATAAAATAGTATTCCCTTTATATTATTTTACGTGACACATTTTTTAATTTATCTCAAAAAGATTGTCACTTTACTTTAATTAGAAATAATTTAACTTTAAAATTTTCTTTTACCCTTAATGAAATGAATCTCAATCATATAAAATATCCAAAAATCTTTTTTTTTTTAATATCATATCAAGTTAAAGAATATCACATAAAATAGAACGATGGAACAATATGTTGTACCAAAGAGCTAAAAGGTGTCACTGTTTCTACTTTTTATGTGTAACCCCAAGGGAATATTAACCAAGAATAGTGATTAAAAACTATATAATAAAATATTTTATCAGGACCATGACACAGGTGTGTGGAGTTGAGTATGTGGTGTTAGATCTATGGATTTCTTTAAATAGCCACATACTTTCCATTAAGAAGGAATGTATACACAAAACATTCCATTTTTGTATTTGTATTTTTAAAAAAAGGGCACATGTCACTAACATAGAATTAAGCACAATATATTATTATACACATATCAAAAGTAGAAAATGTGCACTAAAATAGTTTATATTTGTTTGTATATATCACAAGCTTACATGTTGGAAGTGCCATGAATAATGTCCACTATATATGGCCACTTATTCCCTATCTTGGATTTTTTCTTTTTCAAATCCTAGTTTTGTCTTTGTTGCATGTCATGTAAAAATATGTGGCTTCAATTTTTATTAAAATTTGATACAACATAATACTATATCTGTTCCAATTTATGTAATATTTTTAGTTTTTTTGATAGTTAAATAGTGGACTGGAATAACTCGAACTAAATCTAATCACGTAGATCCTTTTCCTCCATGTGCTTTAGTGTTTGATTGATCCACGTGGAAGAATGCCATTGGCTGAGGGCTCTGTTCCTCTATTGTCGCGCACTGACCACTGTAGTCGTGACAGTTATGGCAGCTTTACAGGTCCTCTATCAGATCTCATAGTTTGTTAAATCGTCAAAAGTTCATAATTTAACAAATTCCAAGAGATTATAGGTCTTTCTGCACAACTTCCTACCACGTGATTTTTAAGCTGTTTCTCGTCCCATTTTACCTCCGATTATCATGATTTCACACATGTATATCTGTGCATCTAGAAGTCGATAAATAATATGATCAAACCATCTCAAGTGATATTCAATCTCACCTTATTTTATCCTCGCTCTGAATGAATGTGATCAATTTTTATCTTAGTCGAATAATGTATGTCTTCATCGTGGATACATTGGACTGGAATGACTTGAACTAAATCTAATTACGTAGATCCTTTTCCTCCACGTGCTTTAGTGTTTGATTGATCCACATGGAACACCATTGGTTGAGGGCTCTGTTCCTCTATTGTCGCGCACCGACCACTGTAGTCGTGACAATGGTGGCAGCTTTACAGGTCCCCTATCAGATCTCATAGTTTGTTAAATCGTCAAAAGTTTATAATTTAACAAATTAGGTATTTCTGGACAACTTTTTATCCCATTTTACCTCGATTATCATGATTTCACACATGTATATCTGTGCATCTAAAAGTCGATAAATGATATGATCAAACCATCTCAAGTGATTGAACTCACCTTATTTTATTATGAATGTGATAATTTTTTTTATCTTATCGAATGATGTATGTCTACATCGCGGATATATTGGACTTTAGAGACACAACATTTGCTTCTTATAACATTATTTGTTCTATATAACATGCCCTTTAACTTTGGTTGAATATTTATGATGAATTCATATACTACAAAGTAGTTGATTCTGAAACTTTGAGTGATTACAGGGACTTGTAATACTCACCATACAAGCTCGTTCGAGTTCATTGAAGCCACCAAAATGTGATCTAAACAAGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCACTAGCACCCCACGGTGCTGAACAGTTCGATGAATCAACCCCTCGTGAAAGAAAGCATAGATCAACTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTGATTGCAGTCACATTCGTTGTTTGGATGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATCTCAACTTCAGCTATATTTCTCTCAATCCCGATATTCCTTTCTGGTTCATCATTCTATCGGAACAAGATACCTCGTGGTAGCCCTCTTACAACGATCAGTAAGGTATATAATTTTCAAATAAATTTCTATATCAAGCACGCGTTGAGGTTTATAAAACTCAACAACTTAACCTCATGTTATAATGTGTAGGTTATAATTGCAGCTGTATTAAATTCTAGTTCAAATTCATCGAAAAACTCAAGCACAGTCATTGCAAGTATGACTTCAAGTCCTCCTCCTCCGGT</genome_strand>
        <mrna_strand>CTCTACAACACTTTCTTTCAACTTAACTAATG......................................................................................GAAATAGATAATCAAAACAATTGGGATAGCTATGTTGATTGGAAAAATAGACCAGCCATTAACAATCGTCATGGTGGCTTGCTTGCTGCCTCCTTTGTGTTAG..................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGGTGTTGGAGAATTTGGCATTTTTGGCAAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCAACAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTCTTCACAACTTATTACATTTATCTCATCAGTGCACTCTTTGAATTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGTAATACTCACCATACAAGCTCGTTCGAGTTCATTGAAGCCACCAAAATGTGATCTAAACAAGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCACTAGCACCCCACGGTGCTGAACAGTTCGATGAATCAACCCCTCGTGAAAGAAAGCATAGATCAACTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTGATTGCAGTCACATTCGTTGTTTGGATGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATCTCAACTTCAGCTATATTTCTCTCAATCCCGATATTCCTTTCTGGTTCATCATTCTATCGGAACAAGATACCTCGTGGTAGCCCTCTTACAACGATCAGTAAG.......................................................................................GTTATAATTGCAGCTGTATTAAATTCTAGTTCAAATTCATCGAAAAACTCAAGCACAGTCATTGCAAGTATGACTTCAAGTCCTCCTCCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279973" ref_strand="-" ref_description="SGN-E279973 [cLEL-7-A1](-)">
      <seq>gcacgagcttcgatcgcactgatttcggttcttctaacctctccctccctcacgacagatgcaggtataacgacgaagcaatcaaggtagattgcacagctcactctatcctttacaatgtagccaccaacacgtaccgtccgctcaccgttcaaacggacgtttggtgttctcggggtgccgttaaccctaacggcacccttatacaaacgggcggataccacgccggtgaacgtaaaatacggttattttcaccgtgttttgatgaacaaacttgtgattggacggaacttcaacagaatctcaccgttaaacggtggtattcaactgatcatatacttaccgacggacgtattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28415" stop="27346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28120" g_stop="28057" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28056" i_stop="27940" i_length="117">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27939" g_stop="27646" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="358" r_length="294" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E279973" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279973" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28120" e_stop="28057"/>
          <exon e_start="27939" e_stop="27646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCATCTTCGATCGCACTGATTTCGGTTCTTCTAACCTCTCCCTCCCTCACGACAAATGCAGGTACGTCTGAACTGTCTGATCATCTCATCTCAACAACTCAACATGACTTTTTGCACATACAAAAATCATTTGTAATTAAATATAATTATTTATTTACTTAATTATATTTTCAAACAGGTATAACGACGAAGCAATCAAGGTAGATTGCACAGCTCACTCTATCCTTTACAATGTAGCCACCAACACGTACCGTCCGCTCACCGTTCAAACGGACGTTTGGTGTTCCTCGGGTGCCGTTAACCCTAACGGCACCCTTATACAAACGGGCGGATACCACGCCGGTGAACGTAAAATACGGTTATTTTCACCGTGTTTTGATGAAGAAACTTGTGATTGGACGGAACTTCAACAGAATCTCACCGTTAAACGGTGGTATTCAACTGATCATATACTTCCCGACGGACGTATTAT</genome_strand>
        <mrna_strand>GCACGAGCTTCGATCGCACTGATTTCGGTTCTTCTAACCTCTCCCTCCCTCACGACAGATGCAG.....................................................................................................................GTATAACGACGAAGCAATCAAGGTAGATTGCACAGCTCACTCTATCCTTTACAATGTAGCCACCAACACGTACCGTCCGCTCACCGTTCAAACGGACGTTTGGTGTTCTCGGGGTGCCGTTAACCCTAACGGCACCCTTATACAAACGGGCGGATACCACGCCGGTGAACGTAAAATACGGTTATTTTCACCGTGTTTTGATGAACAAACTTGTGATTGGACGGAACTTCAACAGAATCTCACCGTTAAACGGTGGTATTCAACTGATCATATACTTACCGACGGACGTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544661" ref_strand="+" ref_description="SGN-E544661 [TUS-67-B19](-)">
      <seq>ccgtgttggcaaactacagtgagttgaatggcagactggtcattgacaggagatgctgtcaatcgggaacgagtctgctcagtgcatccttaaatatatcttttgaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggctacttgagacatgaagtattgggtcgtaattgccggtttttaagtggggaagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaacaaccgtgtactgtacatatcttaaattacagaaaagatggaacgtcattttggaattttcttcacatctcaccgatccgaagtgcttcaggaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaacataaacaagtatgttatggtaatttaatttgatcttttcttttcagaaaaaaaaaaaaaaaaaagaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35835" stop="17237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35535" g_stop="35431" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35430" i_stop="35302" i_length="129">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35301" g_stop="35237" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="170" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148">
            <donor d_prob="0.295" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35088" g_stop="35009" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="250" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34814" g_stop="34759" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34668" g_stop="34605" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="370" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32905" g_stop="32596" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="678" r_length="308" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32595" i_stop="32449" i_length="147">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.818" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32448" g_stop="32420" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="707" r_length="29" r_score="0.586"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32419" i_stop="31381" i_length="1039">
            <donor d_prob="0.693" d_score="0.00"/>
            <acceptor a_prob="0.735" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31380" g_stop="31373" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="715" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E544661" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35535" e_stop="35431"/>
          <exon e_start="35301" e_stop="35237"/>
          <exon e_start="35088" e_stop="35009"/>
          <exon e_start="34814" e_stop="34759"/>
          <exon e_start="34668" e_stop="34605"/>
          <exon e_start="32905" e_stop="32596"/>
          <exon e_start="32448" e_stop="32420"/>
          <exon e_start="31380" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAGGTTGGTTCTGATCATTGCATAACATTTAGATAAGAATTGTGTCCATGTTATTTAGGCTCAATCTGTTGGTGGCTGCGTGTTTCCTTTCAGAAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAGGTAATACTTTAAACTAATAGGTACATATTTACTAGCATTGTTTTATGGGATAGAGTGTTGGCCAGTCAAGATTGCCCATGTCCAGAAGATGAATGTAGCAGAGATGAGGATGTCCATTTGTATGTGTGGGCATACTAGGAGAAATATGATTAGGAACGAAGTTATACAATGCAAGGTGGGACTGGCCTCTGTGGCGGACAAAATGAGGAAACGAGACTAATATGGTTTGGGAGGTGCACAGATGTGCCAGTTAGGAGGTGTGGAAGGTTGCTTGAGCAGGAGTTAGGAGAGGTAGAGGTATGCCAAAAAAGAACTGGGTGTGTAGAGGGGTGGGGGAGGTGATTAGTAAGACGTGACACATCTTCATCTTACTGGGAACCCTATCGAAGATTAGGTAAAAGGTTAGTAGGTAGCCGAGTCTGGTCGCCCGTTAGGTGGGTGAGGCAACGGGGCTTGCCACATATCCTTTCTACTTATTATTAGTAGTATTTAGTAATCACATAGTTTCTTGTTCTTCTATGTGTTTATATCATCCATTGCTTCATTTTCCTTTGTTTCTTCAAATTTTGTTGTCATTTTTTCTTCGTGCAATCCTTCTATGAATAATCCCTTTTTAAGTCGTGAGTCTATCAAAGACAATCTCTCTACCCTACAAAGGTGCGGTTAAGGTCTGCATACATCTTTATTTCTATTTTGTATAAGAAGAAAACTGCTTGTTATCTAAACTAGTACTAGTAGAGTTAAATAATCTTTGAATAAACAAGCTCTGTTGTCCCAAGAGTAAGTTGGCCAAAGAGCCAAGACAAGCTTATGTTTCATTAGTTGAGATTGTTCCAAGCCAATTGTAGGTTCACTGGTGTCGTAAAGTAGTGGCATCACCGCTGTCTTTGTCAAGATTATGGTGCTCTAATGATTCCCGCCACCTATCGAGGTGATATATAGTCTATTAACAGAGCATATCCACATGTTTTTCTCAATGTAAACAACTTCTTGACAGGTTCTTTTTCGTTAATACCATGTCCAAATAGAATGAATACATATTCTTAGACATGTCTGTTAGTGTTTCCAGTTTTGCAAAATATGGGGTTATGAATTAAAAATTTATTGATTACCTTTGCATACATTATTCTTCAATCAAGATTCGAGATGCGAATTGGTTCACAGGCATCAGGAGTAATGGATGGACTAAGTTTCTTCTTTGCTCTATATTAGGAGATGTAGATCTGAGATTAGTTCAATGTCTTCTTGAATAACCAAGCTCGAAAAAATTTGAGTTTTTGTCCATAGATTACTACCTAGCCATGATGTTCAAAGAACTTGGCGGAAAAATAGAAGTAGGAAGTGAAACCAGTTGTTATTTGCTTTGTTTAGGTAGTAAATCGAGTAGACGTTTATGTTGGACTCTGTCTCGATCCCAATCCACTTCTCAATATTGGATTTGAGACAGGTCTGAATGAAGCGGCATGAACAATGAGGATTCACATAGTCGACCCCAACTAACTTGCAATCGAGGCCTAGTCGTCCTATTGTTCTTAGAGCTCAGTGACAACTGACAAAGTCACATTAGACACTTTCTGCATAGTTTGTTATTTTTCTGTTACAACACAACTTAGGCTACTTCTACCTACTGCTGTCTGTTGAAAAATTTAGTCCTACTTGAGCTTAACCCGTTGTAGTTCTGTCTCGTTTGGCTGCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAGATATCCGGGTGCCGAATGATCTCTTATAATTACTTATAAATTTTCTTCGTAATAGAGGGAAGTAAGAGAACTAGTTAGTGAGATATATAACTATTTAAAAACATTGCAATTAACTAAGAATTTTGTCGTTGATTGTTGATATTCTGCTCGTAGCTAACAAAATCCGAAAATAACTTCTTGAAGTGACGAATATCCACGCTATAATATTTTATAACACTTTTAAATTAAGTTAAGGATCAAGTAACGAGCATTTATTCACAATTTTAACCAAGTTAGGAACATTCGATAATAGAAACAAGTGAAAAAGCTTTAAACAATTACTTACCAATATAATTCGACAATGTAATAAAACATTACAAACACTTTTTATTTGACTAACAAAAATTTAAACACACATTTGATTTAATTACAACTTTAGTAAAATACTTCCTTAAATTCTCGACAAGTTTTTAATATTTTCATCACTTCTCTAGAGTTTCATGCTTCTATACGAGTTTGAGATCGCTTTCTATGTCATGCGATAGATATAAGGTGTATTTAAGTTTAGCTAGTTAAATATAAAAATGTTTTTAAGATTTTTAATAGTTTAAAGACGAATTACAAAACTAATAATTTAAGCTAACGTAACCTCAATTTTATTTGGTTAACCTAACTAATGAACTTTAGTTTAAACAATTTCACTATGATATCCAAACATATACTAATAACAATATCAAAATTCTTTGCATTATTTTTGTGTAAATAAAAGAAGAAGAAAGCAATTCTTGAGAAAATACAAATGGTTTAATTGTTGCAGCCTGCAGGTAGCTACATACTTGCATTTAATTCAACAATTTTAATAACCATGCTGACCGACAAAAAAATATTAAAGTTTTTAGTGGCCCCTAATTATACAAAAAAAATTTAATTAAGACTAGTTGACTTAAAACTGTCAAAATTAATCATGCCATTTATGGACTTCTTAAAACTATTTAAACCTACACAACTCTAACAAATATCATTGGTAAGTTATGTTATCAAACAAAGAGTTACGATATTGGAGTTTGACTAAATTTAAAATATGCGTTGAAAAGTTCAAAAGTTAGAAAGCAAATGCTTTTTAATAAAAATAACTTTGTAATATAAATAGAATGATCGAGTATTCAAACGTTTAACTCCATATAAAATTCATTAAGAGTTGATTTTATGACATGTAGTGTTATCTATAGAATTGTCAAAAAGGGCAAGCC</genome_strand>
        <mrna_strand>CCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTG.................................................................................................................................AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG....................................................................................................................................................GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG..........................................................................................AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAA-TTTGATCTTTTCTTT-TCAGAAAAAA...................................................................................................................................................AAAAAAAAAAAAGAAAAAAAAAACTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544660" ref_strand="+" ref_description="SGN-E544660 [TUS-67-B18](-)">
      <seq>ttaaatatatcttttgaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggctacttgagacatgaagtattgggtcgtaattgccggtttttaagtggggaagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaacaaccgtgtactgtacatatcttaaattacagaaaagatggaacgtcattttggaattttcttcacatctcaccgatccgaagtgcttcaggaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaacataaacaagtatgttatggtaatttaattttgatcttttctttgtcagaaaaaaaaaaaaaaaaaagaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35602" stop="17237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35446" g_stop="35431" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35430" i_stop="35302" i_length="129">
            <donor d_prob="0.729" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35301" g_stop="35237" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="81" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148">
            <donor d_prob="0.295" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35088" g_stop="35009" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="161" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34814" g_stop="34759" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34668" g_stop="34605" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="281" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32905" g_stop="32596" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="591" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32595" i_stop="32449" i_length="147">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.818" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32448" g_stop="32420" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="620" r_length="29" r_score="0.586"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32419" i_stop="31381" i_length="1039">
            <donor d_prob="0.693" d_score="0.00"/>
            <acceptor a_prob="0.735" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31380" g_stop="31373" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="628" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E544660" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35446" e_stop="35431"/>
          <exon e_start="35301" e_stop="35237"/>
          <exon e_start="35088" e_stop="35009"/>
          <exon e_start="34814" e_stop="34759"/>
          <exon e_start="34668" e_stop="34605"/>
          <exon e_start="32905" e_stop="32596"/>
          <exon e_start="32448" e_stop="32420"/>
          <exon e_start="31380" e_stop="31373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAGGTTGGTTCTGATCATTGCATAACATTTAGATAAGAATTGTGTCCATGTTATTTAGGCTCAATCTGTTGGTGGCTGCGTGTTTCCTTTCAGAAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAGGTAATACTTTAAACTAATAGGTACATATTTACTAGCATTGTTTTATGGGATAGAGTGTTGGCCAGTCAAGATTGCCCATGTCCAGAAGATGAATGTAGCAGAGATGAGGATGTCCATTTGTATGTGTGGGCATACTAGGAGAAATATGATTAGGAACGAAGTTATACAATGCAAGGTGGGACTGGCCTCTGTGGCGGACAAAATGAGGAAACGAGACTAATATGGTTTGGGAGGTGCACAGATGTGCCAGTTAGGAGGTGTGGAAGGTTGCTTGAGCAGGAGTTAGGAGAGGTAGAGGTATGCCAAAAAAGAACTGGGTGTGTAGAGGGGTGGGGGAGGTGATTAGTAAGACGTGACACATCTTCATCTTACTGGGAACCCTATCGAAGATTAGGTAAAAGGTTAGTAGGTAGCCGAGTCTGGTCGCCCGTTAGGTGGGTGAGGCAACGGGGCTTGCCACATATCCTTTCTACTTATTATTAGTAGTATTTAGTAATCACATAGTTTCTTGTTCTTCTATGTGTTTATATCATCCATTGCTTCATTTTCCTTTGTTTCTTCAAATTTTGTTGTCATTTTTTCTTCGTGCAATCCTTCTATGAATAATCCCTTTTTAAGTCGTGAGTCTATCAAAGACAATCTCTCTACCCTACAAAGGTGCGGTTAAGGTCTGCATACATCTTTATTTCTATTTTGTATAAGAAGAAAACTGCTTGTTATCTAAACTAGTACTAGTAGAGTTAAATAATCTTTGAATAAACAAGCTCTGTTGTCCCAAGAGTAAGTTGGCCAAAGAGCCAAGACAAGCTTATGTTTCATTAGTTGAGATTGTTCCAAGCCAATTGTAGGTTCACTGGTGTCGTAAAGTAGTGGCATCACCGCTGTCTTTGTCAAGATTATGGTGCTCTAATGATTCCCGCCACCTATCGAGGTGATATATAGTCTATTAACAGAGCATATCCACATGTTTTTCTCAATGTAAACAACTTCTTGACAGGTTCTTTTTCGTTAATACCATGTCCAAATAGAATGAATACATATTCTTAGACATGTCTGTTAGTGTTTCCAGTTTTGCAAAATATGGGGTTATGAATTAAAAATTTATTGATTACCTTTGCATACATTATTCTTCAATCAAGATTCGAGATGCGAATTGGTTCACAGGCATCAGGAGTAATGGATGGACTAAGTTTCTTCTTTGCTCTATATTAGGAGATGTAGATCTGAGATTAGTTCAATGTCTTCTTGAATAACCAAGCTCGAAAAAATTTGAGTTTTTGTCCATAGATTACTACCTAGCCATGATGTTCAAAGAACTTGGCGGAAAAATAGAAGTAGGAAGTGAAACCAGTTGTTATTTGCTTTGTTTAGGTAGTAAATCGAGTAGACGTTTATGTTGGACTCTGTCTCGATCCCAATCCACTTCTCAATATTGGATTTGAGACAGGTCTGAATGAAGCGGCATGAACAATGAGGATTCACATAGTCGACCCCAACTAACTTGCAATCGAGGCCTAGTCGTCCTATTGTTCTTAGAGCTCAGTGACAACTGACAAAGTCACATTAGACACTTTCTGCATAGTTTGTTATTTTTCTGTTACAACACAACTTAGGCTACTTCTACCTACTGCTGTCTGTTGAAAAATTTAGTCCTACTTGAGCTTAACCCGTTGTAGTTCTGTCTCGTTTGGCTGCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAGATATCCGGGTGCCGAATGATCTCTTATAATTACTTATAAATTTTCTTCGTAATAGAGGGAAGTAAGAGAACTAGTTAGTGAGATATATAACTATTTAAAAACATTGCAATTAACTAAGAATTTTGTCGTTGATTGTTGATATTCTGCTCGTAGCTAACAAAATCCGAAAATAACTTCTTGAAGTGACGAATATCCACGCTATAATATTTTATAACACTTTTAAATTAAGTTAAGGATCAAGTAACGAGCATTTATTCACAATTTTAACCAAGTTAGGAACATTCGATAATAGAAACAAGTGAAAAAGCTTTAAACAATTACTTACCAATATAATTCGACAATGTAATAAAACATTACAAACACTTTTTATTTGACTAACAAAAATTTAAACACACATTTGATTTAATTACAACTTTAGTAAAATACTTCCTTAAATTCTCGACAAGTTTTTAATATTTTCATCACTTCTCTAGAGTTTCATGCTTCTATACGAGTTTGAGATCGCTTTCTATGTCATGCGATAGATATAAGGTGTATTTAAGTTTAGCTAGTTAAATATAAAAATGTTTTTAAGATTTTTAATAGTTTAAAGACGAATTACAAAACTAATAATTTAAGCTAACGTAACCTCAATTTTATTTGGTTAACCTAACTAATGAACTTTAGTTTAAACAATTTCACTATGATATCCAAACATATACTAATAACAATATCAAAATTCTTTGCATTATTTTTGTGTAAATAAAAGAAGAAGAAAGCAATTCTTGAGAAAATACAAATGGTTTAATTGTTGCAGCCTGCAGGTAGCTACATACTTGCATTTAATTCAACAATTTTAATAACCATGCTGACCGACAAAAAAATATTAAAGTTTTTAGTGGCCCCTAATTATACAAAAAAAATTTAATTAAGACTAGTTGACTTAAAACTGTCAAAATTAATCATGCCATTTATGGACTTCTTAAAACTATTTAAACCTACACAACTCTAACAAATATCATTGGTAAGTTATGTTATCAAACAAAGAGTTACGATATTGGAGTTTGACTAAATTTAAAATATGCGTTGAAAAGTTCAAAAGTTAGAAAGCAAATGCTTTTTAATAAAAATAACTTTGTAATATAAATAGAATGATCGAGTATTCAAACGTTTAACTCCATATAAAATTCATTAAGAGTTGATTTTATGACATGTAGTGTTATCTATAGAATTGTCAAAAAGGGCAAGCC</genome_strand>
        <mrna_strand>TTAAATATATCTTTTG.................................................................................................................................AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG....................................................................................................................................................GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG..........................................................................................AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAGAAAAAA...................................................................................................................................................AAAAAAAAAAAAGAAAAAAAAAACTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544526" ref_strand="+" ref_description="SGN-E544526 [TUS-66-O12](-)">
      <seq>cagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggtgctaaagctgtagctaatttacactagacattccatgggatgttctcattgtttatgggtttgggtctatttcttgtgttcataaaagagcatgagggcttactctaactaatatttctaacaggaaccattcttttcttcaataggctacttgagacatgaagtattgggtcgtaattgccggtttttaagtggggaagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaacaaccgtgtactgtacatatcttaaattacagaaaagatggaacgtcattttggaattttcttcacatctcaccgatccgaagtgcttcaggaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaaacataaacaagtatgttatggtaatttaattttgatcttttctttgtcagaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35584" stop="32299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35284" g_stop="35009" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34814" g_stop="34759" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="332" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34668" g_stop="34605" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="396" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32905" g_stop="32602" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="701" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="722"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E544526" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35284" e_stop="35009"/>
          <exon e_start="34814" e_stop="34759"/>
          <exon e_start="34668" e_stop="34605"/>
          <exon e_start="32905" e_stop="32602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAGGTTGGTTCTGATCATTGCATAACATTTAGATAAGAATTGTGTCCATGTTATTTAGGCTCAATCTGTTGGTGGCTGCGTGTTTCCTTTCAGAAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAGGTAATACTTTAAACTAATAGGTACATATTTACTAGCATTGTTTTATGGGATAGAGTGTTGGCCAGTCAAGATTGCCCATGTCCAGAAGATGAATGTAGCAGAGATGAGGATGTCCATTTGTATGTGTGGGCATACTAGGAGAAATATGATTAGGAACGAAGTTATACAATGCAAGGTGGGACTGGCCTCTGTGGCGGACAAAATGAGGAAACGAGACTAATATGGTTTGGGAGGTGCACAGATGTGCCAGTTAGGAGGTGTGGAAGGTTGCTTGAGCAGGAGTTAGGAGAGGTAGAGGTATGCCAAAAAAGAACTGGGTGTGTAGAGGGGTGGGGGAGGTGATTAGTAAGACGTGACACATCTTCATCTTACTGGGAACCCTATCGAAGATTAGGTAAAAGGTTAGTAGGTAGCCGAGTCTGGTCGCCCGTTAGGTGGGTGAGGCAACGGGGCTTGCCACATATCCTTTCTACTTATTATTAGTAGTATTTAGTAATCACATAGTTTCTTGTTCTTCTATGTGTTTATATCATCCATTGCTTCATTTTCCTTTGTTTCTTCAAATTTTGTTGTCATTTTTTCTTCGTGCAATCCTTCTATGAATAATCCCTTTTTAAGTCGTGAGTCTATCAAAGACAATCTCTCTACCCTACAAAGGTGCGGTTAAGGTCTGCATACATCTTTATTTCTATTTTGTATAAGAAGAAAACTGCTTGTTATCTAAACTAGTACTAGTAGAGTTAAATAATCTTTGAATAAACAAGCTCTGTTGTCCCAAGAGTAAGTTGGCCAAAGAGCCAAGACAAGCTTATGTTTCATTAGTTGAGATTGTTCCAAGCCAATTGTAGGTTCACTGGTGTCGTAAAGTAGTGGCATCACCGCTGTCTTTGTCAAGATTATGGTGCTCTAATGATTCCCGCCACCTATCGAGGTGATATATAGTCTATTAACAGAGCATATCCACATGTTTTTCTCAATGTAAACAACTTCTTGACAGGTTCTTTTTCGTTAATACCATGTCCAAATAGAATGAATACATATTCTTAGACATGTCTGTTAGTGTTTCCAGTTTTGCAAAATATGGGGTTATGAATTAAAAATTTATTGATTACCTTTGCATACATTATTCTTCAATCAAGATTCGAGATGCGAATTGGTTCACAGGCATCAGGAGTAATGGATGGACTAAGTTTCTTCTTTGCTCTATATTAGGAGATGTAGATCTGAGATTAGTTCAATGTCTTCTTGAATAACCAAGCTCGAAAAAATTTGAGTTTTTGTCCATAGATTACTACCTAGCCATGATGTTCAAAGAACTTGGCGGAAAAATAGAAGTAGGAAGTGAAACCAGTTGTTATTTGCTTTGTTTAGGTAGTAAATCGAGTAGACGTTTATGTTGGACTCTGTCTCGATCCCAATCCACTTCTCAATATTGGATTTGAGACAGGTCTGAATGAAGCGGCATGAACAATGAGGATTCACATAGTCGACCCCAACTAACTTGCAATCGAGGCCTAGTCGTCCTATTGTTCTTAGAGCTCAGTGACAACTGACAAAGTCACATTAGACACTTTCTGCATAGTTTGTTATTTTTCTGTTACAACACAACTTAGGCTACTTCTACCTACTGCTGTCTGTTGAAAAATTTAGTCCTACTTGAGCTTAACCCGTTGTAGTTCTGTCTCGTTTGGCTGCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAG-AAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAG</genome_strand>
        <mrna_strand>CAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG..........................................................................................AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292267" ref_strand="+" ref_description="SGN-E292267 [cLET-1-P24]">
      <seq>gaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgataaaaatgtactcttgttagctcattggtaccagaaaaaataaaaaacattaacaagtatgttatggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="33209" stop="32328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32905" g_stop="32618" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="293" r_length="288" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E292267" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32905" e_stop="32618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</genome_strand>
        <mrna_strand>GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGATAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAATAAAAAACATTAACAAGTATGTTATGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373146" ref_strand="+" ref_description="SGN-E373146 [TUS-32-C17]">
      <seq>gaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaacataaacaagtatgttatggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="33209" stop="32328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32905" g_stop="32618" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="293" r_length="288" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E373146" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32905" e_stop="32618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</genome_strand>
        <mrna_strand>GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373145" ref_strand="+" ref_description="SGN-E373145 [TUS-32-C17](-)">
      <seq>ggaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttttgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaacataaacaagtatgttaggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="33211" stop="32328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32619" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E373145" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTT</genome_strand>
        <mrna_strand>GGAAAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTTTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTA-GGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240151" ref_strand="+" ref_description="SGN-E240151 [cLED-25-A9]">
      <seq>aagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaacaaccgtgtactgtacatatcttaaattacagaaaagatggaacgtcattttggaattttcttcacatctcaccgatccgaagtgcttcaggaaaggtcgcgtattttgttggcattcagatagaagatactaccgaggctcgggagaaacaaggactgaatccggaaatgaggcatcgcagtgttgtagctgctgtaaaggtggctgtgagagggtggtcaatgggtgcaagtacctcctagttcatgaagaaatttgtgttttgctttttttggttctgataaacaaactggactctgctgaaaaaaatgtactcttgttagctcattggtaccagaaaaaaaaaaaaacataaacaagtttgttatggtaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35337" stop="32324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35037" g_stop="35009" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34814" g_stop="34759" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="85" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34668" g_stop="34605" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="149" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32905" g_stop="32624" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="431" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E240151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35037" e_stop="35009"/>
          <exon e_start="34814" e_stop="34759"/>
          <exon e_start="34668" e_stop="34605"/>
          <exon e_start="32905" e_stop="32624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAGGTTGGTTCTGATCATTGCATAACATTTAGATAAGAATTGTGTCCATGTTATTTAGGCTCAATCTGTTGGTGGCTGCGTGTTTCCTTTCAGAAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAGGTAATACTTTAAACTAATAGGTACATATTTACTAGCATTGTTTTATGGGATAGAGTGTTGGCCAGTCAAGATTGCCCATGTCCAGAAGATGAATGTAGCAGAGATGAGGATGTCCATTTGTATGTGTGGGCATACTAGGAGAAATATGATTAGGAACGAAGTTATACAATGCAAGGTGGGACTGGCCTCTGTGGCGGACAAAATGAGGAAACGAGACTAATATGGTTTGGGAGGTGCACAGATGTGCCAGTTAGGAGGTGTGGAAGGTTGCTTGAGCAGGAGTTAGGAGAGGTAGAGGTATGCCAAAAAAGAACTGGGTGTGTAGAGGGGTGGGGGAGGTGATTAGTAAGACGTGACACATCTTCATCTTACTGGGAACCCTATCGAAGATTAGGTAAAAGGTTAGTAGGTAGCCGAGTCTGGTCGCCCGTTAGGTGGGTGAGGCAACGGGGCTTGCCACATATCCTTTCTACTTATTATTAGTAGTATTTAGTAATCACATAGTTTCTTGTTCTTCTATGTGTTTATATCATCCATTGCTTCATTTTCCTTTGTTTCTTCAAATTTTGTTGTCATTTTTTCTTCGTGCAATCCTTCTATGAATAATCCCTTTTTAAGTCGTGAGTCTATCAAAGACAATCTCTCTACCCTACAAAGGTGCGGTTAAGGTCTGCATACATCTTTATTTCTATTTTGTATAAGAAGAAAACTGCTTGTTATCTAAACTAGTACTAGTAGAGTTAAATAATCTTTGAATAAACAAGCTCTGTTGTCCCAAGAGTAAGTTGGCCAAAGAGCCAAGACAAGCTTATGTTTCATTAGTTGAGATTGTTCCAAGCCAATTGTAGGTTCACTGGTGTCGTAAAGTAGTGGCATCACCGCTGTCTTTGTCAAGATTATGGTGCTCTAATGATTCCCGCCACCTATCGAGGTGATATATAGTCTATTAACAGAGCATATCCACATGTTTTTCTCAATGTAAACAACTTCTTGACAGGTTCTTTTTCGTTAATACCATGTCCAAATAGAATGAATACATATTCTTAGACATGTCTGTTAGTGTTTCCAGTTTTGCAAAATATGGGGTTATGAATTAAAAATTTATTGATTACCTTTGCATACATTATTCTTCAATCAAGATTCGAGATGCGAATTGGTTCACAGGCATCAGGAGTAATGGATGGACTAAGTTTCTTCTTTGCTCTATATTAGGAGATGTAGATCTGAGATTAGTTCAATGTCTTCTTGAATAACCAAGCTCGAAAAAATTTGAGTTTTTGTCCATAGATTACTACCTAGCCATGATGTTCAAAGAACTTGGCGGAAAAATAGAAGTAGGAAGTGAAACCAGTTGTTATTTGCTTTGTTTAGGTAGTAAATCGAGTAGACGTTTATGTTGGACTCTGTCTCGATCCCAATCCACTTCTCAATATTGGATTTGAGACAGGTCTGAATGAAGCGGCATGAACAATGAGGATTCACATAGTCGACCCCAACTAACTTGCAATCGAGGCCTAGTCGTCCTATTGTTCTTAGAGCTCAGTGACAACTGACAAAGTCACATTAGACACTTTCTGCATAGTTTGTTATTTTTCTGTTACAACACAACTTAGGCTACTTCTACCTACTGCTGTCTGTTGAAAAATTTAGTCCTACTTGAGCTTAACCCGTTGTAGTTCTGTCTCGTTTGGCTGCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTA</genome_strand>
        <mrna_strand>AAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG..........................................................................................AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTTTGTTATGGTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302108" ref_strand="+" ref_description="SGN-E302108 [cLEW-19-G12]">
      <seq>gggagaaatggaggagtatgttatgatggaggtaattgcagggggtatgtctataagtgttgtaggagggaggtttgctcgaattcgatgatggaaatggacagagcgttatcggttgattcagtttcggggttggaccatacagaagtagatgttgaaggaccttgtgaagcaagtgatcaagagaagacaaaagccagtgttgctgtcaacaacataatgtccgtgttggcaaactacagtgagttgaatggcagactggtcattgacaggagatgctgtcaatcgggaacgagtctgctcagtgcatccttaaatatatcttttggtagaataaaacaaagctttgtattaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggctacttgagacatgaagtattgggtcgtaattgccggtttttaagtggggaagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaacaaccgtgtactgtacatatcttaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36750" stop="34461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36450" g_stop="36306" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35613" g_stop="35406" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="353" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35301" g_stop="35237" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="418" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148">
            <donor d_prob="0.295" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35088" g_stop="35009" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="498" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34814" g_stop="34761" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="552" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E302108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36450" e_stop="36306"/>
          <exon e_start="35613" e_stop="35406"/>
          <exon e_start="35301" e_stop="35237"/>
          <exon e_start="35088" e_stop="35009"/>
          <exon e_start="34814" e_stop="34761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAGGTATGTGTTTATTCTTTATGCTTCTTCAAAGTTATCTCAATTTGTGGTTGTTTATACTGGTGGACTAATTGTTTCATTTTCATCGTCAATATGCTCATTAAGATGTTTGGTATATCGTCTCTGTCTCTGTTAGAACATGATTTTGAAATTTGTTGCACTAACCTCTAATCATTTGAGTATTGTATCTTCAGCTTATGGTCCTAAATTCTTTTTAATGGCTGCCTTTGCTCCTTGGAGCAACGGTAAAGTTGTCTGTATGTGATCCATAGCTCACAAGTTTGAGCTGTGGAAGCAACCACTAATGCTTGAATTAGTTTAAGCTGTCTACATCACACGTCTTGGGTTGCTGCACTTCCCAGGACCCAACACGGGGCTGCCCTTTTCCTTTTTTTTTTCTTAAGCTTAAATTCACGTTTTGAGTCATTTCCGTCAGTTGGTTGAGTTAGGACTTGGTTATGTTTTGGGGTGCATACACCTTTCCCATCACTTTGTGCTGGAGTTTCAATGTGCAGATTAGCAGTCCTAGTCAGTATGTATAAAGCATAAAAGTTCGTCCTGCTACCTTGTACTGCAGGACTTTGTTTCCCATTTTTGTACATTTGTATTATCTATGCTTCTTTTTCATTCTTAAATCCTAGTCTAGAGTTCCGTTAGTTTTGTTACTTTAGTTTCATGTAGCTTATATATCGCAGAAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTAC</genome_strand>
        <mrna_strand>GGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT........................................................................................................AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG....................................................................................................................................................GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277408" ref_strand="+" ref_description="SGN-E277408 [cLER-3-B5]">
      <seq>aagtgttgtatagagggaggtttgctcgaattcgatgatggaaatggacagagcgttatcggttgattcagtttcggggttggaccatacagaagtagatgttgaaggaccttgtgaagcaagtgatcaagagaagacaaaagccagtgttgctgtcaacaacataatgtccgtgttggcaaactacagtgagttgaatggcagactggtcattgacaggagatgctgtcaatcgggaacgagtctgctcagtgcatccttaaatatatcttttggtagaataaaacaaagctttgtattaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggctacttgagacatgaagtattgggtcgtaattgccggtttttaagtggggaagatacagagagaggcacacaatttcagataaaacaatgcatccaaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36696" stop="34490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36396" g_stop="36306" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35613" g_stop="35406" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="300" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35301" g_stop="35237" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="365" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148">
            <donor d_prob="0.295" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35088" g_stop="35009" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="445" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34814" g_stop="34790" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="470" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E277408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36396" e_stop="36306"/>
          <exon e_start="35613" e_stop="35406"/>
          <exon e_start="35301" e_stop="35237"/>
          <exon e_start="35088" e_stop="35009"/>
          <exon e_start="34814" e_stop="34790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTTGTA-GGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAGGTATGTGTTTATTCTTTATGCTTCTTCAAAGTTATCTCAATTTGTGGTTGTTTATACTGGTGGACTAATTGTTTCATTTTCATCGTCAATATGCTCATTAAGATGTTTGGTATATCGTCTCTGTCTCTGTTAGAACATGATTTTGAAATTTGTTGCACTAACCTCTAATCATTTGAGTATTGTATCTTCAGCTTATGGTCCTAAATTCTTTTTAATGGCTGCCTTTGCTCCTTGGAGCAACGGTAAAGTTGTCTGTATGTGATCCATAGCTCACAAGTTTGAGCTGTGGAAGCAACCACTAATGCTTGAATTAGTTTAAGCTGTCTACATCACACGTCTTGGGTTGCTGCACTTCCCAGGACCCAACACGGGGCTGCCCTTTTCCTTTTTTTTTTCTTAAGCTTAAATTCACGTTTTGAGTCATTTCCGTCAGTTGGTTGAGTTAGGACTTGGTTATGTTTTGGGGTGCATACACCTTTCCCATCACTTTGTGCTGGAGTTTCAATGTGCAGATTAGCAGTCCTAGTCAGTATGTATAAAGCATAAAAGTTCGTCCTGCTACCTTGTACTGCAGGACTTTGTTTCCCATTTTTGTACATTTGTATTATCTATGCTTCTTTTTCATTCTTAAATCCTAGTCTAGAGTTCCGTTAGTTTTGTTACTTTAGTTTCATGTAGCTTATATATCGCAGAAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAGGTAATTTTTTCTTTTCAGATCTGCTATCATTTGCTTAATTTCGTTAGTTGCATTGCTAACTGCTACATCTTGGGGTAAGAGATGTGGTGCCCTTTGTAAGATTAAGATTTTCTCAAGTGGGGGAAGTGCTAAGGGAAGGTAAGCGGTTGAGCAGCTGATCATAATCCTTATTTACTTTTTTTCTCACTTTGCAGATAAAACAATGCATCCAAAATGAAC</genome_strand>
        <mrna_strand>AAGTGTTGTATAGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT........................................................................................................AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG....................................................................................................................................................GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG..................................................................................................................................................................................................ATAAAACAATGCATCCAAAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549057" ref_strand="+" ref_description="SGN-E549057 [TUS-66-O12]">
      <seq>gaagaaatggaggagtatgttatgatggaggtaattgcagggggtatgtctataagtgttgtaggagggaggtttgctcgaattcgatgatggaaatggacagagcgttatcggttgattcagtttcggggttggaccatacagaagtagatgttgaaggaccttgtgaagcaagtgatcaagagaagacaaaagccagtgttgctgtcaacaacataatgtccgtgttggcaaactacagtgagttgaatggcagactggtcattgacaggagatgctgtcaatcgggaacgagtctgctcagtgcatccttaaatatatcttttggtagaataaaacaaagctttgtattgtgagttttttttaattcctaattttcttgttttgatgaccaatatgatctgttattggatggacttaccactttctcttggaatatctttctgtaacgtgcagaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgccttcctaaaattaataggtgctaaagctgtagctaatttacactagacattccatgggatgttctcattgtttatgggtttgggtctatttcttgtgttcataaaagagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36749" stop="34841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36449" g_stop="36306" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35613" g_stop="35141" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="617" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E549057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36449" e_stop="36306"/>
          <exon e_start="35613" e_stop="35141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAGGTATGTGTTTATTCTTTATGCTTCTTCAAAGTTATCTCAATTTGTGGTTGTTTATACTGGTGGACTAATTGTTTCATTTTCATCGTCAATATGCTCATTAAGATGTTTGGTATATCGTCTCTGTCTCTGTTAGAACATGATTTTGAAATTTGTTGCACTAACCTCTAATCATTTGAGTATTGTATCTTCAGCTTATGGTCCTAAATTCTTTTTAATGGCTGCCTTTGCTCCTTGGAGCAACGGTAAAGTTGTCTGTATGTGATCCATAGCTCACAAGTTTGAGCTGTGGAAGCAACCACTAATGCTTGAATTAGTTTAAGCTGTCTACATCACACGTCTTGGGTTGCTGCACTTCCCAGGACCCAACACGGGGCTGCCCTTTTCCTTTTTTTTTTCTTAAGCTTAAATTCACGTTTTGAGTCATTTCCGTCAGTTGGTTGAGTTAGGACTTGGTTATGTTTTGGGGTGCATACACCTTTCCCATCACTTTGTGCTGGAGTTTCAATGTGCAGATTAGCAGTCCTAGTCAGTATGTATAAAGCATAAAAGTTCGTCCTGCTACCTTGTACTGCAGGACTTTGTTTCCCATTTTTGTACATTTGTATTATCTATGCTTCTTTTTCATTCTTAAATCCTAGTCTAGAGTTCCGTTAGTTTTGTTACTTTAGTTTCATGTAGCTTATATATCGCAGAAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATG</genome_strand>
        <mrna_strand>GAAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276018" ref_strand="+" ref_description="SGN-E276018 [cLEN-12-G15]">
      <seq>cgattcgtgaggagaggggtatacagattagtttgttgaattataggaaggatgggacacccttttggatgttgtttaatatgtgtcctgtttatagtgagaaggatgggagggtggttcattttttgggaattcaagtgcctattttgaggaggagaaattcactaggtggtggaattgggagaaatggaggagtatgttatgatggaggtaattgcagggggtatgtctataagtgttaggagggaggtttgctcgaattcgatgatggaaatggacagagcgttatcggttgattcagtttcggggttggaccatacagaagtagatgttgaaggaccttgtgaagcaagtgatcaagagaagacaaaagccagtgttgctgtcaacaacataatgtccgtgttggcaaactacagtgagttgaatggcagactggtcattgacaggagatgctgtcaatcgggaacgagtctgctcagtgcatccttaaatatatcttttggtagaataaaacaaagctttgtattaactgacgcacacttaccagacatgccaattgtctatgcaagtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36929" stop="34954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36629" g_stop="36306" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35613" g_stop="35406" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="530" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35301" g_stop="35254" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="578" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E276018" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36629" e_stop="36306"/>
          <exon e_start="35613" e_stop="35406"/>
          <exon e_start="35301" e_stop="35254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAGGTATGTGTTTATTCTTTATGCTTCTTCAAAGTTATCTCAATTTGTGGTTGTTTATACTGGTGGACTAATTGTTTCATTTTCATCGTCAATATGCTCATTAAGATGTTTGGTATATCGTCTCTGTCTCTGTTAGAACATGATTTTGAAATTTGTTGCACTAACCTCTAATCATTTGAGTATTGTATCTTCAGCTTATGGTCCTAAATTCTTTTTAATGGCTGCCTTTGCTCCTTGGAGCAACGGTAAAGTTGTCTGTATGTGATCCATAGCTCACAAGTTTGAGCTGTGGAAGCAACCACTAATGCTTGAATTAGTTTAAGCTGTCTACATCACACGTCTTGGGTTGCTGCACTTCCCAGGACCCAACACGGGGCTGCCCTTTTCCTTTTTTTTTTCTTAAGCTTAAATTCACGTTTTGAGTCATTTCCGTCAGTTGGTTGAGTTAGGACTTGGTTATGTTTTGGGGTGCATACACCTTTCCCATCACTTTGTGCTGGAGTTTCAATGTGCAGATTAGCAGTCCTAGTCAGTATGTATAAAGCATAAAAGTTCGTCCTGCTACCTTGTACTGCAGGACTTTGTTTCCCATTTTTGTACATTTGTATTATCTATGCTTCTTTTTCATTCTTAAATCCTAGTCTAGAGTTCCGTTAGTTTTGTTACTTTAGTTTCATGTAGCTTATATATCGCAGAAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGC</genome_strand>
        <mrna_strand>CGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTG-T-TAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT........................................................................................................AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273763" ref_strand="+" ref_description="SGN-E273763 [cLEN-7-O16]">
      <seq>cgattcgtgaggagaggggtatacagattagtttgttgaattataggaaggatgggacacccttttggatgttgtttaatatgtgttctgtttatagtgagaaggatgggagggtggttcattttttgggaattcaagtgcctattttgaggaggagaaattcactatgtggtggaattgggagaaatggaggagtatgttatgatggaggtaattgcagggggtatgtctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36929" stop="36095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36629" g_stop="36395" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E273763" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36629" e_stop="36395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAA</genome_strand>
        <mrna_strand>CGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTTCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTATGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349002" ref_strand="+" ref_description="SGN-E349002 [cTOF-29-L7]">
      <seq>ttttgtgtatggtttgaagctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagatcagttatggcgattcgagaggcgattcgtgaggagaggggtatacagattagtttgttgaattataggaaggatgggacacccttttggatgttgtttaatatgtgtcctgtttatagtgagaaggatgggagggtggttcattttttgggaattcaagtgccctttttgaggaggagaaattcactaggtggtggaattgggagaaatggangagtatgttatgatggaggtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37301" stop="36114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37001" g_stop="36414" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E349002" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37001" e_stop="36414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATT</genome_strand>
        <mrna_strand>TTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCCTTTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGANGAGTATGTTATGATGGAGGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330290" ref_strand="+" ref_description="SGN-E330290 [cTOD-4-J9]">
      <seq>gatttagagttttagtatatggggttgtcttttcttatgtgtgctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagatcagttatggcgattcgagaggcgattcgtgaggagaggggtatacagattagtttgttgaattataggaaggatgggacacccttttggatgttgtttaatatgtgtcctgtttatagtgagaaggatgggagggtggttcattttttgggaattcaagtgcctattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37411" stop="36180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37111" g_stop="37069" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37068" i_stop="36983" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36480" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="546" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E330290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37111" e_stop="37069"/>
          <exon e_start="36982" e_stop="36480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGA</genome_strand>
        <mrna_strand>GATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTG......................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211497" ref_strand="+" ref_description="SGN-E211497 [cLEC-67-P5]">
      <seq>tcattcaataccttacaacttagatatttttctccatctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagatcagttatggcgattcgagaggcgattcgtgaggagaggggtatacagattagtttgttgaattataggaaggatgggacacccttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37600" stop="36262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37300" g_stop="37264" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36562" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="458" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E211497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37300" e_stop="37264"/>
          <exon e_start="36982" e_stop="36562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGG</genome_strand>
        <mrna_strand>TCATTCAATACCTTACAACTTAGATATTTTTCTCCAT.........................................................................................................................................................................................................................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252471" ref_strand="+" ref_description="SGN-E252471 [cLEG-20-E7]">
      <seq>ccgggctgcaggcccaattcttattgttcattcaataccttacaacttagatatttttctccatctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagatcagttatggcgattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37615" stop="36335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37316" g_stop="37264" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="64" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36635" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="412" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E252471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37316" e_stop="37264"/>
          <exon e_start="36982" e_stop="36635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATTCTTATTGTTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCG</genome_strand>
        <mrna_strand>GCCCAATTCTTATTGTTCATTCAATACCTTACAACTTAGATATTTTTCTCCAT.........................................................................................................................................................................................................................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301379" ref_strand="+" ref_description="SGN-E301379 [cLEW-24-B16]">
      <seq>ttcattgggtaccttacaactgagatatttttctccatctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37592" stop="36350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37301" g_stop="37264" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36650" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="371" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E301379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37301" e_stop="37264"/>
          <exon e_start="36982" e_stop="36650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATC</genome_strand>
        <mrna_strand>TTCATTGGGTACCTTACAACTGAGATATTTTTCTCCAT.........................................................................................................................................................................................................................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285681" ref_strand="+" ref_description="SGN-E285681 [cLES-5-P3]">
      <seq>ttattgatgatttgtttgctcttgttttgtgtatggtttgaagctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaagggcctaagactaatagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37325" stop="36351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37025" g_stop="36651" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E285681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37025" e_stop="36651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGAT</genome_strand>
        <mrna_strand>TTATTGATGATTTGTTTGCTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329333" ref_strand="+" ref_description="SGN-E329333 [cTOD-2-N23]">
      <seq>aacttagatatttttctccatctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttattcaaagaatgaggttttagggaagaatggaagggtatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37584" stop="36373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37284" g_stop="37264" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36673" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="331" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E329333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37284" e_stop="37264"/>
          <exon e_start="36982" e_stop="36673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAA</genome_strand>
        <mrna_strand>AACTTAGATATTTTTCTCCAT.........................................................................................................................................................................................................................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394515" ref_strand="+" ref_description="SGN-E394515 [TUS-41-D24]">
      <seq>caacttagatatttttctccatctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtatcaaggggtttcttgaaagtatttggttatacattttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37585" stop="36412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37285" g_stop="37264" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36982" g_stop="36717" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="288" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E394515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37285" e_stop="37264"/>
          <exon e_start="36982" e_stop="36717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTT</genome_strand>
        <mrna_strand>CAACTTAGATATTTTTCTCCAT.........................................................................................................................................................................................................................................................................................CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325142" ref_strand="+" ref_description="SGN-E325142 [cTOC-13-H21]">
      <seq>cgtgaaatgaattaatgagtttcgtaaaaatgcaggcaagactgtgttagatttagagttttagtatatggggttgtcttttcttatgtgtggtatgttaaattctatgtgctatttctatggttatttttttgtttattgatgatttgtttgttcttgttttgtgtatggtttgaagctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactcagatggggttagagaagctcttgatgaattgcctgatagttttacaattactgatccctctatttctggtcaccctattgtttatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37460" stop="36444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37160" g_stop="36744" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E325142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37160" e_stop="36744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTAT</genome_strand>
        <mrna_strand>CGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330993" ref_strand="+" ref_description="SGN-E330993 [cTOD-10-L12]">
      <seq>ttcattcaataccttacaacttagatatttttctccatgtaagctcttcaatattgtttttatcgtaactgataaaattattgttatatatgagtcttttttagaaatataaaataagattgtgttagatttgttatatagcgtgaaatgaattaatgagtttcgtaaaaatgcaggcaagactgtgttagatttagagttttagtatatggggttgtcttttcttatgtgtggtatgttaaattctatgtgctatttctatggttatttttttgtttattgatgatttgtttgttcttgttttgtgtatggtttgaagctgaagttcccaattatactagttgacacatgggattgagattggggttaatctttgttgataaagttagagtctttaagccaaaacaagttgaatcagtatggaatcacaactgggtttaattgaaaaatcatttaatgttaaatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37601" stop="36533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37301" g_stop="36833" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E330993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37301" e_stop="36833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTC</genome_strand>
        <mrna_strand>TTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336291" ref_strand="+" ref_description="SGN-E336291 [cTOE-10-G9]">
      <seq>tttcatgttatttaacattatgatataataaaatttaaataataattaaagctaaaaccataaacacacttgttagttgtgaataaatctaacattttaatgaaaaattgaacttttcgttataaaaaaaacgaagctttgacacagatccaaagcctatcacacacagcaccgatttattccggtccgactcaccaccggttcaccgccgtgttcccgatcggcaacctccctgactctcttctccggtaacatctccgatcagggagttacaggggaaatcatgaacttcctgatgctgaggtctaatcagactgcagcttctgagcattcacctgctcgtggagtgcaatcggtgccaactcatgcttccaaaccaagtactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="41641" stop="43020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41941" g_stop="42205" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42206" i_stop="42595" i_length="390">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42596" g_stop="42720" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="390" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E336291" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41941" e_stop="42205"/>
