<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:52:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549718" ref_strand="+" ref_description="SGN-E549718 [TUS-6-E20](-)">
      <seq>gacatcaccaatgagtcccttcattggttcttctgatgtagcggagagagtgagtattgataagcaaattagtgctgctccgagcaatagctcggtatcagtaaatcaagtaccggaagggaaaaatctttctcaatcagtttcatttagtgagagagccactcccatacctgatgtgcttccaagtggcgattcaggttgtacacatctatggttgcagagcagagttcccttgggatgtgtgcccgctcaatctacagcaaccatcaaacttgaagtacttcccctgacggatggtataatcacacttgattctttacagattgatgtaaaggagaaaggtgtgacatatgttcctgagcattctctgaagatcaatgcaacttcaagcatttccactgggattatctgaggtgactatttacagttttcagacgtcgtaagtggacagaaagatactcatagtggtagtgtcatacgtagatgatatcgtgagtttgatgtaaatttgaggagtccctttgatgtgtgatgattttgtgtagatttataaaatgccaaaggtgagaatggattatgtgaagggatagtgacggtaccttattgtagatgatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="2125" stop="4125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2425" g_stop="2661" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="2735" i_length="74">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2736" g_stop="2839" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="341" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2840" i_stop="3547" i_length="708">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3548" g_stop="3825" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="619" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E549718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2425" e_stop="2661"/>
          <exon e_start="2736" e_stop="2839"/>
          <exon e_start="3548" e_stop="3825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATCTTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGCCACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTAGTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTTCCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTGACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAAGTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGTTTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATCCATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCTGTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAACTAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAGTTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAATTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTAT</genome_strand>
        <mrna_strand>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATGTAGCGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG..........................................................................ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATAGTGACGGTACCTTATTGTAGATGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244976" ref_strand="-" ref_description="SGN-E244976 [cLEF-2-F11]">
      <seq>ggcgattcaggttgtacacatctatggttgcagagcagagttcccttgggatgtgtgcccgctcaatctacagcaaccatcaaacttgaagtacttcccctgacggatggtataatcacacttgattctttacagattgatgtaaaggagaaaggtgtgacatatgttcctgagcattctctgaagatcaatgcaacttcaagcatttccactgggattatctgaggtgactatttacagttttcagacgtcgtaagtggacagaaagatactcatagtggtagtgtcatacgtagatgatatcgtgagtttgatgtaaatttaaggagtccctttgatgtgtgatgattttgtgtagatttataaaatgccaaaggtgagaatggattatgtgaagggattgtgactgtaccttattgtagatgatgttatgttcaatttgaagtaccaactagggggaaaattgaaaagcaaatgataaggataaaaaaaaaacaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="2312" stop="4179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2612" g_stop="2661" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="2735" i_length="74">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2736" g_stop="2839" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2840" i_stop="3547" i_length="708">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3548" g_stop="3878" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="485" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="502"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E244976" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2612" e_stop="2661"/>
          <exon e_start="2736" e_stop="2839"/>
          <exon e_start="3548" e_stop="3878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGGGTAATCATTTATTTGTAAATTATCTTTATTTCGCAGTTCGGGTTTAATCTTACACCCCTTTGTGGTGGTTTCAGATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAGGTATTAGCTGAGTTCAAATTGTTAAACTCGTTTCTTGCCACTTTCGTTATTTAAATATCCACTTGAGATGGCGGCAATGATACGACATCAACCCCTGCCTTAGTTCCTTAAGCATATTTCACTTTTATATCAGAAATACTAGAACTTTTCATAAATATCATATTTTCCTTGGTTCCTTTCCCGCTCTTGAATTATTACTCAAAAATTAGTGCAAGGTATTACGCGCCTTGACAGTTGTGTCGGATTTATTTGAATTGAAAGAACAGAGATGAGATCAGTTAAGAGGAAAATAAAGTATGGAAAGAAAGGAGAAGACCCTATTTGGTTGGATGAAAATTAGAACTTATCGAGCTACGGTTTTACCCCAATTTCTGGTGGGTAAAATACTTAAAACTTCTGTGGCTTCAGTAATTATCTTAATCCATCTCTTTCATTCTTCTATTTACACCTTTTTTGTCGGGTAGACTGCAAAAAGCAGAGTAAGCTGTTGATATAATTAGATTTGATGCAGTTTGTGTTATCTTTTATGAACTATGGTGCATTTACGAACTAATTGAGTAATTTACGAGCAGAGTACAAGTGATCCTCTCCTATGGTGCTTGTGTCGTCTGTAGTTTTTGTATGTGCTACTATCTGTTTGAGTCTAGAACAAGTTAAACGTCAATATCGTAAGATGAATTAACTGAGACAAATATTCTGCATTGGCAGGTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</genome_strand>
        <mrna_strand>GGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG..........................................................................ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTAAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718293" ref_strand="+" ref_description="SGN-E718293 [FC04BA07]">
      <seq>ggccaaatcggccgaattgattcaaacataaaccccagattcaattttttttaaaaaaaaaacatattcctaagggcttattctactactaattattcttcagggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagggagaatatcgtcgacaatgaattcaaaagatgaaaacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcaaaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtaaacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaaaagcctatctggtttaattatatatagttattataaaaattaagaaggttattaatcttgttatttacaattatgttgagtttatatgcatatatatatatatatatatatatatatatatatatatgtgaaaattcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6694" stop="7947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6994" g_stop="7647" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="668" r_length="653" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E718293" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6994" e_stop="7647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</genome_strand>
        <mrna_strand>ATTGATTC-AAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAAGGGCTTATTCTACTACTAATTATTCTTCAGGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGGGAGAATATCGTCGACAATGAATTCAAAAGATGAAAACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAAAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAAACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAAAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATGTGAAAATTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243157" ref_strand="+" ref_description="SGN-E243157 [cLEE-2-O18]">
      <seq>ccagattcaattttttttaaaaacaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaatagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaagagttaattaattgctcaataataaagaataatcatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6714" stop="7812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7014" g_stop="7518" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E243157" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7014" e_stop="7518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGT</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAACAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAATAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAGAGTTAATTAATTGCTCAATAATAAAGAATAATCATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244027" ref_strand="+" ref_description="SGN-E244027 [cLEE-1-K4]">
      <seq>ccagattcaattttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6714" stop="7809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7014" g_stop="7509" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E244027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7014" e_stop="7509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGC</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244193" ref_strand="+" ref_description="SGN-E244193 [cLEE-1-J4]">
      <seq>ccagattcaattttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6714" stop="7807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7014" g_stop="7507" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E244193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7014" e_stop="7507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGA</genome_strand>
        <mrna_strand>CCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725191" ref_strand="+" ref_description="SGN-E725191 [FC26BD12]">
      <seq>attttttttaaaaaaaaaaacatattcctaagggcttattctactactaattattcttcagggaaattcatgtacttaattctcacattatctcttgttctgggctatgcttcttcagggagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggggacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6723" stop="14690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7022" g_stop="7491" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7492" i_stop="9660" i_length="2169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9661" g_stop="9721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="531" r_length="61" r_score="0.754"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E725191" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7022" e_stop="7491"/>
          <exon e_start="9661" e_stop="9721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATTAATATGAAAGAACTATGACAGTACGTATACTTTGTCGTATAGTGCCATCCTCCCCGCTAGCTTTATGGGCGGAATATTGTCCCTCGAATTATTGCATGTGTTCTTTTGAGCTATGAATTAAAGGAATAAATGTAGTTAAAATTTTTCGCATGAAAACACTAATATATTTTTTTTCTTTTGTCACTAATTCAATCAAAATATTTGTGCCTAAACATTTTTCGATGAAAAATTTCAATGGGAAAAATAATGATCTTGTAGTAATGAACTAATGGCTCATCTAGTTAGTTAGCACCAGAGTGGAGCTAGCTAGCCAGATAGGACTAAGGGGGGTTCAACGATAAAAAATTTACATGATATATGATTAATTTTTTTTAATATATGTATATAGAGTAAATGTTGTGTACTAGTCTCTGTATTTCTTTGTTTTCATCTTTTACGTAGCTACAACATTTTGATATTTCGCGAAGGATCAATTACTAAGTTTACCCTAAGTCGAGAAATTATCCTCTGGTCGATATCTTAATATATTTTATTTATTTATTGCTTTGGTTCGGGAGAATTTTATTTACTTAATTAGGAGGTTCATCCAATAAAAAAAAAAGAACAGATCTAAACGATACAGACGATAACTTAATATATTTCCTCTCTAGACGGTAACTTAATATATTTCCTCTCTAGAAACAACATTCAGATAACTCGATAGAATAGTTTTCCATATTTACAATATGTGATACTTGGATAAACTGTATCCTATCAAAGACGATTCTATTCTCGAGACTCAAACCTCTGATTGATGCATTTGAGTTGCTATTCTGACATATTTTCAAGGGTTTTATTTAATTTTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTGACATAGCGTCTATATATAGTGCTAAGCTACGCCCTAAAAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCCGGACCCCTAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGAGCAGCGAGACCCCCGTCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAAATTTGTTTGTGGATTTGTTACAAATGTTTGTTACTTAATCCTTCCAATTTGATTTATCTGGGGTGACTAGATCACTTGTACTTTTTTTCTTGAACCGAGGGTTAATTAAAAATAATTTTTCTATCGTTAAGGTAAAAATAAATATGTTTCCATTATATCCTTTTCAAATCTTATTTTATAGAATTATACTGAATATATTAATATTATCATTGACGAGCTCAATATTTTTTTTTATTTTTTCTTGCCGTTTTACACCTATTAAAAGAAAAGTTAGTCAAGCACTTCCTCCCAATACACACACCAAACAAAAGAAAAGATAGTAAAACATTTTTTTTTCTTTTATTAATTGTTGTTGAACTATAAACTTTCTACGAAGACACGTAAAGCCTCATGAATTTAGGGAATATCCTCTTGTGCCACTCCTATTATTAAAGACGGATTTAGAATTTTTGAGGCATTAGATATTACGATATTTTAAATTTTGACATTTATTTTTTTTAAATTCGATTTAAATGAGTCGATCAAATGAAAACAATTTTGAACAAAGCATAAAACTTCAATAGTGTCATGAATATCACTAAAAAATATATTATCTATATATATGTTCTTGATGAGTTTTTGTATTCTAAAGCTATCGACTCGATTCTCAAAAAAAATAGATAATTAAAGCTAATACTCATAGAAAATCATAGTAAATAGAAGTAAGAATTAATAAAATTTGAAATGTCGATAGAAACTCATAAAGGAGAAAAGTGTCAAGGACAAATAAAGATAAAAATAAAATAATAAAGAAACAAGGAAAAGAAAAAATGATGAAAAAAAAGGGAAAAAA</genome_strand>