          <exon e_start="42596" e_stop="42720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATGTTATTTAACATTATGATATAATAAAATTTAAATAATAATTAAAGCTAAAACCATAAACACACTTGTAAGTTGTGAATAAATCTAACATTTTAATGAAAAATTGAACTTTTCGTTATAAAAAAAACGAAGCTTTGACACAGATCCAAAGCCTATCACACACAGCACCGATTTATTCCGGTCCGACTCACCACCGGTTCACCGCCGTGTTCCCGATCGGCAACCTCCCTGACTCTCTTCTCCGGTAACATCTCCGATCAGGTATTTTCCGATTTCATTTCCTCTTTCTCTTTGTCCATTACTGATCCTATACCTCAAAAAACACGTACTCTTCATCTGGTAGACTCCTATCGCTTTACAATTCTCATTCTATAGTTTTATCTGTCTTCAAATTTTATCTGTTTTAGTATTTGCCAATGATTGTCGTGTTTATTAGTTGAATGTTTTTGATGAGTTTGGTTGCTAGCAAATGGTCATAATTGAGTAGAAAATGTAATGCTTTGAGCAGAGGTAGATCCAGCATTTGTGCATCCAATGCCTCACTAGAACACTATTTTGTGTGGATAGAAAATTAACATACACACGTATATTTAGGTTTTTGTTGTCAGTTTCGAGGATTTGGATAGTGAAGTTAAGATTTTATTGTTGTAGGGAGTTACAGGGGAAATCATGAACTTCCTGATGCTGAGGTCTAATCAGACTGCAGCTTCTGAGCATTCACCTGCTCGTGGAGTGCAATCGGTGCCAACTCATGCTTCCAAACCAAGTACTACTTT</genome_strand>
        <mrna_strand>TTTCATGTTATTTAACATTATGATATAATAAAATTTAAATAATAATTAAAGCTAAAACCATAAACACACTTGTTAGTTGTGAATAAATCTAACATTTTAATGAAAAATTGAACTTTTCGTTATAAAAAAAACGAAGCTTTGACACAGATCCAAAGCCTATCACACACAGCACCGATTTATTCCGGTCCGACTCACCACCGGTTCACCGCCGTGTTCCCGATCGGCAACCTCCCTGACTCTCTTCTCCGGTAACATCTCCGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTACAGGGGAAATCATGAACTTCCTGATGCTGAGGTCTAATCAGACTGCAGCTTCTGAGCATTCACCTGCTCGTGGAGTGCAATCGGTGCCAACTCATGCTTCCAAACCAAGTACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338809" ref_strand="+" ref_description="SGN-E338809 [cTOE-21-P23]">
      <seq>acagtgaagacacttaaaaagaagctgtctctgagtgcttccactgataagggaaactttgatgctagaacctctggtggagtggcaagaaatgctgtcaagtgttgtgccctttcaaatggagatatagtggtacttttacaagtaaatgtcggtattgagtttgtgagagatcccgtgcttgaaattcttcaatttgagaagtattacgagagaagtttgtcgtctttgaatgaggataatttgacttatgcaaatcaggatccctgtggtgaactgctgaaatggctacttcctatagataattctattcctccttccgcacgacctttatccccgcctcaattaagttccagtgcgagcattcgtagcacatccacgaagcccgtcgtatctggatcttctggatcacaactcttttctttcggtaactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44509" stop="46513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44809" g_stop="44940" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44941" i_stop="45908" i_length="968">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45909" g_stop="46213" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="437" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E338809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44809" e_stop="44940"/>
          <exon e_start="45909" e_stop="46213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGAAGACACTTAAAAAGAAGCTGTCTCTGAGTGCTTCCACTGATAAGGGAAACTTTGATGCTAGAACCTCTGGTGGAGTGGCAAGAAATGCTGTCAAGTGTTGTGCCCTTTCAAATGGAGATATAGTGGTATGTTCCGCAAAAATTGTAGTGTCAGCAGTTACACCCAATCTCTTGTGAAATATATACAGACCAATGTACATGCCATCACCTTTTCCTTAAATTGTACAAAGACATTCCATTTCTTTCATAGTGTTGACGTTGGTATCTGCTGTCGTGTTTCTGTTTTTTTAGTTAAACTTATGCCTGCATGAACCTATTTCCCCTTACTTTAGCATGTAGTTAGCAGATCCAAAAGAAACATAGTTTCTTTATTGTGCGAAATGTCCACTGTGCTAGGATTGATGCAATTGAAAGAAACCACATTGAGCTCGGGTTTTCAAATGTGGCAAAAAAATTTTGTTGTCCTGTCAAAACAGTAGTTTAGATGTGGAGATGGTGGTCAGATGTCATACATAAGCTTCTCCGGAAGGAAGGGGGTTATTTGGAAAGGGATTCTTGGAGGAGTAACCTGATTTAGAGTGTTTTTCTTGAGAAATTTGTATCAGGGTCCAGGAGAAGGTTGTTGTAGTGCTGAATGGTATGGCTAGAAAAATTCGGGTTTCTCTCCAGGTTATAATGGGTTCCTTAGTGTTATTTCTAGAAGTATGATCTCACTGTTTGATGTAGTGCAGGGTGACTAGTGGATTCTACAGATGTCTTCCCGTTTTATTTTCTCCTTATTCGATCTCTATAATTTCTTTTGAAGGCAATCATAAACACGGATGTTAGACAAGAATTGTTTTAGTGGTTGGAACATTTAAATCAGAGTAAGGTAGGGGTAAGGCTGCATACACTACCTTCCACAGAATTCACTTGTGGGACTACATTGGGTATGATGTTGTTGAACATTTAAATTAGAGATGAAAAATAGTACCTCTTTTGCTGCCCTTTCTGATGCTTATAGACTTTTAATTGTACTACTTATTAGTTGTCTTTTTAGATTTTCCTGGAGAACAACTGATGTAGATACAATTTTCTTGTTTGGAAGGATGCAGGTACTTTTACAAGTAAATGTCGGTATTGAGTTTGTGAGAGATCCCGTGCTTGAAATTCTTCAATTTGAGAAGTATTACGAGAGAAGTTTGTCGTCTTTGAATGAGGATAATTTGACTTATGCAAATCAGGATCCCTGTGGTGAACTGCTGAAATGGCTACTTCCTATAGATAATTCTATTCCTCCTTCCGCACGACCTTTATCCCCGCCTCAATTAAGTTCCAGTGCGAGCATTCGTAGCACATCCACGAAGCCCGTCGTATCTGGATCTTCTGGATCACAACTCTTTTCTTTCGGTAACTTTAG</genome_strand>
        <mrna_strand>ACAGTGAAGACACTTAAAAAGAAGCTGTCTCTGAGTGCTTCCACTGATAAGGGAAACTTTGATGCTAGAACCTCTGGTGGAGTGGCAAGAAATGCTGTCAAGTGTTGTGCCCTTTCAAATGGAGATATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTTACAAGTAAATGTCGGTATTGAGTTTGTGAGAGATCCCGTGCTTGAAATTCTTCAATTTGAGAAGTATTACGAGAGAAGTTTGTCGTCTTTGAATGAGGATAATTTGACTTATGCAAATCAGGATCCCTGTGGTGAACTGCTGAAATGGCTACTTCCTATAGATAATTCTATTCCTCCTTCCGCACGACCTTTATCCCCGCCTCAATTAAGTTCCAGTGCGAGCATTCGTAGCACATCCACGAAGCCCGTCGTATCTGGATCTTCTGGATCACAACTCTTTTCTTTCGGTAACTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200045" ref_strand="+" ref_description="SGN-E200045 [cLEC-8-E18]">
      <seq>aatgtcggtattgagtttgtgagagatcccgtgcttgaaattcttcaatttgagaagtattacgagagaagtttgtcgtctttgaatgaggataatttgacttatgcaaatcaggatccctgtggtgaactgctgaaatggctacttcctatagataattctattcctccttccgcacgacctttatccccgcctcaattaagttccagtgcgagcattcgtagcacatccacgaagcccgtcgtatctggatcttctggatcacaactcttttctttcggtaactttagaagttactccatgtcttcacttccaccaaatagtgcgccacctccatctgttacaacctccaccactggaccaagttttaatccagaagattgggaacgcttttcatttcaaaggtcagtgaagagtgaaaagatcgggagtgaaggacttttatcttttagaggtgtatctcttgagccagaaagattctcggttcgttgtggtttagaaggtattttcatccctggaagaagatggaggaggaaaattgaaataattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="45624" stop="46773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45924" g_stop="46473" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E200045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45924" e_stop="46473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCGGTATTGAGTTTGTGAGAGATCCCGTGCTTGAAATTCTTCAATTTGAGAAGTATTACGAGAGAAGTTTGTCGTCTTTGAATGAGGATAATTTGACTTATGCAAATCAGGATCCCTGTGGTGAACTGCTGAAATGGCTACTTCCTATAGATAATTCTATTCCTCCTTCCGCACGACCTTTATCCCCGCCTCAATTAAGTTCCAGTGCGAGCATTCGTAGCACATCCACGAAGCCCGTCGTATCTGGATCTTCTGGATCACAACTCTTTTCTTTCGGTAACTTTAGAAGTTACTCCATGTCTTCACTTCCACCAAATAGTGCGCCACCTCCATCTGTTACAACCTCCACCACTGGACCAAGTTTTAATCCAGAAGATTGGGAACGCTTTTCATTTCAAAGGTCAGTGAAGAGTGAAAAGATCGGGAGTGAAGGACTTTTATCTTTTAGAGGTGTATCTCTTGAGCCAGAAAGATTCTCGGTTCGTTGTGGTTTAGAAGGTATTTTCATCCCTGGAAGAAGATGGAGGAGGAAAATTGAAATAATTC</genome_strand>
        <mrna_strand>AATGTCGGTATTGAGTTTGTGAGAGATCCCGTGCTTGAAATTCTTCAATTTGAGAAGTATTACGAGAGAAGTTTGTCGTCTTTGAATGAGGATAATTTGACTTATGCAAATCAGGATCCCTGTGGTGAACTGCTGAAATGGCTACTTCCTATAGATAATTCTATTCCTCCTTCCGCACGACCTTTATCCCCGCCTCAATTAAGTTCCAGTGCGAGCATTCGTAGCACATCCACGAAGCCCGTCGTATCTGGATCTTCTGGATCACAACTCTTTTCTTTCGGTAACTTTAGAAGTTACTCCATGTCTTCACTTCCACCAAATAGTGCGCCACCTCCATCTGTTACAACCTCCACCACTGGACCAAGTTTTAATCCAGAAGATTGGGAACGCTTTTCATTTCAAAGGTCAGTGAAGAGTGAAAAGATCGGGAGTGAAGGACTTTTATCTTTTAGAGGTGTATCTCTTGAGCCAGAAAGATTCTCGGTTCGTTGTGGTTTAGAAGGTATTTTCATCCCTGGAAGAAGATGGAGGAGGAAAATTGAAATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549718" ref_strand="+" ref_description="SGN-E549718 [TUS-6-E20](-)">
      <seq>gacatcaccaatgagtcccttcattggttcttctgatgtagcggagagagtgagtattgataagcaaattagtgctgctccgagcaatagctcggtatcagtaaatcaagtaccggaagggaaaaatctttctcaatcagtttcatttagtgagagagccactcccatacctgatgtgcttccaagtggcgattcaggttgtacacatctatggttgcagagcagagttcccttgggatgtgtgcccgctcaatctacagcaaccatcaaacttgaagtacttcccctgacggatggtataatcacacttgattctttacagattgatgtaaaggagaaaggtgtgacatatgttcctgagcattctctgaagatcaatgcaacttcaagcatttccactgggattatctgaggtgactatttacagttttcagacgtcgtaagtggacagaaagatactcatagtggtagtgtcatacgtagatgatatcgtgagtttgatgtaaatttgaggagtccctttgatgtgtgatgattttgtgtagatttataaaatgccaaaggtgagaatggattatgtgaagggatagtgacggtaccttattgtagatgatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49389" stop="51389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49689" g_stop="49925" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49926" i_stop="49999" i_length="74">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50000" g_stop="50103" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="341" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50104" i_stop="50811" i_length="708">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50812" g_stop="51089" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="619" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E549718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49689" e_stop="49925"/>
          <exon e_start="50000" e_stop="50103"/>
          <exon e_start="50812" e_stop="51089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATCTTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGCCACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTAGTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTTCCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTGACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAAGTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGTTTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATCCATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCTGTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAACTAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAGTTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAATTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTAT</genome_strand>
        <mrna_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATGTAGCGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG..........................................................................ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATAGTGACGGTACCTTATTGTAGATGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244976" ref_strand="-" ref_description="SGN-E244976 [cLEF-2-F11]">
      <seq>ggcgattcaggttgtacacatctatggttgcagagcagagttcccttgggatgtgtgcccgctcaatctacagcaaccatcaaacttgaagtacttcccctgacggatggtataatcacacttgattctttacagattgatgtaaaggagaaaggtgtgacatatgttcctgagcattctctgaagatcaatgcaacttcaagcatttccactgggattatctgaggtgactatttacagttttcagacgtcgtaagtggacagaaagatactcatagtggtagtgtcatacgtagatgatatcgtgagtttgatgtaaatttaaggagtccctttgatgtgtgatgattttgtgtagatttataaaatgccaaaggtgagaatggattatgtgaagggattgtgactgtaccttattgtagatgatgttatgttcaatttgaagtaccaactagggggaaaattgaaaagcaaatgataaggataaaaaaaaaacaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49576" stop="51443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49876" g_stop="49925" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49926" i_stop="49999" i_length="74">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50000" g_stop="50103" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50104" i_stop="50811" i_length="708">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50812" g_stop="51142" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="485" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="502"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E244976" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49876" e_stop="49925"/>
          <exon e_start="50000" e_stop="50103"/>
          <exon e_start="50812" e_stop="51142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATCTTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGCCACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTAGTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTTCCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTGACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAAGTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGTTTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATCCATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCTGTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAACTAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAGTTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAATTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</genome_strand>
        <mrna_strand>GGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG..........................................................................ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTAAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718293" ref_strand="+" ref_description="SGN-E718293 [FC04BA07]">
      <seq>ggccaaatcggccgaattgattcaaacataaaccccagattcaattttttttaaaaaaaaaacatattcctaagggcttattctactactaattattcttcagggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagggagaatatcgtcgacaatgaattcaaaagatgaaaacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcaaaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtaaacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaaaagcctatctggtttaattatatatagttattataaaaattaagaaggttattaatcttgttatttacaattatgttgagtttatatgcatatatatatatatatatatatatatatatatatatatgtgaaaattcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53958" stop="55211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54258" g_stop="54911" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="668" r_length="653" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E718293" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54258" e_stop="54911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</genome_strand>
        <mrna_strand>ATTGATTC-AAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAAGGGCTTATTCTACTACTAATTATTCTTCAGGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGGGAGAATATCGTCGACAATGAATTCAAAAGATGAAAACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAAAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAAACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAAAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATGTGAAAATTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243157" ref_strand="+" ref_description="SGN-E243157 [cLEE-2-O18]">
      <seq>ccagattcaattttttttaaaaacaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaatagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaagagttaattaattgctcaataataaagaataatcatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53978" stop="55076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54278" g_stop="54782" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E243157" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54278" e_stop="54782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGT</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAACAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAATAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAGAGTTAATTAATTGCTCAATAATAAAGAATAATCATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244027" ref_strand="+" ref_description="SGN-E244027 [cLEE-1-K4]">
      <seq>ccagattcaattttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53978" stop="55073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54278" g_stop="54773" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E244027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54278" e_stop="54773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGC</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244193" ref_strand="+" ref_description="SGN-E244193 [cLEE-1-J4]">
      <seq>ccagattcaattttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53978" stop="55071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54278" g_stop="54771" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E244193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54278" e_stop="54771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGA</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725191" ref_strand="+" ref_description="SGN-E725191 [FC26BD12]">
      <seq>attttttttaaaaaaaaaaacatattcctaagggcttattctactactaattattcttcagggaaattcatgtacttaattctcacattatctcttgttctgggctatgcttcttcagggagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggggacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53987" stop="61954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54286" g_stop="54755" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54756" i_stop="56924" i_length="2169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56925" g_stop="56985" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="531" r_length="61" r_score="0.754"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E725191" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54286" e_stop="54755"/>
          <exon e_start="56925" e_stop="56985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATTAATATGAAAGAACTATGACAGTACGTATACTTTGTCGTATAGTGCCATCCTCCCCGCTAGCTTTATGGGCGGAATATTGTCCCTCGAATTATTGCATGTGTTCTTTTGAGCTATGAATTAAAGGAATAAATGTAGTTAAAATTTTTCGCATGAAAACACTAATATATTTTTTTTCTTTTGTCACTAATTCAATCAAAATATTTGTGCCTAAACATTTTTCGATGAAAAATTTCAATGGGAAAAATAATGATCTTGTAGTAATGAACTAATGGCTCATCTAGTTAGTTAGCACCAGAGTGGAGCTAGCTAGCCAGATAGGACTAAGGGGGGTTCAACGATAAAAAATTTACATGATATATGATTAATTTTTTTTAATATATGTATATAGAGTAAATGTTGTGTACTAGTCTCTGTATTTCTTTGTTTTCATCTTTTACGTAGCTACAACATTTTGATATTTCGCGAAGGATCAATTACTAAGTTTACCCTAAGTCGAGAAATTATCCTCTGGTCGATATCTTAATATATTTTATTTATTTATTGCTTTGGTTCGGGAGAATTTTATTTACTTAATTAGGAGGTTCATCCAATAAAAAAAAAAGAACAGATCTAAACGATACAGACGATAACTTAATATATTTCCTCTCTAGACGGTAACTTAATATATTTCCTCTCTAGAAACAACATTCAGATAACTCGATAGAATAGTTTTCCATATTTACAATATGTGATACTTGGATAAACTGTATCCTATCAAAGACGATTCTATTCTCGAGACTCAAACCTCTGATTGATGCATTTGAGTTGCTATTCTGACATATTTTCAAGGGTTTTATTTAATTTTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTGACATAGCGTCTATATATAGTGCTAAGCTACGCCCTAAAAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCTAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGAGCAGCGAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAAATTTGTTTGTGGATTTGTTACAAATGTTTGTTACTTAATCCTTCCAATTTGATTTATCTGGGGTGACTAGATCACTTGTACTTTTTTTCTTGAACCGAGGGTTAATTAAAAATAATTTTTCTATCGTTAAGGTAAAAATAAATATGTTTCCATTATATCCTTTTCAAATCTTATTTTATAGAATTATACTGAATATATTAATATTATCATTGACGAGCTCAATATTTTTTTTTATTTTTTCTTGCCGTTTTACACCTATTAAAAGAAAAGTTAGTCAAGCACTTCCTCCCAATACACACACCAAACAAAAGAAAAGATAGTAAAACATTTTTTTTTCTTTTATTAATTGTTGTTGAACTATAAACTTTCTACGAAGACACGTAAAGCCTCATGAATTTAGGGAATATCCTCTTGTGCCACTCCTATTATTAAAGACGGATTTAGAATTTTTGAGGCATTAGATATTACGATATTTTAAATTTTGACATTTATTTTTTTTAAATTCGATTTAAATGAGTCGATCAAATGAAAACAATTTTGAACAAAGCATAAAACTTCAATAGTGTCATGAATATCACTAAAAAATATATTATCTATATATATGTTCTTGATGAGTTTTTGTATTCTAAAGCTATCGACTCGATTCTCAAAAAAAATAGATAATTAAAGCTAATACTCATAGAAAATCATAGTAAATAGAAGTAAGAATTAATAAAATTTGAAATGTCGATAGAAACTCATAAAGGAGAAAAGTGTCAAGGACAAATAAAGATAAAAATAAAATAATAAAGAAACAAGGAAAAGAAAAAATGATGAAAAAAAAGGGAAAAAA</genome_strand>
        <mrna_strand>ATTTTTTTTAAAAAAAAAAACATATTCCTAAGGGCTTATTCTACTACTAATTATTCTTCAGGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTGGGCTATGCTTCTTCAGGGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGGGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244062" ref_strand="+" ref_description="SGN-E244062 [cLEE-1-P5]">
      <seq>ttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaattcgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaatcgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="53990" stop="55067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54290" g_stop="54767" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E244062" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54290" e_stop="54767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTG</genome_strand>
        <mrna_strand>TTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTCGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATCGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241739" ref_strand="+" ref_description="SGN-E241739 [cLEE-10-C17](-)">
      <seq>ttttcagaaccatctccaaaatatgaaaacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagagagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagcctaaaaggtttaattatatatagttattataaaaattaagaaggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54154" stop="55120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54454" g_stop="54821" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E241739" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54454" e_stop="54821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTAT</genome_strand>
        <mrna_strand>TTTTCAGAACCATCTCCAAAATATGAAAACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAGAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTAAAAGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745695" ref_strand="+" ref_description="SGN-E745695 [GI|47105175]">
      <seq>ggaggtggggttgttggtggggttttcatgatatttgagtttgattttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtaatatatcgtgatttcaaaacatccaacattctactagacgcggattacaatgccaaactttctgattttggtcttgccaaagatggtcctgagggtgataagacacatgtttctactcgtgtcatgggaacgtatggttatgcagcccctgagtatgtgatgacagggcatctaacgtcaaagagtgacgtctacagttttggggtagttctacttgaaatgataacaggtaggagatcgatggacaagaaccgaccaaatggggaacacaaccttgttgaatgggcacggcctcatcttggtgaaagaagaaggttttacagattggtagaccctagacttgaaggtcatttttcaataaaaggtgctcagaaagctgcacagttggctgctcgttgccttagtcgtgatcccaaagttaggcctatgatgagtgaagtggtagaagccttgaagccattaccaaatcttaaagacatggccagctcatcctactatttccagacaatgcaagcagaccgagttggatcaagtccaagtaccaaaaatggcgttaggacacagggatcattctcgaggaatggacaacaacatcctagaagtctttcaatcccaaatggttctcatgcttctccataccatcaacagtttcctcagaactcaccaaaaccaaacggcaaaacttagtattattggattgacaagtaatctgtttctatcattcttttcgttttctctccagctatgaatatattttgttggccacctcccgttttgtcgttggatgaactggcaaaagggaaggagtgcacaattaacttaagttgtgatctttgaaaatgctgaactcccacttgaaaagaatgtattgtaagcggagctcaagtccatggagtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62323" stop="68975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62623" g_stop="62868" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="581" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="65075" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="717" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67233" g_stop="67369" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="854" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67370" i_stop="67445" i_length="76">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67446" g_stop="67569" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="978" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67570" i_stop="67940" i_length="371">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67941" g_stop="68668" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1706" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1710" polyA_stop="1725"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E745695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1706</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62623" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="65075"/>
          <exon e_start="67233" e_stop="67369"/>
          <exon e_start="67446" e_stop="67569"/>
          <exon e_start="67941" e_stop="68668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAGGTAGGGCTGAGATCTCGTAATTCCTACATTAGTTACCCTTTTGGTCGATTACAGTTTATCTGTATTATGTGGCAGTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTTAAAAGACCAATTTTTCTTTGAATAGTTAACTCCAGCTTATCTATATTATGTGGCACTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTCAAAACACCAAACTTGCTTTGAAAACCTTTCTGTACAAACTCCATAACCTGAGTCACAGACTCACAGTTGAAGAGTTTTCAATATGTTTGTTATTTGTTGACTAAAACTTTCATTGGATGGCTGATAAGTACCTCTCTTACTGATTGTAATTTGTCCTACTCATTTGTCTCAGGGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGA</genome_strand>
        <mrna_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG...................................................................................................................................................................................................................................................................................................................................................................................GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544243" ref_strand="+" ref_description="SGN-E544243 [TUS-66-H15]">
      <seq>tttttttttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62362" stop="67603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62662" g_stop="62868" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="542" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="65075" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="678" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67233" g_stop="67303" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="749" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E544243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62662" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="65075"/>
          <exon e_start="67233" e_stop="67303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307407" ref_strand="+" ref_description="SGN-E307407 [cLEY-12-E18]">
      <seq>ttttttttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62363" stop="65142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62663" g_stop="62868" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="541" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="64950" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="552" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E307407" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62663" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="64950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAA</genome_strand>
        <mrna_strand>TTTTTTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692024" ref_strand="+" ref_description="SGN-E692024 [LH_Ea07K06]">
      <seq>tttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaagggaaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagcgaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagctcctgttaaaccagggacagggcttactgttgctgtgaaaacactaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatcttgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctattcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtaatatatcgtgatttcaaaacatcccacatcctactagatgcggattacaatgccaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62368" stop="67673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62668" g_stop="62868" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="533" r_length="335" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="65075" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="669" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67233" g_stop="67369" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="806" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67370" i_stop="67445" i_length="76">
            <donor d_prob="0.664" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67446" g_stop="67463" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="824" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E692024" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62668" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="65075"/>
          <exon e_start="67233" e_stop="67369"/>
          <exon e_start="67446" e_stop="67463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTT</genome_strand>
        <mrna_strand>TTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAA-GGGAA-A-GAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGCGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCTCCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACACTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTTGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTATTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCCACATCCTACTAGATGCG............................................................................GATTACAATGCCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331346" ref_strand="+" ref_description="SGN-E331346 [cTOD-9-I7]">
      <seq>ttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggtttgcagctctcttcttttatttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62369" stop="65163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62669" g_stop="62868" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64863" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="564" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E331346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62669" e_stop="62868"/>
          <exon e_start="64500" e_stop="64863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</genome_strand>
        <mrna_strand>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708255" ref_strand="+" ref_description="SGN-E708255 [FA35BB01]">
      <seq>ccctaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttctaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagacagaccagtaatatatcgtgatttcaaaacatccaacattctactagacgcggattacaatgccaaactttctgattttggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62382" stop="67779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62678" g_stop="62868" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="526" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="65075" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="662" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67233" g_stop="67369" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="799" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67370" i_stop="67445" i_length="76">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67446" g_stop="67479" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="833" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E708255" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62678" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="65075"/>
          <exon e_start="67233" e_stop="67369"/>
          <exon e_start="67446" e_stop="67479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTG</genome_strand>
        <mrna_strand>CCCTAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCTAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGACAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306250" ref_strand="+" ref_description="SGN-E306250 [cLEY-13-J12]">
      <seq>gtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaacctctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62404" stop="65343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62704" g_stop="62868" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64834" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="501" r_length="336" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64940" g_stop="65044" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="606" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E306250" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62704" e_stop="62868"/>
          <exon e_start="64500" e_stop="64834"/>
          <exon e_start="64940" e_stop="65044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAA-CTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCT</genome_strand>
        <mrna_strand>GTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACCTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303205" ref_strand="+" ref_description="SGN-E303205 [cLEX-5-A17]">
      <seq>tgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgcggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62405" stop="65021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62705" g_stop="62868" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64721" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="386" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E303205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62705" e_stop="62868"/>
          <exon e_start="64500" e_stop="64721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCT</genome_strand>
        <mrna_strand>TGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGCGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303204" ref_strand="+" ref_description="SGN-E303204 [cLEX-5-A15]">
      <seq>gagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62415" stop="64976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62715" g_stop="62868" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64500" g_stop="64676" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="331" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E303204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62715" e_stop="62868"/>
          <exon e_start="64500" e_stop="64676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACT</genome_strand>
        <mrna_strand>GAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261546" ref_strand="+" ref_description="SGN-E261546 [cLEG-57-M20]">
      <seq>gggacggcacctgttaaaccaggaacggggcttactgttgctgtgaaaactctaaatcatgatggactacagggtcacaaagaatggctggcggaagtaaatttccttggcgatctcattcatcccaatttggttaaactaattggttactgtattgaagatgatcagaggttgctggtttatgaatttatgcctcgaggaagcttggaaaaccatctgttcaggaggtccctgcctcttccgtggtccatccgcatgaagatagcattgggtgcagcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtgatataccgtgatttcaaaacatccaacattcttctagatgcggattacaatgccaaactttctgattttggacttgccaaagatgctccagagggcgacaagacccatgtttctactcgtgtcatgggaacatatggttatgcagctccagagtatgtgatgacaggacatttgacatcaaagagtgatgtctacagtttcggtgtagttctgcttgaaatgatgacaggtaggagatccatggacaagaaccggccaaacggtgaacacaaccttgttgagtgggcacggccacatttgggtgaaagaagaaggttttataaattgatagatcctagacttgaaggccatttttctataaaaggtgcacagaaagctgcacagctggctgcacgatgccnttagccgggatcccaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64445" stop="68493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64745" g_stop="64834" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64940" g_stop="65075" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="226" r_length="136" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67233" g_stop="67369" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="363" r_length="137" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67370" i_stop="67445" i_length="76">
            <donor d_prob="0.664" d_score="0.92"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67446" g_stop="67569" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="487" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67570" i_stop="67940" i_length="371">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67941" g_stop="68194" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="742" r_length="255" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E261546" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64745" e_stop="64834"/>
          <exon e_start="64940" e_stop="65075"/>
          <exon e_start="67233" e_stop="67369"/>
          <exon e_start="67446" e_stop="67569"/>
          <exon e_start="67941" e_stop="68194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAGGTAGGGCTGAGATCTCGTAATTCCTACATTAGTTACCCTTTTGGTCGATTACAGTTTATCTGTATTATGTGGCAGTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTTAAAAGACCAATTTTTCTTTGAATAGTTAACTCCAGCTTATCTATATTATGTGGCACTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTCAAAACACCAAACTTGCTTTGAAAACCTTTCTGTACAAACTCCATAACCTGAGTCACAGACTCACAGTTGAAGAGTTTTCAATATGTTTGTTATTTGTTGACTAAAACTTTCATTGGATGGCTGATAAGTACCTCTCTTACTGATTGTAATTTGTCCTACTCATTTGTCTCAGGGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCC-TTAGTCGTGATCCCAAAGTT</genome_strand>
        <mrna_strand>GGGACGGCACCTGTTAAACCAGGAACGGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTACAGGGTCACAAAGAATGGCTG.........................................................................................................GCGGAAGTAAATTTCCTTGGCGATCTCATTCATCCCAATTTGGTTAAACTAATTGGTTACTGTATTGAAGATGATCAGAGGTTGCTGGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAACCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCTGCCTCTTCCGTGGTCCATCCGCATGAAGATAGCATTGGGTGCAGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTGATATACCGTGATTTCAAAACATCCAACATTCTTCTAGATGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGACTTGCCAAAGATGCTCCAGAGGGCGACAAGACCCATGTTTCTACTCGTGTCATGGGAACATATGGTTATGCAGCTCCAGAGTATGTGATGACAG...................................................................................................................................................................................................................................................................................................................................................................................GACATTTGACATCAAAGAGTGATGTCTACAGTTTCGGTGTAGTTCTGCTTGAAATGATGACAGGTAGGAGATCCATGGACAAGAACCGGCCAAACGGTGAACACAACCTTGTTGAGTGGGCACGGCCACATTTGGGTGAAAGAAGAAGGTTTTATAAATTGATAGATCCTAGACTTGAAGGCCATTTTTCTATAAAAGGTGCACAGAAAGCTGCACAGCTGGCTGCACGATGCCNTTAGCCGGGATCCCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544242" ref_strand="+" ref_description="SGN-E544242 [TUS-66-H15](-)">
      <seq>ttgaaatgataacaggtaggagatcgatggacaagaaccgaccaaatggggaacacaaccttgttgaatgggcacggcctcatcttggtgaaagaagaaggttttacagattggtagaccctagacttgaaggtcatttttcaataaaaggtgctcagaaagctgcacagttggctgctcgttgccttagtcgtgatcccaaagttaggcctatgatgagtgaagtggtagaagccttgaagccattaccaaatcttaaagacatggccagctcatcctactatttccagacaatgcaagcagaccgagttggatcaagtccaagtaccaaaaatggcgttaggacacagggatcattctcgaggaatggacaacaacatcctagaagtctttcaatcccaaatggttctcatgcttctccataccatcaacagtttcctcagaactcaccaaaaccaaacggcaaaacttagtattattggattgacaagtaatctgtttctatcattcttttcgttttctctccagctatgaatatattttgttggccacctcccgttttgtcgttggatgaactggcaaaagggaaggagtgcacaattaacttaagttgtgatctttgaaaatgctgaactcccacttgaaaagaatgtattgtaagcggagctcaagtccatggagtaaatattgtgtcgaatgtacctctccttcagctgattttcgcaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="67689" stop="69017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67989" g_stop="68714" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="749"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E544242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67989" e_stop="68714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA</genome_strand>
        <mrna_strand>TTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391810" ref_strand="+" ref_description="SGN-E391810 [TUS-24-H23]">
      <seq>aatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71445" stop="56076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71145" g_stop="71028" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="273" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69329" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="580" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69328" i_stop="68760" i_length="569">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68759" g_stop="68722" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="618" r_length="38" r_score="0.553"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E391810" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71145" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69329"/>
          <exon e_start="68759" e_stop="68722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGTTGTTTGAAAGATACAACATATATATATATTAAGGTATGCACTTACGTGATCAGCAGGCTAAGGATACATTGGTTTTTGATAACTCTACCTTCTACTGGACAAGTGTGAGGTCAAAAACAACACCACCAATAGATTTACGATGTTCAAAACATCTCGTGTTCTTACCGAATTTAAGATTCACGTGTCACTATCTTTTAAGGGTGCAATATAGACAACCTATCTCAACACAAGAATCGATGGCTCCAAACCAAAGGTTTCCTTTGGTAGTAGTCATGTCCTTGAAGGAAAAAAACTCAAGTATAGAGTATAATAGACTATGTTGCATACATCATTTCTCTTGAACTTATGCAACCTCTAAAATCATATGATGTTATGAGAAAATGTTAAAATTTTGTAAGTTATCCCAAACTTATGGCAACAGTCAAATATTGATATGTAAGGTTGAAAAATATATGAACAAACATTAAACGTTTTCAGGCCTAAAAGGAACAAGATCAAAATATAGGCCGAAAATA</genome_strand>
        <mrna_strand>AATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712318" ref_strand="+" ref_description="SGN-E712318 [FB04CA11]">
      <seq>gaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72466" stop="68942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72166" g_stop="72131" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="158" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="322" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="477" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69635" g_stop="69237" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="876" r_length="399" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E712318" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72166" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</genome_strand>
        <mrna_strand>GAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268557" ref_strand="-" ref_description="SGN-E268557 [cLEI-13-O20]">
      <seq>caatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70472" stop="68942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70172" g_stop="70146" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69635" g_stop="69241" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="422" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E268557" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268557" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70172" e_stop="70146"/>
          <exon e_start="69635" e_stop="69241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</genome_strand>
        <mrna_strand>CAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375474" ref_strand="+" ref_description="SGN-E375474 [TUS-34-J4](-)">
      <seq>actactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71499" stop="68961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71462" g_stop="71451" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="176" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="331" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69635" g_stop="69262" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="705" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E375474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71462" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTT</genome_strand>
        <mrna_strand>ACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276215" ref_strand="-" ref_description="SGN-E276215 [cLEN-21-B20]">
      <seq>aaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71369" stop="69029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71069" g_stop="71028" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="197" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69324" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="509" r_length="312" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E276215" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71069" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGAC</genome_strand>
        <mrna_strand>AAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398089" ref_strand="+" ref_description="SGN-E398089 [TUS-42-N12](-)">
      <seq>ttttgatgcaaagatcaacggtagcagattgtacctttttagaattttcagacggcatttcagaagcagtgccttgttcatacattgaatttgctgagagacttgtattaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcaggacgggttggaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgtggaaagaagatgatattgtagctttgaaagtattattatctgtaagtatcacaaatttactcgtggcatatacaccggatatatcaataaaatagtttggatgataaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70585" stop="69029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70285" g_stop="70146" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69635" g_stop="69324" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="452" r_length="312" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E398089" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70285" e_stop="70146"/>
          <exon e_start="69635" e_stop="69324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGAC</genome_strand>
        <mrna_strand>TTTTGATGCAAAGATCAACGGTAGCAGATTGTACCTTTTTAGAATTTTCAGACGGCATTTCAGAAGCAGTGCCTTGTTCATACATTGAATTTGCTGAGAGACTTGTATTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCAGGACGGGTTGGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTGGAAAGAAGATGATATTGTAGCTTTGAAAGTATTATTATCTGTAAGTATCACAAATTTACTCGTGGCATATACACCGGATATATCAATAAAATAGTTTGGATGATAAAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746564" ref_strand="+" ref_description="SGN-E746564 [GI|47104186]">
      <seq>aaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74040" stop="69029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73740" g_stop="73451" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="440" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="656" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="778" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="942" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="943" r_stop="1097" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69635" g_stop="69338" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1098" r_stop="1395" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1396" polyA_stop="1407"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E746564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1395</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73740" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</genome_strand>
        <mrna_strand>AAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378527" ref_strand="+" ref_description="SGN-E378527 [TUS-24-H23]">
      <seq>atcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgatnnnnaanaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71444" stop="69041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71144" g_stop="71028" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="272" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69338" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="570" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="631"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E378527" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71144" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</genome_strand>
        <mrna_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247687" ref_strand="+" ref_description="SGN-E247687 [cLEF-42-M7]">
      <seq>atcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71444" stop="69054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71144" g_stop="71028" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="272" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69354" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="554" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E247687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71144" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAAT</genome_strand>
        <mrna_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213429" ref_strand="+" ref_description="SGN-E213429 [cLEC-71-B21]">
      <seq>agaagtagagaaagaaatttcatgtttatcctggctaacttctatttttctctagtgaaggtcacttctaaataatctcatagatggtcagctttttatttacacggaacttcattttttttcttgtaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccnaagataaactgntgntgaaagaagatgatattgtagctctgaaagtattattatctggtactatcacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72001" stop="69091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71701" g_stop="71451" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="570" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69635" g_stop="69389" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="817" r_length="247" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E213429" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71701" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATT</genome_strand>
        <mrna_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCNAAGATAAACTGNTGNTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGGTACTATCACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260569" ref_strand="-" ref_description="SGN-E260569 [cLEG-54-L23]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgtgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71486" stop="69137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69437" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="523" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E260569" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTG-TGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262965" ref_strand="-" ref_description="SGN-E262965 [cLEG-59-E15]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgtgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71486" stop="69137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69437" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="523" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E262965" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262965" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTG-TGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254405" ref_strand="-" ref_description="SGN-E254405 [cLEG-27-K12]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71486" stop="69137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69437" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="524" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E254405" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254405" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255641" ref_strand="-" ref_description="SGN-E255641 [cLEG-36-L3]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71486" stop="69137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69437" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="524" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E255641" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255641" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263459" ref_strand="-" ref_description="SGN-E263459 [cLEG-69-K23]">
      <seq>ttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71465" stop="69137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71165" g_stop="71028" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="293" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69635" g_stop="69437" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="492" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E263459" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263459" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71165" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>TTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213489" ref_strand="+" ref_description="SGN-E213489 [cLEC-71-H18]">
      <seq>agaagtagagaaagaaatttcatgtttatcctggctaacttctatttttctctagtgaaggtcacttctaaataatctcatagatggtcagctttttatttacacggaacttcattttttttcttgtaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatggtcagctggatgactactccagattaaactgttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72001" stop="69144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71701" g_stop="71451" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70300" g_stop="70146" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="570" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69635" g_stop="69444" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="761" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E213489" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71701" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70146"/>
          <exon e_start="69635" e_stop="69444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTG</genome_strand>
        <mrna_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGGTCAGCTGGATGACTACTCC-AGATTAAACTGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274502" ref_strand="+" ref_description="SGN-E274502 [cLEN-11-F5]">
      <seq>ttgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctacgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcatgttagtccagaagctcaggaaatagtcaaaaagtccactaatatttcggactggggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72630" stop="69863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72330" g_stop="72131" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="322" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="486" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70300" g_stop="70163" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="624" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E274502" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72330" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAG</genome_strand>
        <mrna_strand>TTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTACGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCATGTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGTCAAAAAGTCCACTAATATTTCGGACTGGGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249854" ref_strand="+" ref_description="SGN-E249854 [cLEF-57-M16]">
      <seq>caaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72618" stop="69890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72318" g_stop="72131" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="310" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="474" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70300" g_stop="70190" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="585" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E249854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72318" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTG</genome_strand>
        <mrna_strand>CAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274456" ref_strand="+" ref_description="SGN-E274456 [cLEN-19-K12]">
      <seq>cattgattttatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72632" stop="69902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72332" g_stop="72131" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="488" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70300" g_stop="70202" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="587" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E274456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72332" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACA</genome_strand>
        <mrna_strand>CATTGATTTTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325658" ref_strand="+" ref_description="SGN-E325658 [cTOC-15-M19]">
      <seq>aaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcngaagaaaatggtttcaatttgaactctgaagggggtttttctaaaggtgagccctgatggtcttttgctgcaaaagtcaactgtagcagattctaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73824" stop="69946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73524" g_stop="73451" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="224" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="440" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="562" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="728" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70300" g_stop="70246" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="783" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E325658" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73524" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATC-GAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGG-TTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTT</genome_strand>
        <mrna_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCNGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAAGTCAACTGTAGCAGATTCTACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252843" ref_strand="+" ref_description="SGN-E252843 [cLEG-16-G10]">
      <seq>gtgctgctgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgatcctatgtcaaagatcttcttatattttggttactaacgaccagaggagctgatattccctgctaaaaaattgatagctttctggttttctcctcctaacgtgtcaacttacagtcgtgggagcggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccataagctcacgaaattattaaaaagtccactaatatttctcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttcacatgggaaaaaccctcgtattcggaatttcaactactgactagggagagtgagtatgctgcctgcacactcgtcaatggatatgcattgaatcatgtttccatatctacccatcggctggcatccaatctgagaagcattggaaatctaaatcaatctatcgcagaaaatggtttcaatctgaactctgaagggggttttctaaaagtgagccctgatggtcttttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72804" stop="69977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72505" g_stop="72453" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="269" r_length="216" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="391" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="555" r_length="164" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70300" g_stop="70277" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="579" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E252843" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72505" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
          <exon e_start="70300" e_stop="70277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGC</genome_strand>
        <mrna_strand>GTGCTGCTGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATCCTATGTCAAAGATCTTCTTATATTTTGGTTACTAACGACCAGAGGAGCTGATATTCCCTGCTAAAAAATTGATAGCTTTCTGGTTTTCTCCTCCTAACGTGTCAACTTACAGTCGTGGGAGCGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCATAAGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTATTAAAAAGTCCACTAATATTTCTCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTCACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGACTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGCACACTCGTCAATGGATATGCATTGAATCATGTTTCCATATCTACCCATCGGCTGGCATCCAATCTGAGAAGCATTGGAAATCTAAATCAATCTATCGCAGAAAATGGTTTCAATCTGAACTCTGAAGGGGGTTTTCTAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201597" ref_strand="+" ref_description="SGN-E201597 [cLEC-11-O7]">
      <seq>ggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72640" stop="70723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72340" g_stop="72131" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="332" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71028" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="496" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E201597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72340" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG</genome_strand>
        <mrna_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720369" ref_strand="+" ref_description="SGN-E720369 [FC10CE06]">
      <seq>gagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttaaattttggttacaaacgacgagaggagctgaaattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccaaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaaacattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74021" stop="70735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73722" g_stop="73451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="422" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="638" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="760" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71191" g_stop="71035" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="917" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E720369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73722" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTT</genome_strand>
        <mrna_strand>GAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAAATTTTGGTTACAAACGACGAGAGGAGCTGAAATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCAAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAACATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209371" ref_strand="+" ref_description="SGN-E209371 [cLEC-53-E4]">
      <seq>ggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72640" stop="70746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72340" g_stop="72131" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71572" g_stop="71451" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="332" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71191" g_stop="71046" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="478" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E209371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72340" e_stop="72131"/>
          <exon e_start="71572" e_stop="71451"/>
          <exon e_start="71191" e_stop="71046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTG</genome_strand>
        <mrna_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255798" ref_strand="+" ref_description="SGN-E255798 [cLEG-35-E7]">
      <seq>tttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcacgagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaactttcactcgtgggagtggggttcacgggccattgccaacaatatttatatccgaacttcttgttgatcagcttagtccagaagctcacgaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73814" stop="71181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73514" g_stop="73451" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="214" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="430" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71481" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="522" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E255798" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73514" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACC</genome_strand>
        <mrna_strand>TTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCACGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTTCACTCGTGGGAGTGGGGTTCACGGGCCATTGCCAACAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334446" ref_strand="+" ref_description="SGN-E334446 [cTOD-23-K3]">
      <seq>aaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatgggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73824" stop="71185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73524" g_stop="73451" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="224" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="441" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71485" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="529" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E334446" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73524" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCAT-GGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAA</genome_strand>
        <mrna_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252046" ref_strand="+" ref_description="SGN-E252046 [cLEG-8-F11]">
      <seq>aaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggnggtaaaaatttggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataattcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73963" stop="71195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73663" g_stop="73451" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="363" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72352" i_length="101">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72351" g_stop="72131" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="584" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71495" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="663" r_length="79" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E252046" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73663" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72351" e_stop="72131"/>
          <exon e_start="71572" e_stop="71495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAA-TCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTG</genome_strand>
        <mrna_strand>AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGN.....................................................................................................GGTAAAAATTTGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATTCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332024" ref_strand="+" ref_description="SGN-E332024 [cTOD-16-F22]">
      <seq>aaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcangaaataatcaaaaagtacactaatatttcgcactgtggaaaaagatatgctgcacttgcaagtgcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74041" stop="71201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73741" g_stop="73451" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="441" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="657" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71572" g_stop="71501" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="729" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E332024" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73741" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72131"/>
          <exon e_start="71572" e_stop="71501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGG</genome_strand>
        <mrna_strand>AAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAN..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAAGATATGCTGCACTTGCAAGTGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252590" ref_strand="+" ref_description="SGN-E252590 [cLEG-20-A24]">
      <seq>gtcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaagagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaagtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73965" stop="71851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73666" g_stop="73451" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="366" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72151" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="562" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E252590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73666" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</genome_strand>
        <mrna_strand>GTCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAAGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAAGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249849" ref_strand="+" ref_description="SGN-E249849 [cLEF-57-K16]">
      <seq>tcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcacgagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73965" stop="71851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73665" g_stop="73451" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="365" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72151" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="561" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E249849" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73665" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</genome_strand>
        <mrna_strand>TCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCACGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378215" ref_strand="+" ref_description="SGN-E378215 [TUS-39-N11]">
      <seq>atcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagatttcctgctaagaaagtgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtgggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73955" stop="71897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73655" g_stop="73451" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="355" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72196" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="506" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E378215" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73655" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTC</genome_strand>
        <mrna_strand>ATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTTCCTGCTAAGAAAGTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724163" ref_strand="+" ref_description="SGN-E724163 [FC23BA06]">
      <seq>gaaacccttgatcttaataacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaaaattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaacccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctaatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagtccttcttaaattttggttacgaacgacaagagaagctgagattccctgctaaaaaattgaaagctttctggttttctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74038" stop="71932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73754" g_stop="73451" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="455" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72232" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="570" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E724163" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73754" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATC-AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTC</genome_strand>
        <mrna_strand>GAAACCCTTGATCTTAATAACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAAATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAACCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTAATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTCCTTCTTAAATTTTGGTTACGAACGACAAGAGAAGCTGAGATTCCCTGCTAAAAAATTGAAAGCTTTCTGGTTTTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201922" ref_strand="+" ref_description="SGN-E201922 [cLEC-7-C15]">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74068" stop="71961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73451" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72261" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="554" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E201922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAA</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201942" ref_strand="+" ref_description="SGN-E201942 [cLEC-7-K19]">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74068" stop="72008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73451" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72346" g_stop="72308" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="507" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E201942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73451"/>
          <exon e_start="72602" e_stop="72453"/>
          <exon e_start="72346" e_stop="72308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTC</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331914" ref_strand="+" ref_description="SGN-E331914 [cTOD-16-G23]">
      <seq>taaagcccaattaattaacaccaaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtggtggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgctctgctgatgatgatcaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74015" stop="72185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73715" g_stop="73451" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72602" g_stop="72485" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="383" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E331914" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73715" e_stop="73451"/>
          <exon e_start="72602" e_stop="72485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTT</genome_strand>
        <mrna_strand>TAAAGCCCAATTAATTAACACCAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGGTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGCTCTGCTGATGATGATCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291395" ref_strand="+" ref_description="SGN-E291395 [cLET-2-H2]">
      <seq>aaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74039" stop="73177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73739" g_stop="73477" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E291395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73739" e_stop="73477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAG</genome_strand>
        <mrna_strand>AAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338307" ref_strand="+" ref_description="SGN-E338307 [cTOE-13-H21]">
      <seq>tcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="74060" stop="73181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73760" g_stop="73481" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E338307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73760" e_stop="73481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAAT</genome_strand>
        <mrna_strand>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549315" ref_strand="+" ref_description="SGN-E549315 [TUS-69-E14]">
      <seq>atgattttcaggtgagatctactgatcggaaaaaatgttgacagttactatagagcctctcgtcggccattatctccggcgaagcccaaagctatatccaaatcagaagaaaacctctcatttttctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcaaagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcaaattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggagtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgcaattgaaactcctttgcaaggagacacatttcaagaggtgaagatcgacataagttctaagtggtctatagcagctataaattttgtgttgaaggatgaggaaactggagtttggtatcagcacagaggtcgggacttcaagattcctcttgttatctgccttgacgatgatgctaatatcgttggtgttaaaaaggagtcgaacatatggtcaggatcactaggaaagctgtccaacatactccttaatgcagaagcttctccttctaaaggggaatcaagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="76920" stop="79961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77220" g_stop="77520" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77521" i_stop="78165" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78166" g_stop="78296" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="432" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78297" i_stop="78552" i_length="256">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78553" g_stop="78607" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="487" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78608" i_stop="78759" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78760" g_stop="78861" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="589" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78862" i_stop="79023" i_length="162">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79024" g_stop="79144" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="710" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79145" i_stop="79587" i_length="443">
            <donor d_prob="0.293" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79588" g_stop="79661" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="784" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E549315" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77220" e_stop="77520"/>
          <exon e_start="78166" e_stop="78296"/>
          <exon e_start="78553" e_stop="78607"/>
          <exon e_start="78760" e_stop="78861"/>
          <exon e_start="79024" e_stop="79144"/>
          <exon e_start="79588" e_stop="79661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAGGTGAGCTTCTGTGCTTAGATGTTTCAACTTTCTTCTGTATGTGTTATGCTGCTAACGAAGCATTCAACAAAAAGCATATTCATGTATGCTGCTGATCTGATCGCTTTAGTTATTACTTTTTTGGTGGTGATGTTTAGGTGTTGGTTTATTTTGATGATGCAGGATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAGGTTGTCCAGGGTACTTTTTGCTGTGAAATGCATACCAAATGTTCATATTTCTTGCCTCTCCCTTACATTCAATCCATGTCATCTCTTTCATGTTAACCTCACTGACTTTCTCCAGAGAAGAAAATGACTTAGATATGTTGAAACATATCTTTTCTAACAATGAAGATTGTTCACCCAGGCTAAAGAAGGGTTATATCTGTTTATGAAATATCTGTTTTTGCACTACTGTACTGTTGTGAATTTATGTACTTAACAAGTTATTTTGTATTATAATAGTTCAATTACTGTAATAGTTTCTAATCAAACCATTCCTCTGCTTAGCTGATATCTCAGCATGGATAGAAAGATCCTTAATGTCTTATCTTATTTGAGTAATTCTGTGACAAATTCAAGTTGTACTGAGAAAAGAAAGTAGAAGTTAAGTTGCTCTTCTTGCATTGCAGGATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</genome_strand>
        <mrna_strand>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTTGACAGTTACTATAGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAAAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAAATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGAGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG..................................................................................................................................................................GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGTCGGGACTTCAAGATTCCTCTTGTTATCTGCCTTGACGATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTAGGAAAGCTGTCCAACATACTCCTTAATGCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355739" ref_strand="+" ref_description="SGN-E355739 [cLHT-18-J1]">
      <seq>tgattttcaggtgagatctactgatcggaaaaaatgttgacaggtactatagagcctctcgtcggccattatctccggcgaagcccaaagctatatccaaatcagaagaaaacctctcatttttctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggagtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="76921" stop="78880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77221" g_stop="77520" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77521" i_stop="78165" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78166" g_stop="78296" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="431" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78297" i_stop="78552" i_length="256">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78553" g_stop="78580" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="459" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E355739" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77221" e_stop="77520"/>
          <exon e_start="78166" e_stop="78296"/>
          <exon e_start="78553" e_stop="78580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATG</genome_strand>
        <mrna_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTTGACAGGTACTATAGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGAGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365752" ref_strand="+" ref_description="SGN-E365752 [cLPT-8-H24]">
      <seq>aggccggcgatgcccattgtctatatccaaatcagaagaaaacctctcatttttctctaaattactccaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagggctagttccaccgatgctgtcgtcattgagacgtcggagcagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggggtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="76995" stop="78915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77292" g_stop="77520" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77521" i_stop="78165" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78166" g_stop="78296" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="361" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78297" i_stop="78552" i_length="256">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78553" g_stop="78607" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="416" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78608" i_stop="78759" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78760" g_stop="78767" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="424" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E365752" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77292" e_stop="77520"/>
          <exon e_start="78166" e_stop="78296"/>
          <exon e_start="78553" e_stop="78607"/>
          <exon e_start="78760" e_stop="78767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGGCGAAGCCCAAAG-CTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGC</genome_strand>
        <mrna_strand>AGGCCGGCGATGCCCATTGTCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTACTCCAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGGGCTAGTTCCACCGATGCTGTCGTCATTGAGACGTCGGAGCAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355740" ref_strand="+" ref_description="SGN-E355740 [cLHT-18-J3]">
      <seq>caaatcagaagaaaacctctcattggtctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgagtatcggcgtcgccggacggtacctatcagagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="77018" stop="78511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77318" g_stop="77520" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77521" i_stop="78165" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78166" g_stop="78211" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="249" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E355740" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77318" e_stop="77520"/>
          <exon e_start="78166" e_stop="78211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAG</genome_strand>
        <mrna_strand>CAAATCAGAAGAAAACCTCTCATTGGTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGAGTATCGGCGTCGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710945" ref_strand="+" ref_description="SGN-E710945 [FA57CA01]">
      <seq>aaatgagataaggagtttggtgagtgacatttcttctgaaaagagccgaaagacaaaaaatagggaaacacaggaaaccattcttcaagaaattgagaagctggctgctgaagcttatggtatattcagaagttcaatcccaacaatactagaaactgttgtttctgactctgaggttgtacaacctgacgtgaaagtaacttcaggaactggtacaggatttgaaattttgtgccagggttttaattgggaatctcataaatccggaagatggtacaaggagctgcatgataaagctgcagagttatcttcacttggtttcagtgtgatctggttacctccaccaactgactcagtgtcgccagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacagtaaagaaattccatgaagtgggcatcaaggttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtgcagttgttgcagatgatccacatttccagggaaggggcaacaaaagtagtggagataatttccatgctgctcctaacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggctgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaaacaactgaaccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82812" stop="87437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83111" g_stop="83515" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83516" i_stop="84155" i_length="640">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84156" g_stop="84345" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="595" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84346" i_stop="85987" i_length="1642">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85988" g_stop="86094" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="702" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86095" i_stop="87043" i_length="949">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87044" g_stop="87137" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="796" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E710945" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83111" e_stop="83515"/>
          <exon e_start="84156" e_stop="84345"/>
          <exon e_start="85988" e_stop="86094"/>
          <exon e_start="87044" e_stop="87137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAGGTGTGTATTTCTCTCTTGATTTTTCTTTGCTGTTGTACCAGCAAAGGAAATTTTTTGGTGATGCTTGTCCTTCACCAGAAGATTAGAAATAATCACAAATTCAGAGAGGATGCAGAGTAGCAAACTGGAATATTTGAGAATTTGCTTGTCCCCCACCGGATGAATAGTATATCCGTTCCTTACTTTGTAATTTGAAATCAATTGCAGTGAGATATTAATCCAGAGAATTCTTTTTACATTAAAATATTTTTAATATGTCAAAATAAGGTTTTCCAAAAGGGTTGTTGGAAAAGGTGAAAGGTCAAGGATAGGACTAATTGAGATTCTTGCTCAAACTAACATTATGGTTCTTTAGCCTTCTAATATGCTAACCTAGAATCCGTGTGCGCGATATATCATTTAGAATACATTAAGATCTTGAAAACTAAATGAAGCACTAAGAACACTATATTTGCATTGTTCACATTTTTTATCCTCAAATATTTCATCTTAGTTACATTACTATCTCTTTCATAATAAGGATATATTTGCCTTTTTACGCTAATACAAAACAGATCCTTGCTTCTCATGGTCCCTCTCCGTTCTTTCCTCTTTTGCCATTCCTCTCAATTTCGTTCTTCAGAAAAGCCTTCCTGTCAATCTCTTTCTATTGTCTTCCGCATTTGATCTCCGGCATCTGCTTCCTTGTTTTCCTATGCCATTTCCTTTTCTTCTGGGAATAACTTCATCATTAGATCGGTGGTGCTATCCATTTAATATACTGCCATCGTACGGTGGAACTTCATTGGTACCACCAACACCAGCTTCAATTGTGGACTAGTAGCGGGAGCCCATGGCTGAACCTTTTTCTTTGTACATTTTTTAACATTCATTGCTTGCTGTAGTCTTTGAAATAATCACAAATTTGTGCAATTGGAAATGGTCCAAGGCAAAAGAATGATTAACGTGTTTGCTATCATTGGATCATTGATACTCAAAATTATCTAGTGAGCGAGAAATCTGAAAAGAAGAAGAGAGTAACTAAGGGGAAACAGGAATGAGAAAAAAAGAAAACTTAAGAGGAAAGAAGTAGGAGATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTAACTTTAAGGGAAATTTGAGAAATGAAAAAATTGAGACAATGCTAACCTACTATGGAAAAACCCATAAATATGGTTTAAACTCCTTGGGGGTTGGGTGAAGCAGACAAGAGAGGCCAAAATCATCATCTTTTACCCATTGGCTGGTGCTCTTATCTTCCTTTCGGAGTGCATTATCTGATTTCTATTTGCTTACTTCCAAAAGTAGACGGCATAAGTGAGGGGAGGTACACTTTCCTATACTCGTTTGATTTTCATTTGTGCTTTTAAATTGGCTGGCTTACTCTTTAAAATATCTATTAATCGCTAAAGCAATGTTCTGCAACTCCTTTACTATGGTTTAGCCAGAATAACTTTGTGGCTAGCATGACATTTTTGCTTCCCTTTCTCTTAATGAGATACGGACTGGTTTTACAAGATCTGTTTAACCAGATGTCTGAACTACCTTCTTTTTTCTACAGGGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTAC</genome_strand>
        <mrna_strand>AAATGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCGCCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAACAACTGAACCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255721" ref_strand="+" ref_description="SGN-E255721 [cLEG-36-H15]">
      <seq>aaacacaggaaaccattcttcaataaattgagaagctggctgctgaagcttatggtatattcagaagttcaatcccaacaatactagaaactgttgtttctgactctgaggttgtacaacctgacgtgaaagtaacttcaagaactggtacaggatttgaaattttgtgccaaggttttaattgggaatctcataaatccggaagatggtacaaggagctgcatgataaagctgcagagttatcttcacttggtttcagtgtgatctggttacctccaccaactgactcagtgtcaccagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacagtaaagaaattccatgaagtgggcatcaaagttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82876" stop="84616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83176" g_stop="83515" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83516" i_stop="84155" i_length="640">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84156" g_stop="84316" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="501" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E255721" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83176" e_stop="83515"/>
          <exon e_start="84156" e_stop="84316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTG</genome_strand>
        <mrna_strand>AAACACAGGAAACCATTCTTCAATAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAAGAACTGGTACAGGATTTGAAATTTTGTGCCAAGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAAGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256520" ref_strand="+" ref_description="SGN-E256520 [cLEG-38-E23]">
      <seq>aaacacaggaaaccatttttcaagaaagagagaagctggctgcagaggcttatggtgtattcacaagttgagtcccaacaatactagaaactgttgtttctgactctgaggttgaacaacctgacgtcaaagtaacttcaggaactggtacaggatttgaaatcttgtgccagggttttaattgggaatctcataaatccggaagatggtacaatgagctgcatgataaagctgcagagctatcttcacttggtttcagtgtgatctggttacctgcaccaactgactcattgtcaccagagggatacatgcctatggatttatataacttaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82876" stop="83813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83176" g_stop="83513" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E256520" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83176" e_stop="83513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCC</genome_strand>
        <mrna_strand>AAACACAGGAAACCATTTTTCAAGAAAGAGAGAAGCTGGCTGCAGAGGCTTATGGTGTATTCACAAGTTGAGTCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGAACAACCTGACGTCAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATCTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAATGAGCTGCATGATAAAGCTGCAGAGCTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTGCACCAACTGACTCATTGTCACCAGAGGGATACATGCCTATGGATTTATATAACTTAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276047" ref_strand="+" ref_description="SGN-E276047 [cLEN-12-E8]">
      <seq>aacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactgtggctgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacacgattacctgtcggagtttggtggatatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85733" stop="88977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86033" g_stop="86094" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86095" i_stop="87043" i_length="949">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87293" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="312" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="435" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="603" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="0.96"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88763" g_stop="88776" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="617" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E276047" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86033" e_stop="86094"/>
          <exon e_start="87044" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="88776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAA</genome_strand>
        <mrna_strand>AACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTGTGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACACGATTACCTGTCGGAGTTTG.......................................................................................GTGGATATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254835" ref_strand="+" ref_description="SGN-E254835 [cLEG-33-F11]">
      <seq>tgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggcgtgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85738" stop="88977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86038" g_stop="86094" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86095" i_stop="87043" i_length="949">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87044" g_stop="87293" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="308" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="431" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="599" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88763" g_stop="88776" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="613" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E254835" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86038" e_stop="86094"/>
          <exon e_start="87044" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="88776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGC-TGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAA</genome_strand>
        <mrna_strand>TGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728429" ref_strand="+" ref_description="SGN-E728429 [LA17DB07]">
      <seq>attacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctcctagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttgnngttagcattgagtgactggagatgggaacagtgaatgtcgtanaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86812" stop="89368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87112" g_stop="87293" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="305" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="473" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88763" g_stop="89068" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="779" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E728429" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87112" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATT</genome_strand>
        <mrna_strand>ATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCTAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGNNGTTAGCATTGAGTGACTGGAGATGGGAACAGTGAATGTCGTANAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545751" ref_strand="+" ref_description="SGN-E545751 [TUS-68-M5]">
      <seq>ttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaaaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaacagtgaatgtcgtaaaaagctgtactgcagcgaattgtatctagctttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86817" stop="89358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87117" g_stop="87293" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="468" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88763" g_stop="89058" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="761" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E545751" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87117" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGC</genome_strand>
        <mrna_strand>TTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAA-AATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGG-AACAGTGAATGTCGT-AAAAAGCTGTACTGCAGCGAATTGTATCTAGCTTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312634" ref_strand="+" ref_description="SGN-E312634 [cLEZ-20-P19]">
      <seq>tggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctggtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataagaaatcttatatcactcagaaagcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86818" stop="88952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87118" g_stop="87293" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88508" g_stop="88652" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="444" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E312634" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87118" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGA</genome_strand>
        <mrna_strand>TGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTGGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAAGAAATCTTATATCACTCAGAAAGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699120" ref_strand="+" ref_description="SGN-E699120 [FA08CH11]">
      <seq>ctgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaattcaccatgtacactatacatagtctggtaaaaactgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86827" stop="89489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87127" g_stop="87293" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="458" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88763" g_stop="89189" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="884" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E699120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87127" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATG</genome_strand>
        <mrna_strand>CTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGG-AAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702475" ref_strand="+" ref_description="SGN-E702475 [FA18DC11]">
      <seq>cctcgtgccgtcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaatcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86891" stop="89517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87181" g_stop="87293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87416" g_stop="87538" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="236" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="404" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88763" g_stop="89217" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="859" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E702475" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87181" e_stop="87293"/>
          <exon e_start="87416" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGT-AAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGC</genome_strand>
        <mrna_strand>CCTCGTGCCGTCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAA-TCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546096" ref_strand="+" ref_description="SGN-E546096 [TUS-69-E14](-)">
      <seq>ttgagagatgtgaatactggcgactatccgatcagaaggggaaactcccggccgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatataacaaaagccgaaagggatgtttacgcagcagttattgatgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaatggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggtagcagttaatgtcgtaaaaatgctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccactacattatattgccttttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgatagaccgcctttttagcgtataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87120" stop="89628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87420" g_stop="87538" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="287" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88763" g_stop="89329" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="852" r_length="565" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E546096" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87420" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCC--TTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAAT</genome_strand>
        <mrna_strand>TTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACTCCCGGCCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATAACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGATGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAATGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGTAGCAGTTAATGTCGTAAAAATGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGT----ACCACTACATTATATTGCCTTTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAGACCGCCTTTTTAGCGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368604" ref_strand="+" ref_description="SGN-E368604 [TUS-23-L16]">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaattggcaaaagttctagcaaacacaaggctgtaaaattcttcagcgtatttatttttttggtacagaacgtctctcttaggttccatttggactcaacttaaaatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87134" stop="88390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87434" g_stop="88090" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E368604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87434" e_stop="88090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246139" ref_strand="+" ref_description="SGN-E246139 [cLEF-40-M24]">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87134" stop="88282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87434" g_stop="87982" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E246139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87434" e_stop="87982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700011" ref_strand="+" ref_description="SGN-E700011 [FA11DD10]">
      <seq>atcccatcttaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87145" stop="89560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87445" g_stop="87538" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="262" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88763" g_stop="89260" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="760" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E700011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87445" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTA</genome_strand>
        <mrna_strand>ATCCCATCTTAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349199" ref_strand="+" ref_description="SGN-E349199 [cTOS-2-I22]">
      <seq>tgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87220" stop="89594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87520" g_stop="87538" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88508" g_stop="88675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="187" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88763" g_stop="89294" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="719" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E349199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87520" e_stop="87538"/>
          <exon e_start="88508" e_stop="88675"/>
          <exon e_start="88763" e_stop="89294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGC</genome_strand>
        <mrna_strand>TGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368603" ref_strand="+" ref_description="SGN-E368603 [TUS-23-L16](-)">
      <seq>tttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88289" stop="89644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88589" g_stop="88675" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88763" g_stop="89352" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="677" r_length="590" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E368603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88589" e_stop="88675"/>
          <exon e_start="88763" e_stop="89352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTT</genome_strand>
        <mrna_strand>TTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549258" ref_strand="+" ref_description="SGN-E549258 [TUS-68-M5](-)">
      <seq>aagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtattgtatttgtattattacaattgagttgctgggttcagctactgaataaaagtctccagccttattggacaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88355" stop="89719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88655" g_stop="88675" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87">
            <donor d_prob="0.828" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88763" g_stop="89418" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="676" r_length="655" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="700"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E549258" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88655" e_stop="88675"/>
          <exon e_start="88763" e_stop="89418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTATTTGGACAGA</genome_strand>
        <mrna_strand>AAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTA-TTGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249333" ref_strand="+" ref_description="SGN-E249333 [cLEF-50-O11]">
      <seq>atatacagtttttaccaaactatgtatagtgtacatggtgaatttttccaaatacaacaatattaacagcaattattaccagactgttcatactcttgctattttagctccaacaacttcaatttgtgttgcagcaaagctagatacaatccgctgcagtacagcttttttacgacattcactgtttccatctccagtcactcaatgctaaccccaagcatttacaaatagcagaatatcggtaacagggaaagaaggcgattgttttcatgacaattcccaaaccttataattgttaccctcagcagccgttttccatctctgatgccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89488" stop="88558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89188" g_stop="88858" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E249333" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89188" e_stop="88858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACAGTTTTTACCAGACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</genome_strand>
        <mrna_strand>ATATACAGTTTTTACCAAACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282330" ref_strand="+" ref_description="SGN-E282330 [cLER-18-I23]">
      <seq>agctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaatacgcattgtaaaaactgtgtgatgtaaagaactcctgtgcaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtatcgctgtattggatttgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88723" stop="89664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89023" g_stop="89367" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E282330" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89023" e_stop="89367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTG</genome_strand>
        <mrna_strand>AGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATACGCATTGTAAAAACTGTGTGATGTAAAGAACTCCTGTGCAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATCGCTGTATTGGATTTGTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248392" ref_strand="-" ref_description="SGN-E248392 [cLEG-1-B17]">
      <seq>aaattgaagttgttggagctaaaatagcaagagtatgaccagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88764" stop="89644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89064" g_stop="89343" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="281" polyA_stop="299"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E248392" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248392" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89064" e_stop="89343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGT</genome_strand>
        <mrna_strand>AAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGACCAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359937" ref_strand="+" ref_description="SGN-E359937 [cLPP-9-C21]">