        <mrna_strand>ATTTTTTTTAAAAAAAAAAACATATTCCTAAGGGCTTATTCTACTACTAATTATTCTTCAGGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTGGGCTATGCTTCTTCAGGGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGGGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244062" ref_strand="+" ref_description="SGN-E244062 [cLEE-1-P5]">
      <seq>ttttttaaaaaaaaaacatattcctaatggcttattctactactaattattcttcatggaaattcatgtacttaattctcacattatctcttgttcttggctatgcttcttcagtgagaatatcgtcgacgatgaattcaaaagatgaagacgcttatacactattttcagaaccatctccaaaatatgaagacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagaaagagtttcaaaagagtaattcgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaatcgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6726" stop="7803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7026" g_stop="7503" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E244062" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7026" e_stop="7503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTG</genome_strand>
        <mrna_strand>TTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTCGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATCGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241739" ref_strand="+" ref_description="SGN-E241739 [cLEE-10-C17](-)">
      <seq>ttttcagaaccatctccaaaatatgaaaacgcttatacactattttcagaatcatctccgagatattacgatgaaaatgaaaagagagagtttcaaaagagtaatttgtttcatatgctaccaaaagggactctaattcctccttctggaccatcacgtagacacaatggagatggtgacttatctaattatccttaaaagttaattaattgcttaataataaagaataattatgttataatcatatatagtttcatttggatataatatttcataacatgatatgtaacaatactattattatagactgattgaagagcctaaaaggtttaattatatatagttattataaaaattaagaaggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="6890" stop="7856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7190" g_stop="7557" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E241739" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7190" e_stop="7557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTAT</genome_strand>
        <mrna_strand>TTTTCAGAACCATCTCCAAAATATGAAAACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAGAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTAAAAGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745695" ref_strand="+" ref_description="SGN-E745695 [GI|47105175]">
      <seq>ggaggtggggttgttggtggggttttcatgatatttgagtttgattttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtaatatatcgtgatttcaaaacatccaacattctactagacgcggattacaatgccaaactttctgattttggtcttgccaaagatggtcctgagggtgataagacacatgtttctactcgtgtcatgggaacgtatggttatgcagcccctgagtatgtgatgacagggcatctaacgtcaaagagtgacgtctacagttttggggtagttctacttgaaatgataacaggtaggagatcgatggacaagaaccgaccaaatggggaacacaaccttgttgaatgggcacggcctcatcttggtgaaagaagaaggttttacagattggtagaccctagacttgaaggtcatttttcaataaaaggtgctcagaaagctgcacagttggctgctcgttgccttagtcgtgatcccaaagttaggcctatgatgagtgaagtggtagaagccttgaagccattaccaaatcttaaagacatggccagctcatcctactatttccagacaatgcaagcagaccgagttggatcaagtccaagtaccaaaaatggcgttaggacacagggatcattctcgaggaatggacaacaacatcctagaagtctttcaatcccaaatggttctcatgcttctccataccatcaacagtttcctcagaactcaccaaaaccaaacggcaaaacttagtattattggattgacaagtaatctgtttctatcattcttttcgttttctctccagctatgaatatattttgttggccacctcccgttttgtcgttggatgaactggcaaaagggaaggagtgcacaattaacttaagttgtgatctttgaaaatgctgaactcccacttgaaaagaatgtattgtaagcggagctcaagtccatggagtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15059" stop="21711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15359" g_stop="15604" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="581" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="717" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19969" g_stop="20105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="854" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20182" g_stop="20305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="978" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20306" i_stop="20676" i_length="371">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20677" g_stop="21404" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1706" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1710" polyA_stop="1725"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E745695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1706</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15359" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20105"/>
          <exon e_start="20182" e_stop="20305"/>
          <exon e_start="20677" e_stop="21404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAGGTAGGGCTGAGATCTCGTAATTCCTACATTAGTTACCCTTTTGGTCGATTACAGTTTATCTGTATTATGTGGCAGTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTTAAAAGACCAATTTTTCTTTGAATAGTTAACTCCAGCTTATCTATATTATGTGGCACTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTCAAAACACCAAACTTGCTTTGAAAACCTTTCTGTACAAACTCCATAACCTGAGTCACAGACTCACAGTTGAAGAGTTTTCAATATGTTTGTTATTTGTTGACTAAAACTTTCATTGGATGGCTGATAAGTACCTCTCTTACTGATTGTAATTTGTCCTACTCATTTGTCTCAGGGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGA</genome_strand>
        <mrna_strand>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG...................................................................................................................................................................................................................................................................................................................................................................................GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544243" ref_strand="+" ref_description="SGN-E544243 [TUS-66-H15]">
      <seq>tttttttttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15098" stop="20339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15398" g_stop="15604" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="542" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="678" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19969" g_stop="20039" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="749" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E544243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15398" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307407" ref_strand="+" ref_description="SGN-E307407 [cLEY-12-E18]">
      <seq>ttttttttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15099" stop="17878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15399" g_stop="15604" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="541" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17686" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="552" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E307407" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15399" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAA</genome_strand>
        <mrna_strand>TTTTTTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692024" ref_strand="+" ref_description="SGN-E692024 [LH_Ea07K06]">
      <seq>tttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaagggaaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagcgaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagctcctgttaaaccagggacagggcttactgttgctgtgaaaacactaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatcttgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctattcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtaatatatcgtgatttcaaaacatcccacatcctactagatgcggattacaatgccaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15104" stop="20409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15404" g_stop="15604" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="533" r_length="335" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="669" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19969" g_stop="20105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="806" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76">
            <donor d_prob="0.664" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20182" g_stop="20199" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="824" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E692024" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15404" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20105"/>
          <exon e_start="20182" e_stop="20199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTT</genome_strand>
        <mrna_strand>TTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAA-GGGAA-A-GAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGCGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCTCCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACACTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTTGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTATTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCCACATCCTACTAGATGCG............................................................................GATTACAATGCCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331346" ref_strand="+" ref_description="SGN-E331346 [cTOD-9-I7]">
      <seq>ttaggtattgcaaaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggtttgcagctctcttcttttatttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15105" stop="17899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15405" g_stop="15604" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17599" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="564" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E331346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15405" e_stop="15604"/>
          <exon e_start="17236" e_stop="17599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</genome_strand>
        <mrna_strand>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708255" ref_strand="+" ref_description="SGN-E708255 [FA35BB01]">
      <seq>ccctaatatgggattaggtggtgatggtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttctaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaactctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgcctcgaggaagcttggaaaatcatctgttcaggagatccatgcctcttccttggtctatccgcatgaagattgctctgggtgctgcaaaaggtcttgcttttcttcacgaggaagcagacagaccagtaatatatcgtgatttcaaaacatccaacattctactagacgcggattacaatgccaaactttctgattttggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15118" stop="20515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15414" g_stop="15604" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="526" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="662" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19969" g_stop="20105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="799" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20182" g_stop="20215" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="833" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E708255" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15414" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20105"/>