      <seq>ttaataaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89770" stop="91372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90070" g_stop="90400" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90994" g_stop="91072" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="419" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E359937" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90070" e_stop="90400"/>
          <exon e_start="90994" e_stop="91072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG--GA-GAAA-----AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGGT</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361321" ref_strand="+" ref_description="SGN-E361321 [cLPP-15-H23]">
      <seq>tttaataaaatcaaaaactaccaagggttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89770" stop="91370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90070" g_stop="90400" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="340" r_length="339" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90994" g_stop="91071" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="418" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E361321" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90070" e_stop="90400"/>
          <exon e_start="90994" e_stop="91071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAAC-AAAAAA-AAGG---AG-----AAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGG</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAGGGTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAA-TGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362698" ref_strand="+" ref_description="SGN-E362698 [cLPP-1-K20]">
      <seq>ttaataaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagagtaagtgtttttaagatatcgaaatcatgtatatatgtatctttttcgagacacgaggttagaatattgtatagaaatgaatctttttgtcttgtcaatctcgaaaaactagctgataaggagaggattgttgatatcacaatacataaagtatatattccgattatgtaaggacattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89770" stop="90882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90070" g_stop="90582" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E362698" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90070" e_stop="90582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG--GA-GAAA------AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGA</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATATATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTCGAAAAACTAGCTGATAAGGAGAGGATTGTTGATATCACAATACATAAAGTATATATTCCGATTATGTAAGGACATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362107" ref_strand="+" ref_description="SGN-E362107 [cLPP-11-E8]">
      <seq>taaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89774" stop="91352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90074" g_stop="90400" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90994" g_stop="91052" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="395" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E362107" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90074" e_stop="90400"/>
          <exon e_start="90994" e_stop="91052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-GA--G-----AAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATG</genome_strand>
        <mrna_strand>TAAAATCAAAAACTACCAAATCTTGGGTTTTTTCCCC-AAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365005" ref_strand="+" ref_description="SGN-E365005 [cLPP-17-L15]">
      <seq>ccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaaaaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaaaactgggctaataacaggaaggcactagcagactgtgctaagggatttggtcatggtacaactggtggtaaagatggtagattctatgttgtcaccgatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89789" stop="91542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90089" g_stop="90400" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90994" g_stop="91242" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="579" r_length="258" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E365005" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90089" e_stop="90400"/>
          <exon e_start="90994" e_stop="91242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-----GAGA--AA-AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAAT--G-------ACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</genome_strand>
        <mrna_strand>CCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGATGCAAGGCATACAATCCAATTGACAAGTGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAAGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363561" ref_strand="+" ref_description="SGN-E363561 [cLPP-3-E19]">
      <seq>ccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaaaaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaaaactgggctaataacaggaaggcactagcagactgtgctaaaggatttggtcatggtacaactggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89789" stop="91507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90089" g_stop="90400" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90994" g_stop="91207" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="544" r_length="223" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E363561" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90089" e_stop="90400"/>
          <exon e_start="90994" e_stop="91207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-----GAGA--AA-AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAAT--G-------ACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGT</genome_strand>
        <mrna_strand>CCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGATGCAAGGCATACAATCCAATTGACAAGTGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAAAGGATTTGGTCATGGTACAACTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331529" ref_strand="+" ref_description="SGN-E331529 [cTOD-9-B23]">
      <seq>ccattgtggatcatcttcgagaagtcgatgatcatcaggttgaaacaagaacttatgatcaacagtaataagacaattgatggcagaggtgtgtctgttcatgttgcatatggaggtggacttaccttacaatttgtgcacaatgtgattgtccacaacattagagttcatcacatcctttctaagaatggtggtatgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcctcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttcccacaagataaaatcatgcaagttacagttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91004" stop="92155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91304" g_stop="91690" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91691" i_stop="91791" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91792" g_stop="91855" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="451" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E331529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91304" e_stop="91690"/>
          <exon e_start="91792" e_stop="91855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCAT</genome_strand>
        <mrna_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547509" ref_strand="+" ref_description="SGN-E547509 [TUS-71-G21](-)">
      <seq>atgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91199" stop="93062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91499" g_stop="91690" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91691" i_stop="91791" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91792" g_stop="92034" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="435" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92035" i_stop="92478" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92479" g_stop="92761" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="718" r_length="283" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="742"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E547509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91499" e_stop="91690"/>
          <exon e_start="91792" e_stop="92034"/>
          <exon e_start="92479" e_stop="92761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTC</genome_strand>
        <mrna_strand>ATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547699" ref_strand="+" ref_description="SGN-E547699 [TUS-71-L11]">
      <seq>ttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttcatttttggggttgacatggagccgaatatttttttttggggggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91258" stop="93111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="91690" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91691" i_stop="91791" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91792" g_stop="92034" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="376" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92035" i_stop="92478" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92479" g_stop="92808" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="707" r_length="331" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E547699" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="91690"/>
          <exon e_start="91792" e_stop="92034"/>
          <exon e_start="92479" e_stop="92808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCA-TTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTC</genome_strand>
        <mrna_strand>TTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTCATTTTTGGGGTTGACATGGAGCCGAATATTTTTTTTTGGGGGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364962" ref_strand="+" ref_description="SGN-E364962 [cLPP-17-E18]">
      <seq>tcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91259" stop="92327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="91690" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91691" i_stop="91791" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91792" g_stop="92027" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="368" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E364962" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="91690"/>
          <exon e_start="91792" e_stop="92027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACAC</genome_strand>
        <mrna_strand>TCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547698" ref_strand="+" ref_description="SGN-E547698 [TUS-71-L11](-)">
      <seq>aaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttcatttttggggttgacatggagccgaatatttttttttgggggggtcttttacagtaagagaagaagaaaacggctaagacatctatctgttttctctgtttttttcgactattgctttctttcttcttcctagctggtttactctataggtgaaacagtgaagatggggaagaaaacgaaaaaaagtgggttctctggagctcaaagtttatctttttgtaacagaagttttggtttacgattttctnaataaatgtaattttccctgtttgaatttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91532" stop="93346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91832" g_stop="92034" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92035" i_stop="92478" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92479" g_stop="93041" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="765" r_length="562" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="787"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E547698" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91832" e_stop="92034"/>
          <exon e_start="92479" e_stop="93041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCA-TTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACG-AAAAAAGTGGGTTCTCTGGAGCTC-AAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCT-AATAAATGTAATTTTCCCTGTTTGAATTTCA</genome_strand>
        <mrna_strand>AAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTCATTTTTGGGGTTGACATGGAGCCGAATA-TTTTTTTTTGGGGGGG-TCTTTTACAGTAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCTGTTTTTTT-CGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAACAGTGAAGATGGGGAAGAAAACGAAAAAAAGTGGGTTCTCTGGAGCTCAAAGTTTATCTTTTTGTAACAGAAGTTTTGG--TTTACGATTTTCTNAATAAATGTAATTTTCCCTGTTTGAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219766" ref_strand="+" ref_description="SGN-E219766 [cLEL-24-O9](-)">
      <seq>tgggaccaggacatctatctgttttttcagtttttttccgactaatgctttcttttttcttcctaggtggttttctctataggtgaagcagtgaagatggggaagaaaacgaaaaaagtgggttttttggaggtcaagtttatctttttgtaacagaagttttggtttttaccattttttaataaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92534" stop="93318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92831" g_stop="93018" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E219766" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92831" e_stop="93018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTCTCTGGAGCTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCTAATAAATG</genome_strand>
        <mrna_strand>TGGGACCAGGACATCTATCTGTTTTTTCAGTTTTTTTCCGACTAATGCTTTCTTTTTTCTTCCTAGGTGGTTTTCTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTTTTTGGAGGTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACCATTTTTTAATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392543" ref_strand="+" ref_description="SGN-E392543 [TUS-35-G12](-)">
      <seq>cgatccgatgcttcatgcacaaagagtagctgctattaagaaagcaaaggggacacctgccgctaggaaacgtgcctcagaatccatgaaaagttacttccgtgatccagataaccgccgcaagagaagcatatccatgaaaggggtgaaattttactgtagaaattgtggacaggaaggacataggagtaactactgtccagaaattcgagacaatacggatagacattatagatgtggattatgtggaacaaagggtcataacagaagaacttgcttaaagttgagcttaattgtaccgaaaaagacagttaaggttaatcatcattgcagcaagtgtcaaagaagtggccataacagaagaacatgccaccaaaagaatgaattcgccactaaagtggttgcaacaatcaagactcgagtaaagagaacttatagctgcagcctgtgcttaggaaaaggacccaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatccctggatgtttcgactttgttttcatatctcgtttaatgcattattatggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgtttcaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaataataaaactgttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="94837" stop="92974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94537" g_stop="94498" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94497" i_stop="94406" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94405" g_stop="94303" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="143" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94302" i_stop="93859" i_length="444">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93858" g_stop="93268" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="735" r_length="592" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E392543" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94537" e_stop="94498"/>
          <exon e_start="94405" e_stop="94303"/>
          <exon e_start="93858" e_stop="93268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAGGTTTGACTTGCTAACTTCATATCTTAATGATTGACCTCTAGCTGTGTGTAACTATAGACATTCACCTTCTTGCCATGACACTTGTTATGCAGAAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAGGTGTAAAAAGTTTTAGCTCATGTCACACTTAAATTAATGATGTTTTTGCTATCTTCTTTGGATATATCATTAGCTGAAACGAAAATGTCGAGTGGCACTCCTTGAATGCTTCTTTAAGGGTCTTAAACTGTTACACTAAAGAAAATAATTGGTGTAAACCACTTTATAATGACTCCATACAATTAGCAGAAATGTACAACACAATATACGTGCAAGCTAGAGGACGTTCTTCTTGAGCTACATCATGGTCTCTATGTTTGTCTGTATACAGGACGTAAAAAGAGATGGTATAGAGAAAAAGAGAGAAAATATTTCATTCTTGTTTCCCTTCATTTACTTGTCACAGTAAGTTGAGTTCACCATTTGGTTTGTGTGGCGTAAATACTGCTGCACATCATTCTTGATATTCTGGTACAACATCTTACTGTCATTTTCTAATCGCAGGGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAAT-ATAAAACTGTTATAAATATCATCA</genome_strand>
        <mrna_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG............................................................................................AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGCCACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCCTGTGCTTAGGAAAAGGACCCAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTGGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTATGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTCAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATAATAAAACTGTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392313" ref_strand="+" ref_description="SGN-E392313 [TUS-35-I18](-)">
      <seq>gacaggaaggacataggagtaactactgtccagaaattcgagacaatacggatagacattatagatgtggattatgtggaacaaagggtcacccccgacgaacttgcttaaagttgagcttaattgtaccgaaaaagacagttaaggttaatcatcattgcagcaagtgtcaaagaagtggccataacagaagaacatgccaccaaaagaatgaattcgacactaaagtggttgcaacaatcaagactcgagtaaagagaacttatagctgcagcgtgtgcttaggaaaaggacacaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatcccttgatgtttcgactttgttttcatatctcgtttaatgcattattctggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgttttaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaatataaaactgttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="94131" stop="92974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93831" g_stop="93268" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E392313" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93831" e_stop="93268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</genome_strand>
        <mrna_strand>GACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCACCCCCGACGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370153" ref_strand="+" ref_description="SGN-E370153 [TUS-28-A24](-)">
      <seq>aatcaagactcgagtaaagagaacttatagctccaagcgtgtgcttaggaaaaggacacaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatcccttaatgtttcgactttgttttcatatctcgtttaatgcattattctggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgttttaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaatataaaactgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93893" stop="92974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93593" g_stop="93269" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E370153" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93593" e_stop="93269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGACTCGAGTAAAGAGAACTTATAGCTGC-AGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATC</genome_strand>
        <mrna_strand>AATCAAGACTCGAGTAAAGAGAACTTATAGCTCCAAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTAATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344094" ref_strand="+" ref_description="SGN-E344094 [cTOF-16-A13]">
      <seq>aaaaacatcaaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaatgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagataaaccaagcgtgtctaccaatctcccaacacagaagtcaatttgaagatcaccagatcactaaaattggatgattgcagagcctaaatgccaaaactggattatttagtaaaaggatgaagattatccatggcgatccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97403" stop="94229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97103" g_stop="96862" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95443" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="461" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95327" g_stop="95239" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="550" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94909" g_stop="94777" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="683" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94776" i_stop="94605" i_length="172">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94604" g_stop="94529" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="759" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E344094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97103" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95443"/>
          <exon e_start="95327" e_stop="95239"/>
          <exon e_start="94909" e_stop="94777"/>
          <exon e_start="94604" e_stop="94529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</genome_strand>
        <mrna_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGATAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCACCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370154" ref_strand="+" ref_description="SGN-E370154 [TUS-28-A24]">
      <seq>aaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccacacagaagtcaatttgaagatcagcagatcactaaaattggatgattgcagagcctaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97394" stop="94280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97094" g_stop="96862" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95443" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="452" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95327" g_stop="95239" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="541" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94909" g_stop="94777" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="673" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94776" i_stop="94605" i_length="172">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94604" g_stop="94580" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="698" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E370154" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97094" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95443"/>
          <exon e_start="95327" e_stop="95239"/>
          <exon e_start="94909" e_stop="94777"/>
          <exon e_start="94604" e_stop="94580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGC</genome_strand>
        <mrna_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCC-ACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371180" ref_strand="+" ref_description="SGN-E371180 [TUS-28-B23]">
      <seq>aaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttaccttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcacgctatgtatgacccttcagaggagctttttggacttgatgctgatttgcaaccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagacgacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97394" stop="94511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97094" g_stop="96862" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95443" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="452" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95327" g_stop="95239" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="541" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94909" g_stop="94811" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="640" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E371180" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97094" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95443"/>
          <exon e_start="95327" e_stop="95239"/>
          <exon e_start="94909" e_stop="94811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</genome_strand>
        <mrna_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTACCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAC............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAACCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGACGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392314" ref_strand="+" ref_description="SGN-E392314 [TUS-35-I18]">
      <seq>caaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacaacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97395" stop="94518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97095" g_stop="96862" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95443" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="453" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95327" g_stop="95239" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="542" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94909" g_stop="94818" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="635" r_length="93" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E392314" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97095" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95443"/>
          <exon e_start="95327" e_stop="95239"/>
          <exon e_start="94909" e_stop="94818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACC-AATCTC</genome_strand>
        <mrna_strand>CAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACAACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270026" ref_strand="+" ref_description="SGN-E270026 [cLEM-7-N18]">
      <seq>gcaaaaagaaaataaaatctccattttaagggacttcttcaatgtgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97395" stop="94552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97096" g_stop="96862" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95443" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="454" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95327" g_stop="95239" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="543" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94909" g_stop="94852" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="601" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E270026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97096" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95443"/>
          <exon e_start="95327" e_stop="95239"/>
          <exon e_start="94909" e_stop="94852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGAC</genome_strand>
        <mrna_strand>GCAAAAAGAAAATAAAATCTCCATTTTAAGGGACTTCTTCAATGTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270871" ref_strand="+" ref_description="SGN-E270871 [cLEM-6-B23]">
      <seq>aaaaataaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97394" stop="95182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97094" g_stop="96862" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96465" g_stop="96410" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95605" g_stop="95482" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="413" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E270871" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97094" e_stop="96862"/>
          <exon e_start="96465" e_stop="96410"/>
          <exon e_start="95605" e_stop="95482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATC</genome_strand>
        <mrna_strand>AAAAATAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368165" ref_strand="+" ref_description="SGN-E368165 [TUS-22-K6]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaggggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgactgaaattggatctatcatcagccttggggcanaagattcatgtgagttttttcatgatccanacaaaggaagaagtgatgaaggtagagtcagggaagtgttgaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97457" stop="100295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97757" g_stop="98138" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98139" i_stop="99117" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99118" g_stop="99215" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99216" i_stop="99323" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99324" g_stop="99416" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="573" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99417" i_stop="99645" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99646" g_stop="99740" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="668" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99741" i_stop="99962" i_length="222">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99963" g_stop="99995" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="701" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E368165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97757" e_stop="98138"/>
          <exon e_start="99118" e_stop="99215"/>
          <exon e_start="99324" e_stop="99416"/>
          <exon e_start="99646" e_stop="99740"/>
          <exon e_start="99963" e_stop="99995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGT</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCANAAGATTCATGTGAGTTTTTTCATGATCCANACAAAGGAAGAAG..............................................................................................................................................................................................................................TGATGAAGGTAGAGTCAGGGAAGTGTTGAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233565" ref_strand="+" ref_description="SGN-E233565 [cLED-9-H23]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaggggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97457" stop="99965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97757" g_stop="98138" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98139" i_stop="99117" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99118" g_stop="99215" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99216" i_stop="99323" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99324" g_stop="99416" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="573" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99417" i_stop="99645" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99646" g_stop="99665" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="593" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E233565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97757" e_stop="98138"/>
          <exon e_start="99118" e_stop="99215"/>
          <exon e_start="99324" e_stop="99416"/>
          <exon e_start="99646" e_stop="99665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGAC</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233541" ref_strand="+" ref_description="SGN-E233541 [cLED-9-K8]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97457" stop="98439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97757" g_stop="98138" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E233541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97757" e_stop="98138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237463" ref_strand="+" ref_description="SGN-E237463 [cLED-19-K13]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97457" stop="98373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97757" g_stop="98073" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E237463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97757" e_stop="98073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAA</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240528" ref_strand="+" ref_description="SGN-E240528 [cLED-21-E17]">
      <seq>tttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97461" stop="99515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97761" g_stop="98138" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98139" i_stop="99117" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99118" g_stop="99215" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="476" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E240528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97761" e_stop="98138"/>
          <exon e_start="99118" e_stop="99215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT</genome_strand>
        <mrna_strand>TTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244485" ref_strand="+" ref_description="SGN-E244485 [cLED-38-A5]">
      <seq>cttatacactactctaatagatcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaagggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="97467" stop="99702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97767" g_stop="98138" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98139" i_stop="99117" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99118" g_stop="99215" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="470" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99216" i_stop="99323" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99324" g_stop="99402" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="549" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E244485" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97767" e_stop="98138"/>
          <exon e_start="99118" e_stop="99215"/>
          <exon e_start="99324" e_stop="99402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATT</genome_strand>
        <mrna_strand>CTTATACACTACTCTAATAGATCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAAGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273946" ref_strand="+" ref_description="SGN-E273946 [cLEN-7-B14]">
      <seq>tcaccagagttctcacctttagattcaagggccttcaagctgtcaaaagaaggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgactgaaattggatctatcatcagccttggggcaaaagattcatgtgagtttttccatgatccaaacaaaggaagaagtgatgaaagtagagtcaggaaagtgttgaaggttgagccacttccagatggctccggtcacttctttaatctcagtgttcagaacaagcttattaatttggacgagaacatttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccatacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98892" stop="101187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99192" g_stop="99215" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99216" i_stop="99323" i_length="108">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.822" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99324" g_stop="99416" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="117" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99417" i_stop="99645" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99646" g_stop="99740" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="212" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99741" i_stop="99962" i_length="222">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99963" g_stop="100036" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="286" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100037" i_stop="100134" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100135" g_stop="100223" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="375" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100224" i_stop="100867" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100868" g_stop="100887" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="395" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E273946" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99192" e_stop="99215"/>
          <exon e_start="99324" e_stop="99416"/>
          <exon e_start="99646" e_stop="99740"/>
          <exon e_start="99963" e_stop="100036"/>
          <exon e_start="100135" e_stop="100223"/>
          <exon e_start="100868" e_stop="100887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTAATGCCTTCTTCCTTCATTCTATTACAGTGAAAATTGGACATCTATTTTGAACTATAGAACATGACTTGTTTGCCTTCCATCCTAAATGAAAACAGGTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTT</genome_strand>
        <mrna_strand>TCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAAGGGCCTTCAAGCTGTCAAAAGAAGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG..............................................................................................................................................................................................................................TGATGAAAGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA..................................................................................................GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368164" ref_strand="+" ref_description="SGN-E368164 [TUS-22-K6](-)">
      <seq>actgaaattggatctatcatcagccttggggcaaaagattcatgtgagtttttccatgatccaaacaaaggaaaaagtgatgaaggtagagtcaggaaagtgttgaaggttgagccacttccagatggctccggtcacttctttaatctcagtgttcagaacaagcttattaatttggacgagaacatttacatcccagttacaaaggcagagttcgcagtttttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttttggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttttaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaatgtatttggctctttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="99364" stop="101563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99664" g_stop="99740" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99741" i_stop="99962" i_length="222">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99963" g_stop="100036" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="151" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100037" i_stop="100134" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100135" g_stop="100223" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="240" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100224" i_stop="100867" i_length="644">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100868" g_stop="101263" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="636" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="665"/>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E368164" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99664" e_stop="99740"/>
          <exon e_start="99963" e_stop="100036"/>
          <exon e_start="100135" e_stop="100223"/>
          <exon e_start="100868" e_stop="101263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTAATGCCTTCTTCCTTCATTCTATTACAGTGAAAATTGGACATCTATTTTGAACTATAGAACATGACTTGTTTGCCTTCCATCCTAAATGAAAACAGGTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</genome_strand>
        <mrna_strand>ACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAAAAG..............................................................................................................................................................................................................................TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA..................................................................................................GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTTTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTTTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTTTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351322" ref_strand="+" ref_description="SGN-E351322 [cTOS-12-A17]">
      <seq>atttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttctggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttctaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="99870" stop="101545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100170" g_stop="100223" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100224" i_stop="100867" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100868" g_stop="101253" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="440" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E351322" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100170" e_stop="100223"/>
          <exon e_start="100868" e_stop="101253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTG</genome_strand>
        <mrna_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351527" ref_strand="+" ref_description="SGN-E351527 [cTOS-12-A16]">
      <seq>atttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttctggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttctaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="99870" stop="101545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100170" g_stop="100223" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100224" i_stop="100867" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100868" g_stop="101253" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="440" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E351527" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100170" e_stop="100223"/>
          <exon e_start="100868" e_stop="101253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTG</genome_strand>
        <mrna_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543254" ref_strand="+" ref_description="SGN-E543254 [TUS-64-P15]">
      <seq>gaaagatagagcaatggattctactaagaaggatgaagataagctaaattcaacaaaatgtgagatatatgaagccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaatacaaagaatattattgcaacaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtacttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggcttgagcttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaacgacgagtattgatacaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatacgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggacaaaaaatagctaaagggaatccatgccctaaggcttactatcgttgcaccgtctccccctcatgcccagtcaggaaacacgttcaaagatgttctaaagacacgtccattttgaccactacatatgaaggaacacataatccccccctttcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104247" stop="106900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104547" g_stop="104577" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="105238" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105239" g_stop="105754" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105755" i_stop="105907" i_length="153">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105908" g_stop="106021" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="661" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106022" i_stop="106521" i_length="500">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106522" g_stop="106600" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="740" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E543254" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104547" e_stop="104577"/>
          <exon e_start="105239" e_stop="105754"/>
          <exon e_start="105908" e_stop="106021"/>
          <exon e_start="106522" e_stop="106600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAGGTACTACTAGCAGCTCGATTAGTTGGTTAGCTATACTTGAACTTTTACGTTATTGATGGGCGTTTGATTTTTAACCTTGTAATTCCCTCCGTCATTTCCCCTTAATTCCTCTACCCCTATCTAATAATGTTAAGAAAACAATAAATAGAAATGTACTATTACTTTTTCTTAATAATTAAAAAATTTTATACCGTCAGCATATATATAAATCTTCTATTCGAGGTGTATAATCAAGAAATTGTCCATACAATTATTTTTTTTTAAAAAAATGATTTGCTTTAGTCATTGGTTATCAAATTGGTTCATATTTTAAATTTTCAACTTAGAAATAAAGAATTTAAAGTTGGGATATTGAGGAGTTCTTCAAATTTCAACTTCTATAATTCAAGTTTTTGCCTTTACAAAATTTAACTATTTTTTTCGAGTAAAATTCACGTCCAAACATATTAAACGTCTATCTCTGACCCCTTTTTTTTCTCATGTTTTGTGATCTACGATAGGTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</genome_strand>
        <mrna_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAAGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCCCCCCCTTTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543005" ref_strand="+" ref_description="SGN-E543005 [TUS-64-J14]">
      <seq>gaaagatagagcaatggattctactaagaaggatgaagataagctaaattcaacaaaatgtgagatatatgaagccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaatacaaagaatattattgcaacaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtacttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggcttgagcttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaacgacgagtattgatacaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatacgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggacaaaaaatagctaaagggaatccatgccctagggcttactatcggtgcaccgtctccccctcatgcccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104247" stop="106311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104547" g_stop="104577" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="105238" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105239" g_stop="105754" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105755" i_stop="105907" i_length="153">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105908" g_stop="106011" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="651" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E543005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104547" e_stop="104577"/>
          <exon e_start="105239" e_stop="105754"/>
          <exon e_start="105908" e_stop="106011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGT</genome_strand>
        <mrna_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGGTGCACCGTCTCCCCCTCATGCCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302437" ref_strand="+" ref_description="SGN-E302437 [cLEW-27-K10]">
      <seq>aaagaaagagcaatggattctactaagaaggatgaagataagcctaaattcaaccaaaatgtgagatatatgaagcccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaataccaaagaatattattgcaaccaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtccttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggccttgagccttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaaccgaccgagtattgataccaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatccgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggccaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104248" stop="106246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104548" g_stop="104577" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104578" i_stop="105238" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105239" g_stop="105754" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="556" r_length="526" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105755" i_stop="105907" i_length="153">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105908" g_stop="105947" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="596" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E302437" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104548" e_stop="104577"/>
          <exon e_start="105239" e_stop="105754"/>
          <exon e_start="105908" e_stop="105947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAG-CTAAATTCAA-CAAAATGTGAGATATATGAAG-CCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATA-CAAAGAATATTATTGCAA-CAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGG-CTTGAG-CTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAA-CGA-CGAGTATTGATA-CAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAA</genome_strand>
        <mrna_strand>AAAGAAAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCCTAAATTCAACCAAAATGTGAGATATATGAAGCCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACCAAAGAATATTATTGCAACCAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTCCTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCCTTGAGCCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACCGACCGAGTATTGATACCAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATCCGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543004" ref_strand="+" ref_description="SGN-E543004 [TUS-64-J14](-)">
      <seq>actacaaacctcatcaagtactattcttcatcatccaattcctactccacattgtgtaataatatcaaaagtgaaattggacctctttcatatctagggaggccatgttattctaatcagccttatattacttcaaaagaacaatcagaacatgatcgttcagtacagtgccggagtcagaatttttgatgaattaattcaaaaaaaaatgcaaaagtatcacataggatttgatcatgtgacctaaaatgaattttggactactttttgtacattaaagtagaatcttcttttatacgaaaggaagactatttttgtttttattttatatgtacggtataatttttttgcaaaagatatttctttatcaacttatagaaatcctcaacaattgtatttatatgacactatttactttttagtctctcataaaaaaaggtctttttcatattcggaaaaaattgaactttaaaacttcccatgttgctcttagcaacatgtttttaagactcttttaaactccgtgcctaatcgggttcaacataagatgaaatggattaagtactaatgaagagtagtagtaatagatttttctaacggtgaattagtgagaaatttgtgttatacaacatgtttttccatttatttccaccaaatcagttcactgggaatatgctagattctcaatgaaatagtaaattttctaattttattgtatgagagcattactatttttcatcaattcaatcaaaatatcagtgaacatatcatgaccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="106543" stop="107924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106843" g_stop="107630" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E543004" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106843" e_stop="107630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAA-CTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</genome_strand>
        <mrna_strand>ACTACAAACCTCATCAAGTACT-ATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTCTTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543253" ref_strand="+" ref_description="SGN-E543253 [TUS-64-P15](-)">
      <seq>caaaagtgaaattggaccttcttcatatctagggaggccatgttattctaatcagcgttatattgcgtcaaaagaacaatcagaacatgatcgttcagtacagtgccggagtcagaatttttgatgaattaattcaaaaaaaaatgcaaaagtatcacataggatttgatcatgtgacctaaaatgaattttggactactttttgtacattaaagtagaatcttcttttatacgaaaggaagactatttttgtttttattttatatgtacggtataatttttttgcaaaagatatttctttatcaacttatagaaatcctcaacaattgtatttatatgacactatttactttttagtctctcataaaaaaaggtctttttcatattcggaaaaaattgaactttaaaacttcccatgttgctcttagcaacatgtttttaagactcttttaaactccgtgcctaatcgggttcaacataagatgaaatggattaagtactaatgaagagtagtagtaatagatttttctaacggtgaattagtgagaaatttgtgttatacaacatgtttttccatttatttccaccaaatcagttcactgggaatatgctagattctcaatgaaatagtaaattttctaattttattgtatgagagcattactatttttcatcaattcaatcaaaatatcagtgaacatatcatgaccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="106608" stop="107924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106908" g_stop="107630" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E543253" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106908" e_stop="107630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</genome_strand>
        <mrna_strand>CAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCGTTATATTGCGTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541742" ref_strand="+" ref_description="SGN-E541742 [TUS-62-L3](-)">
      <seq>tgctggaccagaccactttaccagcgcgaaggaagcagaaaaggaagacatttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcttgtacagcacagttcagtaacttactgaataaatgattttctttctacatcaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109002" stop="1453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108702" g_stop="108679" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108678" i_stop="108568" i_length="111">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.380" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108567" g_stop="108456" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="136" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108455" i_stop="108167" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108166" g_stop="107748" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="554" r_length="418" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E541742" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108702" e_stop="108679"/>
          <exon e_start="108567" e_stop="108456"/>
          <exon e_start="108166" e_stop="107748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGACCAGACCACTTTACCAGGTATTATTCTGCAGCTACATTCACCTTACTTTCTCTGTTTCGTGCTATCATTTCTGAATCATCTCGTGCTATCATTTCTGAATCATCTGCTAATACAAACTTCATATTCAGCGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACCAAAGTTTAC</genome_strand>
        <mrna_strand>TGCTGGACCAGACCACTTTACCAG...............................................................................................................CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTT-CTTTCTACATCAAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714941" ref_strand="+" ref_description="SGN-E714941 [FB12DE08]">
      <seq>cgcgaaggaagcagaataggaagacatttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcttgtacagcacagttcagtaacttactgaataaatgattttgctttctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108867" stop="107465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108567" g_stop="108456" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108455" i_stop="108167" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108166" g_stop="107755" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="524" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E714941" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108567" e_stop="108456"/>
          <exon e_start="108166" e_stop="107755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACCAA</genome_strand>
        <mrna_strand>CGCGAAGGAAGCAGAATAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299803" ref_strand="+" ref_description="SGN-E299803 [cLEW-1-G3](-)">
      <seq>catttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcaagtacagcaaaattcagtaacttactgaataaatgattttgctttgtacatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108843" stop="107465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108543" g_stop="108456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108455" i_stop="108167" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108166" g_stop="107757" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="498" r_length="410" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E299803" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108543" e_stop="108456"/>
          <exon e_start="108166" e_stop="107757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACC</genome_strand>
        <mrna_strand>CATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCAAGTACAGCAAAATTCAGTAACTTACTGAATAAATGATTTTGCTTTGTACATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704024" ref_strand="+" ref_description="SGN-E704024 [FA23AF03]">
      <seq>attagtattgctaagaatcagcttagtggtgctcttccaggaagtgtgtcttgtagcaacaatctaaaatttgtcgatttttcgagtaatttattgattggaaagttgcctacttgtcttggatcaagttcaagaaacaggacagtgattaatgtttggaattgtttgtcaagtactagtactaagtctcaacatccacatacattttgtgagaaacaagctatagctgttaagccccctccaagaactagtggtgaaaaggaacaatccacagttaagcttggtgttgttttaggacttattgctggtattgttgtagttgtgggtgcatttggtttgctgatctttttcattgtgaagaaggttatgagaaatagagttgaaagttatagaaatgacagctttgcttttgagaagaattcaaccctttcaaaaactactgatggagggaaggcaaggaggacaatgagaatggtatcattaggacttccaccatatcatgttttcactttagaggaaatggaagaagcaacaaacagttttgatccaactaatctggttggagaaggttcccagggtcagctatatagaggttggcttagagatggatcagtggtcctagtaaaatgtctgaaattgaagcagaagcattcacctcaaattctgcagcagcacatggagatgatatcaaagctaaggcatcgacatttagtcagtgttcttggacactgtgttgttacttaccaagatcatccaaatacagctagcactgtatttattgtgcttgaaaacgtcgtcaatggatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="110897" stop="108893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110597" g_stop="110150" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110149" i_stop="109862" i_length="288">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109861" g_stop="109728" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="582" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109727" i_stop="109420" i_length="308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109419" g_stop="109193" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="809" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E704024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110597" e_stop="110150"/>
          <exon e_start="109861" e_stop="109728"/>
          <exon e_start="109419" e_stop="109193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAGGTATATTTCCTTAATGAATCTTGAATAATGATAAGGGTCTATCGGAAATAGCCTCTCTACCTCCCGAGGTAGGGGTAAGGTCTGCGAACACTCCCCCGCTAGACCCCACACACTGTGTATGTTGTTGTTGTTGAATCTTGAATAGTGATATCGGAAACAACCTCTCTACCTCCCTAGGCAGGGGTAAGGTCTGACCCCACTTGTGGAATTACGCGGGGTATGTCGTTGAATCTTGAATAGTGATAGTGCATCATTATGACAATTTTTTCGATAACTTGATTTAATCAGGGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAGGTAAAAATGTTGATTCATTATAAAAAGCAAAATGAAAATGATATTTATTACTATATCCTGTCCATATTATTCGTCATTTTGGACGTTGAACGATTCGAATCTAGTCAAATACATAATCTACATGAGTATACGAGTCCGTAGATACTCATATTGCTATACTTTTAGTCTAGACCCAAAAAGTCAGACCCGAACAACTGTTGACATTTTAGAAAAACTAAAGATAGTAATATGGATATGCTTTTCATAAATCTTGGTGAATACAAACTTTGTGTTTTGAACATTGGGATTGATGTTATTATTAATGACAGCTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</genome_strand>
        <mrna_strand>ATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG................................................................................................................................................................................................................................................................................................GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG....................................................................................................................................................................................................................................................................................................................CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319194" ref_strand="+" ref_description="SGN-E319194 [cTOB-16-D6]">
      <seq>ttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttaggaccaaagtttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaacttgttggtccaatgcctgcttttctgttttcacttccagcaattcagtctattagtattgctaagaatcagcttagtggtgctcttccaggaagtgtgtcttgtagcaacaatctaaaatttgtcgatttttcgagtaatttattgattggaaagttgcctacttgtcttggatcaagttcaagaaacaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111275" stop="110154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110975" g_stop="110454" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E319194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110975" e_stop="110454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACA</genome_strand>
        <mrna_strand>TTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707818" ref_strand="+" ref_description="SGN-E707818 [FA34AC04]">
      <seq>atcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgatgtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttaggaccaaagtttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaacttgttggtccaatgcctgcttttctgttttcacttccagcaattcagtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111771" stop="110295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="110595" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E707818" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="110595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATT</genome_strand>
        <mrna_strand>ATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGATGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304468" ref_strand="+" ref_description="SGN-E304468 [cLEX-12-F14]">
      <seq>acattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttacgaccaaaggttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111273" stop="110348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110973" g_stop="110648" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E304468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110973" e_stop="110648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAAC</genome_strand>
        <mrna_strand>ACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTACGACCAAAGGTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316494" ref_strand="+" ref_description="SGN-E316494 [cTOA-25-K21]">
      <seq>ctgtttcttggtttgcttttgatttttcaagttccattttcatcttctcagttagttcctgcagaaagaaaaatcctttttcaaattcaacaattatcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttgataacaaaaaatccccttttgaatctttaaaatcctcatctccacaagcccgttctgggaaattttcaattgattcatttttcactggtgatactaagctttctagtgtaaaaaaactatctttagagtctcttggtttgaggggatcattgcctgctaagattagtaggttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttggtttagctagaaatttgcttaatggaagtgtaccagatctgaaagggctaaagttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111661" stop="110522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111362" g_stop="110822" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E316494" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111362" e_stop="110822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTT-TCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTG</genome_strand>
        <mrna_strand>CTGTTTCTTGGTTTGCTTTTGATTTTTCAAGTTCCATTTTCATCTTCTCAGTTAGTTCCTGCAGAAAGAAAAATCCTTTTTCAAATTCAACAATTATCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGATAACAAAAAATCCCCTTTTGAATCTTTAAAATCCTCATCTCCACAAGCCCGTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGGTGATACTAAGCTTTCTAGTGTAAAAAAACTATCTTTAGAGTCTCTTGGTTTGAGGGGATCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGGTTTAGCTAGAAATTTGCTTAATGGAAGTGTACCAGATCTGAAAGGGCTAAAGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312697" ref_strand="+" ref_description="SGN-E312697 [cTOA-8-E3]">
      <seq>tattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111792" stop="110577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111492" g_stop="110877" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E312697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111492" e_stop="110877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTA</genome_strand>
        <mrna_strand>TATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298154" ref_strand="+" ref_description="SGN-E298154 [cLEW-9-G6]">
      <seq>tctattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggattgtttttgttttttcaagttccattttcatcatctcaggtagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctctctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgaggtacttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111794" stop="110651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111494" g_stop="110951" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E298154" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111494" e_stop="110951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATA</genome_strand>
        <mrna_strand>TCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGATTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGGTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTCTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334783" ref_strand="+" ref_description="SGN-E334783 [cTOE-3-B10]">
      <seq>aagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggttcgttttcggtttttcaagttccattttcatcatctcagttagttcctgcacaaagtggaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111711" stop="110716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111411" g_stop="111016" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E334783" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111411" e_stop="111016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTC</genome_strand>
        <mrna_strand>AAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTCGTTTTCGGTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCACAAAGTGGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322556" ref_strand="+" ref_description="SGN-E322556 [cTOB-26-B10]">
      <seq>ttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacnaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcttttttcactgttgttactaagctttctagtttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111780" stop="110733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111480" g_stop="111033" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E322556" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111480" e_stop="111033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATG-AAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAA</genome_strand>
        <mrna_strand>TTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACNAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCTTTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541745" ref_strand="+" ref_description="SGN-E541745 [TUS-62-L3]">
      <seq>ctcactctattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctggagaaagtagaatcctttttcagattcaacagtttcttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="-" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="111799" stop="110958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111499" g_stop="111258" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="-" ref_id="SGN-E541745" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111499" e_stop="111258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAAT</genome_strand>
        <mrna_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGGAGAAAGTAGAATCCTTTTTCAGATTCAACAGTTTCTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736366" ref_strand="+" ref_description="SGN-E736366 [LC05CA09]">
      <seq>cgaataaactttaccctgcttgttgttgagtgccgtttgtctctttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117694" stop="122856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117992" g_stop="118070" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118071" i_stop="118242" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118243" g_stop="118288" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="125" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118289" i_stop="119393" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119394" g_stop="119501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="233" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119502" i_stop="120161" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120162" g_stop="120443" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="515" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120444" i_stop="121399" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121400" g_stop="121600" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="716" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121601" i_stop="122105" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122106" g_stop="122186" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="797" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122187" i_stop="122510" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122511" g_stop="122556" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="843" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E736366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117992" e_stop="118070"/>
          <exon e_start="118243" e_stop="118288"/>
          <exon e_start="119394" e_stop="119501"/>
          <exon e_start="120162" e_stop="120443"/>
          <exon e_start="121400" e_stop="121600"/>
          <exon e_start="122106" e_stop="122186"/>
          <exon e_start="122511" e_stop="122556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATG</genome_strand>
        <mrna_strand>CGAATAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740006" ref_strand="+" ref_description="SGN-E740006 [LC19CG10]">
      <seq>aacaaactttaccctgcttgttgttgagtgccgtttgtctctttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatggtcaagaggagccaaattctagtcaggaatggcttgtccgttggactatatcacagatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117694" stop="122919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117994" g_stop="118070" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118071" i_stop="118242" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118243" g_stop="118288" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="123" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118289" i_stop="119393" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119394" g_stop="119501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="231" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119502" i_stop="120161" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120162" g_stop="120443" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="513" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120444" i_stop="121399" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121400" g_stop="121600" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="714" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121601" i_stop="122105" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122106" g_stop="122186" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="795" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122187" i_stop="122510" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122511" g_stop="122619" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="904" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E740006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117994" e_stop="118070"/>
          <exon e_start="118243" e_stop="118288"/>
          <exon e_start="119394" e_stop="119501"/>
          <exon e_start="120162" e_stop="120443"/>
          <exon e_start="121400" e_stop="121600"/>
          <exon e_start="122106" e_stop="122186"/>
          <exon e_start="122511" e_stop="122619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</genome_strand>
        <mrna_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329041" ref_strand="+" ref_description="SGN-E329041 [cTOC-24-I22]">
      <seq>tttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacanggacttgaaaaacaggatgccaaacaattggattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117735" stop="122427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118035" g_stop="118070" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118071" i_stop="118242" i_length="172">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118243" g_stop="118288" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="82" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118289" i_stop="119393" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119394" g_stop="119501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="190" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119502" i_stop="120161" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120162" g_stop="120443" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="472" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120444" i_stop="121399" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121400" g_stop="121600" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="673" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121601" i_stop="122105" i_length="505">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122106" g_stop="122127" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="695" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E329041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118035" e_stop="118070"/>
          <exon e_start="118243" e_stop="118288"/>
          <exon e_start="119394" e_stop="119501"/>
          <exon e_start="120162" e_stop="120443"/>
          <exon e_start="121400" e_stop="121600"/>
          <exon e_start="122106" e_stop="122127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATC</genome_strand>
        <mrna_strand>TTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACANGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717587" ref_strand="+" ref_description="SGN-E717587 [FC02AF10]">
      <seq>tcggccgaattgcttgaagatgagcaaacaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgaaaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117747" stop="122860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118056" g_stop="118070" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="34" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118071" i_stop="118242" i_length="172">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118243" g_stop="118288" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="80" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118289" i_stop="119393" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119394" g_stop="119501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="188" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119502" i_stop="120161" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120162" g_stop="120443" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="470" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120444" i_stop="121399" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121400" g_stop="121600" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="671" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121601" i_stop="122105" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122106" g_stop="122186" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="752" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122187" i_stop="122510" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122511" g_stop="122560" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="802" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E717587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118056" e_stop="118070"/>
          <exon e_start="118243" e_stop="118288"/>
          <exon e_start="119394" e_stop="119501"/>
          <exon e_start="120162" e_stop="120443"/>
          <exon e_start="121400" e_stop="121600"/>
          <exon e_start="122106" e_stop="122186"/>
          <exon e_start="122511" e_stop="122560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCA</genome_strand>
        <mrna_strand>ATGAGCAAACAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAAAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371983" ref_strand="+" ref_description="SGN-E371983 [TUS-30-G20]">
      <seq>tccgggaaaaaaaacatcaaaatgctgaagcagacattgctatgtcaaagcacagtgtaaggaaagtacattctaaaaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaatgaggatttttgtactaaccatgataataatgaaggaagtgagagcaacaaggttaacagaagagtttctttacctgcaaagcatgatgtcgatgcaagtacacccacaacaagaaaggtgcccagctacatggctccaaccaagtctgctaaagctaagctgaaagagcaagcctcaccaaggtttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="122345" stop="123627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122645" g_stop="123327" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E371983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122645" e_stop="123327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGG-AAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGC</genome_strand>
        <mrna_strand>TCCGGGAAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAAGAGCAAGCCTCACCAAGGTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283132" ref_strand="+" ref_description="SGN-E283132 [cLER-17-O7]">
      <seq>tccgggaaaaaaaacatcaaaatgctgaagcagacattgctatgtcaaagcacagtgtaaggaaagtacattctaaaaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="122345" stop="123436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122645" g_stop="123136" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E283132" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122645" e_stop="123136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGG-AAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAA</genome_strand>
        <mrna_strand>TCCGGGAAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371982" ref_strand="+" ref_description="SGN-E371982 [TUS-30-G20](-)">
      <seq>aaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaatgaggatttttgtactaaccatgataataatgaaggaagtgagagcaacaaggttaacagaagagtttctttacctgcaaagcatgatgtcgatgcaagtacacccacaacaagaaaggtgcccagctacatggctccaaccaagtctgctaaagctaagctgaaggagcaagcctcaccaaggtttgggcaagatgtggctgagaagaatgccgtaaccagacgtcattctttaccgtcccctatgaatggaaagcttagttcatcaccatcaccacgggtgcagaggctggtccaagctagtgctaaagaaggaatcaagatcgacagatctttatcgtcttcaagggatggtactgataagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0060G21-0deqf/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0060G21.1" temp_strand="+" temp_description="C05HBa0060G21.1  AC212301.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0060G21 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="122420" stop="123803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122720" g_stop="123495" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0060G21.1" gen_strand="+" ref_id="SGN-E371982" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0060G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122720" e_stop="123495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</genome_strand>
        <mrna_strand>AAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTTAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>171</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6766" PGL_stop="13785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6766" e_stop="6831"/>
            <exon e_start="6910" e_stop="7021"/>
            <exon e_start="7202" e_stop="7419"/>
            <exon e_start="11904" e_stop="12347"/>
            <exon e_start="12517" e_stop="13785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6766" e_stop="6831" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6832" i_stop="6909" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6910" e_stop="7021" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7022" i_stop="7201" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7202" e_stop="7419" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.965">
            <gDNA_intron_boundary i_start="7420" i_stop="11903" i_length="4484"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11904" e_stop="12347" e_length="444"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12348" i_stop="12516" i_length="169"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12517" e_stop="13785" e_length="1269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6766" stop="6831"/>
              <exon start="6910" stop="7021"/>
              <exon start="7202" stop="7419"/>
              <exon start="11904" stop="12347"/>
              <exon start="12517" stop="12532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12334" stop="12347"/>
              <exon start="12517" stop="13308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12335" stop="12347"/>
              <exon start="12517" stop="13015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12975" stop="13783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12975" stop="13781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12999" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13229" stop="13785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAAACCTCTACAAAAATTAAATTGAGATTAAAATTCACACAAAAATAAATTTTTTAAAAAATG : GACACAGAGAACCAAAGCCAATTAAGCACTTGGCCTGGTTATGTTGATTGGAAAAATAAGCCTGCACTTACTAATAAACATGGTGGCTTAATTCCTGCCTCCTTTGTCTTAG : TTGTGGAGGTGTTGGAAAATTTGGCATATTTGGCTAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCATCAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTTGTCACTACTTATTACATCTATCTCATCAGTGCACTCATTGAATTTCTG : GGGCTAGTGGTGCTCACCATACAGGCTCGTTCGGGGTCGTTGAAGCCACCAACGTGCGACCTTCAAGCAACTCCGAACGTGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCGCTGCCACCCCACGGTGCTGAACAGTTTGATGAATCAACACCACAAGGAAGAAAACAAAGATCAAGTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTCATTGCTGTCACATTCGTCGTTTGGGTGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATATCAACGTTAGCTATATTCTTATCGATCCCAATCTTCCTTGCTGGTTCGTCGTTCTATAGGAACAAGATACCTAGTGGAAGCCCTCTCACAACAATCAGCAAG : GTTCTTATTGCTGCCTTGGTGAATTCGGGTGCATCAAGAAACTCAACTAGTGCTATAGTAAGTATGACTTCAAGCCCTTCTCCTCCAATTCCAACGGGCAAGGAAAATGGCGAAGATTCAAATAGAAAAGACGTTGGATCAATGCACACTCCATCGACAAGTCTTAGCTTTCTTAATCGAGCTGTTTCAGATACACCAGCTTGTAGTAGTAGTGCATTTGAATGCACAGTGCAACAAGTGGAAGAAGTTAAGATTGTGATGAAAATCCTCCCGATTTTCGCTTGCACCATCATGCTCAACTGTTGTCTAGCTCAACTCTCAACATTCTCAGTCCAACAAGCAGCCTCGATGAACACAAAGGTCGGTTCTTTAAAAGTCCCTCCGGCTTCCCTCCCTGTTTTCCCCGTAGTATTCATCATGATCTTAGCTCCAGTTTACGATCACTTCATCATCCCATTTGCTCGTAGAGTAACCAAAACAGAAATGGGAATCTCACACCTCCAACGTATTGGTATCGGGCTGTTCCTATCCATCGTGGCAATGGCAATCGCAGCCCTAGTTGAAATCAAACGTAAGAGAGTAGCTACTGATTCAGGACTCATCGACTCTGCTCAACCATTGCCTATAACATTCTTTTGGATCGCGTTTCAGTACTTATTTCTCGGGTCAGCTGATCTTTTCGTTCTAGCAGGACTACTAGAATTCTGTTTCTCAGAAGCACCAGTGAGTATGAGATCATTGGCAACATCTCTCTCGTGGGCTTCTTTAGCCATCGGATACTACCTCAGCTCGGCGATTGTGTCTATTGTCAACCGTGTAACAGGCATTTCAACGAACAAGCCATGGCTCGCGGGTAGCAGCTTGAATCACTATCATTTGGACAGGTTCTACTGGCTAATGTGCATACTCAGTGCATTAAACTTTATGCACTACTTATTCTGGGCTACAAAATACAAGTATACATCACTCAAATCTAGCAAGTAACACATGTGAACAGAGTTGTGCTGAAGAAATTTTGGAATGTTAAAACAGACGAAATATATGCATAGAGGGACGGCCCGCGACTTATCGGACCCCCTCTTGTGTGACTCGAAGCAAGGGATTTCAACAAGGGAATTCGAAAAAAAATACAAGAATGTCATACCAATGAGTGATCAAACGATGTTAAGCAATTTTATCGAGCCATCCTTTGTCGGTACACTTATATGTAAAGAATGTTGAACAATATATAATATTTAACAAATTTTGTTTTACTATTTATACGGTATA</gDNA_template>
            <first_frame> I  *  T  S  T  K  I  K  L  R  L  K  F  T  Q  K  *  I  F  *  K  M  :  D  T  E  N  Q  S  Q  L  S  T  W  P  G  Y  V  D  W  K  N  K  P  A  L  T  N  K  H  G  G  L  I  P  A  S  F  V  L   : V  V  E  V  L  E  N  L  A  Y  L  A  N  A  S  N  L  V  L  Y  M  S  E  Y  M  H  F  S  P  S  K  S  A  N  S  V  T  N  F  M  G  T  A  F  L  L  A  L  L  G  G  F  L  S  D  A  F  V  T  T  Y  Y  I  Y  L  I  S  A  L  I  E  F  L  :  G  L  V  V  L  T  I  Q  A  R  S  G  S  L  K  P  P  T  C  D  L  Q  A  T  P  N  V  P  C  E  Q  V  H  G  A  Q  A  A  M  L  F  I  G  L  Y  L  V  A  L  G  V  G  G  I  K  G  S  L  P  P  H  G  A  E  Q  F  D  E  S  T  P  Q  G  R  K  Q  R  S  S  F  F  N  Y  F  V  F  C  L  S  F  G  A  L  I  A  V  T  F  V  V  W  V  E  D  N  K  G  W  Q  W  G  F  G  I  S  T  L  A  I  F  L  S  I  P  I  F  L  A  G  S  S  F  Y  R  N  K  I  P  S  G  S  P  L  T  T  I  S  K  :  V  L  I  A  A  L  V  N  S  G  A  S  R  N  S  T  S  A  I  V  S  M  T  S  S  P  S  P  P  I  P  T  G  K  E  N  G  E  D  S  N  R  K  D  V  G  S  M  H  T  P  S  T  S  L  S  F  L  N  R  A  V  S  D  T  P  A  C  S  S  S  A  F  E  C  T  V  Q  Q  V  E  E  V  K  I  V  M  K  I  L  P  I  F  A  C  T  I  M  L  N  C  C  L  A  Q  L  S  T  F  S  V  Q  Q  A  A  S  M  N  T  K  V  G  S  L  K  V  P  P  A  S  L  P  V  F  P  V  V  F  I  M  I  L  A  P  V  Y  D  H  F  I  I  P  F  A  R  R  V  T  K  T  E  M  G  I  S  H  L  Q  R  I  G  I  G  L  F  L  S  I  V  A  M  A  I  A  A  L  V  E  I  K  R  K  R  V  A  T  D  S  G  L  I  D  S  A  Q  P  L  P  I  T  F  F  W  I  A  F  Q  Y  L  F  L  G  S  A  D  L  F  V  L  A  G  L  L  E  F  C  F  S  E  A  P  V  S  M  R  S  L  A  T  S  L  S  W  A  S  L  A  I  G  Y  Y  L  S  S  A  I  V  S  I  V  N  R  V  T  G  I  S  T  N  K  P  W  L  A  G  S  S  L  N  H  Y  H  L  D  R  F  Y  W  L  M  C  I  L  S  A  L  N  F  M  H  Y  L  F  W  A  T  K  Y  K  Y  T  S  L  K  S  S  K  *  H  M  *  T  E  L  C  *  R  N  F  G  M  L  K  Q  T  K  Y  M  H  R  G  T  A  R  D  L  S  D  P  L  L  C  D  S  K  Q  G  I  S  T  R  E  F  E  K  K  Y  K  N  V  I  P  M  S  D  Q  T  M  L  S  N  F  I  E  P  S  F  V  G  T  L  I  C  K  E  C  *  T  I  Y  N  I  *  Q  I  L  F  Y  Y  L  Y  G  I </first_frame>
            <second_frame>  F  K  P  L  Q  K  L  N  *  D  *  N  S  H  K  N  K  F  F  K  K  W :   T  Q  R  T  K  A  N  *  A  L  G  L  V  M  L  I  G  K  I  S  L  H  L  L  I  N  M  V  A  *  F  L  P  P  L  S  *  :  L  W  R  C  W  K  I  W  H  I  W  L  M  Q  V  I  W  C  C  I  C  L  S  T  C  I  F  H  H  Q  N  Q  Q  I  L  *  L  I  L  W  A  Q  H  F  Y  W  H  F  L  V  D  S  Y  L  M  P  L  S  L  L  I  T  S  I  S  S  V  H  S  L  N  F  W :   G  *  W  C  S  P  Y  R  L  V  R  G  R  *  S  H  Q  R  A  T  F  K  Q  L  R  T  C  L  V  N  K  F  M  V  H  K  L  Q  C  C  S  *  D  S  T  *  W  R  *  A  L  E  V  *  R  D  R  C  H  P  T  V  L  N  S  L  M  N  Q  H  H  K  E  E  N  K  D  Q  V  S  S  I  T  L  C  S  V  S  P  L  E  L  S  L  L  S  H  S  S  F  G  W  K  T  I  R  V  G  N  G  D  S  E  Y  Q  R  *  L  Y  S  Y  R  S  Q  S  S  L  L  V  R  R  S  I  G  T  R  Y  L  V  E  A  L  S  Q  Q  S  A  R :   F  L  L  L  P  W  *  I  R  V  H  Q  E  T  Q  L  V  L  *  *  V  *  L  Q  A  L  L  L  Q  F  Q  R  A  R  K  M  A  K  I  Q  I  E  K  T  L  D  Q  C  T  L  H  R  Q  V  L  A  F  L  I  E  L  F  Q  I  H  Q  L  V  V  V  V  H  L  N  A  Q  C  N  K  W  K  K  L  R  L  *  *  K  S  S  R  F  S  L  A  P  S  C  S  T  V  V  *  L  N  S  Q  H  S  Q  S  N  K  Q  P  R  *  T  Q  R  S  V  L  *  K  S  L  R  L  P  S  L  F  S  P  *  Y  S  S  *  S  *  L  Q  F  T  I  T  S  S  S  H  L  L  V  E  *  P  K  Q  K  W  E  S  H  T  S  N  V  L  V  S  G  C  S  Y  P  S  W  Q  W  Q  S  Q  P  *  L  K  S  N  V  R  E  *  L  L  I  Q  D  S  S  T  L  L  N  H  C  L  *  H  S  F  G  S  R  F  S  T  Y  F  S  G  Q  L  I  F  S  F  *  Q  D  Y  *  N  S  V  S  Q  K  H  Q  *  V  *  D  H  W  Q  H  L  S  R  G  L  L  *  P  S  D  T  T  S  A  R  R  L  C  L  L  S  T  V  *  Q  A  F  Q  R  T  S  H  G  S  R  V  A  A  *  I  T  I  I  W  T  G  S  T  G  *  C  A  Y  S  V  H  *  T  L  C  T  T  Y  S  G  L  Q  N  T  S  I  H  H  S  N  L  A  S  N  T  C  E  Q  S  C  A  E  E  I  L  E  C  *  N  R  R  N  I  C  I  E  G  R  P  A  T  Y  R  T  P  S  C  V  T  R  S  K  G  F  Q  Q  G  N  S  K  K  N  T  R  M  S  Y  Q  *  V  I  K  R  C  *  A  I  L  S  S  H  P  L  S  V  H  L  Y  V  K  N  V  E  Q  Y  I  I  F  N  K  F  C  F  T  I  Y  T  V   </second_frame>
            <third_frame>   L  N  L  Y  K  N  *  I  E  I  K  I  H  T  K  I  N  F  L  K  N   : G  H  R  E  P  K  P  I  K  H  L  A  W  L  C  *  L  E  K  *  A  C  T  Y  *  *  T  W  W  L  N  S  C  L  L  C  L  S :   C  G  G  V  G  K  F  G  I  F  G  *  C  K  *  F  G  V  V  Y  V  *  V  H  A  F  F  T  I  K  I  S  K  F  C  D  *  F  Y  G  H  S  I  F  I  G  T  S  W  W  I  L  I  *  C  L  C  H  Y  L  L  H  L  S  H  Q  C  T  H  *  I  S   : G  A  S  G  A  H  H  T  G  S  F  G  V  V  E  A  T  N  V  R  P  S  S  N  S  E  R  A  L  *  T  S  S  W  C  T  S  C  N  V  V  H  R  T  L  P  S  G  V  R  R  W  R  Y  K  G  I  A  A  T  P  R  C  *  T  V  *  *  I  N  T  T  R  K  K  T  K  I  K  F  L  Q  L  L  C  V  L  S  L  L  W  S  S  H  C  C  H  I  R  R  L  G  G  R  Q  *  G  L  A  M  G  I  R  N  I  N  V  S  Y  I  L  I  D  P  N  L  P  C  W  F  V  V  L  *  E  Q  D  T  *  W  K  P  S  H  N  N  Q  Q   : G  S  Y  C  C  L  G  E  F  G  C  I  K  K  L  N  *  C  Y  S  K  Y  D  F  K  P  F  S  S  N  S  N  G  Q  G  K  W  R  R  F  K  *  K  R  R  W  I  N  A  H  S  I  D  K  S  *  L  S  *  S  S  C  F  R  Y  T  S  L  *  *  *  C  I  *  M  H  S  A  T  S  G  R  S  *  D  C  D  E  N  P  P  D  F  R  L  H  H  H  A  Q  L  L  S  S  S  T  L  N  I  L  S  P  T  S  S  L  D  E  H  K  G  R  F  F  K  S  P  S  G  F  P  P  C  F  P  R  S  I  H  H  D  L  S  S  S  L  R  S  L  H  H  P  I  C  S  *  S  N  Q  N  R  N  G  N  L  T  P  P  T  Y  W  Y  R  A  V  P  I  H  R  G  N  G  N  R  S  P  S  *  N  Q  T  *  E  S  S  Y  *  F  R  T  H  R  L  C  S  T  I  A  Y  N  I  L  L  D  R  V  S  V  L  I  S  R  V  S  *  S  F  R  S  S  R  T  T  R  I  L  F  L  R  S  T  S  E  Y  E  I  I  G  N  I  S  L  V  G  F  F  S  H  R  I  L  P  Q  L  G  D  C  V  Y  C  Q  P  C  N  R  H  F  N  E  Q  A  M  A  R  G  *  Q  L  E  S  L  S  F  G  Q  V  L  L  A  N  V  H  T  Q  C  I  K  L  Y  A  L  L  I  L  G  Y  K  I  Q  V  Y  I  T  Q  I  *  Q  V  T  H  V  N  R  V  V  L  K  K  F  W  N  V  K  T  D  E  I  Y  A  *  R  D  G  P  R  L  I  G  P  P  L  V  *  L  E  A  R  D  F  N  K  G  I  R  K  K  I  Q  E  C  H  T  N  E  *  S  N  D  V  K  Q  F  Y  R  A  I  L  C  R  Y  T  Y  M  *  R  M  L  N  N  I  *  Y  L  T  N  F  V  L  L  F  I  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6826" stop="6831"/>
                    <exon start="6910" stop="7021"/>
                    <exon start="7202" stop="7419"/>
                    <exon start="11904" stop="12347"/>
                    <exon start="12517" stop="13500"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1761</number_coding_nucleotides>
                  <number_encoded_amino_acids>587</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMDTENQSQLSTWPGYVDWKNKPALTNKHGGLIPASFVLVVEVLENLAYLANASNLVLYMSEYMHFSPSKSANSVTNFMGTAFLLALLGGFLSDAFVTTYYIYLISALIEFLGLVVLTIQARSGSLKPPTCDLQATPNVPCEQVHGAQAAMLFIGLYLVALGVGGIKGSLPPHGAEQFDESTPQGRKQRSSFFNYFVFCLSFGALIAVTFVVWVEDNKGWQWGFGISTLAIFLSIPIFLAGSSFYRNKIPSGSPLTTISKVLIAALVNSGASRNSTSAIVSMTSSPSPPIPTGKENGEDSNRKDVGSMHTPSTSLSFLNRAVSDTPACSSSAFECTVQQVEEVKIVMKILPIFACTIMLNCCLAQLSTFSVQQAASMNTKVGSLKVPPASLPVFPVVFIMILAPVYDHFIIPFARRVTKTEMGISHLQRIGIGLFLSIVAMAIAALVEIKRKRVATDSGLIDSAQPLPITFFWIAFQYLFLGSADLFVLAGLLEFCFSEAPVSMRSLATSLSWASLAIGYYLSSAIVSIVNRVTGISTNKPWLAGSSLNHYHLDRFYWLMCILSALNFMHYLFWATKYKYTSLKSSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13525" stop="13737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNFGMLKQTKYMHRGTARDLSDPLLCDSKQGISTREFEKKYKNVIPMSDQTMLSNFIEPSFVGTLICKEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17498" PGL_stop="22266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17498" e_stop="17529"/>
            <exon e_start="17616" e_stop="17718"/>
            <exon e_start="18089" e_stop="18306"/>
            <exon e_start="21653" e_stop="22084"/>
            <exon e_start="22172" e_stop="22266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.730" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17498" e_stop="17529" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17530" i_stop="17615" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17616" e_stop="17718" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17719" i_stop="18088" i_length="370"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18089" e_stop="18306" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.941">
            <gDNA_intron_boundary i_start="18307" i_stop="21652" i_length="3346"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21653" e_stop="22084" e_length="432"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.730">
            <gDNA_intron_boundary i_start="22085" i_stop="22171" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22172" e_stop="22266" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17498" stop="17529"/>
              <exon start="17616" stop="17718"/>
              <exon start="18089" stop="18306"/>
              <exon start="21653" stop="22084"/>
              <exon start="22172" stop="22266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTACAACACTTTCTTTCAACTTAACTAATG : GAAATAGATAATCAAAACAATTGGGATAGCTATGTTGATTGGAAAAATAGACCAGCCATTAACAATCGTCATGGTGGCTTGCTTGCTGCCTCCTTTGTGTTAG : GTGTTGAGGTGTTGGAGAATTTGGCATTTTTGGCAAATGCAAGTAATTTGGTGTTGTATATGTCTGAGTACATGCATTTTTCACCAACAAAATCAGCAAATTCTGTGACTAATTTTATGGGCACAGCATTTTTATTGGCACTTCTTGGTGGATTCTTATCTGATGCCTTCTTCACAACTTATTACATTTATCTCATCAGTGCACTCTTTGAATTTCTG : GGACTTGTAATACTCACCATACAAGCTCGTTCGAGTTCATTGAAGCCACCAAAATGTGATCTAAACAAGCCTTGTGAACAAGTTCATGGTGCACAAGCTGCAATGTTGTTCATAGGACTCTACCTAGTGGCGTTAGGCGTTGGAGGTATAAAGGGATCACTAGCACCCCACGGTGCTGAACAGTTCGATGAATCAACCCCTCGTGAAAGAAAGCATAGATCAACTTTCTTCAATTACTTTGTGTTCTGTCTCTCCTTTGGAGCTCTGATTGCAGTCACATTCGTTGTTTGGATGGAAGACAATAAGGGTTGGCAATGGGGATTCGGAATCTCAACTTCAGCTATATTTCTCTCAATCCCGATATTCCTTTCTGGTTCATCATTCTATCGGAACAAGATACCTCGTGGTAGCCCTCTTACAACGATCAGTAAG : GTTATAATTGCAGCTGTATTAAATTCTAGTTCAAATTCATCGAAAAACTCAAGCACAGTCATTGCAAGTATGACTTCAAGTCCTCCTCCTCCGGT</gDNA_template>
            <first_frame> L  Y  N  T  F  F  Q  L  N  *  W :   K  *  I  I  K  T  I  G  I  A  M  L  I  G  K  I  D  Q  P  L  T  I  V  M  V  A  C  L  L  P  P  L  C  *  :  V  L  R  C  W  R  I  W  H  F  W  Q  M  Q  V  I  W  C  C  I  C  L  S  T  C  I  F  H  Q  Q  N  Q  Q  I  L  *  L  I  L  W  A  Q  H  F  Y  W  H  F  L  V  D  S  Y  L  M  P  S  S  Q  L  I  T  F  I  S  S  V  H  S  L  N  F  W :   D  L  *  Y  S  P  Y  K  L  V  R  V  H  *  S  H  Q  N  V  I  *  T  S  L  V  N  K  F  M  V  H  K  L  Q  C  C  S  *  D  S  T  *  W  R  *  A  L  E  V  *  R  D  H  *  H  P  T  V  L  N  S  S  M  N  Q  P  L  V  K  E  S  I  D  Q  L  S  S  I  T  L  C  S  V  S  P  L  E  L  *  L  Q  S  H  S  L  F  G  W  K  T  I  R  V  G  N  G  D  S  E  S  Q  L  Q  L  Y  F  S  Q  S  R  Y  S  F  L  V  H  H  S  I  G  T  R  Y  L  V  V  A  L  L  Q  R  S  V  R :   L  *  L  Q  L  Y  *  I  L  V  Q  I  H  R  K  T  Q  A  Q  S  L  Q  V  *  L  Q  V  L  L  L  R  </first_frame>
            <second_frame>  S  T  T  L  S  F  N  L  T  N   : G  N  R  *  S  K  Q  L  G  *  L  C  *  L  E  K  *  T  S  H  *  Q  S  S  W  W  L  A  C  C  L  L  C  V  R :   C  *  G  V  G  E  F  G  I  F  G  K  C  K  *  F  G  V  V  Y  V  *  V  H  A  F  F  T  N  K  I  S  K  F  C  D  *  F  Y  G  H  S  I  F  I  G  T  S  W  W  I  L  I  *  C  L  L  H  N  L  L  H  L  S  H  Q  C  T  L  *  I  S   : G  T  C  N  T  H  H  T  S  S  F  E  F  I  E  A  T  K  M  *  S  K  Q  A  L  *  T  S  S  W  C  T  S  C  N  V  V  H  R  T  L  P  S  G  V  R  R  W  R  Y  K  G  I  T  S  T  P  R  C  *  T  V  R  *  I  N  P  S  *  K  K  A  *  I  N  F  L  Q  L  L  C  V  L  S  L  L  W  S  S  D  C  S  H  I  R  C  L  D  G  R  Q  *  G  L  A  M  G  I  R  N  L  N  F  S  Y  I  S  L  N  P  D  I  P  F  W  F  I  I  L  S  E  Q  D  T  S  W  *  P  S  Y  N  D  Q  *   : G  Y  N  C  S  C  I  K  F  *  F  K  F  I  E  K  L  K  H  S  H  C  K  Y  D  F  K  S  S  S  S  G </second_frame>
            <third_frame>   L  Q  H  F  L  S  T  *  L  M  :  E  I  D  N  Q  N  N  W  D  S  Y  V  D  W  K  N  R  P  A  I  N  N  R  H  G  G  L  L  A  A  S  F  V  L   : G  V  E  V  L  E  N  L  A  F  L  A  N  A  S  N  L  V  L  Y  M  S  E  Y  M  H  F  S  P  T  K  S  A  N  S  V  T  N  F  M  G  T  A  F  L  L  A  L  L  G  G  F  L  S  D  A  F  F  T  T  Y  Y  I  Y  L  I  S  A  L  F  E  F  L  :  G  L  V  I  L  T  I  Q  A  R  S  S  S  L  K  P  P  K  C  D  L  N  K  P  C  E  Q  V  H  G  A  Q  A  A  M  L  F  I  G  L  Y  L  V  A  L  G  V  G  G  I  K  G  S  L  A  P  H  G  A  E  Q  F  D  E  S  T  P  R  E  R  K  H  R  S  T  F  F  N  Y  F  V  F  C  L  S  F  G  A  L  I  A  V  T  F  V  V  W  M  E  D  N  K  G  W  Q  W  G  F  G  I  S  T  S  A  I  F  L  S  I  P  I  F  L  S  G  S  S  F  Y  R  N  K  I  P  R  G  S  P  L  T  T  I  S  K  :  V  I  I  A  A  V  L  N  S  S  S  N  S  S  K  N  S  S  T  V  I  A  S  M  T  S  S  P  P  P  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17524" stop="17529"/>
                    <exon start="17616" stop="17718"/>
                    <exon start="18089" stop="18306"/>
                    <exon start="21653" stop="22084"/>
                    <exon start="22172" stop="22264"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMEIDNQNNWDSYVDWKNRPAINNRHGGLLAASFVLGVEVLENLAFLANASNLVLYMSEYMHFSPTKSANSVTNFMGTAFLLALLGGFLSDAFFTTYYIYLISALFEFLGLVILTIQARSSSLKPPKCDLNKPCEQVHGAQAAMLFIGLYLVALGVGGIKGSLAPHGAEQFDESTPRERKHRSTFFNYFVFCLSFGALIAVTFVVWMEDNKGWQWGFGISTSAIFLSIPIFLSGSSFYRNKIPRGSPLTTISKVIIAAVLNSSSNSSKNSSTVIASMTSSPPPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28120" PGL_stop="27646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28120" e_stop="28057"/>
            <exon e_start="27939" e_stop="27646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.906"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="28120" e_stop="28057" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28056" i_stop="27940" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="27939" e_stop="27646" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28120" stop="28057"/>
              <exon start="27939" stop="27646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279973" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTCATCTTCGATCGCACTGATTTCGGTTCTTCTAACCTCTCCCTCCCTCACGACAAATGCAG : GTATAACGACGAAGCAATCAAGGTAGATTGCACAGCTCACTCTATCCTTTACAATGTAGCCACCAACACGTACCGTCCGCTCACCGTTCAAACGGACGTTTGGTGTTCCTCGGGTGCCGTTAACCCTAACGGCACCCTTATACAAACGGGCGGATACCACGCCGGTGAACGTAAAATACGGTTATTTTCACCGTGTTTTGATGAAGAAACTTGTGATTGGACGGAACTTCAACAGAATCTCACCGTTAAACGGTGGTATTCAACTGATCATATACTTCCCGACGGACGTATTAT</gDNA_template>
            <first_frame> S  S  S  S  I  A  L  I  S  V  L  L  T  S  P  S  L  T  T  N  A   : G  I  T  T  K  Q  S  R  *  I  A  Q  L  T  L  S  F  T  M  *  P  P  T  R  T  V  R  S  P  F  K  R  T  F  G  V  P  R  V  P  L  T  L  T  A  P  L  Y  K  R  A  D  T  T  P  V  N  V  K  Y  G  Y  F  H  R  V  L  M  K  K  L  V  I  G  R  N  F  N  R  I  S  P  L  N  G  G  I  Q  L  I  I  Y  F  P  T  D  V  L  </first_frame>
            <second_frame>  R  H  L  R  S  H  *  F  R  F  F  *  P  L  P  P  S  R  Q  M  Q  :  V  *  R  R  S  N  Q  G  R  L  H  S  S  L  Y  P  L  Q  C  S  H  Q  H  V  P  S  A  H  R  S  N  G  R  L  V  F  L  G  C  R  *  P  *  R  H  P  Y  T  N  G  R  I  P  R  R  *  T  *  N  T  V  I  F  T  V  F  *  *  R  N  L  *  L  D  G  T  S  T  E  S  H  R  *  T  V  V  F  N  *  S  Y  T  S  R  R  T  Y  Y </second_frame>
            <third_frame>   V  I  F  D  R  T  D  F  G  S  S  N  L  S  L  P  H  D  K  C  R :   Y  N  D  E  A  I  K  V  D  C  T  A  H  S  I  L  Y  N  V  A  T  N  T  Y  R  P  L  T  V  Q  T  D  V  W  C  S  S  G  A  V  N  P  N  G  T  L  I  Q  T  G  G  Y  H  A  G  E  R  K  I  R  L  F  S  P  C  F  D  E  E  T  C  D  W  T  E  L  Q  Q  N  L  T  V  K  R  W  Y  S  T  D  H  I  L  P  D  G  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28118" stop="28057"/>
                    <exon start="27939" stop="27648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFDRTDFGSSNLSLPHDKCRYNDEAIKVDCTAHSILYNVATNTYRPLTVQTDVWCSSGAVNPNGTLIQTGGYHAGERKIRLFSPCFDEETCDWTELQQNLTVKRWYSTDHILPDGRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37316" PGL_stop="31373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37316" e_stop="37264"/>
            <exon e_start="36982" e_stop="36306"/>
            <exon e_start="35613" e_stop="35406"/>
            <exon e_start="35301" e_stop="35237"/>
            <exon e_start="35088" e_stop="35009"/>
            <exon e_start="34814" e_stop="34759"/>
            <exon e_start="34668" e_stop="34605"/>
            <exon e_start="32905" e_stop="32618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.295" acc_prob="0.538" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37316" e_stop="37264" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.959">
            <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36982" e_stop="36306" e_length="677"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35613" e_stop="35406" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35301" e_stop="35237" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.295" acc_prob="0.538">
            <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35088" e_stop="35009" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34814" e_stop="34759" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.787" acc_prob="0.426">
            <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34668" e_stop="34605" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="32905" e_stop="32618" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37316" stop="37264"/>
              <exon start="36982" stop="36635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37301" stop="37264"/>
              <exon start="36982" stop="36650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37300" stop="37264"/>
              <exon start="36982" stop="36562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37285" stop="37264"/>
              <exon start="36982" stop="36717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37284" stop="37264"/>
              <exon start="36982" stop="36673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36450" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36396" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCAATTCTTATTGTTCATTCAATACCTTACAACTTAGATATTTTTCTCCAT : CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG : AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT : AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG : GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG : ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG : AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG : GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</gDNA_template>
            <first_frame> P  Q  F  L  L  F  I  Q  Y  L  T  T  *  I  F  F  S  I :   *  S  S  Q  L  Y  *  L  T  H  G  I  E  I  G  V  N  L  C  *  *  S  *  S  L  *  A  K  T  S  *  I  S  M  E  S  Q  L  G  L  I  E  K  S  F  N  V  K  Y  S  D  G  V  R  E  A  L  D  E  L  P  D  S  F  T  I  T  D  P  S  I  S  G  H  P  I  V  Y  V  S  R  G  F  L  K  V  F  G  Y  S  K  N  E  V  L  G  K  N  G  R  V  F  Q  G  P  K  T  N  R  R  S  V  M  A  I  R  E  A  I  R  E  E  R  G  I  Q  I  S  L  L  N  Y  R  K  D  G  T  P  F  W  M  L  F  N  M  C  P  V  Y  S  E  K  D  G  R  V  V  H  F  L  G  I  Q  V  P  I  L  R  R  R  N  S  L  G  G  G  I  G  R  N  G  G  V  C  Y  D  G  G  N  C  R  G  Y  V  Y  K  C  C  R  R  E  V  C  S  N  S  M  M  E  M  D  R  A  L  S  V  D  S  V  S  G  L  D  H  T   : E  V  D  V  E  G  P  C  E  A  S  D  Q  E  K  T  K  A  S  V  A  V  N  N  I  M  S  V  L  A  N  Y  S  E  L  N  G  R  L  V  I  D  R  R  C  C  Q  S  G  T  S  L  L  S  A  S  L  N  I  S  F  G  R  I  K  Q  S  F  V  L :   T  D  A  H  L  P  D  M  P  I  V  Y  A  S  D  A  F  L  K  L  I   : G  Y  L  R  H  E  V  L  G  R  N  C  R  F  L  S  G  E  D  T  E  R  G  T  Q  F  Q  :  I  K  Q  C  I  Q  N  E  Q  P  C  T  V  H  I  L  N  Y  R :   K  D  G  T  S  F  W  N  F  L  H  I  S  P  I  R  S  A  S  G  K  :  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L </first_frame>
            <second_frame>  P  N  S  Y  C  S  F  N  T  L  Q  L  R  Y  F  S  P   : S  E  V  P  N  Y  T  S  *  H  M  G  L  R  L  G  L  I  F  V  D  K  V  R  V  F  K  P  K  Q  V  E  S  V  W  N  H  N  W  V  *  L  K  N  H  L  M  L  N  T  Q  M  G  L  E  K  L  L  M  N  C  L  I  V  L  Q  L  L  I  P  L  F  L  V  T  L  L  F  M  Y  Q  G  V  S  *  K  Y  L  V  I  Q  R  M  R  F  *  G  R  M  E  G  Y  F  K  G  L  R  L  I  E  D  Q  L  W  R  F  E  R  R  F  V  R  R  G  V  Y  R  L  V  C  *  I  I  G  R  M  G  H  P  F  G  C  C  L  I  C  V  L  F  I  V  R  R  M  G  G  W  F  I  F  W  E  F  K  C  L  F  *  G  G  E  I  H  *  V  V  E  L  G  E  M  E  E  Y  V  M  M  E  V  I  A  G  G  M  S  I  S  V  V  G  G  R  F  A  R  I  R  *  W  K  W  T  E  R  Y  R  L  I  Q  F  R  G  W  T  I  Q  :  K  *  M  L  K  D  L  V  K  Q  V  I  K  R  R  Q  K  P  V  L  L  S  T  T  *  C  P  C  W  Q  T  T  V  S  *  M  A  D  W  S  L  T  G  D  A  V  N  R  E  R  V  C  S  V  H  P  *  I  Y  L  L  V  E  *  N  K  A  L  Y   : *  L  T  H  T  Y  Q  T  C  Q  L  S  M  Q  V  M  P  S  *  N  *  *  :  A  T  *  D  M  K  Y  W  V  V  I  A  G  F  *  V  G  K  I  Q  R  E  A  H  N  F  R :   *  N  N  A  S  K  M  N  N  R  V  L  Y  I  S  *  I  T   : E  K  M  E  R  H  F  G  I  F  F  T  S  H  R  S  E  V  L  Q  E  R :   S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F   </second_frame>
            <third_frame>   P  I  L  I  V  H  S  I  P  Y  N  L  D  I  F  L  H  :  L  K  F  P  I  I  L  V  D  T  W  D  *  D  W  G  *  S  L  L  I  K  L  E  S  L  S  Q  N  K  L  N  Q  Y  G  I  T  T  G  F  N  *  K  I  I  *  C  *  I  L  R  W  G  *  R  S  S  *  *  I  A  *  *  F  Y  N  Y  *  S  L  Y  F  W  S  P  Y  C  L  C  I  K  G  F  L  E  S  I  W  L  F  K  E  *  G  F  R  E  E  W  K  G  I  S  R  A  *  D  *  *  K  I  S  Y  G  D  S  R  G  D  S  *  G  E  G  Y  T  D  *  F  V  E  L  *  E  G  W  D  T  L  L  D  V  V  *  Y  V  S  C  L  *  *  E  G  W  E  G  G  S  F  F  G  N  S  S  A  Y  F  E  E  E  K  F  T  R  W  W  N  W  E  K  W  R  S  M  L  *  W  R  *  L  Q  G  V  C  L  *  V  L  *  E  G  G  L  L  E  F  D  D  G  N  G  Q  S  V  I  G  *  F  S  F  G  V  G  P  Y  R :   S  R  C  *  R  T  L  *  S  K  *  S  R  E  D  K  S  Q  C  C  C  Q  Q  H  N  V  R  V  G  K  L  Q  *  V  E  W  Q  T  G  H  *  Q  E  M  L  S  I  G  N  E  S  A  Q  C  I  L  K  Y  I  F  W  *  N  K  T  K  L  C  I  :  N  *  R  T  L  T  R  H  A  N  C  L  C  K  *  C  L  P  K  I  N  R :   L  L  E  T  *  S  I  G  S  *  L  P  V  F  K  W  G  R  Y  R  E  R  H  T  I  S   : D  K  T  M  H  P  K  *  T  T  V  Y  C  T  Y  L  K  L  Q  :  K  R  W  N  V  I  L  E  F  S  S  H  L  T  D  P  K  C  F  R  K   : G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36888" stop="36306"/>
                    <exon start="35613" stop="35406"/>
                    <exon start="35301" stop="35237"/>
                    <exon start="35088" stop="35009"/>
                    <exon start="34814" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNEVLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKDGRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGNCRGYVYKCCRREVCSNSMMEMDRALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCCQSGTSLLSASLNISFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFVGIQIEDTTEAREKQGLNPEMRHRSVVAAVKVAVRGWSMGASTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37316" e_stop="37264"/>
            <exon e_start="36982" e_stop="36306"/>
            <exon e_start="35613" e_stop="35009"/>