          <exon e_start="20182" e_stop="20215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTG</genome_strand>
        <mrna_strand>CCCTAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCTAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGACAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306250" ref_strand="+" ref_description="SGN-E306250 [cLEY-13-J12]">
      <seq>gtgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtcttcaaggggtggatcgaagagaatggcacagcacctgttaaaccagggacagggcttactgttgctgtgaaaacctctaaatcatgatggacttcagggtcacaaagaatggctggctgaagtgaatttcctgggtgatctcgttcaccctaatttggttaaactgattggttactgcattgaagatgatcagagactgttagtttatgaatttatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15140" stop="18079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15440" g_stop="15604" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17570" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="501" r_length="336" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17676" g_stop="17780" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="606" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E306250" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15440" e_stop="15604"/>
          <exon e_start="17236" e_stop="17570"/>
          <exon e_start="17676" e_stop="17780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAA-CTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCT</genome_strand>
        <mrna_strand>GTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACCTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG.........................................................................................................GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303205" ref_strand="+" ref_description="SGN-E303205 [cLEX-5-A17]">
      <seq>tgaaaagggggagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgcggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaacttcagaccagagtcccttcttggtgaagggggtttcggatgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15141" stop="17757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15441" g_stop="15604" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17457" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="386" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E303205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15441" e_stop="15604"/>
          <exon e_start="17236" e_stop="17457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCT</genome_strand>
        <mrna_strand>TGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGCGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303204" ref_strand="+" ref_description="SGN-E303204 [cLEX-5-A15]">
      <seq>gagtcttgggatgtagagaaatcaaaggggaagaagaagaaagaggttgttgaagaggaaactggatgttggactaagttgtggtttattggtagctgtatctcttcaagatctaaagttgatagctccataagtggcatcagtactcactgtgaaagtaaatctacaaatgacacaagcagagaccaacctgttgcaccaattatctcatctacgactaccagcaatgcggaaagtaattcatccacctccaaacttgaagaggagcttaaagtttcttctcggcttcgaaaattcgcatttaacgatttgaagttggcaacaagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="15151" stop="17712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15451" g_stop="15604" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17236" g_stop="17412" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="331" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E303204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15451" e_stop="15604"/>
          <exon e_start="17236" e_stop="17412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTGGTAACTCTTTGCTCATTTTGAATAGAAGTTGCATGAAAAATGTTATGATTTGAAAGTCTAATTGCCTTCTGTTTTATGGATTCCTTTGGAAAAATTTGCTTTATAGTACCAAGGACATGTCTTATTATGTCTAGTGTTTTGGTTATTGAAGTGTTAGTCTAATGCTTTTATCTACTGAAATGCCTTTTGAGATTGGTAAATTGTTATGTAAGGCTTGTTGATAAATTGAGGTGGAAAGTTGGCTTGCACATATTTCTTGTACCGGTACTAGTTGATGATGTTAACTCAAAAGGGTAATAATGGAGGCACTCTAAAAGATTTAAAGATGGAAGCTGAATTTGGAAAATTGCTAGAGGCCTTTTCTCAGTAACACTAGGAATCTTAAACATCCGTTTGCAAAGGCACTTTTTTTGTTAGGGTGATAATGTCAGTATTCATATCAAAATGTTGGTGCAAGCTAATTCCTGTCACTGTGGTTGGGTTTTCTTTACTTGTATGTTTGCATGTGTATGGCCTAATTTGATATCCAAAAATTAACAATTAACCTGTATAATGTGAAGCTGAAAGAGCCACTTAATTTGCGATCACCTAAACAATACTGTTCTTTTATATACCATCCCCATCCTTATTCTCTATGAATATGACTCCTGCAAGGGTAGCAATTATCTCACAAATGAGAGAACTTTGAGCTGACTTTAGGGTTGATTTAGCACTCTTCTTGTCCTGGTCCTTGGTTTCTGTCTTTTGGTGTTCATGCGGGTCTTTCCAAGTTAGTGATTGTTAATGCTAGTTCACTGTATGAGGACAGTATTTTGGTCGCAATGGACAGTTAATATCTCCCCTTTTTGGGTTTCTTGCTTCGGTAATGCAAATTTGTTTGTGGATGTTAAATTGTTGAACTGTTGTCTTCTTATAATTATCACCTGATGAGATTACTTTTCGAGGATTGAGTTAGGTTCATGGTCGGTTTTCTTATCATGGCATCAGCGCCACACCTTCACCATTTTTGTGTTTTTCCAATGTTGGGCACCCATGTTATGTCCATGCTACAAAGTCAAGTTCTTGGCATTAGGGGGTTGTCGTCCCTTTTTATGTCTTATATAGTATTCACCGATTGAGCTAGTTTTTAAGGTTGAGTTAGGTTCAATGTCCTTTTTCTTTGATCACATGAATTATCTGTAGTTGATAGGAGAATCGACCAAATACTTTTACAAAATAACTAACCAATTGAAGTCATAGATGTCTTGACATGACGATAACATATCAATAAATAATTGATGACCTTGTGGACTTATTTTCTGCTGAAATACTTGTGAACTTGTAGCTCTTATTATGCCAACGAGCATCGTGTATGCATTTTGCTTGTAGTTGTTTAAACCCTTCTCTTTTTGTAACTAACATTTTATTAATCACCAAGGATGAGTTATGCAACGGCATAGAAAAACTATCACAATTACTATCTAATTGAAATCAGAAATAAGTAGCAGAAAAAAGCTAAGCTATTAGAAGAAAAGCTGTTGAATCTTTGCCCTGTTTAAACGCTTTGTTTTAGGAAAAAACAGTTATAACTTCTTATGTTTTCATTCAAGATAAATATGCCTTTGTTCTAACTTCTTGCATTGCTTTAGCAGAAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACT</genome_strand>
        <mrna_strand>GAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261546" ref_strand="+" ref_description="SGN-E261546 [cLEG-57-M20]">
      <seq>gggacggcacctgttaaaccaggaacggggcttactgttgctgtgaaaactctaaatcatgatggactacagggtcacaaagaatggctggcggaagtaaatttccttggcgatctcattcatcccaatttggttaaactaattggttactgtattgaagatgatcagaggttgctggtttatgaatttatgcctcgaggaagcttggaaaaccatctgttcaggaggtccctgcctcttccgtggtccatccgcatgaagatagcattgggtgcagcaaaaggtcttgcttttcttcacgaggaagcagaaagaccagtgatataccgtgatttcaaaacatccaacattcttctagatgcggattacaatgccaaactttctgattttggacttgccaaagatgctccagagggcgacaagacccatgtttctactcgtgtcatgggaacatatggttatgcagctccagagtatgtgatgacaggacatttgacatcaaagagtgatgtctacagtttcggtgtagttctgcttgaaatgatgacaggtaggagatccatggacaagaaccggccaaacggtgaacacaaccttgttgagtgggcacggccacatttgggtgaaagaagaaggttttataaattgatagatcctagacttgaaggccatttttctataaaaggtgcacagaaagctgcacagctggctgcacgatgccnttagccgggatcccaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="17181" stop="21229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17481" g_stop="17570" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17676" g_stop="17811" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="226" r_length="136" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19969" g_stop="20105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="363" r_length="137" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76">
            <donor d_prob="0.664" d_score="0.92"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20182" g_stop="20305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="487" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20306" i_stop="20676" i_length="371">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20677" g_stop="20930" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="742" r_length="255" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E261546" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17481" e_stop="17570"/>
          <exon e_start="17676" e_stop="17811"/>
          <exon e_start="19969" e_stop="20105"/>
          <exon e_start="20182" e_stop="20305"/>
          <exon e_start="20677" e_stop="20930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAAACCTTAATTCTGTGTTTATCTTCTTTTTCTTTTTACTTTCATTTTTGGTTTGTATTAAGTGTTGTCCATTTGGCAGGCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGAGTATGTAACCGACTCTTCATTTTTGTATTCTTGAACATATTTGCTTCTGATCAATCTTTGAAAAAGAAAAAAACATTGTTAGTGGATCTTCGAGTAATATGTTTTGTCCATATTATTGAGCATTTTCTGAATACACTAGCTAATCTTGCAATAGTAAGTGGGAATACCAACTATTAACATGCATATTGCTTGTATCATCTGTTAGCATTGCTTTAGTTCCATAAGGTCTCTTCCTGCGGAATAGAACTTGGGTTCTCTCTAAGCTCTATAGCTATTGTAGCATGCGATAAATCTATTTTTAATAGAGGATTTACTATGATGTATGCAACTAAGCCTTGTAAATTTTTGAAATCCAAAATGGTATATGGGATATCCCCATTAGCAAGGGAACCATTGATGTGATGCAGGATTTACTCATTGTTTATTTCCAGATTGAAGTGATGTAGGATTTACATAGAAGTGTTAGTTGGGTTGTTGGTTTTTCTTGTGTGTGTTAATGCTAGAATAAAGCCATGGGCAGCTCAAGGACCTATGTGATATATGATTTAAGGAAGAAACTTTATAGTTTACTTTGTTATTTGCTTCTGGAAACTTATCATTTCTGTTAGTCCATCATTAACATTTGGTAGGTTTAATTACCATGTTGCAAGACAGGAAGAAGAATGTGTCTCGGTTGATTTAGTAGGATAAAGAAGCTTGAATGAAGATTTTTCATCGTTTTCTAGATTTTCTTCCCATAAAATGGTAGAGAAATCTTTTACTGGGATTTACATGTAGCACTTATGTGAGGTCACTTTTTGATTTGAAGCACTTTTTACCATTTTGGACATGTCATGGACAATGCCTCACTCAGTATTGGATTTCTTATAGCTGGTCTAAATAGGAAGATTCAAAAGCTTTGGAATACTTTCTCAAAAAAAAAAAAGGCTTTGGAATACTATCCCAATCTGTCACTTGGACAATTTTTGGATGGAAAAAAAAAGAGTAGAGTTTTCGAAGGCAAACATAGCAGCATACATACCATTAAACAAAATTGTATATTTTTGCTAGCTTTTTGGTGCAACCTGGCCATTGTAAAATGGAGTGGATACCATGATATGATTGAGGCCTTACAGACTTTTGTAATTTTTAGTGCTGTTTTTACATTTATAGCAACTGTCTCACTAATGTTATTGACTCCTATGATAACCTTCAAACAGATTACTTCCATAAACCTAGTCATATGCCCAAAAGAGATGTGCTTTTCATGTAATATACTAATATATCTGTAGAAGTATTCACATCTCTAACTTGTTTTGTACACCTGACCTGCCAAAGAGATCTATCAAATTTTTTTAGTTAGTGGGTATATCCTACCTTTCTGGGAGGATTATATGATTGTTTCACCTACACGCTCTTGATTATGACCATCCCTTTTATGTTAATTGACTCAAGGTAGCACGGTATTCAATTTAGGGATGTGATCAAGTATTCTAAACCCTCAATTGAGTAGGACCCTGGAGTGGTTTGAAGTGATTGTGCTGCTCTTTCTCTTGTTTTGCTCTTCCTCTTTAAAACATTTCAATGGTGTATCAAGTCAAATGTGGTTCTTTAGAGTTATAACTGCCTGCAAACCAAGTATAAATAATGCCTAAATAGTGAACGCACTAGAGGCTCCTCCTTTGAAATATGTTTCAGTTCTAAGCGATAATCATGATAAGTGATGATGTTTGTTGTATATAACTGAGCTCACAACTCAAGGTTCAACTTCAGTTTTCTGGGGAGACTGTAATACGATGAGCTCGGCCCGGAGCCCAGGCATCAAGATTCTCTACTACACACAATGCATAATGCACTGACTTCAATTTCTATGTAGCTATGGGCTGGAAAGATGAAAGTGAAATTCGGGTGGGGATGGTTGTTTCATGGGGAAGATAAATGATACTATCATACTTATATTTCCTGGTTTCTCTTTTTTCGTGCTCATTAGAATAACCAAAAGATGAAGCTTTTATAATTTTGCTTTTTCCCCCCTTAAGAATGCTGTCTGAATAAGTCTAGTGACAGTGCACTACTCTTCTGAAATTTTAGTGCCATTCATTATGTTACTATATTGTACTTTCTGCAGACAATCTTTATGTTCAACATAGTCTCTGCTAATAATGCTTTTATGTGCAGGATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCGGTATGTTTGAATACATTGGAAAAAAGAAAGACGTTTCCCCTTTGAGTTTTTTTATTTCTAAATACTCTTCTCTCAGGATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAGGTAGGGCTGAGATCTCGTAATTCCTACATTAGTTACCCTTTTGGTCGATTACAGTTTATCTGTATTATGTGGCAGTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTTAAAAGACCAATTTTTCTTTGAATAGTTAACTCCAGCTTATCTATATTATGTGGCACTTCAAGTCTAATCTAGTTGGAGACTATTCTGCTCAAAACACCAAACTTGCTTTGAAAACCTTTCTGTACAAACTCCATAACCTGAGTCACAGACTCACAGTTGAAGAGTTTTCAATATGTTTGTTATTTGTTGACTAAAACTTTCATTGGATGGCTGATAAGTACCTCTCTTACTGATTGTAATTTGTCCTACTCATTTGTCTCAGGGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCC-TTAGTCGTGATCCCAAAGTT</genome_strand>