            <exon e_start="34814" e_stop="34759"/>
            <exon e_start="34668" e_stop="34605"/>
            <exon e_start="32905" e_stop="32602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37316" e_stop="37264" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.959">
            <gDNA_intron_boundary i_start="37263" i_stop="36983" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36982" e_stop="36306" e_length="677"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35613" e_stop="35009" e_length="605"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34814" e_stop="34759" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.787" acc_prob="0.426">
            <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34668" e_stop="34605" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="32905" e_stop="32602" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37316" stop="37264"/>
              <exon start="36982" stop="36635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37301" stop="37264"/>
              <exon start="36982" stop="36650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37300" stop="37264"/>
              <exon start="36982" stop="36562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37285" stop="37264"/>
              <exon start="36982" stop="36717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37284" stop="37264"/>
              <exon start="36982" stop="36673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36449" stop="36306"/>
              <exon start="35613" stop="35141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35284" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCAATTCTTATTGTTCATTCAATACCTTACAACTTAGATATTTTTCTCCAT : CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG : AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTGTGAGTTTTTTTTAATTCCTAATTTTCTTGTTTTGATGACCAATATGATCTGTTATTGGATGGACTTACCACTTTCTCTTGGAATATCTTTCTGTAACGTGCAGAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAGGTGCTAAAGCTGTAGCTAATTTACACTAGACATTCCATGGGATGTTCTCATTGTTTATGGGTTTGGGTCTATTTCTTGTGTTCATAAAAGAGCATGAGGGCTTACTCTAACTAATATTTCTAACAGGAACCATTCTTTTCTTCAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG : ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG : AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG : GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAG</gDNA_template>
            <first_frame> P  Q  F  L  L  F  I  Q  Y  L  T  T  *  I  F  F  S  I :   *  S  S  Q  L  Y  *  L  T  H  G  I  E  I  G  V  N  L  C  *  *  S  *  S  L  *  A  K  T  S  *  I  S  M  E  S  Q  L  G  L  I  E  K  S  F  N  V  K  Y  S  D  G  V  R  E  A  L  D  E  L  P  D  S  F  T  I  T  D  P  S  I  S  G  H  P  I  V  Y  V  S  R  G  F  L  K  V  F  G  Y  S  K  N  E  V  L  G  K  N  G  R  V  F  Q  G  P  K  T  N  R  R  S  V  M  A  I  R  E  A  I  R  E  E  R  G  I  Q  I  S  L  L  N  Y  R  K  D  G  T  P  F  W  M  L  F  N  M  C  P  V  Y  S  E  K  D  G  R  V  V  H  F  L  G  I  Q  V  P  I  L  R  R  R  N  S  L  G  G  G  I  G  R  N  G  G  V  C  Y  D  G  G  N  C  R  G  Y  V  Y  K  C  C  R  R  E  V  C  S  N  S  M  M  E  M  D  R  A  L  S  V  D  S  V  S  G  L  D  H  T   : E  V  D  V  E  G  P  C  E  A  S  D  Q  E  K  T  K  A  S  V  A  V  N  N  I  M  S  V  L  A  N  Y  S  E  L  N  G  R  L  V  I  D  R  R  C  C  Q  S  G  T  S  L  L  S  A  S  L  N  I  S  F  G  R  I  K  Q  S  F  V  L  *  V  F  F  N  S  *  F  S  C  F  D  D  Q  Y  D  L  L  L  D  G  L  T  T  F  S  W  N  I  F  L  *  R  A  E  L  T  H  T  Y  Q  T  C  Q  L  S  M  Q  V  M  P  S  *  N  *  *  V  L  K  L  *  L  I  Y  T  R  H  S  M  G  C  S  H  C  L  W  V  W  V  Y  F  L  C  S  *  K  S  M  R  A  Y  S  N  *  Y  F  *  Q  E  P  F  F  S  S  I  G  Y  L  R  H  E  V  L  G  R  N  C  R  F  L  S  G  E  D  T  E  R  G  T  Q  F  Q  :  I  K  Q  C  I  Q  N  E  Q  P  C  T  V  H  I  L  N  Y  R :   K  D  G  T  S  F  W  N  F  L  H  I  S  P  I  R  S  A  S  G  K  :  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L  I  F  S  L  S  </first_frame>
            <second_frame>  P  N  S  Y  C  S  F  N  T  L  Q  L  R  Y  F  S  P   : S  E  V  P  N  Y  T  S  *  H  M  G  L  R  L  G  L  I  F  V  D  K  V  R  V  F  K  P  K  Q  V  E  S  V  W  N  H  N  W  V  *  L  K  N  H  L  M  L  N  T  Q  M  G  L  E  K  L  L  M  N  C  L  I  V  L  Q  L  L  I  P  L  F  L  V  T  L  L  F  M  Y  Q  G  V  S  *  K  Y  L  V  I  Q  R  M  R  F  *  G  R  M  E  G  Y  F  K  G  L  R  L  I  E  D  Q  L  W  R  F  E  R  R  F  V  R  R  G  V  Y  R  L  V  C  *  I  I  G  R  M  G  H  P  F  G  C  C  L  I  C  V  L  F  I  V  R  R  M  G  G  W  F  I  F  W  E  F  K  C  L  F  *  G  G  E  I  H  *  V  V  E  L  G  E  M  E  E  Y  V  M  M  E  V  I  A  G  G  M  S  I  S  V  V  G  G  R  F  A  R  I  R  *  W  K  W  T  E  R  Y  R  L  I  Q  F  R  G  W  T  I  Q  :  K  *  M  L  K  D  L  V  K  Q  V  I  K  R  R  Q  K  P  V  L  L  S  T  T  *  C  P  C  W  Q  T  T  V  S  *  M  A  D  W  S  L  T  G  D  A  V  N  R  E  R  V  C  S  V  H  P  *  I  Y  L  L  V  E  *  N  K  A  L  Y  C  E  F  F  L  I  P  N  F  L  V  L  M  T  N  M  I  C  Y  W  M  D  L  P  L  S  L  G  I  S  F  C  N  V  Q  N  *  R  T  L  T  R  H  A  N  C  L  C  K  *  C  L  P  K  I  N  R  C  *  S  C  S  *  F  T  L  D  I  P  W  D  V  L  I  V  Y  G  F  G  S  I  S  C  V  H  K  R  A  *  G  L  T  L  T  N  I  S  N  R  N  H  S  F  L  Q  *  A  T  *  D  M  K  Y  W  V  V  I  A  G  F  *  V  G  K  I  Q  R  E  A  H  N  F  R :   *  N  N  A  S  K  M  N  N  R  V  L  Y  I  S  *  I  T   : E  K  M  E  R  H  F  G  I  F  F  T  S  H  R  S  E  V  L  Q  E  R :   S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F  *  S  F  L  C  Q </second_frame>
            <third_frame>   P  I  L  I  V  H  S  I  P  Y  N  L  D  I  F  L  H  :  L  K  F  P  I  I  L  V  D  T  W  D  *  D  W  G  *  S  L  L  I  K  L  E  S  L  S  Q  N  K  L  N  Q  Y  G  I  T  T  G  F  N  *  K  I  I  *  C  *  I  L  R  W  G  *  R  S  S  *  *  I  A  *  *  F  Y  N  Y  *  S  L  Y  F  W  S  P  Y  C  L  C  I  K  G  F  L  E  S  I  W  L  F  K  E  *  G  F  R  E  E  W  K  G  I  S  R  A  *  D  *  *  K  I  S  Y  G  D  S  R  G  D  S  *  G  E  G  Y  T  D  *  F  V  E  L  *  E  G  W  D  T  L  L  D  V  V  *  Y  V  S  C  L  *  *  E  G  W  E  G  G  S  F  F  G  N  S  S  A  Y  F  E  E  E  K  F  T  R  W  W  N  W  E  K  W  R  S  M  L  *  W  R  *  L  Q  G  V  C  L  *  V  L  *  E  G  G  L  L  E  F  D  D  G  N  G  Q  S  V  I  G  *  F  S  F  G  V  G  P  Y  R :   S  R  C  *  R  T  L  *  S  K  *  S  R  E  D  K  S  Q  C  C  C  Q  Q  H  N  V  R  V  G  K  L  Q  *  V  E  W  Q  T  G  H  *  Q  E  M  L  S  I  G  N  E  S  A  Q  C  I  L  K  Y  I  F  W  *  N  K  T  K  L  C  I  V  S  F  F  *  F  L  I  F  L  F  *  *  P  I  *  S  V  I  G  W  T  Y  H  F  L  L  E  Y  L  S  V  T  C  R  T  D  A  H  L  P  D  M  P  I  V  Y  A  S  D  A  F  L  K  L  I  G  A  K  A  V  A  N  L  H  *  T  F  H  G  M  F  S  L  F  M  G  L  G  L  F  L  V  F  I  K  E  H  E  G  L  L  *  L  I  F  L  T  G  T  I  L  F  F  N  R  L  L  E  T  *  S  I  G  S  *  L  P  V  F  K  W  G  R  Y  R  E  R  H  T  I  S   : D  K  T  M  H  P  K  *  T  T  V  Y  C  T  Y  L  K  L  Q  :  K  R  W  N  V  I  L  E  F  S  S  H  L  T  D  P  K  C  F  R  K   : G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  D  L  F  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36888" stop="36306"/>
                    <exon start="35613" stop="35402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNEVLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKDGRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGNCRGYVYKCCRREVCSNSMMEMDRALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCCQSGTSLLSASLNISFGRIKQSFVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35113" stop="35009"/>
                    <exon start="34814" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEPFFSSIGYLRHEVLGRNCRFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFVGIQIEDTTEAREKQGLNPEMRHRSVVAAVKVAVRGWSMGASTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37301" e_stop="36306"/>
            <exon e_start="35613" e_stop="35406"/>
            <exon e_start="35301" e_stop="35237"/>
            <exon e_start="35088" e_stop="35009"/>
            <exon e_start="34814" e_stop="34759"/>
            <exon e_start="34668" e_stop="34605"/>
            <exon e_start="32905" e_stop="32618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.295" acc_prob="0.538" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="37301" e_stop="36306" e_length="996"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35613" e_stop="35406" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35301" e_stop="35237" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.295" acc_prob="0.538">
            <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35088" e_stop="35009" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34814" e_stop="34759" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.787" acc_prob="0.426">
            <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34668" e_stop="34605" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="32905" e_stop="32618" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37301" stop="36833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37160" stop="36744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37025" stop="36651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37001" stop="36414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36450" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36396" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATATGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAAGACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTTTTTTGTTTATTGATGATTTGTTTGTTCTTGTTTTGTGTATGGTTTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG : AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT : AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG : GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG : ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG : AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG : GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</gDNA_template>
            <first_frame> F  I  Q  Y  L  T  T  *  I  F  F  S  M  *  A  L  Q  Y  C  F  Y  R  N  *  *  N  Y  C  Y  I  *  V  F  F  R  N  I  K  *  D  C  V  R  F  V  I  *  R  E  M  N  *  *  V  S  *  K  C  R  Q  D  C  V  R  F  R  V  L  V  Y  G  V  V  F  S  Y  V  W  Y  V  K  F  Y  V  L  F  L  W  L  F  F  C  L  L  M  I  C  L  F  L  F  C  V  W  F  E  A  E  V  P  N  Y  T  S  *  H  M  G  L  R  L  G  L  I  F  V  D  K  V  R  V  F  K  P  K  Q  V  E  S  V  W  N  H  N  W  V  *  L  K  N  H  L  M  L  N  T  Q  M  G  L  E  K  L  L  M  N  C  L  I  V  L  Q  L  L  I  P  L  F  L  V  T  L  L  F  M  Y  Q  G  V  S  *  K  Y  L  V  I  Q  R  M  R  F  *  G  R  M  E  G  Y  F  K  G  L  R  L  I  E  D  Q  L  W  R  F  E  R  R  F  V  R  R  G  V  Y  R  L  V  C  *  I  I  G  R  M  G  H  P  F  G  C  C  L  I  C  V  L  F  I  V  R  R  M  G  G  W  F  I  F  W  E  F  K  C  L  F  *  G  G  E  I  H  *  V  V  E  L  G  E  M  E  E  Y  V  M  M  E  V  I  A  G  G  M  S  I  S  V  V  G  G  R  F  A  R  I  R  *  W  K  W  T  E  R  Y  R  L  I  Q  F  R  G  W  T  I  Q  :  K  *  M  L  K  D  L  V  K  Q  V  I  K  R  R  Q  K  P  V  L  L  S  T  T  *  C  P  C  W  Q  T  T  V  S  *  M  A  D  W  S  L  T  G  D  A  V  N  R  E  R  V  C  S  V  H  P  *  I  Y  L  L  V  E  *  N  K  A  L  Y   : *  L  T  H  T  Y  Q  T  C  Q  L  S  M  Q  V  M  P  S  *  N  *  *  :  A  T  *  D  M  K  Y  W  V  V  I  A  G  F  *  V  G  K  I  Q  R  E  A  H  N  F  R :   *  N  N  A  S  K  M  N  N  R  V  L  Y  I  S  *  I  T   : E  K  M  E  R  H  F  G  I  F  F  T  S  H  R  S  E  V  L  Q  E  R :   S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F   </first_frame>
            <second_frame>  S  F  N  T  L  Q  L  R  Y  F  S  P  C  K  L  F  N  I  V  F  I  V  T  D  K  I  I  V  I  Y  E  S  F  L  E  I  *  N  K  I  V  L  D  L  L  Y  S  V  K  *  I  N  E  F  R  K  N  A  G  K  T  V  L  D  L  E  F  *  Y  M  G  L  S  F  L  M  C  G  M  L  N  S  M  C  Y  F  Y  G  Y  F  F  V  Y  *  *  F  V  C  S  C  F  V  Y  G  L  K  L  K  F  P  I  I  L  V  D  T  W  D  *  D  W  G  *  S  L  L  I  K  L  E  S  L  S  Q  N  K  L  N  Q  Y  G  I  T  T  G  F  N  *  K  I  I  *  C  *  I  L  R  W  G  *  R  S  S  *  *  I  A  *  *  F  Y  N  Y  *  S  L  Y  F  W  S  P  Y  C  L  C  I  K  G  F  L  E  S  I  W  L  F  K  E  *  G  F  R  E  E  W  K  G  I  S  R  A  *  D  *  *  K  I  S  Y  G  D  S  R  G  D  S  *  G  E  G  Y  T  D  *  F  V  E  L  *  E  G  W  D  T  L  L  D  V  V  *  Y  V  S  C  L  *  *  E  G  W  E  G  G  S  F  F  G  N  S  S  A  Y  F  E  E  E  K  F  T  R  W  W  N  W  E  K  W  R  S  M  L  *  W  R  *  L  Q  G  V  C  L  *  V  L  *  E  G  G  L  L  E  F  D  D  G  N  G  Q  S  V  I  G  *  F  S  F  G  V  G  P  Y  R :   S  R  C  *  R  T  L  *  S  K  *  S  R  E  D  K  S  Q  C  C  C  Q  Q  H  N  V  R  V  G  K  L  Q  *  V  E  W  Q  T  G  H  *  Q  E  M  L  S  I  G  N  E  S  A  Q  C  I  L  K  Y  I  F  W  *  N  K  T  K  L  C  I  :  N  *  R  T  L  T  R  H  A  N  C  L  C  K  *  C  L  P  K  I  N  R :   L  L  E  T  *  S  I  G  S  *  L  P  V  F  K  W  G  R  Y  R  E  R  H  T  I  S   : D  K  T  M  H  P  K  *  T  T  V  Y  C  T  Y  L  K  L  Q  :  K  R  W  N  V  I  L  E  F  S  S  H  L  T  D  P  K  C  F  R  K   : G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  </second_frame>
            <third_frame>   H  S  I  P  Y  N  L  D  I  F  L  H  V  S  S  S  I  L  F  L  S  *  L  I  K  L  L  L  Y  M  S  L  F  *  K  Y  K  I  R  L  C  *  I  C  Y  I  A  *  N  E  L  M  S  F  V  K  M  Q  A  R  L  C  *  I  *  S  F  S  I  W  G  C  L  F  L  C  V  V  C  *  I  L  C  A  I  S  M  V  I  F  L  F  I  D  D  L  F  V  L  V  L  C  M  V  *  S  *  S  S  Q  L  Y  *  L  T  H  G  I  E  I  G  V  N  L  C  *  *  S  *  S  L  *  A  K  T  S  *  I  S  M  E  S  Q  L  G  L  I  E  K  S  F  N  V  K  Y  S  D  G  V  R  E  A  L  D  E  L  P  D  S  F  T  I  T  D  P  S  I  S  G  H  P  I  V  Y  V  S  R  G  F  L  K  V  F  G  Y  S  K  N  E  V  L  G  K  N  G  R  V  F  Q  G  P  K  T  N  R  R  S  V  M  A  I  R  E  A  I  R  E  E  R  G  I  Q  I  S  L  L  N  Y  R  K  D  G  T  P  F  W  M  L  F  N  M  C  P  V  Y  S  E  K  D  G  R  V  V  H  F  L  G  I  Q  V  P  I  L  R  R  R  N  S  L  G  G  G  I  G  R  N  G  G  V  C  Y  D  G  G  N  C  R  G  Y  V  Y  K  C  C  R  R  E  V  C  S  N  S  M  M  E  M  D  R  A  L  S  V  D  S  V  S  G  L  D  H  T   : E  V  D  V  E  G  P  C  E  A  S  D  Q  E  K  T  K  A  S  V  A  V  N  N  I  M  S  V  L  A  N  Y  S  E  L  N  G  R  L  V  I  D  R  R  C  C  Q  S  G  T  S  L  L  S  A  S  L  N  I  S  F  G  R  I  K  Q  S  F  V  L :   T  D  A  H  L  P  D  M  P  I  V  Y  A  S  D  A  F  L  K  L  I   : G  Y  L  R  H  E  V  L  G  R  N  C  R  F  L  S  G  E  D  T  E  R  G  T  Q  F  Q  :  I  K  Q  C  I  Q  N  E  Q  P  C  T  V  H  I  L  N  Y  R :   K  D  G  T  S  F  W  N  F  L  H  I  S  P  I  R  S  A  S  G  K  :  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36888" stop="36306"/>
                    <exon start="35613" stop="35406"/>
                    <exon start="35301" stop="35237"/>
                    <exon start="35088" stop="35009"/>
                    <exon start="34814" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNEVLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKDGRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGNCRGYVYKCCRREVCSNSMMEMDRALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCCQSGTSLLSASLNISFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFVGIQIEDTTEAREKQGLNPEMRHRSVVAAVKVAVRGWSMGASTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="37111" e_stop="37069"/>
            <exon e_start="36982" e_stop="36306"/>
            <exon e_start="35613" e_stop="35406"/>
            <exon e_start="35301" e_stop="35237"/>
            <exon e_start="35088" e_stop="35009"/>
            <exon e_start="34814" e_stop="34759"/>
            <exon e_start="34668" e_stop="34605"/>
            <exon e_start="32905" e_stop="32618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.295" acc_prob="0.538" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37111" e_stop="37069" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="37068" i_stop="36983" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36982" e_stop="36306" e_length="677"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="36305" i_stop="35614" i_length="692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35613" e_stop="35406" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35405" i_stop="35302" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35301" e_stop="35237" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.295" acc_prob="0.538">
            <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35088" e_stop="35009" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34814" e_stop="34759" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.787" acc_prob="0.426">
            <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34668" e_stop="34605" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="32905" e_stop="32618" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37111" stop="37069"/>
              <exon start="36982" stop="36480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36629" stop="36395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36450" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36396" stop="36306"/>
              <exon start="35613" stop="35406"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTG : CTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAGATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAATCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGTCACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAAGGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAAGTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTATGTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGACCATACAG : AAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTGGTAGAATAAAACAAAGCTTTGTATT : AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG : GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG : ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG : AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG : GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</gDNA_template>
            <first_frame> D  L  E  F  *  Y  M  G  L  S  F  L  M  C   : A  E  V  P  N  Y  T  S  *  H  M  G  L  R  L  G  L  I  F  V  D  K  V  R  V  F  K  P  K  Q  V  E  S  V  W  N  H  N  W  V  *  L  K  N  H  L  M  L  N  T  Q  M  G  L  E  K  L  L  M  N  C  L  I  V  L  Q  L  L  I  P  L  F  L  V  T  L  L  F  M  Y  Q  G  V  S  *  K  Y  L  V  I  Q  R  M  R  F  *  G  R  M  E  G  Y  F  K  G  L  R  L  I  E  D  Q  L  W  R  F  E  R  R  F  V  R  R  G  V  Y  R  L  V  C  *  I  I  G  R  M  G  H  P  F  G  C  C  L  I  C  V  L  F  I  V  R  R  M  G  G  W  F  I  F  W  E  F  K  C  L  F  *  G  G  E  I  H  *  V  V  E  L  G  E  M  E  E  Y  V  M  M  E  V  I  A  G  G  M  S  I  S  V  V  G  G  R  F  A  R  I  R  *  W  K  W  T  E  R  Y  R  L  I  Q  F  R  G  W  T  I  Q  :  K  *  M  L  K  D  L  V  K  Q  V  I  K  R  R  Q  K  P  V  L  L  S  T  T  *  C  P  C  W  Q  T  T  V  S  *  M  A  D  W  S  L  T  G  D  A  V  N  R  E  R  V  C  S  V  H  P  *  I  Y  L  L  V  E  *  N  K  A  L  Y   : *  L  T  H  T  Y  Q  T  C  Q  L  S  M  Q  V  M  P  S  *  N  *  *  :  A  T  *  D  M  K  Y  W  V  V  I  A  G  F  *  V  G  K  I  Q  R  E  A  H  N  F  R :   *  N  N  A  S  K  M  N  N  R  V  L  Y  I  S  *  I  T   : E  K  M  E  R  H  F  G  I  F  F  T  S  H  R  S  E  V  L  Q  E  R :   S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F   </first_frame>
            <second_frame>  I  *  S  F  S  I  W  G  C  L  F  L  C  V  :  L  K  F  P  I  I  L  V  D  T  W  D  *  D  W  G  *  S  L  L  I  K  L  E  S  L  S  Q  N  K  L  N  Q  Y  G  I  T  T  G  F  N  *  K  I  I  *  C  *  I  L  R  W  G  *  R  S  S  *  *  I  A  *  *  F  Y  N  Y  *  S  L  Y  F  W  S  P  Y  C  L  C  I  K  G  F  L  E  S  I  W  L  F  K  E  *  G  F  R  E  E  W  K  G  I  S  R  A  *  D  *  *  K  I  S  Y  G  D  S  R  G  D  S  *  G  E  G  Y  T  D  *  F  V  E  L  *  E  G  W  D  T  L  L  D  V  V  *  Y  V  S  C  L  *  *  E  G  W  E  G  G  S  F  F  G  N  S  S  A  Y  F  E  E  E  K  F  T  R  W  W  N  W  E  K  W  R  S  M  L  *  W  R  *  L  Q  G  V  C  L  *  V  L  *  E  G  G  L  L  E  F  D  D  G  N  G  Q  S  V  I  G  *  F  S  F  G  V  G  P  Y  R :   S  R  C  *  R  T  L  *  S  K  *  S  R  E  D  K  S  Q  C  C  C  Q  Q  H  N  V  R  V  G  K  L  Q  *  V  E  W  Q  T  G  H  *  Q  E  M  L  S  I  G  N  E  S  A  Q  C  I  L  K  Y  I  F  W  *  N  K  T  K  L  C  I  :  N  *  R  T  L  T  R  H  A  N  C  L  C  K  *  C  L  P  K  I  N  R :   L  L  E  T  *  S  I  G  S  *  L  P  V  F  K  W  G  R  Y  R  E  R  H  T  I  S   : D  K  T  M  H  P  K  *  T  T  V  Y  C  T  Y  L  K  L  Q  :  K  R  W  N  V  I  L  E  F  S  S  H  L  T  D  P  K  C  F  R  K   : G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  </second_frame>
            <third_frame>   F  R  V  L  V  Y  G  V  V  F  S  Y  V  C :   *  S  S  Q  L  Y  *  L  T  H  G  I  E  I  G  V  N  L  C  *  *  S  *  S  L  *  A  K  T  S  *  I  S  M  E  S  Q  L  G  L  I  E  K  S  F  N  V  K  Y  S  D  G  V  R  E  A  L  D  E  L  P  D  S  F  T  I  T  D  P  S  I  S  G  H  P  I  V  Y  V  S  R  G  F  L  K  V  F  G  Y  S  K  N  E  V  L  G  K  N  G  R  V  F  Q  G  P  K  T  N  R  R  S  V  M  A  I  R  E  A  I  R  E  E  R  G  I  Q  I  S  L  L  N  Y  R  K  D  G  T  P  F  W  M  L  F  N  M  C  P  V  Y  S  E  K  D  G  R  V  V  H  F  L  G  I  Q  V  P  I  L  R  R  R  N  S  L  G  G  G  I  G  R  N  G  G  V  C  Y  D  G  G  N  C  R  G  Y  V  Y  K  C  C  R  R  E  V  C  S  N  S  M  M  E  M  D  R  A  L  S  V  D  S  V  S  G  L  D  H  T   : E  V  D  V  E  G  P  C  E  A  S  D  Q  E  K  T  K  A  S  V  A  V  N  N  I  M  S  V  L  A  N  Y  S  E  L  N  G  R  L  V  I  D  R  R  C  C  Q  S  G  T  S  L  L  S  A  S  L  N  I  S  F  G  R  I  K  Q  S  F  V  L :   T  D  A  H  L  P  D  M  P  I  V  Y  A  S  D  A  F  L  K  L  I   : G  Y  L  R  H  E  V  L  G  R  N  C  R  F  L  S  G  E  D  T  E  R  G  T  Q  F  Q  :  I  K  Q  C  I  Q  N  E  Q  P  C  T  V  H  I  L  N  Y  R :   K  D  G  T  S  F  W  N  F  L  H  I  S  P  I  R  S  A  S  G  K  :  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36888" stop="36306"/>
                    <exon start="35613" stop="35406"/>
                    <exon start="35301" stop="35237"/>
                    <exon start="35088" stop="35009"/>
                    <exon start="34814" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNEVLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKDGRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGNCRGYVYKCCRREVCSNSMMEMDRALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCCQSGTSLLSASLNISFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFVGIQIEDTTEAREKQGLNPEMRHRSVVAAVKVAVRGWSMGASTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="35535" e_stop="35431"/>
            <exon e_start="35301" e_stop="35237"/>
            <exon e_start="35088" e_stop="35009"/>
            <exon e_start="34814" e_stop="34759"/>
            <exon e_start="34668" e_stop="34605"/>
            <exon e_start="32905" e_stop="32596"/>
            <exon e_start="32448" e_stop="32420"/>
            <exon e_start="31380" e_stop="31373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.729" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.295" acc_prob="0.538" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.818" e_score="0.996"/>
          <exon-intron don_prob="0.693" acc_prob="0.735" e_score="0.586"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35535" e_stop="35431" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.729" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35430" i_stop="35302" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35301" e_stop="35237" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.295" acc_prob="0.538">
            <gDNA_intron_boundary i_start="35236" i_stop="35089" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35088" e_stop="35009" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="35008" i_stop="34815" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34814" e_stop="34759" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.787" acc_prob="0.426">
            <gDNA_intron_boundary i_start="34758" i_stop="34669" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34668" e_stop="34605" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34604" i_stop="32906" i_length="1699"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="32905" e_stop="32596" e_length="310"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.818">
            <gDNA_intron_boundary i_start="32595" i_stop="32449" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="0.586">
            <gDNA_exon_boundary e_start="32448" e_stop="32420" e_length="29"/>
          </exon>
          <intron i_serial="7" don_prob="0.693" acc_prob="0.735">
            <gDNA_intron_boundary i_start="32419" i_stop="31381" i_length="1039"/>
          </intron>
          <exon e_serial="8" e_score="0.500">
            <gDNA_exon_boundary e_start="31380" e_stop="31373" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35535" stop="35431"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32596"/>
              <exon start="32448" stop="32420"/>
              <exon start="31380" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35446" stop="35431"/>
              <exon start="35301" stop="35237"/>
              <exon start="35088" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32596"/>
              <exon start="32448" stop="32420"/>
              <exon start="31380" stop="31373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="35009"/>
              <exon start="34814" stop="34759"/>
              <exon start="34668" stop="34605"/>
              <exon start="32905" stop="32624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGTTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAATATATCTTTTG : AACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTAAAATTAATAG : GCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG : ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTACAG : AAAAGATGGAACGTCATTTTGGAATTTTCTTCACATCTCACCGATCCGAAGTGCTTCAGGAAAG : GTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTGATCTTTTCTTTGTCAGATATCC : CTAACAAAATCCGAAAATAACTTCTTGAA : GGCAAGCC</gDNA_template>
            <first_frame> P  C  W  Q  T  T  V  S  *  M  A  D  W  S  L  T  G  D  A  V  N  R  E  R  V  C  S  V  H  P  *  I  Y  L  L  :  N  *  R  T  L  T  R  H  A  N  C  L  C  K  *  C  L  P  K  I  N  R :   L  L  E  T  *  S  I  G  S  *  L  P  V  F  K  W  G  R  Y  R  E  R  H  T  I  S   : D  K  T  M  H  P  K  *  T  T  V  Y  C  T  Y  L  K  L  Q  :  K  R  W  N  V  I  L  E  F  S  S  H  L  T  D  P  K  C  F  R  K   : G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  D  L  F  F  V  R  Y  P :   *  Q  N  P  K  I  T  S  *   : R  Q  A </first_frame>
            <second_frame>  R  V  G  K  L  Q  *  V  E  W  Q  T  G  H  *  Q  E  M  L  S  I  G  N  E  S  A  Q  C  I  L  K  Y  I  F  * :   T  D  A  H  L  P  D  M  P  I  V  Y  A  S  D  A  F  L  K  L  I   : G  Y  L  R  H  E  V  L  G  R  N  C  R  F  L  S  G  E  D  T  E  R  G  T  Q  F  Q  :  I  K  Q  C  I  Q  N  E  Q  P  C  T  V  H  I  L  N  Y  R :   K  D  G  T  S  F  W  N  F  L  H  I  S  P  I  R  S  A  S  G  K  :  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L  I  F  S  L  S  D  I   : P  N  K  I  R  K  *  L  L  E  :  G  K   </second_frame>
            <third_frame>   V  L  A  N  Y  S  E  L  N  G  R  L  V  I  D  R  R  C  C  Q  S  G  T  S  L  L  S  A  S  L  N  I  S  F   : E  L  T  H  T  Y  Q  T  C  Q  L  S  M  Q  V  M  P  S  *  N  *  *  :  A  T  *  D  M  K  Y  W  V  V  I  A  G  F  *  V  G  K  I  Q  R  E  A  H  N  F  R :   *  N  N  A  S  K  M  N  N  R  V  L  Y  I  S  *  I  T   : E  K  M  E  R  H  F  G  I  F  F  T  S  H  R  S  E  V  L  Q  E  R :   S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F  *  S  F  L  C  Q  I  S  :  L  T  K  S  E  N  N  F  L  K :   A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35300" stop="35237"/>
                    <exon start="35088" stop="35009"/>
                    <exon start="34814" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32759"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFVGIQIEDTTEAREKQGLNPEMRHRSVVAAVKVAVRGWSMGASTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34791" stop="34759"/>
                    <exon start="34668" stop="34605"/>
                    <exon start="32905" stop="32646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTVYCTYLKLQKRWNVILEFSSHLTDPKCFRKGRVFCWHSDRRYYRGSGETRTESGNEASQCCSCCKGGCERVVNGCKYLLVHEEICVLLFLVLINKLDSAEKNVLLLAHWYQKKKKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="32911" e_stop="32618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="32911" e_stop="32618" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32905" stop="32618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATAGGTCGCGTATTTTGTTGGCATTCAGATAGAAGATACTACCGAGGCTCGGGAGAAACAAGGACTGAATCCGGAAATGAGGCATCGCAGTGTTGTAGCTGCTGTAAAGGTGGCTGTGAGAGGGTGGTCAATGGGTGCAAGTACCTCCTAGTTCATGAAGAAATTTGTGTTTTGCTTTTTTTGGTTCTGATAAACAAACTGGACTCTGCTGAAAAAAATGTACTCTTGTTAGCTCATTGGTACCAGAAAAAAAAAAAAACATAAACAAGTATGTTATGGTAATTTAATTTTG</gDNA_template>
            <first_frame> A  *  V  A  Y  F  V  G  I  Q  I  E  D  T  T  E  A  R  E  K  Q  G  L  N  P  E  M  R  H  R  S  V  V  A  A  V  K  V  A  V  R  G  W  S  M  G  A  S  T  S  *  F  M  K  K  F  V  F  C  F  F  W  F  *  *  T  N  W  T  L  L  K  K  M  Y  S  C  *  L  I  G  T  R  K  K  K  K  H  K  Q  V  C  Y  G  N  L  I  L </first_frame>
            <second_frame>  H  R  S  R  I  L  L  A  F  R  *  K  I  L  P  R  L  G  R  N  K  D  *  I  R  K  *  G  I  A  V  L  *  L  L  *  R  W  L  *  E  G  G  Q  W  V  Q  V  P  P  S  S  *  R  N  L  C  F  A  F  F  G  S  D  K  Q  T  G  L  C  *  K  K  C  T  L  V  S  S  L  V  P  E  K  K  K  N  I  N  K  Y  V  M  V  I  *  F   </second_frame>
            <third_frame>   I  G  R  V  F  C  W  H  S  D  R  R  Y  Y  R  G  S  G  E  T  R  T  E  S  G  N  E  A  S  Q  C  C  S  C  C  K  G  G  C  E  R  V  V  N  G  C  K  Y  L  L  V  H  E  E  I  C  V  L  L  F  L  V  L  I  N  K  L  D  S  A  E  K  N  V  L  L  L  A  H  W  Y  Q  K  K  K  K  T  *  T  S  M  L  W  *  F  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32909" stop="32646"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGRVFCWHSDRRYYRGSGETRTESGNEASQCCSCCKGGCERVVNGCKYLLVHEEICVLLFLVLINKLDSAEKNVLLLAHWYQKKKKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41941" PGL_stop="42720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41941" e_stop="42205"/>
            <exon e_start="42596" e_stop="42720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="41941" e_stop="42205" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42206" i_stop="42595" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42596" e_stop="42720" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41941" stop="42205"/>
              <exon start="42596" stop="42720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATGTTATTTAACATTATGATATAATAAAATTTAAATAATAATTAAAGCTAAAACCATAAACACACTTGTAAGTTGTGAATAAATCTAACATTTTAATGAAAAATTGAACTTTTCGTTATAAAAAAAACGAAGCTTTGACACAGATCCAAAGCCTATCACACACAGCACCGATTTATTCCGGTCCGACTCACCACCGGTTCACCGCCGTGTTCCCGATCGGCAACCTCCCTGACTCTCTTCTCCGGTAACATCTCCGATCAG : GGAGTTACAGGGGAAATCATGAACTTCCTGATGCTGAGGTCTAATCAGACTGCAGCTTCTGAGCATTCACCTGCTCGTGGAGTGCAATCGGTGCCAACTCATGCTTCCAAACCAAGTACTACTTT</gDNA_template>
            <first_frame> F  H  V  I  *  H  Y  D  I  I  K  F  K  *  *  L  K  L  K  P  *  T  H  L  *  V  V  N  K  S  N  I  L  M  K  N  *  T  F  R  Y  K  K  N  E  A  L  T  Q  I  Q  S  L  S  H  T  A  P  I  Y  S  G  P  T  H  H  R  F  T  A  V  F  P  I  G  N  L  P  D  S  L  L  R  *  H  L  R  S   : G  S  Y  R  G  N  H  E  L  P  D  A  E  V  *  S  D  C  S  F  *  A  F  T  C  S  W  S  A  I  G  A  N  S  C  F  Q  T  K  Y  Y  F </first_frame>
            <second_frame>  F  M  L  F  N  I  M  I  *  *  N  L  N  N  N  *  S  *  N  H  K  H  T  C  K  L  *  I  N  L  T  F  *  *  K  I  E  L  F  V  I  K  K  T  K  L  *  H  R  S  K  A  Y  H  T  Q  H  R  F  I  P  V  R  L  T  T  G  S  P  P  C  S  R  S  A  T  S  L  T  L  F  S  G  N  I  S  D  Q  :  G  V  T  G  E  I  M  N  F  L  M  L  R  S  N  Q  T  A  A  S  E  H  S  P  A  R  G  V  Q  S  V  P  T  H  A  S  K  P  S  T  T   </second_frame>
            <third_frame>   S  C  Y  L  T  L  *  Y  N  K  I  *  I  I  I  K  A  K  T  I  N  T  L  V  S  C  E  *  I  *  H  F  N  E  K  L  N  F  S  L  *  K  K  R  S  F  D  T  D  P  K  P  I  T  H  S  T  D  L  F  R  S  D  S  P  P  V  H  R  R  V  P  D  R  Q  P  P  *  L  S  S  P  V  T  S  P  I  R :   E  L  Q  G  K  S  *  T  S  *  C  *  G  L  I  R  L  Q  L  L  S  I  H  L  L  V  E  C  N  R  C  Q  L  M  L  P  N  Q  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42083" stop="42205"/>
                    <exon start="42596" stop="42718"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRSKAYHTQHRFIPVRLTTGSPPCSRSATSLTLFSGNISDQGVTGEIMNFLMLRSNQTAASEHSPARGVQSVPTHASKPSTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44809" PGL_stop="46473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44809" e_stop="44940"/>
            <exon e_start="45909" e_stop="46473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.878" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44809" e_stop="44940" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.878" acc_prob="0.865">
            <gDNA_intron_boundary i_start="44941" i_stop="45908" i_length="968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45909" e_stop="46473" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44809" stop="44940"/>
              <exon start="45909" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45924" stop="46473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTGAAGACACTTAAAAAGAAGCTGTCTCTGAGTGCTTCCACTGATAAGGGAAACTTTGATGCTAGAACCTCTGGTGGAGTGGCAAGAAATGCTGTCAAGTGTTGTGCCCTTTCAAATGGAGATATAGTG : GTACTTTTACAAGTAAATGTCGGTATTGAGTTTGTGAGAGATCCCGTGCTTGAAATTCTTCAATTTGAGAAGTATTACGAGAGAAGTTTGTCGTCTTTGAATGAGGATAATTTGACTTATGCAAATCAGGATCCCTGTGGTGAACTGCTGAAATGGCTACTTCCTATAGATAATTCTATTCCTCCTTCCGCACGACCTTTATCCCCGCCTCAATTAAGTTCCAGTGCGAGCATTCGTAGCACATCCACGAAGCCCGTCGTATCTGGATCTTCTGGATCACAACTCTTTTCTTTCGGTAACTTTAGAAGTTACTCCATGTCTTCACTTCCACCAAATAGTGCGCCACCTCCATCTGTTACAACCTCCACCACTGGACCAAGTTTTAATCCAGAAGATTGGGAACGCTTTTCATTTCAAAGGTCAGTGAAGAGTGAAAAGATCGGGAGTGAAGGACTTTTATCTTTTAGAGGTGTATCTCTTGAGCCAGAAAGATTCTCGGTTCGTTGTGGTTTAGAAGGTATTTTCATCCCTGGAAGAAGATGGAGGAGGAAAATTGAAATAATTC</gDNA_template>
            <first_frame> T  V  K  T  L  K  K  K  L  S  L  S  A  S  T  D  K  G  N  F  D  A  R  T  S  G  G  V  A  R  N  A  V  K  C  C  A  L  S  N  G  D  I  V  :  V  L  L  Q  V  N  V  G  I  E  F  V  R  D  P  V  L  E  I  L  Q  F  E  K  Y  Y  E  R  S  L  S  S  L  N  E  D  N  L  T  Y  A  N  Q  D  P  C  G  E  L  L  K  W  L  L  P  I  D  N  S  I  P  P  S  A  R  P  L  S  P  P  Q  L  S  S  S  A  S  I  R  S  T  S  T  K  P  V  V  S  G  S  S  G  S  Q  L  F  S  F  G  N  F  R  S  Y  S  M  S  S  L  P  P  N  S  A  P  P  P  S  V  T  T  S  T  T  G  P  S  F  N  P  E  D  W  E  R  F  S  F  Q  R  S  V  K  S  E  K  I  G  S  E  G  L  L  S  F  R  G  V  S  L  E  P  E  R  F  S  V  R  C  G  L  E  G  I  F  I  P  G  R  R  W  R  R  K  I  E  I  I  </first_frame>
            <second_frame>  Q  *  R  H  L  K  R  S  C  L  *  V  L  P  L  I  R  E  T  L  M  L  E  P  L  V  E  W  Q  E  M  L  S  S  V  V  P  F  Q  M  E  I  *  W :   Y  F  Y  K  *  M  S  V  L  S  L  *  E  I  P  C  L  K  F  F  N  L  R  S  I  T  R  E  V  C  R  L  *  M  R  I  I  *  L  M  Q  I  R  I  P  V  V  N  C  *  N  G  Y  F  L  *  I  I  L  F  L  L  P  H  D  L  Y  P  R  L  N  *  V  P  V  R  A  F  V  A  H  P  R  S  P  S  Y  L  D  L  L  D  H  N  S  F  L  S  V  T  L  E  V  T  P  C  L  H  F  H  Q  I  V  R  H  L  H  L  L  Q  P  P  P  L  D  Q  V  L  I  Q  K  I  G  N  A  F  H  F  K  G  Q  *  R  V  K  R  S  G  V  K  D  F  Y  L  L  E  V  Y  L  L  S  Q  K  D  S  R  F  V  V  V  *  K  V  F  S  S  L  E  E  D  G  G  G  K  L  K  *  F </second_frame>
            <third_frame>   S  E  D  T  *  K  E  A  V  S  E  C  F  H  *  *  G  K  L  *  C  *  N  L  W  W  S  G  K  K  C  C  Q  V  L  C  P  F  K  W  R  Y  S   : G  T  F  T  S  K  C  R  Y  *  V  C  E  R  S  R  A  *  N  S  S  I  *  E  V  L  R  E  K  F  V  V  F  E  *  G  *  F  D  L  C  K  S  G  S  L  W  *  T  A  E  M  A  T  S  Y  R  *  F  Y  S  S  F  R  T  T  F  I  P  A  S  I  K  F  Q  C  E  H  S  *  H  I  H  E  A  R  R  I  W  I  F  W  I  T  T  L  F  F  R  *  L  *  K  L  L  H  V  F  T  S  T  K  *  C  A  T  S  I  C  Y  N  L  H  H  W  T  K  F  *  S  R  R  L  G  T  L  F  I  S  K  V  S  E  E  *  K  D  R  E  *  R  T  F  I  F  *  R  C  I  S  *  A  R  K  I  L  G  S  L  W  F  R  R  Y  F  H  P  W  K  K  M  E  E  E  N  *  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44809" stop="44940"/>
                    <exon start="45909" stop="46472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVKTLKKKLSLSASTDKGNFDARTSGGVARNAVKCCALSNGDIVVLLQVNVGIEFVRDPVLEILQFEKYYERSLSSLNEDNLTYANQDPCGELLKWLLPIDNSIPPSARPLSPPQLSSSASIRSTSTKPVVSGSSGSQLFSFGNFRSYSMSSLPPNSAPPPSVTTSTTGPSFNPEDWERFSFQRSVKSEKIGSEGLLSFRGVSLEPERFSVRCGLEGIFIPGRRWRRKIEII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49689" PGL_stop="51142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49689" e_stop="49925"/>
            <exon e_start="50000" e_stop="50103"/>
            <exon e_start="50812" e_stop="51142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="0.987"/>
          <exon-intron don_prob="0.710" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="49689" e_stop="49925" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="49926" i_stop="49999" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50000" e_stop="50103" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.710" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50104" i_stop="50811" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="50812" e_stop="51142" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49689" stop="49925"/>
              <exon start="50000" stop="50103"/>
              <exon start="50812" stop="51089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49876" stop="49925"/>
              <exon start="50000" stop="50103"/>
              <exon start="50812" stop="51142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244976" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG : ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG : GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</gDNA_template>
            <first_frame> D  I  T  N  E  S  L  H  W  F  F  *  F  Y  G  E  S  E  Y  *  *  A  N  *  C  C  S  E  Q  *  L  G  I  S  K  S  S  T  G  R  E  K  S  F  S  I  S  F  I  *  *  E  S  H  S  H  T  *  C  A  S  K  W  R  F  R  L  Y  T  S  M  V  A  E  Q  S  S  L  G  :  M  C  A  R  S  I  Y  S  N  H  Q  T  *  S  T  S  P  D  G  W  Y  N  H  T  *  F  F  T  D  *  C  K  G  E  R :   C  D  I  C  S  *  A  F  S  E  D  Q  C  N  F  K  H  F  H  W  D  Y  L  R  *  L  F  T  V  F  R  R  R  K  W  T  E  R  Y  S  *  W  *  C  H  T  *  M  I  S  *  V  *  C  K  F  E  E  S  L  *  C  V  M  I  L  C  R  F  I  K  C  Q  R  *  E  W  I  M  *  R  D  C  D  C  T  L  L  *  M  M  L  C  S  I  *  S  T  N  *  G  E  N  *  K  A  N  D  K  D </first_frame>
            <second_frame>  T  S  P  M  S  P  F  I  G  S  S  D  F  T  E  R  V  S  I  D  K  Q  I  S  A  A  P  S  N  S  S  V  S  V  N  Q  V  P  E  G  K  N  L  S  Q  S  V  S  F  S  E  R  A  T  P  I  P  D  V  L  P  S  G  D  S  G  C  T  H  L  W  L  Q  S  R  V  P  L  G :   C  V  P  A  Q  S  T  A  T  I  K  L  E  V  L  P  L  T  D  G  I  I  T  L  D  S  L  Q  I  D  V  K  E  K   : G  V  T  Y  V  P  E  H  S  L  K  I  N  A  T  S  S  I  S  T  G  I  I  *  G  D  Y  L  Q  F  S  D  V  V  S  G  Q  K  D  T  H  S  G  S  V  I  R  R  *  Y  R  E  F  D  V  N  L  R  S  P  F  D  V  *  *  F  C  V  D  L  *  N  A  K  G  E  N  G  L  C  E  G  I  V  T  V  P  Y  C  R  *  C  Y  V  Q  F  E  V  P  T  R  G  K  I  E  K  Q  M  I  R   </second_frame>
            <third_frame>   H  H  Q  *  V  P  S  L  V  L  L  I  L  R  R  E  *  V  L  I  S  K  L  V  L  L  R  A  I  A  R  Y  Q  *  I  K  Y  R  K  G  K  I  F  L  N  Q  F  H  L  V  R  E  P  L  P  Y  L  M  C  F  Q  V  A  I  Q  V  V  H  I  Y  G  C  R  A  E  F  P  W   : D  V  C  P  L  N  L  Q  Q  P  S  N  L  K  Y  F  P  *  R  M  V  *  S  H  L  I  L  Y  R  L  M  *  R  R  K  :  V  *  H  M  F  L  S  I  L  *  R  S  M  Q  L  Q  A  F  P  L  G  L  S  E  V  T  I  Y  S  F  Q  T  S  *  V  D  R  K  I  L  I  V  V  V  S  Y  V  D  D  I  V  S  L  M  *  I  *  G  V  P  L  M  C  D  D  F  V  *  I  Y  K  M  P  K  V  R  M  D  Y  V  K  G  L  *  L  Y  L  I  V  D  D  V  M  F  N  L  K  Y  Q  L  G  G  K  L  K  S  K  *  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49690" stop="49925"/>
                    <exon start="50000" stop="50103"/>
                    <exon start="50812" stop="50882"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPMSPFIGSSDFTERVSIDKQISAAPSNSSVSVNQVPEGKNLSQSVSFSERATPIPDVLPSGDSGCTHLWLQSRVPLGCVPAQSTATIKLEVLPLTDGIITLDSLQIDVKEKGVTYVPEHSLKINATSSISTGII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54258" PGL_stop="56985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54258" e_stop="54911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="54258" e_stop="54911" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54258" stop="54911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54278" stop="54782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54278" stop="54773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54278" stop="54771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54290" stop="54767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</gDNA_template>
            <first_frame> N  Y  S  K  H  K  P  Q  I  Q  F  F  L  K  K  K  H  I  P  N  G  L  F  Y  Y  *  L  F  F  M  E  I  H  V  L  N  S  H  I  I  S  C  S  W  L  C  F  F  S  E  N  I  V  D  D  E  F  K  R  *  R  R  L  Y  T  I  F  R  T  I  S  K  I  *  R  R  L  Y  T  I  F  R  I  I  S  E  I  L  R  *  K  *  K  E  R  V  S  K  E  *  F  V  S  Y  A  T  K  R  D  S  N  S  S  F  W  T  I  T  *  T  Q  W  R  W  *  L  I  *  L  S  L  K  V  N  *  L  L  N  N  K  E  *  L  C  Y  N  H  I  *  F  H  L  D  I  I  F  H  N  M  I  C  N  N  T  I  I  I  D  *  L  K  S  L  S  G  L  I  I  Y  S  Y  Y  K  N  *  E  G  Y  *  S  C  Y  L  Q  L  C  *  V  Y  M  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  M  K  I  Q  I </first_frame>
            <second_frame>  I  I  Q  N  I  N  P  R  F  N  F  F  *  K  K  N  I  F  L  M  A  Y  S  T  T  N  Y  S  S  W  K  F  M  Y  L  I  L  T  L  S  L  V  L  G  Y  A  S  S  V  R  I  S  S  T  M  N  S  K  D  E  D  A  Y  T  L  F  S  E  P  S  P  K  Y  E  D  A  Y  T  L  F  S  E  S  S  P  R  Y  Y  D  E  N  E  K  K  E  F  Q  K  S  N  L  F  H  M  L  P  K  G  T  L  I  P  P  S  G  P  S  R  R  H  N  G  D  G  D  L  S  N  Y  P  *  K  L  I  N  C  L  I  I  K  N  N  Y  V  I  I  I  Y  S  F  I  W  I  *  Y  F  I  T  *  Y  V  T  I  L  L  L  *  T  D  *  R  A  Y  L  V  *  L  Y  I  V  I  I  K  I  K  K  V  I  N  L  V  I  Y  N  Y  V  E  F  I  C  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  K  F  K   </second_frame>
            <third_frame>   L  F  K  T  *  T  P  D  S  I  F  F  K  K  K  T  Y  S  *  W  L  I  L  L  L  I  I  L  H  G  N  S  C  T  *  F  S  H  Y  L  L  F  L  A  M  L  L  Q  *  E  Y  R  R  R  *  I  Q  K  M  K  T  L  I  H  Y  F  Q  N  H  L  Q  N  M  K  T  L  I  H  Y  F  Q  N  H  L  R  D  I  T  M  K  M  K  R  K  S  F  K  R  V  I  C  F  I  C  Y  Q  K  G  L  *  F  L  L  L  D  H  H  V  D  T  M  E  M  V  T  Y  L  I  I  L  K  S  *  L  I  A  *  *  *  R  I  I  M  L  *  S  Y  I  V  S  F  G  Y  N  I  S  *  H  D  M  *  Q  Y  Y  Y  Y  R  L  I  E  E  P  I  W  F  N  Y  I  *  L  L  *  K  L  R  R  L  L  I  L  L  F  T  I  M  L  S  L  Y  A  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  E  N  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54298" stop="54651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNIFLMAYSTTNYSSWKFMYLILTLSLVLGYASSVRISSTMNSKDEDAYTLFSEPSPKYEDAYTLFSESSPRYYDENEKKEFQKSNLFHMLPKGTLIPPSGPSRRHNGDGDLSNYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54286" e_stop="54755"/>
            <exon e_start="56925" e_stop="56985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.985"/>
          <exon-only e_score="0.754"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="54286" e_stop="54755" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54756" i_stop="56924" i_length="2169"/>
          </intron>
          <exon e_serial="2" e_score="0.754">
            <gDNA_exon_boundary e_start="56925" e_stop="56985" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54286" stop="54755"/>
              <exon start="56925" stop="56985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATT : ATAAAAATAAAATAATAAAGAAACAAGGAAAAGAAAAAATGATGAAAAAAAAGGGAAAAAA</gDNA_template>
            <first_frame> N  F  F  *  K  K  N  I  F  L  M  A  Y  S  T  T  N  Y  S  S  W  K  F  M  Y  L  I  L  T  L  S  L  V  L  G  Y  A  S  S  V  R  I  S  S  T  M  N  S  K  D  E  D  A  Y  T  L  F  S  E  P  S  P  K  Y  E  D  A  Y  T  L  F  S  E  S  S  P  R  Y  Y  D  E  N  E  K  K  E  F  Q  K  S  N  L  F  H  M  L  P  K  G  T  L  I  P  P  S  G  P  S  R  R  H  N  G  D  G  D  L  S  N  Y  P  *  K  L  I  N  C  L  I  I  K  N  N  Y  V  I  I  I  Y  S  F  I  W  I  *  Y  F  I  T  *  Y  V  T  I  L  L  L :   *  K  *  N  N  K  E  T  R  K  R  K  N  D  E  K  K  G  K  K </first_frame>
            <second_frame>  I  F  F  K  K  K  T  Y  S  *  W  L  I  L  L  L  I  I  L  H  G  N  S  C  T  *  F  S  H  Y  L  L  F  L  A  M  L  L  Q  *  E  Y  R  R  R  *  I  Q  K  M  K  T  L  I  H  Y  F  Q  N  H  L  Q  N  M  K  T  L  I  H  Y  F  Q  N  H  L  R  D  I  T  M  K  M  K  R  K  S  F  K  R  V  I  C  F  I  C  Y  Q  K  G  L  *  F  L  L  L  D  H  H  V  D  T  M  E  M  V  T  Y  L  I  I  L  K  S  *  L  I  A  *  *  *  R  I  I  M  L  *  S  Y  I  V  S  F  G  Y  N  I  S  *  H  D  M  *  Q  Y  Y  Y   : Y  K  N  K  I  I  K  K  Q  G  K  E  K  M  M  K  K  K  G  K   </second_frame>
            <third_frame>   F  F  L  K  K  K  H  I  P  N  G  L  F  Y  Y  *  L  F  F  M  E  I  H  V  L  N  S  H  I  I  S  C  S  W  L  C  F  F  S  E  N  I  V  D  D  E  F  K  R  *  R  R  L  Y  T  I  F  R  T  I  S  K  I  *  R  R  L  Y  T  I  F  R  I  I  S  E  I  L  R  *  K  *  K  E  R  V  S  K  E  *  F  V  S  Y  A  T  K  R  D  S  N  S  S  F  W  T  I  T  *  T  Q  W  R  W  *  L  I  *  L  S  L  K  V  N  *  L  L  N  N  K  E  *  L  C  Y  N  H  I  *  F  H  L  D  I  I  F  H  N  M  I  C  N  N  T  I  I  :  I  K  I  K  *  *  R  N  K  E  K  K  K  *  *  K  K  R  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54298" stop="54651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNIFLMAYSTTNYSSWKFMYLILTLSLVLGYASSVRISSTMNSKDEDAYTLFSEPSPKYEDAYTLFSESSPRYYDENEKKEFQKSNLFHMLPKGTLIPPSGPSRRHNGDGDLSNYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62623" PGL_stop="68714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62623" e_stop="62868"/>
            <exon e_start="64500" e_stop="64834"/>
            <exon e_start="64940" e_stop="65075"/>
            <exon e_start="67233" e_stop="67369"/>
            <exon e_start="67446" e_stop="67569"/>
            <exon e_start="67941" e_stop="68714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62623" e_stop="62868" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.938">
            <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64500" e_stop="64834" e_length="335"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64835" i_stop="64939" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64940" e_stop="65075" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65076" i_stop="67232" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67233" e_stop="67369" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.664" acc_prob="0.959">
            <gDNA_intron_boundary i_start="67370" i_stop="67445" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67446" e_stop="67569" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="67570" i_stop="67940" i_length="371"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67941" e_stop="68714" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62623" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="65075"/>
              <exon start="67233" stop="67369"/>
              <exon start="67446" stop="67569"/>
              <exon start="67941" stop="68668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62662" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="65075"/>
              <exon start="67233" stop="67303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62663" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="64950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62668" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="65075"/>
              <exon start="67233" stop="67369"/>
              <exon start="67446" stop="67463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62678" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="65075"/>
              <exon start="67233" stop="67369"/>
              <exon start="67446" stop="67479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62704" stop="62868"/>
              <exon start="64500" stop="64834"/>
              <exon start="64940" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62705" stop="62868"/>
              <exon start="64500" stop="64721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62715" stop="62868"/>
              <exon start="64500" stop="64676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64745" stop="64834"/>
              <exon start="64940" stop="65075"/>
              <exon start="67233" stop="67369"/>
              <exon start="67446" stop="67569"/>
              <exon start="67941" stop="68194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67989" stop="68714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG : AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG : GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA : GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG : GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG : GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA</gDNA_template>