        <mrna_strand>GGGACGGCACCTGTTAAACCAGGAACGGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTACAGGGTCACAAAGAATGGCTG.........................................................................................................GCGGAAGTAAATTTCCTTGGCGATCTCATTCATCCCAATTTGGTTAAACTAATTGGTTACTGTATTGAAGATGATCAGAGGTTGCTGGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAACCATCTGTTCAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCTGCCTCTTCCGTGGTCCATCCGCATGAAGATAGCATTGGGTGCAGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTGATATACCGTGATTTCAAAACATCCAACATTCTTCTAGATGCG............................................................................GATTACAATGCCAAACTTTCTGATTTTGGACTTGCCAAAGATGCTCCAGAGGGCGACAAGACCCATGTTTCTACTCGTGTCATGGGAACATATGGTTATGCAGCTCCAGAGTATGTGATGACAG...................................................................................................................................................................................................................................................................................................................................................................................GACATTTGACATCAAAGAGTGATGTCTACAGTTTCGGTGTAGTTCTGCTTGAAATGATGACAGGTAGGAGATCCATGGACAAGAACCGGCCAAACGGTGAACACAACCTTGTTGAGTGGGCACGGCCACATTTGGGTGAAAGAAGAAGGTTTTATAAATTGATAGATCCTAGACTTGAAGGCCATTTTTCTATAAAAGGTGCACAGAAAGCTGCACAGCTGGCTGCACGATGCCNTTAGCCGGGATCCCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544242" ref_strand="+" ref_description="SGN-E544242 [TUS-66-H15](-)">
      <seq>ttgaaatgataacaggtaggagatcgatggacaagaaccgaccaaatggggaacacaaccttgttgaatgggcacggcctcatcttggtgaaagaagaaggttttacagattggtagaccctagacttgaaggtcatttttcaataaaaggtgctcagaaagctgcacagttggctgctcgttgccttagtcgtgatcccaaagttaggcctatgatgagtgaagtggtagaagccttgaagccattaccaaatcttaaagacatggccagctcatcctactatttccagacaatgcaagcagaccgagttggatcaagtccaagtaccaaaaatggcgttaggacacagggatcattctcgaggaatggacaacaacatcctagaagtctttcaatcccaaatggttctcatgcttctccataccatcaacagtttcctcagaactcaccaaaaccaaacggcaaaacttagtattattggattgacaagtaatctgtttctatcattcttttcgttttctctccagctatgaatatattttgttggccacctcccgttttgtcgttggatgaactggcaaaagggaaggagtgcacaattaacttaagttgtgatctttgaaaatgctgaactcccacttgaaaagaatgtattgtaagcggagctcaagtccatggagtaaatattgtgtcgaatgtacctctccttcagctgattttcgcaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="20425" stop="94151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20725" g_stop="21450" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21451" i_stop="22842" i_length="1392">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22850" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="734" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22851" i_stop="23114" i_length="264">
            <donor d_prob="0.655" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23115" g_stop="23144" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="764" r_length="30" r_score="0.567"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E544242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20725" e_stop="21450"/>
          <exon e_start="22843" e_stop="22850"/>
          <exon e_start="23115" e_stop="23144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAAATATTCCTATTTTCGGCCTATATTTTGATCTTGTTCCTTTTAGGCCTGAAAACGTTTAATGTTTGTTCATATATTTTTCAACCTTACATATCAATATTTGACTGTTGCCATAAGTTTGGGATAACTTACAAAATTTTAACATTTTCTCATAACATCATATGATTTTAGAGGTTGCATAAGTTCAAGAGAAATGATGTATGCAACATAGTCTATTATACTCTATACTTGAGTTTTTTTCCTTCAAGGACATGACTACTACCAAAGGAAACCTTTGGTTTGGAGCCATCGATTCTTGTGTTGAGATAGGTTGTCTATATTGCACCCTTAAAAGATAGTGACACGTGAATCTTAAATTCGGTAAGAACACGAGATGTTTTGAACATCGTAAATCTATTGGTGGTGTTGTTTTTGACCTCACACTTGTCCAGTAGAAGGTAGAGTTATCAAAAACCAATGTATCCTTAGCCTGCTGATCACGTAAGTGCATACCTTAATATATATATATGTTGTATCTTTCAAACAACTAATTTTTGTCGAGAGAAATCATAAGATGGATAGCATTGACAAGTTTATTTTTGCACTGACTACATCAATATTGGTGTTTAATTAGTCCATCTATCTACTTTATCATCCAAACTAATTTATTGATATATCAGGTGTATATGCCAAGAGTAAATTTGTGATAGTTACAGATAATAATACTTTCAGAGCTACAATATCATCTTCTTTCAACAACAGTTTAATCTTGGAGTAGTCATCCAGCTGAACATGCCAAGAATTAGCTCCACAGAGTCGAAACATCCAACTGCTTCGCGCTTACTTTCATGCAGCACGACGAGTTAACTGATCCTTGGATGTACTCTCAAATATCTTGTCGGCATTTCCAACTTCAAACCCGTCCCGCCTGTGAAACTCCTCCACCTAAAGAAAGTATCAAAACATAGTTGATCAAAGAGGCGTTTCATCGAAGTGCAAAAAGTCTAGTTTACGTTCAAGCTACCTTACTATTGGAAAAATCATAAAATTGTATACTCCCATGTGGTTGAAAGTAGAACATGTGGATTTAAACTACGCAAAATGCAGCACCGTGAATTTAGTTAAGTCCCAAGAATAGAACCTAAACCTCGAGACTACTTCGAATTAAGATATTACAATAAGCACGTGTTCGAATCCAATCACAACACATGATATCTTTTTTAGTTTTTCAACTCAGCAGACAAATGTTTTCCATTTTAAAGCTTAAGAGTAGGTAGATTTTATTCAATTACATTGCCATACAAGTATTTGAACAACCATAAAGGGTACATGACACGGCGATTATTCTCGTCTATGGTTATGAACAGGTGTTGGACGAACCAAGTCCATGTTATCGATTTATTGCTTTTACTGCAGATAAATATGCAAGAAAATTGAGGGATAACTGGAACTGACCTTTTCTGCTGGTAAATCTTTATATTGCGGTAGTACAAGTCTCTCAGCAAATTCAATGTATGAACAAGGTACTGCTTCTGTAATGCCGTCTGAAAATTCGAAAAAGGTAGAATCTGCTACAGTTGAACTTTGCAGCAAAAGACCATCAGGGCTCACTGGAAAGAAAGAGAATAAATCAAGACTTCTTTGCAATATCAGGAGACCATTTTAAAAGAACAGTTGTCGCTTAAAAGAAACGAGATTTCAAAATCAACGGGTTCCCT</genome_strand>
        <mrna_strand>TTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA........................................................................................................................................................................................................................................................................AAAGAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391810" ref_strand="+" ref_description="SGN-E391810 [TUS-24-H23]">
      <seq>aatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24181" stop="8812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23881" g_stop="23764" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="273" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22065" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="580" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22064" i_stop="21496" i_length="569">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21495" g_stop="21458" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="618" r_length="38" r_score="0.553"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E391810" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23881" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22065"/>
          <exon e_start="21495" e_stop="21458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGTTGTTTGAAAGATACAACATATATATATATTAAGGTATGCACTTACGTGATCAGCAGGCTAAGGATACATTGGTTTTTGATAACTCTACCTTCTACTGGACAAGTGTGAGGTCAAAAACAACACCACCAATAGATTTACGATGTTCAAAACATCTCGTGTTCTTACCGAATTTAAGATTCACGTGTCACTATCTTTTAAGGGTGCAATATAGACAACCTATCTCAACACAAGAATCGATGGCTCCAAACCAAAGGTTTCCTTTGGTAGTAGTCATGTCCTTGAAGGAAAAAAACTCAAGTATAGAGTATAATAGACTATGTTGCATACATCATTTCTCTTGAACTTATGCAACCTCTAAAATCATATGATGTTATGAGAAAATGTTAAAATTTTGTAAGTTATCCCAAACTTATGGCAACAGTCAAATATTGATATGTAAGGTTGAAAAATATATGAACAAACATTAAACGTTTTCAGGCCTAAAAGGAACAAGATCAAAATATAGGCCGAAAATA</genome_strand>
        <mrna_strand>AATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712318" ref_strand="+" ref_description="SGN-E712318 [FB04CA11]">
      <seq>gaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25202" stop="21678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24902" g_stop="24867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="158" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="322" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="477" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22371" g_stop="21973" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="876" r_length="399" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E712318" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24902" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="21973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</genome_strand>
        <mrna_strand>GAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268557" ref_strand="-" ref_description="SGN-E268557 [cLEI-13-O20]">
      <seq>caatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="23208" stop="21678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22908" g_stop="22882" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22371" g_stop="21977" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="422" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E268557" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268557" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22908" e_stop="22882"/>
          <exon e_start="22371" e_stop="21977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</genome_strand>
        <mrna_strand>CAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375474" ref_strand="+" ref_description="SGN-E375474 [TUS-34-J4](-)">
      <seq>actactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagatagatggactaattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24235" stop="21697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24198" g_stop="24187" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="176" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="331" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22371" g_stop="21998" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="705" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E375474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24198" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="21998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTT</genome_strand>
        <mrna_strand>ACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276215" ref_strand="-" ref_description="SGN-E276215 [cLEN-21-B20]">
      <seq>aaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24105" stop="21765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23805" g_stop="23764" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="197" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22060" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="509" r_length="312" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E276215" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23805" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGAC</genome_strand>
        <mrna_strand>AAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398089" ref_strand="+" ref_description="SGN-E398089 [TUS-42-N12](-)">
      <seq>ttttgatgcaaagatcaacggtagcagattgtacctttttagaattttcagacggcatttcagaagcagtgccttgttcatacattgaatttgctgagagacttgtattaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcaggacgggttggaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgtggaaagaagatgatattgtagctttgaaagtattattatctgtaagtatcacaaatttactcgtggcatatacaccggatatatcaataaaatagtttggatgataaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="23321" stop="21765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23021" g_stop="22882" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22371" g_stop="22060" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="452" r_length="312" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E398089" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23021" e_stop="22882"/>
          <exon e_start="22371" e_stop="22060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGAC</genome_strand>
        <mrna_strand>TTTTGATGCAAAGATCAACGGTAGCAGATTGTACCTTTTTAGAATTTTCAGACGGCATTTCAGAAGCAGTGCCTTGTTCATACATTGAATTTGCTGAGAGACTTGTATTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCAGGACGGGTTGGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTGGAAAGAAGATGATATTGTAGCTTTGAAAGTATTATTATCTGTAAGTATCACAAATTTACTCGTGGCATATACACCGGATATATCAATAAAATAGTTTGGATGATAAAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746564" ref_strand="+" ref_description="SGN-E746564 [GI|47104186]">
      <seq>aaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26776" stop="21765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26476" g_stop="26187" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="440" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="656" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="778" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="942" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="943" r_stop="1097" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22371" g_stop="22074" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1098" r_stop="1395" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1396" polyA_stop="1407"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E746564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1395</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26476" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</genome_strand>
        <mrna_strand>AAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378527" ref_strand="+" ref_description="SGN-E378527 [TUS-24-H23]">
      <seq>atcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgatnnnnaanaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24180" stop="21777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23880" g_stop="23764" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="272" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22074" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="570" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="631"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E378527" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23880" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAA</genome_strand>
        <mrna_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247687" ref_strand="+" ref_description="SGN-E247687 [cLEF-42-M7]">
      <seq>atcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24180" stop="21790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23880" g_stop="23764" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="272" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22090" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="554" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E247687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23880" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAAT</genome_strand>
        <mrna_strand>ATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213429" ref_strand="+" ref_description="SGN-E213429 [cLEC-71-B21]">
      <seq>agaagtagagaaagaaatttcatgtttatcctggctaacttctatttttctctagtgaaggtcacttctaaataatctcatagatggtcagctttttatttacacggaacttcattttttttcttgtaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccnaagataaactgntgntgaaagaagatgatattgtagctctgaaagtattattatctggtactatcacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24737" stop="21827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="24187" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="570" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22371" g_stop="22125" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="817" r_length="247" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E213429" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATT</genome_strand>
        <mrna_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCNAAGATAAACTGNTGNTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGGTACTATCACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260569" ref_strand="-" ref_description="SGN-E260569 [cLEG-54-L23]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgtgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24222" stop="21873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22173" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="523" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E260569" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTG-TGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262965" ref_strand="-" ref_description="SGN-E262965 [cLEG-59-E15]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgtgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24222" stop="21873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22173" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="523" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E262965" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262965" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTG-TGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254405" ref_strand="-" ref_description="SGN-E254405 [cLEG-27-K12]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24222" stop="21873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22173" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="524" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E254405" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254405" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255641" ref_strand="-" ref_description="SGN-E255641 [cLEG-36-L3]">
      <seq>actagtctctcgtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24222" stop="21873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="170" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22173" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="524" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E255641" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255641" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>CTCTCGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263459" ref_strand="-" ref_description="SGN-E263459 [cLEG-69-K23]">
      <seq>ttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcatctggatgactactccaagattaaactgttgttgaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24201" stop="21873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23901" g_stop="23764" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="293" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22371" g_stop="22173" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="492" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E263459" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263459" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23901" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</genome_strand>
        <mrna_strand>TTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCATCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213489" ref_strand="+" ref_description="SGN-E213489 [cLEC-71-H18]">
      <seq>agaagtagagaaagaaatttcatgtttatcctggctaacttctatttttctctagtgaaggtcacttctaaataatctcatagatggtcagctttttatttacacggaacttcattttttttcttgtaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatggtcagctggatgactactccagattaaactgttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24737" stop="21880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="24187" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="570" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22371" g_stop="22180" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="761" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E213489" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTG</genome_strand>
        <mrna_strand>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGGTCAGCTGGATGACTACTCC-AGATTAAACTGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274502" ref_strand="+" ref_description="SGN-E274502 [cLEN-11-F5]">
      <seq>ttgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctacgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcatgttagtccagaagctcaggaaatagtcaaaaagtccactaatatttcggactggggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25366" stop="22599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25066" g_stop="24867" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="322" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="486" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23036" g_stop="22899" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="624" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E274502" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25066" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAG</genome_strand>
        <mrna_strand>TTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTACGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCATGTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGTCAAAAAGTCCACTAATATTTCGGACTGGGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249854" ref_strand="+" ref_description="SGN-E249854 [cLEF-57-M16]">
      <seq>caaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25354" stop="22626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25054" g_stop="24867" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="310" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="474" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23036" g_stop="22926" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="585" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E249854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25054" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTG</genome_strand>
        <mrna_strand>CAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274456" ref_strand="+" ref_description="SGN-E274456 [cLEN-19-K12]">
      <seq>cattgattttatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25368" stop="22638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25068" g_stop="24867" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="488" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23036" g_stop="22938" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="587" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E274456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25068" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACA</genome_strand>
        <mrna_strand>CATTGATTTTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325658" ref_strand="+" ref_description="SGN-E325658 [cTOC-15-M19]">
      <seq>aaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcngaagaaaatggtttcaatttgaactctgaagggggtttttctaaaggtgagccctgatggtcttttgctgcaaaagtcaactgtagcagattctaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26560" stop="22682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26260" g_stop="26187" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="224" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="440" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="562" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="728" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23036" g_stop="22982" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="783" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E325658" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26260" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATC-GAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGG-TTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTT</genome_strand>