            <first_frame> G  G  G  V  V  G  G  V  F  M  I  F  E  F  D  F  R  Y  C  K  I  W  D  *  V  V  M  V  K  R  G  S  L  G  M  *  R  N  Q  R  G  R  R  R  K  R  L  L  K  R  K  L  D  V  G  L  S  C  G  L  L  V  A  V  S  L  Q  D  L  K  L  I  A  P  *  V  A  S  V  L  T  V  :  K  V  N  L  Q  M  T  Q  A  E  T  N  L  L  H  Q  L  S  H  L  R  L  P  A  M  R  K  V  I  H  P  P  P  N  L  K  R  S  L  K  F  L  L  G  F  E  N  S  H  L  T  I  *  S  W  Q  Q  E  T  S  D  Q  S  P  F  L  V  K  G  V  S  D  V  S  S  R  G  G  S  K  R  M  A  Q  H  L  L  N  Q  G  Q  G  L  L  L  L  *  K  L  *  I  M  M  D  F  R  V  T  K  N  G  W :   L  K  *  I  S  W  V  I  S  F  T  L  I  W  L  N  *  L  V  T  A  L  K  M  I  R  D  C  *  F  M  N  L  C  L  E  E  A  W  K  I  I  C  S  G  :  D  P  C  L  F  L  G  L  S  A  *  R  L  L  W  V  L  Q  K  V  L  L  F  F  T  R  K  Q  K  D  Q  *  Y  I  V  I  S  K  H  P  T  F  Y  *  T  R :   I  T  M  P  N  F  L  I  L  V  L  P  K  M  V  L  R  V  I  R  H  M  F  L  L  V  S  W  E  R  M  V  M  Q  P  L  S  M  *  *  Q  :  G  I  *  R  Q  R  V  T  S  T  V  L  G  *  F  Y  L  K  *  *  Q  V  G  D  R  W  T  R  T  D  Q  M  G  N  T  T  L  L  N  G  H  G  L  I  L  V  K  E  E  G  F  T  D  W  *  T  L  D  L  K  V  I  F  Q  *  K  V  L  R  K  L  H  S  W  L  L  V  A  L  V  V  I  P  K  L  G  L  *  *  V  K  W  *  K  P  *  S  H  Y  Q  I  L  K  T  W  P  A  H  P  T  I  S  R  Q  C  K  Q  T  E  L  D  Q  V  Q  V  P  K  M  A  L  G  H  R  D  H  S  R  G  M  D  N  N  I  L  E  V  F  Q  S  Q  M  V  L  M  L  L  H  T  I  N  S  F  L  R  T  H  Q  N  Q  T  A  K  L  S  I  I  G  L  T  S  N  L  F  L  S  F  F  S  F  S  L  Q  L  *  I  Y  F  V  G  H  L  P  F  C  R  W  M  N  W  Q  K  G  R  S  A  Q  L  T  *  V  V  I  F  E  N  A  E  L  P  L  E  K  N  V  L  *  A  E  L  K  S  M  E  *  I  L  C  R  M  Y  L  S  F  S  *  F  S  Q </first_frame>
            <second_frame>  E  V  G  L  L  V  G  F  S  *  Y  L  S  L  I  L  G  I  A  K  Y  G  I  R  W  *  W  *  K  G  G  V  L  G  C  R  E  I  K  G  E  E  E  E  R  G  C  *  R  G  N  W  M  L  D  *  V  V  V  Y  W  *  L  Y  L  F  K  I  *  S  *  *  L  H  K  W  H  Q  Y  S  L  * :   K  *  I  Y  K  *  H  K  Q  R  P  T  C  C  T  N  Y  L  I  Y  D  Y  Q  Q  C  G  K  *  F  I  H  L  Q  T  *  R  G  A  *  S  F  F  S  A  S  K  I  R  I  *  R  F  E  V  G  N  K  K  L  Q  T  R  V  P  S  W  *  R  G  F  R  M  C  L  Q  G  V  D  R  R  E  W  H  S  T  C  *  T  R  D  R  A  Y  C  C  C  E  N  S  K  S  *  W  T  S  G  S  Q  R  M  A   : G  *  S  E  F  P  G  *  S  R  S  P  *  F  G  *  T  D  W  L  L  H  *  R  *  S  E  T  V  S  L  *  I  Y  A  S  R  K  L  G  K  S  S  V  Q  E :   I  H  A  S  S  L  V  Y  P  H  E  D  C  S  G  C  C  K  R  S  C  F  S  S  R  G  S  R  K  T  S  N  I  S  *  F  Q  N  I  Q  H  S  T  R  R   : G  L  Q  C  Q  T  F  *  F  W  S  C  Q  R  W  S  *  G  *  *  D  T  C  F  Y  S  C  H  G  N  V  W  L  C  S  P  *  V  C  D  D  R :   A  S  N  V  K  E  *  R  L  Q  F  W  G  S  S  T  *  N  D  N  R  *  E  I  D  G  Q  E  P  T  K  W  G  T  Q  P  C  *  M  G  T  A  S  S  W  *  K  K  K  V  L  Q  I  G  R  P  *  T  *  R  S  F  F  N  K  R  C  S  E  S  C  T  V  G  C  S  L  P  *  S  *  S  Q  S  *  A  Y  D  E  *  S  G  R  S  L  E  A  I  T  K  S  *  R  H  G  Q  L  I  L  L  F  P  D  N  A  S  R  P  S  W  I  K  S  K  Y  Q  K  W  R  *  D  T  G  I  I  L  E  E  W  T  T  T  S  *  K  S  F  N  P  K  W  F  S  C  F  S  I  P  S  T  V  S  S  E  L  T  K  T  K  R  Q  N  L  V  L  L  D  *  Q  V  I  C  F  Y  H  S  F  R  F  L  S  S  Y  E  Y  I  L  L  A  T  S  R  F  V  V  G  *  T  G  K  R  E  G  V  H  N  *  L  K  L  *  S  L  K  M  L  N  S  H  L  K  R  M  Y  C  K  R  S  S  S  P  W  S  K  Y  C  V  E  C  T  S  P  S  A  D  F  R   </second_frame>
            <third_frame>   R  W  G  C  W  W  G  F  H  D  I  *  V  *  F  *  V  L  Q  N  M  G  L  G  G  D  G  E  K  G  E  S  W  D  V  E  K  S  K  G  K  K  K  K  E  V  V  E  E  E  T  G  C  W  T  K  L  W  F  I  G  S  C  I  S  S  R  S  K  V  D  S  S  I  S  G  I  S  T  H  C   : E  S  K  S  T  N  D  T  S  R  D  Q  P  V  A  P  I  I  S  S  T  T  T  S  N  A  E  S  N  S  S  T  S  K  L  E  E  E  L  K  V  S  S  R  L  R  K  F  A  F  N  D  L  K  L  A  T  R  N  F  R  P  E  S  L  L  G  E  G  G  F  G  C  V  F  K  G  W  I  E  E  N  G  T  A  P  V  K  P  G  T  G  L  T  V  A  V  K  T  L  N  H  D  G  L  Q  G  H  K  E  W  L  :  A  E  V  N  F  L  G  D  L  V  H  P  N  L  V  K  L  I  G  Y  C  I  E  D  D  Q  R  L  L  V  Y  E  F  M  P  R  G  S  L  E  N  H  L  F  R   : R  S  M  P  L  P  W  S  I  R  M  K  I  A  L  G  A  A  K  G  L  A  F  L  H  E  E  A  E  R  P  V  I  Y  R  D  F  K  T  S  N  I  L  L  D  A  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  D  G  P  E  G  D  K  T  H  V  S  T  R  V  M  G  T  Y  G  Y  A  A  P  E  Y  V  M  T   : G  H  L  T  S  K  S  D  V  Y  S  F  G  V  V  L  L  E  M  I  T  G  R  R  S  M  D  K  N  R  P  N  G  E  H  N  L  V  E  W  A  R  P  H  L  G  E  R  R  R  F  Y  R  L  V  D  P  R  L  E  G  H  F  S  I  K  G  A  Q  K  A  A  Q  L  A  A  R  C  L  S  R  D  P  K  V  R  P  M  M  S  E  V  V  E  A  L  K  P  L  P  N  L  K  D  M  A  S  S  S  Y  Y  F  Q  T  M  Q  A  D  R  V  G  S  S  P  S  T  K  N  G  V  R  T  Q  G  S  F  S  R  N  G  Q  Q  H  P  R  S  L  S  I  P  N  G  S  H  A  S  P  Y  H  Q  Q  F  P  Q  N  S  P  K  P  N  G  K  T  *  Y  Y  W  I  D  K  *  S  V  S  I  I  L  F  V  F  S  P  A  M  N  I  F  C  W  P  P  P  V  L  S  L  D  E  L  A  K  G  K  E  C  T  I  N  L  S  C  D  L  *  K  C  *  T  P  T  *  K  E  C  I  V  S  G  A  Q  V  H  G  V  N  I  V  S  N  V  P  L  L  Q  L  I  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62673" stop="62868"/>
                    <exon start="64500" stop="64834"/>
                    <exon start="64940" stop="65075"/>
                    <exon start="67233" stop="67369"/>
                    <exon start="67446" stop="67569"/>
                    <exon start="67941" stop="68461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQNMGLGGDGEKGESWDVEKSKGKKKKEVVEEETGCWTKLWFIGSCISSRSKVDSSISGISTHCESKSTNDTSRDQPVAPIISSTTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLVDPRLEGHFSIKGAQKAAQLAARCLSRDPKVRPMMSEVVEALKPLPNLKDMASSSYYFQTMQADRVGSSPSTKNGVRTQGSFSRNGQQHPRSLSIPNGSHASPYHQQFPQNSPKPNGKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62669" e_stop="62868"/>
            <exon e_start="64500" e_stop="64863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62669" e_stop="62868" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.938">
            <gDNA_intron_boundary i_start="62869" i_stop="64499" i_length="1631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64500" e_stop="64863" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62669" stop="62868"/>
              <exon start="64500" stop="64863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62705" stop="62868"/>
              <exon start="64500" stop="64721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62715" stop="62868"/>
              <exon start="64500" stop="64676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG : AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</gDNA_template>
            <first_frame> L  G  I  A  K  Y  G  I  R  W  *  W  *  K  G  G  V  L  G  C  R  E  I  K  G  E  E  E  E  R  G  C  *  R  G  N  W  M  L  D  *  V  V  V  Y  W  *  L  Y  L  F  K  I  *  S  *  *  L  H  K  W  H  Q  Y  S  L  * :   K  *  I  Y  K  *  H  K  Q  R  P  T  C  C  T  N  Y  L  I  Y  D  Y  Q  Q  C  G  K  *  F  I  H  L  Q  T  *  R  G  A  *  S  F  F  S  A  S  K  I  R  I  *  R  F  E  V  G  N  K  K  L  Q  T  R  V  P  S  W  *  R  G  F  R  M  C  L  Q  G  V  D  R  R  E  W  H  S  T  C  *  T  R  D  R  A  Y  C  C  C  E  N  S  K  S  *  W  T  S  G  S  Q  R  M  A  G  L  Q  L  S  S  F  I  Y  * </first_frame>
            <second_frame>  *  V  L  Q  N  M  G  L  G  G  D  G  E  K  G  E  S  W  D  V  E  K  S  K  G  K  K  K  K  E  V  V  E  E  E  T  G  C  W  T  K  L  W  F  I  G  S  C  I  S  S  R  S  K  V  D  S  S  I  S  G  I  S  T  H  C   : E  S  K  S  T  N  D  T  S  R  D  Q  P  V  A  P  I  I  S  S  T  T  T  S  N  A  E  S  N  S  S  T  S  K  L  E  E  E  L  K  V  S  S  R  L  R  K  F  A  F  N  D  L  K  L  A  T  R  N  F  R  P  E  S  L  L  G  E  G  G  F  G  C  V  F  K  G  W  I  E  E  N  G  T  A  P  V  K  P  G  T  G  L  T  V  A  V  K  T  L  N  H  D  G  L  Q  G  H  K  E  W  L  V  C  S  S  L  L  L  F  I   </second_frame>
            <third_frame>   R  Y  C  K  I  W  D  *  V  V  M  V  K  R  G  S  L  G  M  *  R  N  Q  R  G  R  R  R  K  R  L  L  K  R  K  L  D  V  G  L  S  C  G  L  L  V  A  V  S  L  Q  D  L  K  L  I  A  P  *  V  A  S  V  L  T  V  :  K  V  N  L  Q  M  T  Q  A  E  T  N  L  L  H  Q  L  S  H  L  R  L  P  A  M  R  K  V  I  H  P  P  P  N  L  K  R  S  L  K  F  L  L  G  F  E  N  S  H  L  T  I  *  S  W  Q  Q  E  T  S  D  Q  S  P  F  L  V  K  G  V  S  D  V  S  S  R  G  G  S  K  R  M  A  Q  H  L  L  N  Q  G  Q  G  L  L  L  L  *  K  L  *  I  M  M  D  F  R  V  T  K  N  G  W  F  A  A  L  F  F  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62673" stop="62868"/>
                    <exon start="64500" stop="64861"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQNMGLGGDGEKGESWDVEKSKGKKKKEVVEEETGCWTKLWFIGSCISSRSKVDSSISGISTHCESKSTNDTSRDQPVAPIISSTTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLVCSSLLLFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73768" PGL_stop="68722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73768" e_stop="73451"/>
            <exon e_start="72602" e_stop="72453"/>
            <exon e_start="72346" e_stop="72131"/>
            <exon e_start="71572" e_stop="71451"/>
            <exon e_start="71191" e_stop="71028"/>
            <exon e_start="70300" e_stop="70146"/>
            <exon e_start="69635" e_stop="69237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73768" e_stop="73451" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72602" e_stop="72453" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72346" e_stop="72131" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71572" e_stop="71451" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71191" e_stop="71028" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70300" e_stop="70146" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69635" e_stop="69237" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73760" stop="73481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73754" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73741" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73740" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73739" stop="73477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73722" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73715" stop="73451"/>
              <exon start="72602" stop="72485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73666" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73524" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73524" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73514" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72505" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72332" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72330" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72318" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72166" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71462" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71165" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71069" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70285" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70172" stop="70146"/>
              <exon start="69635" stop="69241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K  I  S </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  L   </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73768" stop="73451"/>
                    <exon start="72602" stop="72453"/>
                    <exon start="72346" stop="72131"/>
                    <exon start="71572" stop="71451"/>
                    <exon start="71191" stop="71028"/>
                    <exon start="70300" stop="70146"/>
                    <exon start="69635" stop="69537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73768" e_stop="73451"/>
            <exon e_start="72602" e_stop="72453"/>
            <exon e_start="72346" e_stop="72131"/>
            <exon e_start="71572" e_stop="71451"/>
            <exon e_start="71191" e_stop="71028"/>
            <exon e_start="70300" e_stop="70146"/>
            <exon e_start="69635" e_stop="69329"/>
            <exon e_start="68759" e_stop="68722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73768" e_stop="73451" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72602" e_stop="72453" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="72452" i_stop="72347" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72346" e_stop="72131" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71572" e_stop="71451" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71191" e_stop="71028" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70300" e_stop="70146" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69635" e_stop="69329" e_length="307"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69328" i_stop="68760" i_length="569"/>
          </intron>
          <exon e_serial="8" e_score="0.553">
            <gDNA_exon_boundary e_start="68759" e_stop="68722" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73760" stop="73481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73754" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73741" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73740" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73739" stop="73477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73722" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73715" stop="73451"/>
              <exon start="72602" stop="72485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73666" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73524" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73524" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73514" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72505" stop="72453"/>
              <exon start="72346" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72332" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72330" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72318" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71165" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71145" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69329"/>
              <exon start="68759" stop="68722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGA : GCCTAAAAGGAACAAGATCAAAATATAGGCCGAAAATA</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *   : S  L  K  G  T  R  S  K  Y  R  P  K  I </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  :  A  *  K  E  Q  D  Q  N  I  G  R  K   </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  E :   P  K  R  N  K  I  K  I  *  A  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73768" stop="73451"/>
                    <exon start="72602" stop="72453"/>
                    <exon start="72346" stop="72131"/>
                    <exon start="71572" stop="71451"/>
                    <exon start="71191" stop="71028"/>
                    <exon start="70300" stop="70146"/>
                    <exon start="69635" stop="69537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73760" e_stop="73451"/>
            <exon e_start="72602" e_stop="72453"/>
            <exon e_start="72351" e_stop="72131"/>
            <exon e_start="71572" e_stop="71451"/>
            <exon e_start="71191" e_stop="71028"/>
            <exon e_start="70300" e_stop="70146"/>
            <exon e_start="69635" e_stop="69237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73760" e_stop="73451" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73450" i_stop="72603" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="72602" e_stop="72453" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72452" i_stop="72352" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72351" e_stop="72131" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="72130" i_stop="71573" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71572" e_stop="71451" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71191" e_stop="71028" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70300" e_stop="70146" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69635" e_stop="69237" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73760" stop="73481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73739" stop="73477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73715" stop="73451"/>
              <exon start="72602" stop="72485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73663" stop="73451"/>
              <exon start="72602" stop="72453"/>
              <exon start="72351" stop="72131"/>
              <exon start="71572" stop="71495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72340" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72332" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72330" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72318" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72166" stop="72131"/>
              <exon start="71572" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71462" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71165" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71069" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70285" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70172" stop="70146"/>
              <exon start="69635" stop="69241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : TGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</gDNA_template>
            <first_frame> S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : V  Q  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K  I  S </first_frame>
            <second_frame>  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  C  R  *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  L   </second_frame>
            <third_frame>   P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   A  G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72462" stop="72453"/>
                    <exon start="72351" stop="72131"/>
                    <exon start="71572" stop="71451"/>
                    <exon start="71191" stop="71028"/>
                    <exon start="70300" stop="70146"/>
                    <exon start="69635" stop="69537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIWVQVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73759" stop="73451"/>
                    <exon start="72602" stop="72453"/>
                    <exon start="72351" stop="72343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="71701" e_stop="71451"/>
            <exon e_start="71191" e_stop="71028"/>
            <exon e_start="70300" e_stop="70146"/>
            <exon e_start="69635" e_stop="69241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71701" e_stop="71451" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71450" i_stop="71192" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71191" e_stop="71028" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="71027" i_stop="70301" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70300" e_stop="70146" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70145" i_stop="69636" i_length="510"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69635" e_stop="69241" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71701" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71701" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71462" stop="71451"/>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71191" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71165" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71144" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71069" stop="71028"/>
              <exon start="70300" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70285" stop="70146"/>
              <exon start="69635" stop="69324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70172" stop="70146"/>
              <exon start="69635" stop="69241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</gDNA_template>
            <first_frame> R  S  R  E  R  N  F  M  F  I  L  A  N  F  Y  F  S  L  V  K  V  T  S  K  *  S  H  R  W  S  A  F  Y  L  H  G  T  S  F  F  F  L  *  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K   </first_frame>
            <second_frame>  E  V  E  K  E  I  S  C  L  S  W  L  T  S  I  F  L  *  *  R  S  L  L  N  N  L  I  D  G  Q  L  F  I  Y  T  E  L  H  F  F  S  C  R  K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  </second_frame>
            <third_frame>   K  *  R  K  K  F  H  V  Y  P  G  *  L  L  F  F  S  S  E  G  H  F  *  I  I  S  *  M  V  S  F  L  F  T  R  N  F  I  F  F  L  V  G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71572" stop="71451"/>
                    <exon start="71191" stop="71028"/>
                    <exon start="70300" stop="70146"/>
                    <exon start="69635" stop="69537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="77220" PGL_stop="79661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77220" e_stop="77520"/>
            <exon e_start="78166" e_stop="78296"/>
            <exon e_start="78553" e_stop="78607"/>
            <exon e_start="78760" e_stop="78861"/>
            <exon e_start="79024" e_stop="79144"/>
            <exon e_start="79588" e_stop="79661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.963" e_score="0.977"/>
          <exon-intron don_prob="0.922" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.945" e_score="0.967"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="77220" e_stop="77520" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.963">
            <gDNA_intron_boundary i_start="77521" i_stop="78165" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78166" e_stop="78296" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78297" i_stop="78552" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78553" e_stop="78607" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78608" i_stop="78759" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78760" e_stop="78861" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78862" i_stop="79023" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="79024" e_stop="79144" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.945">
            <gDNA_intron_boundary i_start="79145" i_stop="79587" i_length="443"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="79588" e_stop="79661" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77220" stop="77520"/>
              <exon start="78166" stop="78296"/>
              <exon start="78553" stop="78607"/>
              <exon start="78760" stop="78861"/>
              <exon start="79024" stop="79144"/>
              <exon start="79588" stop="79661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77221" stop="77520"/>
              <exon start="78166" stop="78296"/>
              <exon start="78553" stop="78580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77292" stop="77520"/>
              <exon start="78166" stop="78296"/>
              <exon start="78553" stop="78607"/>
              <exon start="78760" stop="78767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77318" stop="77520"/>
              <exon start="78166" stop="78211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG : GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG : TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG : GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG : GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG : GATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</gDNA_template>
            <first_frame> M  I  F  R  *  D  L  L  I  G  K  N  V  D  S  Y  Y  G  A  S  R  R  P  L  S  P  A  K  P  K  A  I  S  K  S  E  E  N  L  S  F  F  S  K  F  L  S  E  A  T  L  R  Y  R  N  F  E  I  L  R  L  S  A  *  P  D  G  T  Y  Q  S  *  L  H  R  C  C  R  H  *  D  V  G  T  V  G  R  S  F  *  G  D  F  L  V  E  T  T  G  K   : G  *  R  K  D  I  H  Q  I  G  *  G  E  G  *  R  E  L  E  P  H  C  G  M  *  F  A  R  E  M  D  P  S  L  G  G  P  L  Y  R  *  H  W  Q  :  *  M  G  S  T  S  S  R  D  A  A  V  R  F  N  C  H  K   : G  L  C  N  *  N  S  F  A  R  R  H  I  S  R  G  E  D  R  H  K  F  *  V  V  Y  S  S  Y  K  F  C  V  E   : G  *  G  N  W  S  L  V  S  A  Q  R  A  G  L  Q  D  S  S  C  *  L  P  *  Q  *  C  *  Y  R  W  C  *  K  G  V  E  H  M  V  R :   I  T  R  K  A  V  Q  H  T  P  *  S  R  S  F  S  F  *  R  G  I  K  Q  Q  </first_frame>
            <second_frame>  *  F  S  G  E  I  Y  *  S  E  K  M  S  T  V  T  M  E  P  L  V  G  H  Y  L  R  R  S  P  K  L  Y  P  N  Q  K  K  T  S  H  F  S  L  N  F  S  R  R  P  L  S  G  T  A  T  L  R  F  C  D  Y  R  R  S  R  T  V  P  I  R  A  S  S  T  D  A  A  V  I  E  T  S  E  Q  S  D  V  V  F  K  E  T  F  S  L  K  R  P  E  R  :  A  E  G  K  I  S  I  R  L  D  K  G  K  D  E  E  N  W  N  L  T  V  G  C  S  L  P  G  K  W  I  L  H  W  G  V  H  Y  T  D  D  T  G  S :   E  W  D  Q  P  P  P  E  M  R  P  S  G  S  I  A  I  K  :  D  Y  A  I  E  T  P  L  Q  G  D  T  F  Q  E  V  K  I  D  I  S  S  K  W  S  I  A  A  I  N  F  V  L  K  :  D  E  E  T  G  V  W  Y  Q  H  R  G  R  D  F  K  I  P  L  V  D  C  L  D  N  D  A  N  I  V  G  V  K  K  E  S  N  I  W  S   : G  S  L  G  K  L  S  N  I  L  L  N  P  E  A  S  P  S  K  G  E  S  S  S  N </second_frame>
            <third_frame>   D  F  Q  V  R  S  T  D  R  K  K  C  R  Q  L  L  W  S  L  S  S  A  I  I  S  G  E  A  Q  S  Y  I  Q  I  R  R  K  P  L  I  F  L  *  I  S  L  G  G  H  S  P  V  P  Q  L  *  D  S  A  I  I  G  V  A  G  R  Y  L  S  E  L  A  P  P  M  L  P  S  L  R  R  R  N  S  R  T  *  F  L  R  R  L  S  R  *  N  D  R  K  G :   L  K  E  R  Y  P  S  D  W  I  R  G  R  M  K  R  I  G  T  S  L  W  D  V  V  C  Q  G  N  G  S  F  T  G  G  S  I  I  Q  M  T  L  A   : V  N  G  I  N  L  L  Q  R  C  G  R  Q  V  Q  L  P  *  R :   I  M  Q  L  K  L  L  C  K  E  T  H  F  K  R  *  R  S  T  *  V  L  S  G  L  *  Q  L  *  I  L  C  *  R :   M  R  K  L  E  F  G  I  S  T  E  G  G  T  S  R  F  L  L  L  T  A  L  T  M  M  L  I  S  L  V  L  K  R  S  R  T  Y  G  Q  :  D  H  *  E  S  C  P  T  Y  S  L  I  Q  K  L  L  L  L  K  G  N  Q  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77245" stop="77520"/>
                    <exon start="78166" stop="78296"/>
                    <exon start="78553" stop="78607"/>
                    <exon start="78760" stop="78861"/>
                    <exon start="79024" stop="79144"/>
                    <exon start="79588" stop="79661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKMSTVTMEPLVGHYLRRSPKLYPNQKKTSHFSLNFSRRPLSGTATLRFCDYRRSRTVPIRASSTDAAVIETSEQSDVVFKETFSLKRPERAEGKISIRLDKGKDEENWNLTVGCSLPGKWILHWGVHYTDDTGSEWDQPPPEMRPSGSIAIKDYAIETPLQGDTFQEVKIDISSKWSIAAINFVLKDEETGVWYQHRGRDFKIPLVDCLDNDANIVGVKKESNIWSGSLGKLSNILLNPEASPSKGESSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83111" PGL_stop="89418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83111" e_stop="83515"/>
            <exon e_start="84156" e_stop="84345"/>
            <exon e_start="85988" e_stop="86094"/>
            <exon e_start="87044" e_stop="87293"/>
            <exon e_start="87416" e_stop="87538"/>
            <exon e_start="88508" e_stop="88675"/>
            <exon e_start="88763" e_stop="89418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.856" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="83111" e_stop="83515" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83516" i_stop="84155" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84156" e_stop="84345" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84346" i_stop="85987" i_length="1642"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85988" e_stop="86094" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="86095" i_stop="87043" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87044" e_stop="87293" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87294" i_stop="87415" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87416" e_stop="87538" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="87539" i_stop="88507" i_length="969"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88508" e_stop="88675" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.828" acc_prob="0.856">
            <gDNA_intron_boundary i_start="88676" i_stop="88762" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="88763" e_stop="89418" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83111" stop="83515"/>
              <exon start="84156" stop="84345"/>
              <exon start="85988" stop="86094"/>
              <exon start="87044" stop="87137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83176" stop="83515"/>
              <exon start="84156" stop="84316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83176" stop="83513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86033" stop="86094"/>
              <exon start="87044" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="88776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86038" stop="86094"/>
              <exon start="87044" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="88776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87112" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87117" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87118" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87127" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87181" stop="87293"/>
              <exon start="87416" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87420" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87445" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87520" stop="87538"/>
              <exon start="88508" stop="88675"/>
              <exon start="88763" stop="89294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88589" stop="88675"/>
              <exon start="88763" stop="89352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88655" stop="88675"/>
              <exon start="88763" stop="89418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89023" stop="89367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89064" stop="89343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248392" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG : ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG : GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG : GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT : GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG : GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG : GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTATTTGGACAGA</gDNA_template>
            <first_frame> K  R  D  K  E  F  G  E  *  H  F  F  *  K  E  P  K  D  K  K  *  G  N  T  G  N  H  S  S  R  N  *  E  A  G  C  *  S  L  W  Y  I  Q  K  F  N  P  N  N  T  R  N  C  C  F  *  L  *  G  C  T  T  *  R  E  S  N  F  R  N  W  Y  R  I  *  N  F  V  P  G  F  *  L  G  I  S  *  I  R  K  M  V  Q  G  A  A  *  *  S  C  R  V  I  F  T  W  F  Q  C  D  L  V  T  S  T  N  *  L  S  V  T  R  G  I  H  A  *  G  F  I  *  L  K  F  Q  :  I  W  *  F  *  *  I  E  S  Y  S  K  E  I  P  *  S  G  H  Q  G  S  W  *  C  C  L  K  S  *  M  C  K  *  T  E  S  K  W  Y  M  E  Y  L  W  W  S  V  K  L  G  *  A  C  S  C  C  R  *  S  T  F  P   : G  K  G  Q  Q  K  *  W  R  *  F  P  C  C  S  *  H  *  S  F  P  G  I  R  E  K  G  Y  Q  G  M  V  T  L  A  E  :  G  G  D  W  L  *  W  M  E  A  *  F  C  S  W  V  L  G  W  L  C  E  G  L  L  G  S  N  *  T  L  L  R  C  R  R  V  L  G  F  P  R  L  Y  L  W  R  D  G  S  Q  S  R  C  A  *  A  E  N  Y  *  L  D  *  C  Y  *  W  N  C  R  S  I  *  R  D  N  E  G  N  S  S  F   : C  N  *  E  M  *  I  L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T   : G  S  L  E  I  S  W  W  E  R  D  A  R  L  C  L  Y  P  D  S  P  W  N  P  V  S  L  L  *  S  H  F  L  W  L  P  I  *  N  R  K  S  Y  I  T  Q  K  A  E  Q  D  *  L  S  E  F   : G  G  Y  H  K  S  R  K  G  C  L  R  S  S  Y  *  R  *  A  G  C  Q  N  R  T  R  P  L  R  A  S  K  W  A  S  E  M  E  N  G  C  *  G  *  Q  L  *  G  L  G  I  V  M  K  T  I  A  F  F  P  C  Y  R  Y  S  A  I  C  K  C  L  G  L  A  L  S  D  W  R  W  K  Q  *  M  S  *  K  S  C  T  A  A  D  C  I  *  L  C  C  N  T  N  *  S  C  W  S  *  N  S  K  S  M  N  S  L  V  I  I  A  V  N  I  V  V  F  G  K  I  H  H  V  H  Y  T  *  S  G  K  N  C  I  *  *  V  P  T  T  T  L  Y  C  L  F  R  R  *  I  G  I  V  E  T  V  *  C  K  E  L  L  Y  N  L  F  A  I  L  A  I  R  R  L  F  S  V  *  I  L  K  C  M  Y  C  C  I  V  F  V  L  L  Q  L  S  C  W  V  Q  L  L  N  K  S  L  Q  P  Y  L  D  R </first_frame>
            <second_frame>  K  E  I  R  S  L  V  S  D  I  S  S  E  K  S  R  K  T  K  N  R  E  T  Q  E  T  I  L  Q  E  I  E  K  L  A  A  E  A  Y  G  I  F  R  S  S  I  P  T  I  L  E  T  V  V  S  D  S  E  V  V  Q  P  D  V  K  V  T  S  G  T  G  T  G  F  E  I  L  C  Q  G  F  N  W  E  S  H  K  S  G  R  W  Y  K  E  L  H  D  K  A  A  E  L  S  S  L  G  F  S  V  I  W  L  P  P  P  T  D  S  V  S  P  E  G  Y  M  P  R  D  L  Y  N  L  N  S  R :   Y  G  S  F  D  E  L  K  V  T  V  K  K  F  H  E  V  G  I  K  V  L  G  D  V  V  L  N  H  R  C  A  S  E  R  N  Q  N  G  I  W  N  I  F  G  G  R  L  N  W  D  E  R  A  V  V  A  D  D  P  H  F  Q  :  G  R  G  N  K  S  S  G  D  N  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  K  D  I  R  E  W  L  L  W  L  R :   E  E  I  G  Y  D  G  W  R  L  D  F  V  R  G  F  W  G  G  Y  V  K  D  Y  L  E  A  T  E  P  Y  F  A  V  G  E  F  W  D  S  L  V  Y  T  Y  G  E  M  D  H  N  Q  D  A  H  R  Q  R  I  I  D  W  I  N  A  T  N  G  T  A  G  A  F  D  V  T  T  K  G  I  L  H  S  :  A  I  E  R  C  E  Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  :  G  H  W  R  F  P  G  G  K  E  M  Q  G  Y  A  Y  I  L  T  H  P  G  T  P  S  V  F  F  D  H  I  F  S  G  Y  R  S  E  I  G  N  L  I  S  L  R  K  R  N  K  I  N  C  R  S  L  :  V  D  I  T  K  A  E  R  D  V  Y  A  A  V  I  D  D  K  L  A  V  K  I  G  P  G  H  Y  E  P  P  S  G  H  Q  R  W  K  T  A  A  E  G  N  N  Y  K  V  W  E  L  S  *  K  Q  S  P  S  F  P  V  T  D  I  L  L  F  V  N  A  W  G  *  H  *  V  T  G  D  G  N  S  E  C  R  K  K  A  V  L  Q  R  I  V  S  S  F  A  A  T  Q  I  E  V  V  G  A  K  I  A  R  V  *  T  V  W  *  *  L  L  L  I  L  L  Y  L  E  K  F  T  M  Y  T  I  H  S  L  V  K  T  V  Y  D  R  Y  Q  P  L  H  Y  I  A  F  S  E  D  K  *  A  L  *  K  L  Y  D  V  K  N  F  C  T  T  Y  S  P  Y  W  R  *  D  A  F  L  A  Y  K  Y  *  N  V  C  I  A  V  L  Y  L  Y  Y  Y  N  *  V  A  G  F  S  Y  *  I  K  V  S  S  L  I  W  T   </second_frame>
            <third_frame>   K  R  *  G  V  W  *  V  T  F  L  L  K  R  A  E  R  Q  K  I  G  K  H  R  K  P  F  F  K  K  L  R  S  W  L  L  K  L  M  V  Y  S  E  V  Q  S  Q  Q  Y  *  K  L  L  F  L  T  L  R  L  Y  N  L  T  *  K  *  L  Q  E  L  V  Q  D  L  K  F  C  A  R  V  L  I  G  N  L  I  N  P  E  D  G  T  R  S  C  M  I  K  L  Q  S  Y  L  H  L  V  S  V  *  S  G  Y  L  H  Q  L  T  Q  C  H  Q  R  D  T  C  L  G  I  Y  I  T  *  I  P   : D  M  V  V  L  M  N  *  K  L  Q  *  R  N  S  M  K  W  A  S  R  F  L  V  M  L  S  *  I  I  D  V  Q  V  N  G  I  K  M  V  Y  G  I  S  L  V  V  G  *  I  G  M  S  V  Q  L  L  Q  M  I  H  I  S  R :   E  G  A  T  K  V  V  E  I  I  S  M  L  L  L  T  L  I  I  P  R  N  S  *  E  R  I  S  G  N  G  Y  S  G  *   : G  R  R  L  V  M  M  D  G  G  L  I  L  F  V  G  F  G  V  V  M  *  R  I  T  W  K  Q  L  N  L  T  S  L  *  A  S  F  G  I  P  S  F  I  L  M  E  R  W  I  T  I  K  M  R  I  G  R  E  L  L  T  G  L  M  L  L  M  E  L  Q  E  H  L  T  *  Q  R  R  E  F  F  I  L :   Q  L  R  D  V  N  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R :   V  I  G  D  F  L  V  G  K  R  C  K  V  M  P  I  S  *  L  T  L  E  P  R  Q  S  S  L  I  T  F  S  L  V  T  D  L  K  *  E  I  L  Y  H  S  E  S  G  T  R  L  T  V  G  V  W :   W  I  S  Q  K  P  K  G  M  F  T  Q  Q  L  L  T  I  S  W  L  S  K  *  D  Q  A  T  T  S  L  Q  V  G  I  R  D  G  K  R  L  L  R  V  T  I  I  R  F  G  N  C  H  E  N  N  R  L  L  S  L  L  P  I  F  C  Y  L  *  M  L  G  V  S  I  E  *  L  E  M  E  T  V  N  V  V  K  K  L  Y  C  S  G  L  Y  L  A  L  L  Q  H  K  L  K  L  L  E  L  K  *  Q  E  Y  E  Q  S  G  N  N  C  C  *  Y  C  C  I  W  K  N  S  P  C  T  L  Y  I  V  W  *  K  L  Y  M  I  G  T  N  H  Y  I  I  L  P  F  Q  K  I  N  R  H  C  R  N  C  M  M  *  R  T  S  V  Q  L  I  R  H  I  G  D  K  T  P  F  *  R  I  N  T  K  M  Y  V  L  L  Y  C  I  C  I  I  T  I  E  L  L  G  S  A  T  E  *  K  S  P  A  L  F  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83112" stop="83515"/>
                    <exon start="84156" stop="84345"/>
                    <exon start="85988" stop="86094"/>
                    <exon start="87044" stop="87293"/>
                    <exon start="87416" stop="87538"/>
                    <exon start="88508" stop="88675"/>
                    <exon start="88763" stop="88921"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEIRSLVSDISSEKSRKTKNRETQETILQEIEKLAAEAYGIFRSSIPTILETVVSDSEVVQPDVKVTSGTGTGFEILCQGFNWESHKSGRWYKELHDKAAELSSLGFSVIWLPPPTDSVSPEGYMPRDLYNLNSRYGSFDELKVTVKKFHEVGIKVLGDVVLNHRCASERNQNGIWNIFGGRLNWDERAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIREWLLWLREEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEFWDSLVYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSAIERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYILTHPGTPSVFFDHIFSGYRSEIGNLISLRKRNKINCRSLVDITKAERDVYAAVIDDKLAVKIGPGHYEPPSGHQRWKTAAEGNNYKVWELS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87434" e_stop="88090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87434" e_stop="88090" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87434" stop="88090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87434" stop="87982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</gDNA_template>
            <first_frame> Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  V  K  Y  A  L  *  L  S  E  D  *  R  S  S  S  F  N  L  D  Q  *  *  K  V  F  F  M  R  R  Q  I  V  Q  H  I  H  W  P  E  P  T  I  P  F  L  I  I  Q  L  I  Y  H  L  F  P  A  *  V  W  L  D  C  S  S  V  R  A  K  C  T  L  N  P  G  S  C  L  *  M  L  F  T  V  R  Y  H  D  E  M  *  T  L  *  L  L  Y  *  L  *  C  I  A  V  T  T  I  R  K  N  S  S  P  W  K  S  V  K  K  Q  N  P  S  P  A  *  S  S  T  L  I  L  F  G  F  F  A  L  D  V  P  *  F  A  C  Q  Y  L  N  W  Q  K  F  *  Q  T  Q  G  C  K  I  L  Q  R  I  Y  F  F  G  T  E  R  L  S  *  V  P  F  G  L  N  L  K  S  M </first_frame>
            <second_frame>  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R  *  N  M  L  F  S  Y  Q  R  T  R  E  A  P  L  L  I  L  I  N  D  K  R  F  F  L  *  G  G  R  *  F  S  I  S  T  G  R  N  Q  L  Y  L  S  *  S  F  N  *  F  T  T  F  F  L  L  K  C  G  W  I  A  Q  A  *  E  L  N  V  L  *  I  L  A  A  A  Y  K  C  Y  L  Q  L  D  I  M  M  K  C  K  P  C  S  F  S  I  D  S  S  A  *  L  *  P  P  L  G  R  I  V  P  L  G  N  Q  L  R  N  K  I  L  V  Q  P  S  H  Q  L  *  F  C  L  V  S  L  L  L  M  F  H  N  L  L  V  N  I  *  I  G  K  S  S  S  K  H  K  A  V  K  F  F  S  V  F  I  F  L  V  Q  N  V  S  L  R  F  H  L  D  S  T  *  N  Q   </second_frame>
            <third_frame>   L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T  G  K  I  C  S  L  V  I  R  G  L  E  K  L  L  F  *  S  *  S  M  I  K  G  F  F  Y  E  E  A  D  S  S  A  Y  P  L  A  G  T  N  Y  T  F  L  D  H  S  I  N  L  P  P  F  S  C  L  S  V  V  G  L  L  K  R  E  S  *  M  Y  F  E  S  W  Q  L  P  I  N  A  I  Y  S  *  I  S  *  *  N  V  N  P  V  A  S  L  L  T  L  V  H  S  C  D  H  H  *  E  E  *  F  P  L  E  I  S  *  E  T  K  S  *  S  S  L  V  I  N  F  D  F  V  W  F  L  C  S  *  C  S  I  I  C  L  S  I  S  K  L  A  K  V  L  A  N  T  R  L  *  N  S  S  A  Y  L  F  F  W  Y  R  T  S  L  L  G  S  I  W  T  Q  L  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0060G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="89188" PGL_stop="88858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89188" e_stop="88858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="89188" e_stop="88858" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89188" stop="88858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACAGTTTTTACCAGACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</gDNA_template>
            <first_frame> I  Y  S  F  Y  Q  T  M  Y  S  V  H  G  E  F  F  Q  I  Q  Q  Y  *  Q  Q  L  L  P  D  C  S  Y  S  C  Y  F  S  S  N  N  F  N  L  C  C  S  K  A  R  Y  N  P  L  Q  Y  S  F  F  T  T  F  T  V  S  I  S  S  H  S  M  L  T  P  S  I  Y  K  *  Q  N  I  G  N  R  E  R  R  R  L  F  S  *  Q  F  P  N  L  I  I  V  T  L  S  S  R  F  P  S  L  M  P  </first_frame>
            <second_frame>  Y  T  V  F  T  R  L  C  I  V  Y  M  V  N  F  S  K  Y  N  N  I  N  S  N  Y  Y  Q  T  V  H  T  L  A  I  L  A  P  T  T  S  I  C  V  A  A  K  L  D  T  I  R  C  S  T  A  F  L  R  H  S  L  F  P  S  P  V  T  Q  C  *  P  Q  A  F  T  N  S  R  I  S  V  T  G  K  E  G  D  C  F  H  D  N  S  Q  T  L  *  L  L  P  S  A  A  V  F  H  L  *  C  P </second_frame>
            <third_frame>   I  Q  F  L  P  D  Y  V  *  C  T  W  *  I  F  P  N  T  T  I  L  T  A  I  I  T  R  L  F  I  L  L  L  F  *  L  Q  Q  L  Q  F  V  L  Q  Q  S  *  I  Q  S  A  A  V  Q  L  F  Y  D  I  H  C  F  H  L  Q  S  L  N  A  N  P  K  H  L  Q  I  A  E  Y  R  *  Q  G  K  K  A  I  V  F  M  T  I  P  K  P  Y  N  C  Y  P  Q  Q  P  F  S  I  S  D  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89187" stop="88978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTVFTRLCIVYMVNFSKYNNINSNYYQTVHTLAILAPTTSICVAAKLDTIRCSTAFLRHSLFPSPVTQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90070" PGL_stop="91242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90070" e_stop="90400"/>
            <exon e_start="90994" e_stop="91242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.915"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="90070" e_stop="90400" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="90401" i_stop="90993" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="90994" e_stop="91242" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90070" stop="90400"/>
              <exon start="90994" stop="91072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90070" stop="90400"/>
              <exon start="90994" stop="91071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90074" stop="90400"/>
              <exon start="90994" stop="91052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90089" stop="90400"/>
              <exon start="90994" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90089" stop="90400"/>
              <exon start="90994" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACAAAAAAAAGGAGAAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA : AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</gDNA_template>
            <first_frame> L  I  K  S  K  T  T  K  S  W  V  F  P  P  K  A  A  G  G  S  R  K  K  K  D  K  Q  K  Q  K  K  G  E  K  K  N  I  C  Y  K  K  K  W  P  L  L  V  L  I  I  Q  L  F  F  C  F  P  F  S  V  F  L  L  *  S  Q  N  Y  M  L  I  L  L  I  L  I  L  I  W  K  K  E  L  K  K  P  S  N  L  L  L  L  L  I  M  K  I  L  R  V  S  L  K  F  S  T  K  K  L  E   : K  H  F  S  M  A  Q  G  G  I  *  R  K  K  I  K  R  T  R  M  T  R  M  I  R  K  V  M  K  K  V  L  M  V  A  R  H  T  I  Q  L  T  N  V  G  D  V  T  K  T  G  L  I  T  G  R  H  *  Q  T  V  L  G  D  L  V  M  V  Q  L  V  V  K  M  V  D  S  M  L  S  P  I  H  </first_frame>
            <second_frame>  *  *  N  Q  K  L  P  N  L  G  F  F  P  P  R  L  Q  V  V  A  E  K  K  K  T  N  K  N  K  K  K  E  K  K  K  I  S  A  T  K  K  N  G  L  Y  *  F  *  *  F  S  Y  F  S  V  F  P  F  L  F  F  F  Y  N  P  K  I  I  C  *  Y  C  *  F  *  S  L  F  G  K  K  S  *  R  S  P  P  I  F  S  C  C  L  *  *  K  S  *  G  C  H  S  N  F  Q  Q  R  S  W  R  :  N  T  S  Q  W  H  K  E  A  F  E  G  K  R  *  R  G  Q  E  *  Q  G  *  *  G  R  *  *  K  K  C  *  W  L  Q  G  I  Q  S  N  *  Q  M  L  E  M  *  Q  K  L  G  *  *  Q  E  G  T  S  R  L  C  *  G  I  W  S  W  Y  N  W  W  *  R  W  *  I  L  C  C  H  R  S  I </second_frame>
            <third_frame>   N  K  I  K  N  Y  Q  I  L  G  F  S  P  Q  G  C  R  W  *  Q  K  K  K  R  Q  T  K  T  K  K  R  R  K  K  K  Y  L  L  Q  K  K  M  A  S  I  S  F  N  N  S  V  I  F  L  F  S  L  F  C  F  S  S  I  I  P  K  L  Y  A  N  I  A  D  F  D  P  Y  L  E  K  R  A  E  E  A  L  Q  S  S  L  A  A  Y  N  E  N  P  E  G  V  T  Q  I  F  N  K  E  V  G  E :   T  L  L  N  G  T  R  R  H  L  K  E  K  D  K  E  D  K  N  D  K  D  D  K  E  G  D  E  K  S  V  D  G  C  K  A  Y  N  P  I  D  K  C  W  R  C  D  K  N  W  A  N  N  R  K  A  L  A  D  C  A  R  G  F  G  H  G  T  T  G  G  K  D  G  R  F  Y  V  V  T  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90129" stop="90400"/>
                    <exon start="90994" stop="91240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRQTKTKKRRKKKYLLQKKMASISFNNSVIFLFSLFCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPEGVTQIFNKEVGETLLNGTRRHLKEKDKEDKNDKDDKEGDEKSVDGCKAYNPIDKCWRCDKNWANNRKALADCARGFGHGTTGGKDGRFYVVTDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90070" e_stop="90582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="90070" e_stop="90582" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90070" stop="90582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACAAAAAAAAGGAGAAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGA</gDNA_template>
            <first_frame> L  I  K  S  K  T  T  K  S  W  V  F  P  P  K  A  A  G  G  S  R  K  K  K  D  K  Q  K  Q  K  K  G  E  K  K  N  I  C  Y  K  K  K  W  P  L  L  V  L  I  I  Q  L  F  F  C  F  P  F  S  V  F  L  L  *  S  Q  N  Y  M  L  I  L  L  I  L  I  L  I  W  K  K  E  L  K  K  P  S  N  L  L  L  L  L  I  M  K  I  L  R  V  S  L  K  F  S  T  K  K  L  E  S  K  C  F  *  D  I  E  I  M  Y  V  C  I  F  F  E  T  R  G  *  N  I  V  *  K  *  I  F  L  S  C  Q  S  *  K  T  S  *  *  G  E  D  C  R  Y  H  N  A  *  S  I  Y  S  D  Y  V  G  T  F  * </first_frame>
            <second_frame>  *  *  N  Q  K  L  P  N  L  G  F  F  P  P  R  L  Q  V  V  A  E  K  K  K  T  N  K  N  K  K  K  E  K  K  K  I  S  A  T  K  K  N  G  L  Y  *  F  *  *  F  S  Y  F  S  V  F  P  F  L  F  F  F  Y  N  P  K  I  I  C  *  Y  C  *  F  *  S  L  F  G  K  K  S  *  R  S  P  P  I  F  S  C  C  L  *  *  K  S  *  G  C  H  S  N  F  Q  Q  R  S  W  R  V  S  V  F  K  I  S  K  S  C  M  Y  V  S  F  S  R  H  E  V  R  I  L  Y  R  N  E  S  F  C  L  V  N  L  E  K  L  A  D  K  E  R  I  V  D  I  T  M  H  K  V  Y  I  P  I  M  *  G  H  F   </second_frame>
            <third_frame>   N  K  I  K  N  Y  Q  I  L  G  F  S  P  Q  G  C  R  W  *  Q  K  K  K  R  Q  T  K  T  K  K  R  R  K  K  K  Y  L  L  Q  K  K  M  A  S  I  S  F  N  N  S  V  I  F  L  F  S  L  F  C  F  S  S  I  I  P  K  L  Y  A  N  I  A  D  F  D  P  Y  L  E  K  R  A  E  E  A  L  Q  S  S  L  A  A  Y  N  E  N  P  E  G  V  T  Q  I  F  N  K  E  V  G  E  *  V  F  L  R  Y  R  N  H  V  C  M  Y  L  F  R  D  T  R  L  E  Y  C  I  E  M  N  L  F  V  L  S  I  L  K  N  *  L  I  R  R  G  L  S  I  S  Q  C  I  K  Y  I  F  R  L  C  R  D  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90129" stop="90404"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRQTKTKKRRKKKYLLQKKMASISFNNSVIFLFSLFCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPEGVTQIFNKEVGE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90365" stop="90571"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCHSNFQQRSWRVSVFKISKSCMYVSFSRHEVRILYRNESFCLVNLEKLADKERIVDITMHKVYIPIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91304" PGL_stop="93041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91304" e_stop="91690"/>
            <exon e_start="91792" e_stop="92034"/>
            <exon e_start="92479" e_stop="93041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.542" e_score="0.988"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91304" e_stop="91690" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="91691" i_stop="91791" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="91792" e_stop="92034" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="92035" i_stop="92478" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="92479" e_stop="93041" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91304" stop="91690"/>
              <exon start="91792" stop="91855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91499" stop="91690"/>
              <exon start="91792" stop="92034"/>
              <exon start="92479" stop="92761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="91690"/>
              <exon start="91792" stop="92034"/>
              <exon start="92479" stop="92808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="91690"/>
              <exon start="91792" stop="92027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91832" stop="92034"/>
              <exon start="92479" stop="93041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92831" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC : GTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG : GTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCATTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTCTCTGGAGCTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCTAATAAATGTAATTTTCCCTGTTTGAATTTCA</gDNA_template>
            <first_frame> P  L  W  I  I  F  E  K  S  M  I  I  R  L  K  Q  E  L  M  I  N  S  N  K  T  I  D  G  R  G  V  S  V  H  V  A  Y  G  G  G  L  T  L  Q  F  V  H  N  V  I  V  H  N  I  R  V  H  H  I  L  S  K  N  G  G  M  I  R  D  S  V  K  H  I  G  L  R  T  V  S  D  G  D  A  I  S  L  F  G  A  N  R  I  W  I  D  H  C  T  L  T  K  G  A  D  G  L  L  D  A  I  M  A  S  T  A  I  T  I  S  N  C  K  F  N  H  H  N  D  :  V  M  L  L  G  A  N  D  A  F  P  Q  D  K  I  M  Q  V  T  V  A  F  N  R  F  G  K  G  C  I  Q  R  M  P  R  C  R  W  G  F  F  H  V  V  N  N  D  Y  A  K  W  E  M  Y  A  I  G  G  T  A  N  P  T  I  I  S  Q  G  N  R  F  K  A  A  D  N  P  N  T  K  E  :  V  T  N  R  N  G  A  P  E  A  L  W  R  N  W  Q  W  R  S  E  G  D  L  F  K  N  G  A  F  F  R  E  S  G  P  E  I  K  S  T  P  F  T  E  H  T  T  I  Q  F  E  P  A  K  F  V  G  R  L  T  R  K  A  G  V  I  Q  C  K  I  G  K  A  C  *  A  C  Y  M  Y  N  V  I  L  I  I  I  H  K  T  Y  C  T  F  H  F  G  V  Y  M  E  P  N  I  F  F  L  G  G  F  F  Y  S  K  R  R  R  K  R  L  R  H  L  S  V  F  S  V  F  F  R  L  L  L  S  F  F  F  L  A  G  L  L  Y  R  *  S  S  E  D  G  E  E  N  E  K  S  G  F  S  G  A  Q  V  Y  L  F  V  T  E  V  L  V  F  T  I  F  *  *  M  *  F  S  L  F  E  F   </first_frame>
            <second_frame>  H  C  G  S  S  S  R  S  R  *  S  S  G  *  N  K  N  L  *  S  T  V  I  R  Q  L  M  A  E  V  C  L  F  M  L  H  M  E  V  D  L  P  Y  N  L  C  T  M  *  L  S  T  T  L  E  F  I  T  S  F  L  R  M  V  V  *  L  E  I  L  L  N  I  L  V  L  G  Q  *  V  M  V  M  L  F  P  F  S  V  L  T  V  S  G  *  I  I  V  L  *  P  R  V  L  M  D  S  S  M  Q  S  W  L  P  L  L  S  P  F  L  T  A  N  S  T  I  T  T  T :   L  C  F  W  E  Q  T  M  P  S  H  K  I  K  S  C  K  L  Q  L  H  S  I  G  S  E  R  D  V  F  K  G  C  Q  G  A  G  G  D  S  S  T  L  S  T  T  T  T  P  N  G  K  C  M  L  L  V  A  Q  L  T  P  P  S  L  A  R  V  T  V  S  R  L  P  T  I  P  T  L  K  R :   *  Q  T  G  M  V  P  Q  K  L  C  G  E  T  G  N  G  D  P  R  V  I  C  S  R  T  E  P  S  L  G  S  L  D  Q  K  S  R  A  L  H  S  Q  N  I  P  Q  S  N  L  S  L  L  N  L  *  V  D  S  L  A  R  L  V  *  S  S  A  R  L  E  K  H  A  R  H  V  I  C  T  M  *  Y  *  L  *  Y  I  K  H  I  V  H  F  I  L  G  F  T  W  S  R  I  F  F  F  W  G  G  S  F  T  A  R  E  E  E  N  G  *  D  I  Y  L  F  S  Q  F  F  S  D  Y  C  F  L  S  S  S  *  L  V  Y  S  I  G  E  A  V  K  M  G  K  K  T  K  K  V  G  S  L  E  L  K  F  I  F  L  *  Q  K  F  W  F  L  R  F  S  N  K  C  N  F  P  C  L  N  F  </second_frame>