        <mrna_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCNGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAAGTCAACTGTAGCAGATTCTACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252843" ref_strand="+" ref_description="SGN-E252843 [cLEG-16-G10]">
      <seq>gtgctgctgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgatcctatgtcaaagatcttcttatattttggttactaacgaccagaggagctgatattccctgctaaaaaattgatagctttctggttttctcctcctaacgtgtcaacttacagtcgtgggagcggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccataagctcacgaaattattaaaaagtccactaatatttctcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttcacatgggaaaaaccctcgtattcggaatttcaactactgactagggagagtgagtatgctgcctgcacactcgtcaatggatatgcattgaatcatgtttccatatctacccatcggctggcatccaatctgagaagcattggaaatctaaatcaatctatcgcagaaaatggtttcaatctgaactctgaagggggttttctaaaagtgagccctgatggtcttttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25540" stop="22713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25241" g_stop="25189" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="269" r_length="216" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="391" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="555" r_length="164" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23036" g_stop="23013" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="579" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E252843" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25241" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="23013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGC</genome_strand>
        <mrna_strand>GTGCTGCTGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATCCTATGTCAAAGATCTTCTTATATTTTGGTTACTAACGACCAGAGGAGCTGATATTCCCTGCTAAAAAATTGATAGCTTTCTGGTTTTCTCCTCCTAACGTGTCAACTTACAGTCGTGGGAGCGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCATAAGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTATTAAAAAGTCCACTAATATTTCTCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTCACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGACTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGCACACTCGTCAATGGATATGCATTGAATCATGTTTCCATATCTACCCATCGGCTGGCATCCAATCTGAGAAGCATTGGAAATCTAAATCAATCTATCGCAGAAAATGGTTTCAATCTGAACTCTGAAGGGGGTTTTCTAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201597" ref_strand="+" ref_description="SGN-E201597 [cLEC-11-O7]">
      <seq>ggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25376" stop="23459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25076" g_stop="24867" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="332" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="496" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E201597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25076" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG</genome_strand>
        <mrna_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720369" ref_strand="+" ref_description="SGN-E720369 [FC10CE06]">
      <seq>gagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttaaattttggttacaaacgacgagaggagctgaaattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccaaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaaacattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26757" stop="23471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26458" g_stop="26187" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="422" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="638" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="760" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23927" g_stop="23771" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="917" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E720369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26458" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTT</genome_strand>
        <mrna_strand>GAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAAATTTTGGTTACAAACGACGAGAGGAGCTGAAATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCAAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAACATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209371" ref_strand="+" ref_description="SGN-E209371 [cLEC-53-E4]">
      <seq>ggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25376" stop="23482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25076" g_stop="24867" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="332" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23782" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="478" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E209371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25076" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTG</genome_strand>
        <mrna_strand>GGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255798" ref_strand="+" ref_description="SGN-E255798 [cLEG-35-E7]">
      <seq>tttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcacgagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaactttcactcgtgggagtggggttcacgggccattgccaacaatatttatatccgaacttcttgttgatcagcttagtccagaagctcacgaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26550" stop="23917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26250" g_stop="26187" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="214" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="430" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24217" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="522" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E255798" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26250" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACC</genome_strand>
        <mrna_strand>TTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCACGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTTCACTCGTGGGAGTGGGGTTCACGGGCCATTGCCAACAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334446" ref_strand="+" ref_description="SGN-E334446 [cTOD-23-K3]">
      <seq>aaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatgggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26560" stop="23921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26260" g_stop="26187" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="224" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="441" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24221" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="529" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E334446" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26260" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCAT-GGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAA</genome_strand>
        <mrna_strand>AAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252046" ref_strand="+" ref_description="SGN-E252046 [cLEG-8-F11]">
      <seq>aaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggnggtaaaaatttggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataattcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26699" stop="23931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26399" g_stop="26187" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="363" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25088" i_length="101">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25087" g_stop="24867" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="584" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24231" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="663" r_length="79" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E252046" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26399" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25087" e_stop="24867"/>
          <exon e_start="24308" e_stop="24231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAA-TCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTG</genome_strand>
        <mrna_strand>AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGN.....................................................................................................GGTAAAAATTTGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATTCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332024" ref_strand="+" ref_description="SGN-E332024 [cTOD-16-F22]">
      <seq>aaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcangaaataatcaaaaagtacactaatatttcgcactgtggaaaaagatatgctgcacttgcaagtgcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26777" stop="23937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26477" g_stop="26187" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="441" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="657" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="729" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E332024" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26477" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGG</genome_strand>
        <mrna_strand>AAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAN..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAAGATATGCTGCACTTGCAAGTGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252590" ref_strand="+" ref_description="SGN-E252590 [cLEG-20-A24]">
      <seq>gtcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaagagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaagtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26701" stop="24587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26402" g_stop="26187" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="366" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24887" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="562" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E252590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26402" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</genome_strand>
        <mrna_strand>GTCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAAGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAAGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249849" ref_strand="+" ref_description="SGN-E249849 [cLEF-57-K16]">
      <seq>tcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcacgagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26701" stop="24587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26401" g_stop="26187" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="365" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24887" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="561" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E249849" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26401" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</genome_strand>
        <mrna_strand>TCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCACGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378215" ref_strand="+" ref_description="SGN-E378215 [TUS-39-N11]">
      <seq>atcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagatttcctgctaagaaagtgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtgggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26691" stop="24633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26391" g_stop="26187" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="355" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24932" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="506" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E378215" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26391" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTC</genome_strand>
        <mrna_strand>ATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTTCCTGCTAAGAAAGTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724163" ref_strand="+" ref_description="SGN-E724163 [FC23BA06]">
      <seq>gaaacccttgatcttaataacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaaaattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaacccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctaatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagtccttcttaaattttggttacgaacgacaagagaagctgagattccctgctaaaaaattgaaagctttctggttttctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26774" stop="24668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26490" g_stop="26187" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="455" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24968" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="570" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E724163" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26490" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATC-AAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTC</genome_strand>
        <mrna_strand>GAAACCCTTGATCTTAATAACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAAATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAACCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTAATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTCCTTCTTAAATTTTGGTTACGAACGACAAGAGAAGCTGAGATTCCCTGCTAAAAAATTGAAAGCTTTCTGGTTTTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201922" ref_strand="+" ref_description="SGN-E201922 [cLEC-7-C15]">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26804" stop="24697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26187" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24997" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="554" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E201922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAA</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201942" ref_strand="+" ref_description="SGN-E201942 [cLEC-7-K19]">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26804" stop="24744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26187" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="25044" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="507" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E201942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="25044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTC</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331914" ref_strand="+" ref_description="SGN-E331914 [cTOD-16-G23]">
      <seq>taaagcccaattaattaacaccaaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtggtggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgctctgctgatgatgatcaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26751" stop="24921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26451" g_stop="26187" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25221" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="383" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E331914" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26451" e_stop="26187"/>
          <exon e_start="25338" e_stop="25221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTT</genome_strand>
        <mrna_strand>TAAAGCCCAATTAATTAACACCAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGGTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGCTCTGCTGATGATGATCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291395" ref_strand="+" ref_description="SGN-E291395 [cLET-2-H2]">
      <seq>aaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26775" stop="25913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26475" g_stop="26213" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E291395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26475" e_stop="26213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAG</genome_strand>
        <mrna_strand>AAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338307" ref_strand="+" ref_description="SGN-E338307 [cTOE-13-H21]">
      <seq>tcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcaaagtttttcaatgttatctgcttctaaacctcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26796" stop="25917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26496" g_stop="26217" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E338307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26496" e_stop="26217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAAT</genome_strand>
        <mrna_strand>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAAAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549315" ref_strand="+" ref_description="SGN-E549315 [TUS-69-E14]">
      <seq>atgattttcaggtgagatctactgatcggaaaaaatgttgacagttactatagagcctctcgtcggccattatctccggcgaagcccaaagctatatccaaatcagaagaaaacctctcatttttctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcaaagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcaaattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggagtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgcaattgaaactcctttgcaaggagacacatttcaagaggtgaagatcgacataagttctaagtggtctatagcagctataaattttgtgttgaaggatgaggaaactggagtttggtatcagcacagaggtcgggacttcaagattcctcttgttatctgccttgacgatgatgctaatatcgttggtgttaaaaaggagtcgaacatatggtcaggatcactaggaaagctgtccaacatactccttaatgcagaagcttctccttctaaaggggaatcaagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29656" stop="32697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29956" g_stop="30256" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="31032" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="432" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31289" g_stop="31343" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="487" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31496" g_stop="31597" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="589" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31598" i_stop="31759" i_length="162">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31760" g_stop="31880" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="710" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443">
            <donor d_prob="0.293" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32324" g_stop="32397" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="784" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E549315" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29956" e_stop="30256"/>
          <exon e_start="30902" e_stop="31032"/>
          <exon e_start="31289" e_stop="31343"/>
          <exon e_start="31496" e_stop="31597"/>
          <exon e_start="31760" e_stop="31880"/>
          <exon e_start="32324" e_stop="32397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAGGTGAGCTTCTGTGCTTAGATGTTTCAACTTTCTTCTGTATGTGTTATGCTGCTAACGAAGCATTCAACAAAAAGCATATTCATGTATGCTGCTGATCTGATCGCTTTAGTTATTACTTTTTTGGTGGTGATGTTTAGGTGTTGGTTTATTTTGATGATGCAGGATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAGGTTGTCCAGGGTACTTTTTGCTGTGAAATGCATACCAAATGTTCATATTTCTTGCCTCTCCCTTACATTCAATCCATGTCATCTCTTTCATGTTAACCTCACTGACTTTCTCCAGAGAAGAAAATGACTTAGATATGTTGAAACATATCTTTTCTAACAATGAAGATTGTTCACCCAGGCTAAAGAAGGGTTATATCTGTTTATGAAATATCTGTTTTTGCACTACTGTACTGTTGTGAATTTATGTACTTAACAAGTTATTTTGTATTATAATAGTTCAATTACTGTAATAGTTTCTAATCAAACCATTCCTCTGCTTAGCTGATATCTCAGCATGGATAGAAAGATCCTTAATGTCTTATCTTATTTGAGTAATTCTGTGACAAATTCAAGTTGTACTGAGAAAAGAAAGTAGAAGTTAAGTTGCTCTTCTTGCATTGCAGGATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</genome_strand>
        <mrna_strand>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTTGACAGTTACTATAGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAAAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAAATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGAGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG..................................................................................................................................................................GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGTCGGGACTTCAAGATTCCTCTTGTTATCTGCCTTGACGATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTAGGAAAGCTGTCCAACATACTCCTTAATGCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355739" ref_strand="+" ref_description="SGN-E355739 [cLHT-18-J1]">
      <seq>tgattttcaggtgagatctactgatcggaaaaaatgttgacaggtactatagagcctctcgtcggccattatctccggcgaagcccaaagctatatccaaatcagaagaaaacctctcatttttctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggagtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29657" stop="31616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29957" g_stop="30256" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="31032" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="431" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31289" g_stop="31316" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="459" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E355739" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29957" e_stop="30256"/>
          <exon e_start="30902" e_stop="31032"/>
          <exon e_start="31289" e_stop="31316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATG</genome_strand>
        <mrna_strand>TGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTTGACAGGTACTATAGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGAGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365752" ref_strand="+" ref_description="SGN-E365752 [cLPT-8-H24]">
      <seq>aggccggcgatgcccattgtctatatccaaatcagaagaaaacctctcatttttctctaaattactccaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagggctagttccaccgatgctgtcgtcattgagacgtcggagcagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggggtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29731" stop="31651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30028" g_stop="30256" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="31032" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="361" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31289" g_stop="31343" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="416" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31496" g_stop="31503" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="424" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E365752" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30028" e_stop="30256"/>