            <third_frame>   I  V  D  H  L  R  E  V  D  D  H  Q  V  E  T  R  T  Y  D  Q  Q  *  *  D  N  *  W  Q  R  C  V  C  S  C  C  I  W  R  W  T  Y  L  T  I  C  A  Q  C  D  C  P  Q  H  *  S  S  S  H  P  F  *  E  W  W  Y  D  *  R  F  C  *  T  Y  W  S  *  D  S  E  *  W  *  C  Y  F  P  F  R  C  *  P  Y  L  D  R  S  L  Y  F  N  Q  G  C  *  W  T  P  R  C  N  H  G  F  H  C  Y  H  H  F  *  L  Q  I  Q  P  S  Q  R   : R  Y  A  F  G  S  K  R  C  L  P  T  R  *  N  H  A  S  Y  S  C  I  Q  *  V  R  K  G  M  Y  S  K  D  A  K  V  Q  V  G  I  L  P  R  C  Q  Q  R  L  R  Q  M  G  N  V  C  Y  W  W  H  S  *  P  H  H  H  *  P  G  *  P  F  Q  G  C  R  Q  S  Q  H  *  R   : G  D  K  P  E  W  C  P  R  S  F  V  E  K  L  A  M  E  I  R  G  *  F  V  Q  E  R  S  L  L  *  G  V  W  T  R  N  Q  E  H  S  I  H  R  T  Y  H  N  P  I  *  A  C  *  I  C  R  *  T  H  S  Q  G  W  C  N  P  V  Q  D  W  K  S  M  L  G  M  L  Y  V  Q  C  N  I  N  Y  N  T  *  N  I  L  Y  I  S  F  W  G  L  H  G  A  E  Y  F  F  F  G  G  V  L  L  Q  Q  E  K  K  K  T  A  K  T  S  I  C  F  L  S  F  F  P  T  I  A  F  F  L  L  P  S  W  F  T  L  *  V  K  Q  *  R  W  G  R  K  R  K  K  W  V  L  W  S  S  S  L  S  F  C  N  R  S  F  G  F  Y  D  F  L  I  N  V  I  F  P  V  *  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91304" stop="91690"/>
                    <exon start="91792" stop="92034"/>
                    <exon start="92479" stop="92703"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLWIIFEKSMIIRLKQELMINSNKTIDGRGVSVHVAYGGGLTLQFVHNVIVHNIRVHHILSKNGGMIRDSVKHIGLRTVSDGDAISLFGANRIWIDHCTLTKGADGLLDAIMASTAITISNCKFNHHNDVMLLGANDAFPQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAIGGTANPTIISQGNRFKAADNPNTKEVTNRNGAPEALWRNWQWRSEGDLFKNGAFFRESGPEIKSTPFTEHTTIQFEPAKFVGRLTRKAGVIQCKIGKAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92704" stop="92916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACYMYNVILIIIHKTYCTFHFGVYMEPNIFFLGGFFYSKRRRKRLRHLSVFSVFFRLLLSFFFLAGLLYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97103" PGL_stop="93268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97103" e_stop="96862"/>
            <exon e_start="96465" e_stop="96410"/>
            <exon e_start="95605" e_stop="95443"/>
            <exon e_start="95327" e_stop="95239"/>
            <exon e_start="94909" e_stop="94777"/>
            <exon e_start="94604" e_stop="94498"/>
            <exon e_start="94405" e_stop="94303"/>
            <exon e_start="93858" e_stop="93268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.888" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97103" e_stop="96862" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="96861" i_stop="96466" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96465" e_stop="96410" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.814">
            <gDNA_intron_boundary i_start="96409" i_stop="95606" i_length="804"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95605" e_stop="95443" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.740">
            <gDNA_intron_boundary i_start="95442" i_stop="95328" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95327" e_stop="95239" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95238" i_stop="94910" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="94909" e_stop="94777" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.888">
            <gDNA_intron_boundary i_start="94776" i_stop="94605" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94604" e_stop="94498" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.712">
            <gDNA_intron_boundary i_start="94497" i_stop="94406" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94405" e_stop="94303" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94302" i_stop="93859" i_length="444"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="93858" e_stop="93268" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97103" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95443"/>
              <exon start="95327" stop="95239"/>
              <exon start="94909" stop="94777"/>
              <exon start="94604" stop="94529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97096" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95443"/>
              <exon start="95327" stop="95239"/>
              <exon start="94909" stop="94852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97095" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95443"/>
              <exon start="95327" stop="95239"/>
              <exon start="94909" stop="94818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97094" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95443"/>
              <exon start="95327" stop="95239"/>
              <exon start="94909" stop="94777"/>
              <exon start="94604" stop="94580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97094" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95443"/>
              <exon start="95327" stop="95239"/>
              <exon start="94909" stop="94811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97094" stop="96862"/>
              <exon start="96465" stop="96410"/>
              <exon start="95605" stop="95482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94537" stop="94498"/>
              <exon start="94405" stop="94303"/>
              <exon start="93858" stop="93268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93831" stop="93268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93593" stop="93269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG : GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG : GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG : GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG : TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA : TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG : AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG : GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</gDNA_template>
            <first_frame> K  N  I  K  K  K  I  K  S  P  F  *  V  T  S  S  I  *  R  N  S  H  V  Q  C  Q  Q  Q  Y  G  H  Q  C  C  L  N  G  D  I  V  T  R  I  C  I  I  G  Y  Y  H  L  Q  K  L  N  L  A  S  F  I  Y  L  F  Y  L  L  S  L  I  I  M  I  L  Y  H  P  S  N  K  I  R :   L  C  M  T  L  Q  R  S  F  L  D  L  M  L  I  C  S  Q   : G  R  S  F  L  V  H  R  V  R  D  H  G  L  A  Q  M  D  S  I  *  E  N  C  L  V  Q  A  A  E  E  E  A  T  L  H  V  L  N  V  E  S  R  D  P  T  *  I  V  R  C  V  M  E  R :   V  *  *  L  V  I  S  V  V  E  I  V  S  F  G  K  S  L  S  M  N  G  L  G  R  K  L  D  Q   : V  H  L  *  K  *  K  K  T  M  K  W  T  T  *  T  *  S  L  T  R  R  E  K  P  S  V  S  T  N  L  P  T  Q  K  S  I  *  R  S  A  D  H  *  N :   W  M  I  A  E  P  K  C  Q  N  W  I  I  *  *  K  D  E  D  Y  P  W  R  S  D  A  S  C  T  K  S  S  C  Y  *   : E  S  K  G  D  T  C  R  *  E  T  C  L  R  I  H  E  K  L  L  P  *  S  R  *  P  P  Q  E  K  H  I  H  E  R :   G  E  I  L  L  *  K  L  W  T  G  R  T  *  E  *  L  L  S  R  N  S  R  Q  Y  G  *  T  L  *  M  W  I  M  W  N  K  G  S  *  Q  K  N  L  L  K  V  E  L  N  C  T  E  K  D  S  *  G  *  S  S  L  Q  Q  V  S  K  K  W  P  *  Q  K  N  M  P  P  K  E  *  I  R  H  *  S  G  C  N  N  Q  D  S  S  K  E  N  L  *  L  Q  R  V  L  R  K  R  T  Q  R  Q  D  M  S  S  *  K  Q  L  Q  K  Q  I  V  I  C  K  E  I  P  *  C  F  D  F  V  F  I  S  R  L  M  H  Y  S  G  F  S  S  S  V  L  V  H  V  I  D  L  P  F  N  S  D  I  S  S  F  *  M  F  V  R  L  K  T  L  D  Q  F  A  L  R  L  W  K  N  L  S  *  I  *  N  C  Y  K  Y  H   </first_frame>
            <second_frame>  K  T  S  K  R  K  *  N  L  H  F  K  S  L  L  Q  F  E  E  I  L  M  Y  N  V  N  N  N  M  V  I  N  V  A  S  M  E  I  L  *  Q  E  F  A  L  L  D  I  T  T  F  K  N  *  T  *  L  L  L  F  T  Y  F  I  F  F  H  *  *  *  *  F  C  I  T  H  Q  T  K  S   : G  Y  V  *  P  F  R  G  A  F  W  T  *  C  *  F  A  A  K  :  E  G  H  F  *  F  I  E  S  E  I  M  V  W  P  K  W  T  V  Y  K  R  T  A  L  S  K  L  Q  R  K  R  L  H  F  M  Y  *  M  W  N  R  E  I  Q  L  R  L  F  V  V  *  W  K   : G  Y  D  N  L  S  S  V  W  W  R  L  C  H  L  G  R  V  Y  R  *  T  A  L  G  E  S  S  I  K  :  F  T  F  K  S  K  R  R  R  *  S  G  R  L  R  H  K  A  *  R  E  E  K  N  Q  A  C  L  P  I  S  Q  H  R  S  Q  F  E  D  Q  Q  I  T  K   : I  G  *  L  Q  S  L  N  A  K  T  G  L  F  S  K  R  M  K  I  I  H  G  D  P  M  L  H  A  Q  R  V  A  A  I  K  :  K  A  K  G  T  P  A  A  R  K  R  A  S  E  S  M  K  S  Y  F  R  D  P  D  N  R  R  K  R  S  I  S  M  K   : G  V  K  F  Y  C  R  N  C  G  Q  E  G  H  R  S  N  Y  C  P  E  I  R  D  N  T  D  R  H  Y  R  C  G  L  C  G  T  K  G  H  N  R  R  T  C  L  K  L  S  L  I  V  P  K  K  T  V  K  V  N  H  H  C  S  K  C  Q  R  S  G  H  N  R  R  T  C  H  Q  K  N  E  F  D  T  K  V  V  A  T  I  K  T  R  V  K  R  T  Y  S  C  S  V  C  L  G  K  G  H  N  A  R  T  C  L  H  K  S  N  S  K  S  R  *  L  F  V  R  K  S  L  D  V  S  T  L  F  S  Y  L  V  *  C  I  I  L  V  F  P  L  L  C  L  Y  M  *  S  I  S  H  S  I  L  I  F  L  R  F  K  C  L  F  D  *  K  L  W  I  N  L  L  *  G  C  G  K  I  C  L  E  Y  K  T  V  I  N  I  I  </second_frame>
            <third_frame>   K  H  Q  K  E  N  K  I  S  I  L  S  H  F  F  N  L  K  K  F  S  C  T  M  S  T  T  I  W  S  S  M  L  P  Q  W  R  Y  C  N  K  N  L  H  Y  W  I  L  P  P  S  K  T  K  L  S  F  F  Y  L  P  I  L  S  S  F  T  N  N  N  D  S  V  S  P  I  K  Q  N  Q  :  A  M  Y  D  P  S  E  E  L  F  G  L  D  A  D  L  Q  P  R :   K  V  I  S  S  S  S  S  P  R  S  W  F  G  P  N  G  Q  Y  I  R  E  L  P  C  P  S  C  R  G  R  G  Y  T  S  C  T  E  C  G  I  E  R  S  N  L  D  C  S  L  C  N  G  K  :  G  M  I  T  C  H  Q  C  G  G  D  C  V  I  W  E  E  S  I  D  E  R  P  W  E  K  A  R  S  S :   S  P  L  K  V  K  E  D  D  E  V  D  D  L  D  I  K  L  D  A  K  R  K  T  K  R  V  Y  Q  S  P  N  T  E  V  N  L  K  I  S  R  S  L  K  :  L  D  D  C  R  A  *  M  P  K  L  D  Y  L  V  K  G  *  R  L  S  M  A  I  R  C  F  M  H  K  E  *  L  L  L  R :   K  Q  R  G  H  L  P  L  G  N  V  P  Q  N  P  *  K  V  T  S  V  I  Q  I  T  A  A  R  E  A  Y  P  *  K  :  G  *  N  F  T  V  E  I  V  D  R  K  D  I  G  V  T  T  V  Q  K  F  E  T  I  R  I  D  I  I  D  V  D  Y  V  E  Q  R  V  I  T  E  E  L  A  *  S  *  A  *  L  Y  R  K  R  Q  L  R  L  I  I  I  A  A  S  V  K  E  V  A  I  T  E  E  H  A  T  K  R  M  N  S  T  L  K  W  L  Q  Q  S  R  L  E  *  R  E  L  I  A  A  A  C  A  *  E  K  D  T  T  P  G  H  V  F  I  K  A  T  P  K  A  D  S  Y  L  *  G  N  P  L  M  F  R  L  C  F  H  I  S  F  N  A  L  F  W  F  F  L  F  C  A  C  T  C  D  R  S  P  I  Q  F  *  Y  F  F  V  L  N  V  C  S  I  E  N  S  G  S  I  C  S  K  V  V  E  K  S  V  L  N  I  K  L  L  *  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97101" stop="96862"/>
                    <exon start="96465" stop="96410"/>
                    <exon start="95605" stop="95443"/>
                    <exon start="95327" stop="95239"/>
                    <exon start="94909" stop="94777"/>
                    <exon start="94604" stop="94584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHQKENKISILSHFFNLKKFSCTMSTTIWSSMLPQWRYCNKNLHYWILPPSKTKLSFFYLPILSSFTNNNDSVSPIKQNQAMYDPSEELFGLDADLQPRKVISSSSSPRSWFGPNGQYIRELPCPSCRGRGYTSCTECGIERSNLDCSLCNGKGMITCHQCGGDCVIWEESIDERPWEKARSSSPLKVKEDDEVDDLDIKLDAKRKTKRVYQSPNTEVNLKISRSLKLDDCRA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94596" stop="94498"/>
                    <exon start="94405" stop="94303"/>
                    <exon start="93858" stop="93491"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQSLNAKTGLFSKRMKIIHGDPMLHAQRVAAIKKAKGTPAARKRASESMKSYFRDPDNRRKRSISMKGVKFYCRNCGQEGHRSNYCPEIRDNTDRHYRCGLCGTKGHNRRTCLKLSLIVPKKTVKVNHHCSKCQRSGHNRRTCHQKNEFDTKVVATIKTRVKRTYSCSVCLGKGHNARTCLHKSNSKSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="97757" PGL_stop="101263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97757" e_stop="98138"/>
            <exon e_start="99118" e_stop="99215"/>
            <exon e_start="99324" e_stop="99416"/>
            <exon e_start="99646" e_stop="99740"/>
            <exon e_start="99963" e_stop="100036"/>
            <exon e_start="100135" e_stop="100223"/>
            <exon e_start="100868" e_stop="101263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97757" e_stop="98138" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="98139" i_stop="99117" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99118" e_stop="99215" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.822">
            <gDNA_intron_boundary i_start="99216" i_stop="99323" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99324" e_stop="99416" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="99417" i_stop="99645" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99646" e_stop="99740" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99741" i_stop="99962" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99963" e_stop="100036" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.984">
            <gDNA_intron_boundary i_start="100037" i_stop="100134" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100135" e_stop="100223" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.898">
            <gDNA_intron_boundary i_start="100224" i_stop="100867" i_length="644"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="100868" e_stop="101263" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97757" stop="98138"/>
              <exon start="99118" stop="99215"/>
              <exon start="99324" stop="99416"/>
              <exon start="99646" stop="99740"/>
              <exon start="99963" stop="99995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97757" stop="98138"/>
              <exon start="99118" stop="99215"/>
              <exon start="99324" stop="99416"/>
              <exon start="99646" stop="99665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97757" stop="98138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97757" stop="98073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="98138"/>
              <exon start="99118" stop="99215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97767" stop="98138"/>
              <exon start="99118" stop="99215"/>
              <exon start="99324" stop="99402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99192" stop="99215"/>
              <exon start="99324" stop="99416"/>
              <exon start="99646" stop="99740"/>
              <exon start="99963" stop="100036"/>
              <exon start="100135" stop="100223"/>
              <exon start="100868" stop="100887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99664" stop="99740"/>
              <exon start="99963" stop="100036"/>
              <exon start="100135" stop="100223"/>
              <exon start="100868" stop="101263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100170" stop="100223"/>
              <exon start="100868" stop="101253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100170" stop="100223"/>
              <exon start="100868" stop="101253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG : GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT : TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG : GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG : TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA : GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT : TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</gDNA_template>
            <first_frame> K  I  C  A  Y  T  L  L  *  *  S  L  L  Q  E  G  V  F  P  N  S  T  F  D  S  C  F  S  K  I  L  V  K  R  L  N  L  C  Y  P  F  C  L  K  S  L  V  A  M  S  V  F  S  L  S  A  S  P  A  S  G  F  S  L  N  P  T  K  T  S  S  Y  L  S  F  S  S  S  I  N  T  I  F  A  P  L  T  S  N  T  T  K  S  F  S  G  L  T  Y  K  A  A  L  P  R  N  L  S  L  T  C  R  H  S  D  Y  F  E  P  Q  Q  Q  Q  Q  Q  L  Q   : G  A  S  T  P  K  V  F  V  G  Y  S  I  Y  K  G  K  A  A  L  T  V  E  P  R  S  P  E  F  S  P  L  D  :  S  G  A  F  K  L  S  K  E  G  M  V  M  L  Q  F  A  P  A  A  G  V  R  Q  Y  D  W  S  R  K  Q  :  V  F  S  L  S  V  T  E  I  G  S  I  I  S  L  G  A  K  D  S  C  E  F  F  H  D  P  N  K  G  R  S :   D  E  G  R  V  R  K  V  L  K  V  E  P  L  P  D  G  S  G  H  F  F  N  L   : S  V  Q  N  K  L  I  N  L  D  E  N  I  Y  I  P  V  T  K  A  E  F  A  V  L  V  S  A  F  N  :  F  V  M  P  Y  L  L  G  W  H  T  A  V  N  S  F  K  P  E  D  A  S  R  S  N  N  T  N  P  R  S  G  A  E  L  E  W  N  R  *  F  W  *  R  Y  E  H  V  A  C  T  T  I  A  G  A  I  C  S  F  I  P  W  I  D  I  L  Y  E  P  S  F  T  C  T  L  Q  *  V  L  I  D  D  S  S  I  N  S  L  L  V  M  L  I  Y  C  K  L  C  F  I  V  *  Q  *  K  L  I  N  *  L  S  *  F  L  L  N  V  K  S  S  L  V  F  V  K  C  I  W  L  F  I </first_frame>
            <second_frame>  K  F  V  L  I  H  Y  S  N  R  A  C  S  K  K  G  S  F  Q  I  P  L  L  I  L  V  L  A  K  F  L  *  K  D  *  I  F  V  T  P  F  A  *  N  L  L  *  P  C  L  S  S  L  F  L  L  P  L  L  Q  V  L  V  *  T  L  L  K  P  L  L  I  S  L  F  P  L  P  L  I  P  F  L  L  L  *  L  P  T  Q  Q  K  A  F  L  V  *  P  I  K  Q  L  C  L  E  I  F  L  *  H  V  A  I  L  I  I  L  N  P  N  S  N  S  S  S  Y  R  :  G  H  L  R  L  R  F  L  L  D  T  Q  Y  T  K  G  R  Q  L  S  L  W  S  L  G  H  Q  S  S  H  L  *  I :   Q  G  P  S  S  C  Q  K  R  V  W  *  C  F  N  L  H  P  L  L  V  F  V  N  M  I  G  V  E  S  R :   S  S  R  C  Q  *  L  K  L  D  L  S  S  A  L  G  Q  K  I  H  V  S  F  S  M  I  Q  T  K  E  E   : V  M  K  V  E  S  G  K  C  *  R  L  S  H  F  Q  M  A  P  V  T  S  L  I  S  :  V  F  R  T  S  L  L  I  W  T  R  T  F  T  S  Q  L  Q  R  Q  S  S  Q  F  L  S  P  H  S  I :   L  L  C  H  T  F  *  V  G  T  L  L  *  I  P  S  S  L  K  T  P  V  A  Q  T  I  L  I  Q  D  Q  V  L  N  L  N  G  I  D  S  S  G  E  G  M  S  T  L  P  V  L  R  L  Q  G  Q  Y  V  P  S  S  P  G  S  T  F  C  M  N  P  H  S  L  A  P  S  N  E  F  *  S  T  I  V  V  L  T  L  F  L  *  C  *  F  T  V  S  C  V  L  L  C  S  S  R  N  S  L  T  D  Y  P  D  S  C  *  M  *  N  P  V  *  F  L  L  N  V  F  G  S  L   </second_frame>
            <third_frame>   N  L  C  L  Y  T  T  L  I  E  L  A  P  R  R  G  L  S  K  F  H  F  *  F  L  F  *  Q  N  S  C  K  K  I  E  S  L  L  P  L  L  P  K  I  S  C  S  H  V  C  L  L  S  F  C  F  P  C  F  R  F  *  S  K  P  Y  *  N  L  F  L  S  L  F  F  L  F  H  *  Y  H  F  C  S  F  N  F  Q  H  N  K  K  L  F  W  F  D  L  *  S  S  F  A  *  K  S  F  F  N  M  S  P  F  *  L  F  *  T  P  T  A  T  A  A  A  T  G :   G  I  Y  A  *  G  F  C  W  I  L  N  I  Q  R  E  G  S  S  H  C  G  A  S  V  T  R  V  L  T  F  R   : F  R  G  L  Q  A  V  K  R  G  Y  G  D  A  S  I  C  T  R  C  W  C  S  S  I  *  L  E  *  K  A   : G  L  L  A  V  S  D  *  N  W  I  Y  H  Q  P  W  G  K  R  F  M  *  V  F  P  *  S  K  Q  R  K  K  :  *  *  R  *  S  Q  E  S  V  E  G  *  A  T  S  R  W  L  R  S  L  L  *  S  Q :   C  S  E  Q  A  Y  *  F  G  R  E  H  L  H  P  S  Y  K  G  R  V  R  S  S  C  L  R  I  Q   : F  C  Y  A  I  P  F  R  L  A  H  C  C  K  F  L  Q  A  *  R  R  Q  S  L  K  Q  Y  *  S  K  I  R  C  *  T  *  M  E  S  I  V  L  V  K  V  *  A  R  C  L  Y  Y  D  C  R  G  N  M  F  L  H  P  L  D  R  H  F  V  *  T  L  I  H  L  H  P  P  M  S  S  N  R  R  *  *  Y  *  L  S  S  C  N  A  D  L  L  *  V  V  F  Y  C  V  A  V  E  T  H  *  L  I  I  L  I  P  V  E  C  E  I  Q  S  S  F  C  *  M  Y  L  A  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97787" stop="98138"/>
                    <exon start="99118" stop="99215"/>
                    <exon start="99324" stop="99416"/>
                    <exon start="99646" stop="99740"/>
                    <exon start="99963" stop="100036"/>
                    <exon start="100135" stop="100223"/>
                    <exon start="100868" stop="100987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLQEGVFPNSTFDSCFSKILVKRLNLCYPFCLKSLVAMSVFSLSASPASGFSLNPTKTSSYLSFSSSINTIFAPLTSNTTKSFSGLTYKAALPRNLSLTCRHSDYFEPQQQQQQLQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSKEGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNTNPRSGAELEWNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="104547" PGL_stop="106600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104547" e_stop="104577"/>
            <exon e_start="105239" e_stop="105754"/>
            <exon e_start="105908" e_stop="106021"/>
            <exon e_start="106522" e_stop="106600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.872" e_score="0.990"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104547" e_stop="104577" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="104578" i_stop="105238" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105239" e_stop="105754" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105755" i_stop="105907" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="105908" e_stop="106021" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.872">
            <gDNA_intron_boundary i_start="106022" i_stop="106521" i_length="500"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="106522" e_stop="106600" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104547" stop="104577"/>
              <exon start="105239" stop="105754"/>
              <exon start="105908" stop="106021"/>
              <exon start="106522" stop="106600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104547" stop="104577"/>
              <exon start="105239" stop="105754"/>
              <exon start="105908" stop="106011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104548" stop="104577"/>
              <exon start="105239" stop="105754"/>
              <exon start="105908" stop="105947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGATAGAGCAATGGATTCTACTAAGAAG : GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG : ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAG : GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</gDNA_template>
            <first_frame> E  R  *  S  N  G  F  Y  *  E   : G  *  R  *  A  K  F  N  K  M  *  D  I  *  S  Q  R  R  K  *  K  A  K  K  D  V  I  *  N  D  E  *  L  *  I  F  G  N  V  F  S  R  H  I  N  S  K  K  Y  K  E  Y  Y  C  N  K  *  *  Y  S  *  R  K  R  T  S  G  T  C  F  F  E  L  R  E  K  *  *  Y  F  K  R  V  D  Q  E  G  V  I  I  *  *  S  K  *  K  *  *  K  P  *  *  I  I  I  *  W  A  *  A  W  I  R  L  *  I  H  S  R  K  *  F  R  G  A  K  E  G  E  Y  K  *  *  T  T  S  I  D  T  K  L  P  S  I  G  L  L  W  R  R  I  F  A  A  N  S  S  K  E  G  *  S  I  Y  T  G  C  V  *  H  Y  Y   : D  E  *  W  M  S  M  E  K  I  W  T  K  N  S  *  R  E  S  M  P  *  G  L  L  S  L  H  R  L  P  L  M  P  S  Q  E  T   : G  S  K  M  F  *  R  H  V  H  F  D  H  Y  I  *  R  N  T  *  S  P  P  S  I  F   </first_frame>
            <second_frame>  K  D  R  A  M  D  S  T  K  K  :  D  E  D  K  L  N  S  T  K  C  E  I  Y  E  A  K  E  E  N  E  R  L  K  R  M  L  S  K  M  M  N  D  Y  K  S  L  E  M  Y  F  Q  G  I  L  T  Q  K  N  T  K  N  I  I  A  T  S  N  N  I  H  E  E  K  E  Q  V  E  L  V  S  L  S  L  G  R  N  S  S  T  S  R  E  L  I  K  K  E  L  L  Y  D  D  Q  N  K  S  N  K  N  H  S  K  L  L  F  D  G  L  E  L  G  L  G  C  K  F  T  Q  E  N  S  F  E  G  P  K  K  E  N  I  N  N  E  R  R  V  L  I  Q  N  Y  L  P  S  D  Y  C  G  E  E  F  L  Q  Q  I  P  Q  K  K  A  R  V  S  I  R  A  V  C  D  T  I  T  :  M  N  D  G  C  Q  W  R  K  Y  G  Q  K  I  A  K  G  N  P  C  P  R  A  Y  Y  R  C  T  V  S  P  S  C  P  V  R  K  Q  :  V  Q  R  C  S  K  D  T  S  I  L  T  T  T  Y  E  G  T  H  N  H  P  L  P  F  S  </second_frame>
            <third_frame>   K  I  E  Q  W  I  L  L  R  R :   M  K  I  S  *  I  Q  Q  N  V  R  Y  M  K  P  K  K  K  M  K  G  *  K  G  C  Y  L  K  *  *  M  I  I  N  L  W  K  C  I  F  K  A  Y  *  L  K  K  I  Q  R  I  L  L  Q  Q  V  I  I  F  M  K  K  K  N  K  W  N  L  F  L  *  A  *  G  E  I  V  V  L  Q  E  S  *  S  R  R  S  Y  Y  M  M  I  K  I  K  V  I  K  T  I  V  N  Y  Y  L  M  G  L  S  L  D  *  V  V  N  S  L  K  K  I  V  S  R  G  Q  R  R  R  I  *  I  M  N  D  E  Y  *  Y  K  I  T  F  H  R  I  T  V  A  K  N  F  C  S  K  F  L  K  R  R  L  E  Y  L  Y  G  L  C  V  T  L  L  R :   *  M  M  D  V  N  G  E  N  M  D  K  K  *  L  K  G  I  H  A  L  G  L  T  I  V  A  P  S  P  P  H  A  Q  S  G  N  R :   F  K  D  V  L  K  T  R  P  F  *  P  L  H  M  K  E  H  I  I  T  P  F  H  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104548" stop="104577"/>
                    <exon start="105239" stop="105754"/>
                    <exon start="105908" stop="106021"/>
                    <exon start="106522" stop="106599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAMDSTKKDEDKLNSTKCEIYEAKEENERLKRMLSKMMNDYKSLEMYFQGILTQKNTKNIIATSNNIHEEKEQVELVSLSLGRNSSTSRELIKKELLYDDQNKSNKNHSKLLFDGLELGLGCKFTQENSFEGPKKENINNERRVLIQNYLPSDYCGEEFLQQIPQKKARVSIRAVCDTITMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRCSKDTSILTTTYEGTHNHPLPFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="106843" PGL_stop="107630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106843" e_stop="107630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="106843" e_stop="107630" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106843" stop="107630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106908" stop="107630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACAAACTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</gDNA_template>
            <first_frame> T  T  N  S  S  S  T  N  S  S  S  S  N  S  Y  S  T  L  C  N  N  I  K  S  E  I  G  P  S  S  Y  L  G  R  P  C  Y  S  N  Q  P  Y  I  T  S  K  E  Q  S  E  H  D  R  S  V  Q  C  R  S  Q  N  F  *  *  I  N  S  K  K  N  A  K  V  S  H  R  I  *  S  C  D  L  K  *  I  L  D  Y  F  L  Y  I  K  V  E  S  S  F  I  R  K  E  D  Y  F  C  F  Y  F  I  C  T  V  *  F  F  C  K  R  Y  F  F  I  N  L  *  K  S  S  T  I  V  F  I  *  H  Y  L  L  F  S  L  S  *  K  K  V  F  F  I  F  G  K  N  *  T  L  K  L  P  M  L  L  L  A  T  C  F  *  D  S  F  K  L  R  A  *  S  G  S  T  *  D  E  M  D  *  V  L  M  K  S  S  S  N  R  F  F  *  R  *  I  S  E  K  F  V  L  Y  N  M  F  F  H  L  F  P  P  N  Q  F  T  G  N  M  L  D  S  Q  *  N  S  K  F  S  N  F  I  V  *  E  H  Y  Y  F  S  S  I  Q  S  K  Y  Q  *  T  Y  H  D  H  R  D  C   </first_frame>
            <second_frame>  L  Q  T  H  Q  V  L  I  L  H  H  P  I  P  T  P  H  C  V  I  I  S  K  V  K  L  D  L  L  H  I  *  G  G  H  V  I  L  I  S  L  I  L  L  Q  K  N  N  Q  N  M  I  V  Q  Y  S  A  G  V  R  I  F  D  E  L  I  Q  K  K  M  Q  K  Y  H  I  G  F  D  H  V  T  *  N  E  F  W  T  T  F  C  T  L  K  *  N  L  L  L  Y  E  R  K  T  I  F  V  F  I  L  Y  V  R  Y  N  F  F  A  K  D  I  S  L  S  T  Y  R  N  P  Q  Q  L  Y  L  Y  D  T  I  Y  F  L  V  S  H  K  K  R  S  F  S  Y  S  E  K  I  E  L  *  N  F  P  C  C  S  *  Q  H  V  F  K  T  L  L  N  S  V  P  N  R  V  Q  H  K  M  K  W  I  K  Y  *  *  R  V  V  V  I  D  F  S  N  G  E  L  V  R  N  L  C  Y  T  T  C  F  S  I  Y  F  H  Q  I  S  S  L  G  I  C  *  I  L  N  E  I  V  N  F  L  I  L  L  Y  E  S  I  T  I  F  H  Q  F  N  Q  N  I  S  E  H  I  M  T  I  E  T  A  </second_frame>
            <third_frame>   Y  K  L  I  K  Y  *  F  F  I  I  Q  F  L  L  H  I  V  *  *  Y  Q  K  *  N  W  T  F  F  I  S  R  E  A  M  L  F  *  S  A  L  Y  Y  F  K  R  T  I  R  T  *  S  F  S  T  V  P  E  S  E  F  L  M  N  *  F  K  K  K  C  K  S  I  T  *  D  L  I  M  *  P  K  M  N  F  G  L  L  F  V  H  *  S  R  I  F  F  Y  T  K  G  R  L  F  L  F  L  F  Y  M  Y  G  I  I  F  L  Q  K  I  F  L  Y  Q  L  I  E  I  L  N  N  C  I  Y  M  T  L  F  T  F  *  S  L  I  K  K  G  L  F  H  I  R  K  K  L  N  F  K  T  S  H  V  A  L  S  N  M  F  L  R  L  F  *  T  P  C  L  I  G  F  N  I  R  *  N  G  L  S  T  N  E  E  *  *  *  *  I  F  L  T  V  N  *  *  E  I  C  V  I  Q  H  V  F  P  F  I  S  T  K  S  V  H  W  E  Y  A  R  F  S  M  K  *  *  I  F  *  F  Y  C  M  R  A  L  L  F  F  I  N  S  I  K  I  S  V  N  I  S  *  P  *  R  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0060G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="108702" PGL_stop="107748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108702" e_stop="108679"/>
            <exon e_start="108567" e_stop="108456"/>
            <exon e_start="108166" e_stop="107748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.380" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108702" e_stop="108679" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.380">
            <gDNA_intron_boundary i_start="108678" i_stop="108568" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108567" e_stop="108456" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108455" i_stop="108167" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="108166" e_stop="107748" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108702" stop="108679"/>
              <exon start="108567" stop="108456"/>
              <exon start="108166" stop="107748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108567" stop="108456"/>
              <exon start="108166" stop="107755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108543" stop="108456"/>
              <exon start="108166" stop="107757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGGACCAGACCACTTTACCAG : CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG : GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACCAAAGTTTAC</gDNA_template>
            <first_frame> C  W  T  R  P  L  Y  Q  :  R  E  G  S  R  K  G  R  H  L  S  V  G  N  Y  S  T  R  G  Y  Y  W  *  T  N  Q  L  S  K  R  S  R  R  P  *  A  S   : G  G  D  C  L  I  G  I  T  I  K  A  T  R  F  N  R  S  L  Y  T  R  Y  V  C  I  *  L  I  E  N  D  S  P  D  S  N  K  L  P  *  *  R  T  K  Q  A  S  I  S  R  R  R  S  L  A  Y  A  I  L  N  S  G  S  R  R  S  N  *  Q  W  K  P  Q  W  E  P  K  W  E  T  Q  W  K  N  K  W  K  S  *  *  *  V  L  L  I  I  E  N  C  H  Y  I  V  I  S  C  C  L  V  I  C  M  H  L  V  Q  H  S  S  V  T  Y  *  I  N  D  F  A  F  Y  I  T  K  M  Y  T  K  V  Y </first_frame>
            <second_frame>  A  G  P  D  H  F  T  S :   A  K  E  A  E  K  E  D  I  Y  Q  L  G  I  I  L  L  E  V  I  I  G  R  P  I  N  S  R  S  E  A  E  D  L  K  L  Q  :  V  E  T  A  L  S  E  S  P  S  K  L  R  D  L  T  D  P  C  I  R  G  T  F  A  Y  D  S  L  K  T  T  V  Q  I  A  I  N  C  L  D  K  E  P  S  R  R  P  S  V  E  D  V  L  W  H  M  Q  Y  S  I  Q  V  Q  E  G  A  T  N  S  G  N  L  S  G  N  Q  S  G  K  L  S  G  K  I  S  G  N  L  N  N  K  F  Y  *  *  *  R  T  V  I  I  L  L  Y  L  V  V  *  S  F  V  C  I  L  Y  S  T  V  Q  *  L  T  E  *  M  I  L  L  S  T  S  Q  K  C  T  P  K  F   </second_frame>
            <third_frame>   L  D  Q  T  T  L  P   : A  R  R  K  Q  K  R  K  T  F  I  S  W  E  L  F  Y  *  R  L  L  L  V  D  Q  S  T  L  E  A  K  Q  K  T  L  S  F  R :   W  R  L  P  Y  R  N  H  H  Q  S  Y  E  I  *  Q  I  L  V  Y  E  V  R  L  H  M  T  H  *  K  R  Q  S  R  *  Q  *  T  A  L  I  K  N  Q  A  G  V  H  Q  S  K  T  F  S  G  I  C  N  T  Q  F  R  F  K  K  E  Q  L  T  V  E  T  S  V  G  T  K  V  G  N  S  V  E  K  *  V  E  I  L  I  I  S  F  T  D  N  R  E  L  S  L  Y  C  Y  I  L  L  F  S  H  L  Y  A  S  C  T  A  Q  F  S  N  L  L  N  K  *  F  C  F  L  H  H  K  N  V  H  Q  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108701" stop="108679"/>
                    <exon start="108567" stop="108456"/>
                    <exon start="108166" stop="107882"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGPDHFTSAKEAEKEDIYQLGIILLEVIIGRPINSRSEAEDLKLQVETALSESPSKLRDLTDPCIRGTFAYDSLKTTVQIAINCLDKEPSRRPSVEDVLWHMQYSIQVQEGATNSGNLSGNQSGKLSGKISGNLNNKFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="111499" PGL_stop="109193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111499" e_stop="110150"/>
            <exon e_start="109861" e_stop="109728"/>
            <exon e_start="109419" e_stop="109193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.989" e_score="0.999"/>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="111499" e_stop="110150" e_length="1350"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.989">
            <gDNA_intron_boundary i_start="110149" i_stop="109862" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109861" e_stop="109728" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="109727" i_stop="109420" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109419" e_stop="109193" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111499" stop="111258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111494" stop="110951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111492" stop="110877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111480" stop="111033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="110595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111411" stop="111016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="110822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110975" stop="110454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110973" stop="110648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110597" stop="110150"/>
              <exon start="109861" stop="109728"/>
              <exon start="109419" stop="109193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG : GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG : CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</gDNA_template>
            <first_frame> L  T  L  L  *  I  L  E  L  Y  H  S  S  T  S  Q  K  N  F  K  K  S  A  H  S  F  V  S  S  K  D  C  F  F  W  G  F  *  V  F  *  L  *  R  V  C  C  F  L  V  C  F  C  F  F  K  F  H  F  H  H  L  S  *  F  L  Q  K  V  E  S  F  F  K  F  N  S  F  L  K  I  H  L  F  F  N  N  G  I  N  G  Q  I  F  V  L  S  H  N  L  L  L  L  L  S  L  V  L  V  I  I  *  L  S  *  Q  L  L  V  T  K  N  P  L  L  S  L  *  N  P  H  L  H  K  P  F  L  G  N  F  Q  L  I  H  F  S  L  L  L  L  S  F  L  V  *  K  S  Y  L  *  C  L  L  V  C  G  V  H  C  L  L  R  L  V  G  Y  I  H  L  R  Y  L  I  L  V  Q  I  S  F  L  V  R  F  H  H  L  *  *  I  *  R  T  *  N  L  L  F  *  L  E  I  C  L  M  E  V  Y  Q  I  *  K  G  *  S  Y  L  K  S  W  I  *  V  V  I  I  *  D  Q  S  F  H  L  *  V  I  T  I  T  I  I  L  S  H  *  I  *  V  T  I  S  L  D  Q  K  Y  L  M  D  S  T  S  L  L  I  C  K  I  L  I  C  L  L  T  N  L  L  V  Q  C  L  L  F  C  F  H  F  Q  Q  F  S  L  L  V  L  L  R  I  S  L  V  V  L  F  Q  E  V  C  L  V  A  T  I  *  N  L  S  I  F  R  V  I  Y  *  L  E  S  C  L  L  V  L  D  Q  V  Q  E  T  G  Q  *  L  M  F  G  I  V  C  Q  V  L  V  L  S  L  N  I  H  I  H  F  V  R  N  K  L  *  L  L  S  P  L  Q  E  L  V  V  K  R  N  N  P  Q  L  S  L  V  L  F  *  D  L  L  L  V  L  L  *  L  W  V  H  L  V  C  *  S  F  S  L  *  R  R  L  *  E  I  E  L  K  V  I  E  M  T  A  L  L  L  R  R  I  Q  P  F  Q  K  L  L  M  E  :  G  R  Q  G  G  Q  *  E  W  Y  H  *  D  F  H  H  I  M  F  S  L  *  R  K  W  K  K  Q  Q  T  V  L  I  Q  L  I  W  L  E  K  V  P  R  V  S :   Y  I  E  V  G  L  E  M  D  Q  W  S  *  *  N  V  *  N  *  S  R  S  I  H  L  K  F  C  S  S  T  W  R  *  Y  Q  S  *  G  I  D  I  *  S  V  F  L  D  T  V  L  L  L  T  K  I  I  Q  I  Q  L  A  L  Y  L  L  C  L  K  T  S  S  M  D  L  </first_frame>
            <second_frame>  S  L  Y  Y  R  F  L  N  Y  I  I  L  Q  L  H  K  K  I  L  K  K  V  L  T  L  L  *  A  Q  K  I  V  F  F  G  D  F  E  S  F  S  Y  E  G  C  V  V  S  W  F  V  F  V  F  S  S  S  I  F  I  I  S  V  S  S  C  R  K  *  N  P  F  S  N  S  T  V  S  *  K  S  T  C  S  S  T  M  E  *  M  D  K  F  L  F  Y  P  T  I  S  F  S  C  Y  H  L  F  W  *  S  Y  N  *  V  N  N  C  W  *  Q  K  I  P  F  *  V  F  K  I  L  I  S  T  S  P  F  W  E  I  F  N  *  F  I  F  H  C  C  Y  *  A  F  *  F  K  K  A  I  F  S  V  S  W  F  V  G  F  I  A  C  *  D  *  *  V  T  F  T  *  G  T  *  Y  *  F  K  F  H  S  W  *  D  S  I  I  Y  S  E  F  K  E  P  E  I  S  C  F  S  *  K  F  V  *  W  K  C  T  R  S  E  R  V  K  V  T  *  R  V  G  F  E  W  *  *  F  R  T  K  V  S  I  F  R  *  L  Q  *  Q  *  S  C  L  I  E  F  E  *  Q  F  L  *  I  R  N  T  *  W  I  Q  Q  V  Y  S  F  A  K  S  *  F  V  F  *  Q  T  C  W  S  N  A  C  F  S  V  F  T  S  S  N  S  V  Y  *  Y  C  *  E  S  A  *  W  C  S  S  R  K  C  V  L  *  Q  Q  S  K  I  C  R  F  F  E  *  F  I  D  W  K  V  A  Y  L  S  W  I  K  F  K  K  Q  D  S  D  *  C  L  E  L  F  V  K  Y  *  Y  *  V  S  T  S  T  Y  I  L  *  E  T  S  Y  S  C  *  A  P  S  K  N  *  W  *  K  G  T  I  H  S  *  A  W  C  C  F  R  T  Y  C  W  Y  C  C  S  C  G  C  I  W  F  A  D  L  F  H  C  E  E  G  Y  E  K  *  S  *  K  L  *  K  *  Q  L  C  F  *  E  E  F  N  P  F  K  N  Y  *  W  R :   E  G  K  E  D  N  E  N  G  I  I  R  T  S  T  I  S  C  F  H  F  R  G  N  G  R  S  N  K  Q  F  *  S  N  *  S  G  W  R  R  F  P  G  S   : A  I  *  R  L  A  *  R  W  I  S  G  P  S  K  M  S  E  I  E  A  E  A  F  T  S  N  S  A  A  A  H  G  D  D  I  K  A  K  A  S  T  F  S  Q  C  S  W  T  L  C  C  Y  L  P  R  S  S  K  Y  S  *  H  C  I  Y  C  A  *  K  R  R  Q  W  I  S </second_frame>
            <third_frame>   H  S  I  I  D  S  *  I  I  S  F  F  N  F  T  K  K  F  *  K  K  C  S  L  F  C  E  L  K  R  L  F  F  L  G  I  L  S  L  L  A  M  K  G  V  L  F  L  G  L  F  L  F  F  Q  V  P  F  S  S  S  Q  L  V  P  A  E  S  R  I  L  F  Q  I  Q  Q  F  L  E  N  P  P  V  L  Q  Q  W  N  K  W  T  N  F  C  F  I  P  Q  S  P  S  L  V  I  T  C  S  G  N  H  I  T  E  L  T  I  V  G  N  K  K  S  P  F  E  S  L  K  S  S  S  P  Q  A  L  S  G  K  F  S  I  D  S  F  F  T  V  V  T  K  L  S  S  L  K  K  L  S  L  V  S  L  G  L  W  G  S  L  P  A  K  I  S  R  L  H  S  L  E  V  L  N  I  S  S  N  F  I  L  G  E  I  P  S  S  I  V  N  L  K  N  L  K  S  L  V  L  A  R  N  L  F  N  G  S  V  P  D  L  K  G  L  K  L  L  E  E  L  D  L  S  G  N  N  L  G  P  K  F  P  S  L  G  D  Y  N  N  N  N  L  V  S  L  N  L  S  N  N  F  F  R  S  E  I  P  N  G  F  N  K  F  T  H  L  Q  N  L  D  L  S  S  N  K  L  V  G  P  M  P  A  F  L  F  S  L  P  A  I  Q  S  I  S  I  A  K  N  Q  L  S  G  A  L  P  G  S  V  S  C  S  N  N  L  K  F  V  D  F  S  S  N  L  L  I  G  K  L  P  T  C  L  G  S  S  S  R  N  R  T  V  I  N  V  W  N  C  L  S  S  T  S  T  K  S  Q  H  P  H  T  F  C  E  K  Q  A  I  A  V  K  P  P  P  R  T  S  G  E  K  E  Q  S  T  V  K  L  G  V  V  L  G  L  I  A  G  I  V  V  V  V  G  A  F  G  L  L  I  F  F  I  V  K  K  V  M  R  N  R  V  E  S  Y  R  N  D  S  F  A  F  E  K  N  S  T  L  S  K  T  T  D  G   : G  K  A  R  R  T  M  R  M  V  S  L  G  L  P  P  Y  H  V  F  T  L  E  E  M  E  E  A  T  N  S  F  D  P  T  N  L  V  G  E  G  S  Q  G  Q  :  L  Y  R  G  W  L  R  D  G  S  V  V  L  V  K  C  L  K  L  K  Q  K  H  S  P  Q  I  L  Q  Q  H  M  E  M  I  S  K  L  R  H  R  H  L  V  S  V  L  G  H  C  V  V  T  Y  Q  D  H  P  N  T  A  S  T  V  F  I  V  L  E  N  V  V  N  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111440" stop="110150"/>
                    <exon start="109861" stop="109728"/>
                    <exon start="109419" stop="109195"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKCSLFCELKRLFFLGILSLLAMKGVLFLGLFLFFQVPFSSSQLVPAESRILFQIQQFLENPPVLQQWNKWTNFCFIPQSPSLVITCSGNHITELTIVGNKKSPFESLKSSSPQALSGKFSIDSFFTVVTKLSSLKKLSLVSLGLWGSLPAKISRLHSLEVLNISSNFILGEIPSSIVNLKNLKSLVLARNLFNGSVPDLKGLKLLEELDLSGNNLGPKFPSLGDYNNNNLVSLNLSNNFFRSEIPNGFNKFTHLQNLDLSSNKLVGPMPAFLFSLPAIQSISIAKNQLSGALPGSVSCSNNLKFVDFSSNLLIGKLPTCLGSSSRNRTVINVWNCLSSTSTKSQHPHTFCEKQAIAVKPPPRTSGEKEQSTVKLGVVLGLIAGIVVVVGAFGLLIFFIVKKVMRNRVESYRNDSFAFEKNSTLSKTTDGGKARRTMRMVSLGLPPYHVFTLEEMEEATNSFDPTNLVGEGSQGQLYRGWLRDGSVVLVKCLKLKQKHSPQILQQHMEMISKLRHRHLVSVLGHCVVTYQDHPNTASTVFIVLENVVNGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="117992" PGL_stop="122619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117992" e_stop="118070"/>
            <exon e_start="118243" e_stop="118288"/>
            <exon e_start="119394" e_stop="119501"/>
            <exon e_start="120162" e_stop="120443"/>
            <exon e_start="121400" e_stop="121600"/>
            <exon e_start="122106" e_stop="122186"/>
            <exon e_start="122511" e_stop="122619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117992" e_stop="118070" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="118071" i_stop="118242" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118243" e_stop="118288" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.877">
            <gDNA_intron_boundary i_start="118289" i_stop="119393" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119394" e_stop="119501" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.932">
            <gDNA_intron_boundary i_start="119502" i_stop="120161" i_length="660"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120162" e_stop="120443" e_length="282"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.758">
            <gDNA_intron_boundary i_start="120444" i_stop="121399" i_length="956"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121400" e_stop="121600" e_length="201"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="121601" i_stop="122105" i_length="505"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122106" e_stop="122186" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="122187" i_stop="122510" i_length="324"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122511" e_stop="122619" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117992" stop="118070"/>
              <exon start="118243" stop="118288"/>
              <exon start="119394" stop="119501"/>
              <exon start="120162" stop="120443"/>
              <exon start="121400" stop="121600"/>
              <exon start="122106" stop="122186"/>
              <exon start="122511" stop="122556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117994" stop="118070"/>
              <exon start="118243" stop="118288"/>
              <exon start="119394" stop="119501"/>
              <exon start="120162" stop="120443"/>
              <exon start="121400" stop="121600"/>
              <exon start="122106" stop="122186"/>
              <exon start="122511" stop="122619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118035" stop="118070"/>
              <exon start="118243" stop="118288"/>
              <exon start="119394" stop="119501"/>
              <exon start="120162" stop="120443"/>
              <exon start="121400" stop="121600"/>
              <exon start="122106" stop="122127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118056" stop="118070"/>
              <exon start="118243" stop="118288"/>
              <exon start="119394" stop="119501"/>
              <exon start="120162" stop="120443"/>
              <exon start="121400" stop="121600"/>
              <exon start="122106" stop="122186"/>
              <exon start="122511" stop="122560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG : TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG : GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG : AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG : GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG : GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG : CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</gDNA_template>
            <first_frame> K  T  N  F  T  L  L  V  V  E  C  R  L  S  L  Y  S  L  L  L  E  D  E  Q  R  N   : V  K  Q  G  F  L  L  K  L  Q  S  L  L  C  L  R :   F  L  R  C  G  Q  S  N  L  L  L  W  E  N  L  L  E  S  G  S  G  H  C  C  Q  G  K  S  L  P  N  L  A  H  Q  R :   N  L  Q  M  R  K  H  L  *  F  P  P  M  R  H  C  P  V  R  L  S  I  C  H  *  Y  L  N  Q  L  L  V  M  L  V  E  *  K  K  T  R  T  L  R  K  E  G  S  L  M  R  *  F  S  L  L  S  S  E  M  E  T  N  R  I  L  V  L  P  Y  L  R  I  L  R  K  *  G  L  S  K  Q  L  Q  R  H  K  L  L  L  G  V  I  W :   L  A  E  H  F  L  G  S  R  G  P  *  G  Y  K  L  Q  Y  V  A  I  W  S  E  G  R  L  L  L  H  Y  T  V  Y  M  A  L  S  N  F  K  Q  I  S  V  A  R  L  L  D  V  P  V  L  A  V  N  *  *  P  N  K  D  L  K  N  R :   M  P  N  N  W  I  I  R  E  L  M  H  P  N  *  H  G  S  Y  P  L  T  D  S  L  Q  S :   Y  L  L  H  Y  L  L  E  C  L  Y  T  S  I  M  V  K  R  S  Q  I  L  V  R  N  G  L  S  V  G  L  Y  H  R  F  G </first_frame>
            <second_frame>  K  Q  T  L  P  C  L  L  L  S  A  V  C  L  F  T  L  F  F  L  K  M  S  K  E  M  :  L  N  K  G  F  C  *  S  Y  N  L  C  S  V  *   : G  S  Y  V  V  G  N  Q  T  Y  Y  Y  G  K  I  S  W  K  V  A  Q  V  I  V  A  R  E  K  V  F  Q  I  W  H  I  K   : E  I  F  K  *  E  S  I  C  N  F  H  Q  C  G  I  V  R  F  V  C  P  S  A  I  D  I  *  T  S  C  L  *  C  W  W  N  K  R  R  L  E  L  *  E  R  R  G  H  *  *  G  D  S  P  F  Y  R  A  R  W  R  R  T  E  Y  L  S  Y  L  T  *  G  Y  *  E  N  E  A  *  A  S  S  Y  K  G  T  S  Y  C  *  G  L  S   : G  S  P  S  I  S  *  A  Q  G  D  H  K  A  T  S  C  S  T  W  P  S  G  Q  K  A  G  C  C  Y  I  I  L  Y  T  W  H  C  Q  T  S  S  K  Y  P  W  P  D  C  *  T  F  Q  Y  W  L  *  T  N  N  Q  T  R  T  *  K  T   : G  C  Q  T  I  G  L  S  E  S  *  C  I  Q  T  S  T  G  A  I  H  *  R  I  H  Y  K   : A  T  C  F  I  T  Y  W  N  A  S  T  P  P  L  W  S  R  G  A  K  F  *  S  G  M  A  C  P  L  D  Y  I  T  D  L   </second_frame>
            <third_frame>   N  K  L  Y  P  A  C  C  *  V  P  F  V  S  L  L  S  S  S  *  R  *  A  K  K  C :   *  T  R  V  F  V  K  V  T  I  F  A  L  F  E  :  V  L  T  L  W  A  I  K  L  I  T  M  G  K  S  P  G  K  W  L  R  S  L  L  P  G  K  K  S  S  K  S  G  T  S  K  :  K  S  S  N  E  K  A  S  V  I  S  T  N  A  A  L  S  G  S  S  V  H  L  P  L  I  S  E  P  V  A  C  N  A  G  G  I  K  E  D  S  N  F  E  K  G  G  V  T  N  E  V  I  L  P  S  I  E  R  D  G  D  E  Q  N  T  C  L  T  L  P  E  D  T  E  K  M  R  L  E  Q  A  A  T  K  A  Q  A  I  V  R  G  Y  L  :  A  R  R  A  F  L  R  L  K  G  T  I  R  L  Q  A  A  V  R  G  H  L  V  R  R  Q  A  V  A  T  L  Y  C  I  H  G  I  V  K  L  Q  A  N  I  R  G  Q  I  A  R  R  S  S  I  G  C  E  L  I  T  K  Q  G  L  E  K  Q  :  D  A  K  Q  L  D  Y  Q  R  A  N  A  S  K  L  A  R  E  L  S  T  N  G  F  T  T  K  :  L  L  A  S  L  P  T  G  M  P  L  H  L  H  Y  G  Q  E  E  P  N  S  S  Q  E  W  L  V  R  W  T  I  S  Q  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118247" stop="118288"/>
                    <exon start="119394" stop="119501"/>
                    <exon start="120162" stop="120443"/>
                    <exon start="121400" stop="121600"/>
                    <exon start="122106" stop="122186"/>
                    <exon start="122511" stop="122618"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRVFVKVTIFALFEVLTLWAIKLITMGKSPGKWLRSLLPGKKSSKSGTSKKSSNEKASVISTNAALSGSSVHLPLISEPVACNAGGIKEDSNFEKGGVTNEVILPSIERDGDEQNTCLTLPEDTEKMRLEQAATKAQAIVRGYLARRAFLRLKGTIRLQAAVRGHLVRRQAVATLYCIHGIVKLQANIRGQIARRSSIGCELITKQGLEKQDAKQLDYQRANASKLARELSTNGFTTKLLASLPTGMPLHLHYGQEEPNSSQEWLVRWTISQIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="122645" PGL_stop="123495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122645" e_stop="123495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="122645" e_stop="123495" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122645" stop="123327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122645" stop="123136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122720" stop="123495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGGGAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</gDNA_template>
            <first_frame> S  G  K  K  T  S  K  C  *  S  R  H  C  Y  V  K  A  Q  C  K  E  S  T  F  *  K  N  A  E  R  F  K  S  F  H  F  F  G  V  R  K  E  E  I  K  S  F  G  K  L  C  S  S  E  S  R  K  *  D  *  E  G  K  T  *  F  K  E  N  V  Q  P  Y  I  G  K  T  S  S  V  *  G  *  H  *  A  K  K  A  K  S  *  Q  I  I  K  H  G  I  *  *  T  I  E  K  F  R  R  D  S  *  K  F  Y  *  C  G  P  T  S  R  S  G  G  R  Y  Y  H  S  F  G  Y  P  F  C  I  *  Y  S  S  Q  I  D  Y  *  C  C  G  S  E  I  D  H  *  *  Q  R  G  *  Y  S  C  R  E  *  G  F  L  Y  *  P  *  *  *  *  R  K  *  E  Q  Q  G  *  Q  K  S  F  F  T  C  K  A  *  C  R  C  K  Y  T  H  N  K  K  G  A  Q  L  H  G  S  N  Q  V  C  *  S  *  A  E  G  A  S  L  T  K  V  W  A  R  C  G  *  E  E  C  R  N  Q  T  S  F  F  T  V  P  Y  E  W  K  A  E  F  I  T  I  T  T  G  A  E  A  G  P  S  *  C  *  R  R  N  Q  D  R  Q  I  F  I  V  F  K  G  W  Y   </first_frame>
            <second_frame>  P  G  K  K  H  Q  N  A  E  A  D  I  A  M  S  K  H  S  V  R  K  V  H  S  K  K  M  Q  N  G  S  N  H  S  T  S  S  G  S  E  K  K  K  S  S  H  L  V  N  S  V  L  Q  N  P  G  S  E  I  K  K  V  K  H  S  L  K  K  T  S  S  P  I  L  E  K  P  V  Q  S  E  V  D  T  E  R  K  R  Q  S  H  D  K  S  S  S  M  A  S  D  E  P  L  K  N  S  E  G  T  V  E  N  S  T  N  V  A  P  P  P  V  V  V  D  D  T  I  T  H  L  D  I  L  S  V  S  D  T  H  H  K  S  T  T  D  A  A  D  Q  K  S  I  T  D  N  R  E  D  D  T  P  V  A  N  E  D  F  C  T  N  H  D  N  N  E  G  S  E  S  N  K  V  N  R  R  V  S  L  P  A  K  H  D  V  D  A  S  T  P  T  T  R  K  V  P  S  Y  M  A  P  T  K  S  A  K  A  K  L  K  E  Q  A  S  P  R  F  G  Q  D  V  A  E  K  N  A  V  T  R  R  H  S  L  P  S  P  M  N  G  K  L  S  S  S  P  S  P  R  V  Q  R  L  V  Q  A  S  A  K  E  G  I  K  I  D  R  S  L  S  S  S  R  D  G  T  </second_frame>
            <third_frame>   R  E  K  N  I  K  M  L  K  Q  T  L  L  C  Q  S  T  V  *  G  K  Y  I  L  K  K  C  R  T  V  Q  I  I  P  L  L  R  G  Q  K  R  R  N  Q  V  I  W  *  T  L  F  F  R  I  Q  E  V  R  L  R  R  *  N  I  V  *  R  K  R  P  A  L  Y  W  K  N  Q  F  S  L  R  L  T  L  S  E  K  G  K  V  M  T  N  H  Q  A  W  H  L  M  N  H  *  K  I  Q  K  G  Q  L  K  I  L  L  M  W  P  H  L  P  *  W  W  T  I  L  S  L  I  W  I  S  F  L  Y  L  I  L  I  T  N  R  L  L  M  L  R  I  R  N  R  S  L  I  T  E  R  M  I  L  L  S  R  M  R  I  F  V  L  T  M  I  I  M  K  E  V  R  A  T  R  L  T  E  E  F  L  Y  L  Q  S  M  M  S  M  Q  V  H  P  Q  Q  E  R  C  P  A  T  W  L  Q  P  S  L  L  K  L  S  *  R  S  K  P  H  Q  G  L  G  K  M  W  L  R  R  M  P  *  P  D  V  I  L  Y  R  P  L  *  M  E  S  *  V  H  H  H  H  H  G  C  R  G  W  S  K  L  V  L  K  K  E  S  R  S  T  D  L  Y  R  L  Q  G  M  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0060G21.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122646" stop="123494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKKHQNAEADIAMSKHSVRKVHSKKMQNGSNHSTSSGSEKKKSSHLVNSVLQNPGSEIKKVKHSLKKTSSPILEKPVQSEVDTERKRQSHDKSSSMASDEPLKNSEGTVENSTNVAPPPVVVDDTITHLDILSVSDTHHKSTTDAADQKSITDNREDDTPVANEDFCTNHDNNEGSESNKVNRRVSLPAKHDVDASTPTTRKVPSYMAPTKSAKAKLKEQASPRFGQDVAEKNAVTRRHSLPSPMNGKLSSSPSPRVQRLVQASAKEGIKIDRSLSSSRDGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 198 chains have been computed
$ 
$ memory statistics:
$ 665336 bytes spliced alignments in total
$ 171 spliced alignments have been stored
$ 3890 bytes was the average size of a spliced alignment
$ 37576 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1633 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 215 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:36:09
-->