          <exon e_start="30902" e_stop="31032"/>
          <exon e_start="31289" e_stop="31343"/>
          <exon e_start="31496" e_stop="31503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGGCGAAGCCCAAAG-CTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGC</genome_strand>
        <mrna_strand>AGGCCGGCGATGCCCATTGTCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTACTCCAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGGGCTAGTTCCACCGATGCTGTCGTCATTGAGACGTCGGAGCAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355740" ref_strand="+" ref_description="SGN-E355740 [cLHT-18-J3]">
      <seq>caaatcagaagaaaacctctcattggtctctaaatttctctaggaggccactctccggtaccgcaactttgagattctgcgagtatcggcgtcgccggacggtacctatcagagctagctccaccgatgcttccgtcattgtgacgtcggaacagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29754" stop="31247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30054" g_stop="30256" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="30947" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="249" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E355740" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30054" e_stop="30256"/>
          <exon e_start="30902" e_stop="30947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAG</genome_strand>
        <mrna_strand>CAAATCAGAAGAAAACCTCTCATTGGTCTCTAAATTTCTCTAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGAGTATCGGCGTCGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTTCCGTCATTGTGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710945" ref_strand="+" ref_description="SGN-E710945 [FA57CA01]">
      <seq>aaatgagataaggagtttggtgagtgacatttcttctgaaaagagccgaaagacaaaaaatagggaaacacaggaaaccattcttcaagaaattgagaagctggctgctgaagcttatggtatattcagaagttcaatcccaacaatactagaaactgttgtttctgactctgaggttgtacaacctgacgtgaaagtaacttcaggaactggtacaggatttgaaattttgtgccagggttttaattgggaatctcataaatccggaagatggtacaaggagctgcatgataaagctgcagagttatcttcacttggtttcagtgtgatctggttacctccaccaactgactcagtgtcgccagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacagtaaagaaattccatgaagtgggcatcaaggttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtgcagttgttgcagatgatccacatttccagggaaggggcaacaaaagtagtggagataatttccatgctgctcctaacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggctgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaaacaactgaaccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35548" stop="40173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35847" g_stop="36251" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36892" g_stop="37081" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="595" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38724" g_stop="38830" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="702" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39780" g_stop="39873" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="796" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E710945" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35847" e_stop="36251"/>
          <exon e_start="36892" e_stop="37081"/>
          <exon e_start="38724" e_stop="38830"/>
          <exon e_start="39780" e_stop="39873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAGGTGTGTATTTCTCTCTTGATTTTTCTTTGCTGTTGTACCAGCAAAGGAAATTTTTTGGTGATGCTTGTCCTTCACCAGAAGATTAGAAATAATCACAAATTCAGAGAGGATGCAGAGTAGCAAACTGGAATATTTGAGAATTTGCTTGTCCCCCACCGGATGAATAGTATATCCGTTCCTTACTTTGTAATTTGAAATCAATTGCAGTGAGATATTAATCCAGAGAATTCTTTTTACATTAAAATATTTTTAATATGTCAAAATAAGGTTTTCCAAAAGGGTTGTTGGAAAAGGTGAAAGGTCAAGGATAGGACTAATTGAGATTCTTGCTCAAACTAACATTATGGTTCTTTAGCCTTCTAATATGCTAACCTAGAATCCGTGTGCGCGATATATCATTTAGAATACATTAAGATCTTGAAAACTAAATGAAGCACTAAGAACACTATATTTGCATTGTTCACATTTTTTATCCTCAAATATTTCATCTTAGTTACATTACTATCTCTTTCATAATAAGGATATATTTGCCTTTTTACGCTAATACAAAACAGATCCTTGCTTCTCATGGTCCCTCTCCGTTCTTTCCTCTTTTGCCATTCCTCTCAATTTCGTTCTTCAGAAAAGCCTTCCTGTCAATCTCTTTCTATTGTCTTCCGCATTTGATCTCCGGCATCTGCTTCCTTGTTTTCCTATGCCATTTCCTTTTCTTCTGGGAATAACTTCATCATTAGATCGGTGGTGCTATCCATTTAATATACTGCCATCGTACGGTGGAACTTCATTGGTACCACCAACACCAGCTTCAATTGTGGACTAGTAGCGGGAGCCCATGGCTGAACCTTTTTCTTTGTACATTTTTTAACATTCATTGCTTGCTGTAGTCTTTGAAATAATCACAAATTTGTGCAATTGGAAATGGTCCAAGGCAAAAGAATGATTAACGTGTTTGCTATCATTGGATCATTGATACTCAAAATTATCTAGTGAGCGAGAAATCTGAAAAGAAGAAGAGAGTAACTAAGGGGAAACAGGAATGAGAAAAAAAGAAAACTTAAGAGGAAAGAAGTAGGAGATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTAACTTTAAGGGAAATTTGAGAAATGAAAAAATTGAGACAATGCTAACCTACTATGGAAAAACCCATAAATATGGTTTAAACTCCTTGGGGGTTGGGTGAAGCAGACAAGAGAGGCCAAAATCATCATCTTTTACCCATTGGCTGGTGCTCTTATCTTCCTTTCGGAGTGCATTATCTGATTTCTATTTGCTTACTTCCAAAAGTAGACGGCATAAGTGAGGGGAGGTACACTTTCCTATACTCGTTTGATTTTCATTTGTGCTTTTAAATTGGCTGGCTTACTCTTTAAAATATCTATTAATCGCTAAAGCAATGTTCTGCAACTCCTTTACTATGGTTTAGCCAGAATAACTTTGTGGCTAGCATGACATTTTTGCTTCCCTTTCTCTTAATGAGATACGGACTGGTTTTACAAGATCTGTTTAACCAGATGTCTGAACTACCTTCTTTTTTCTACAGGGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTAC</genome_strand>
        <mrna_strand>AAATGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCGCCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAACAACTGAACCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255721" ref_strand="+" ref_description="SGN-E255721 [cLEG-36-H15]">
      <seq>aaacacaggaaaccattcttcaataaattgagaagctggctgctgaagcttatggtatattcagaagttcaatcccaacaatactagaaactgttgtttctgactctgaggttgtacaacctgacgtgaaagtaacttcaagaactggtacaggatttgaaattttgtgccaaggttttaattgggaatctcataaatccggaagatggtacaaggagctgcatgataaagctgcagagttatcttcacttggtttcagtgtgatctggttacctccaccaactgactcagtgtcaccagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacagtaaagaaattccatgaagtgggcatcaaagttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35612" stop="37352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35912" g_stop="36251" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36892" g_stop="37052" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="501" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E255721" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35912" e_stop="36251"/>
          <exon e_start="36892" e_stop="37052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTG</genome_strand>
        <mrna_strand>AAACACAGGAAACCATTCTTCAATAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAAGAACTGGTACAGGATTTGAAATTTTGTGCCAAGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAAGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256520" ref_strand="+" ref_description="SGN-E256520 [cLEG-38-E23]">
      <seq>aaacacaggaaaccatttttcaagaaagagagaagctggctgcagaggcttatggtgtattcacaagttgagtcccaacaatactagaaactgttgtttctgactctgaggttgaacaacctgacgtcaaagtaacttcaggaactggtacaggatttgaaatcttgtgccagggttttaattgggaatctcataaatccggaagatggtacaatgagctgcatgataaagctgcagagctatcttcacttggtttcagtgtgatctggttacctgcaccaactgactcattgtcaccagagggatacatgcctatggatttatataacttaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35612" stop="36549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35912" g_stop="36249" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E256520" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35912" e_stop="36249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCC</genome_strand>
        <mrna_strand>AAACACAGGAAACCATTTTTCAAGAAAGAGAGAAGCTGGCTGCAGAGGCTTATGGTGTATTCACAAGTTGAGTCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGAACAACCTGACGTCAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATCTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAATGAGCTGCATGATAAAGCTGCAGAGCTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTGCACCAACTGACTCATTGTCACCAGAGGGATACATGCCTATGGATTTATATAACTTAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276047" ref_strand="+" ref_description="SGN-E276047 [cLEN-12-E8]">
      <seq>aacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactgtggctgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacacgattacctgtcggagtttggtggatatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="38469" stop="41713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38769" g_stop="38830" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39780" g_stop="40029" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="312" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="435" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="603" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="0.96"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41499" g_stop="41512" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="617" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E276047" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38769" e_stop="38830"/>
          <exon e_start="39780" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAA</genome_strand>
        <mrna_strand>AACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTGTGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACACGATTACCTGTCGGAGTTTG.......................................................................................GTGGATATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254835" ref_strand="+" ref_description="SGN-E254835 [cLEG-33-F11]">
      <seq>tgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggcgtgagggaggagattggttatgatggatggaggcttgattttgttcgtgggttttggggtggttatgtgaaggattacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="38474" stop="41713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38774" g_stop="38830" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39780" g_stop="40029" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="308" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="431" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="599" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41499" g_stop="41512" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="613" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E254835" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38774" e_stop="38830"/>
          <exon e_start="39780" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGC-TGAGGTTCAATTCTCTTTGCTTTAACCTATATTGGTCTTCTTTTTTTCCCTTTATTTTTGTTTCTGTTTATTCTCATTTGGAACACCTTTTGATGGTTAAATCAAGAGAATGTCATCCTTTTACGTGTAATGCATGAGCTTTTAGCGACCTAGGTTCTTTTGCAATAATTACATAGGTGTTACCAAAATAAATATCATTTGGTGTCTGTCAATCCAGGGTTAAATTTTAATCGACCTAGCATATTTAGCACTATATAATAAAATGCAAAGCATTGGAGCAAAAGTCAAGAGGTTTTCTACTGTGTCTATGTCAAGCACATTAGAACAGGAAGCCAACAGGATATAGATATCACGTGAAGTGCAAGGACTTCTGTTTTTTGGGGAATTTATGCATTCTGTGGGAAGAATAGGAAAGATATGGCAGATGGAAATTTGATACTGCTTAAAGAGAAGACTTGAAATATACTGCTGTCACTCTGGAAGACATAGATGTCATTTTTCTAAAGAATTTAACCATGATCTCAAGGGAAAAAATTGGTAACTGAAGGCAGTTAAAATTGAGATTGCGGTTGGCAAAGGGACTGCATTACTTACGCCACACTAATGCTTTGATTCAAAATGTGAAAACTAAACGAGGTTCAATAAATATCCTTTTAAGAACATTTAAATAAATACTTGATTGATAGTTGATTCAATAACTGCTTTCTTTACTTCACAATCCATTTCTTTTGAAACAGAAAGGCAGTATCAGCAGGTCCTACTTTAGTCACTTGCATATAGGAGCGAAATAGAATCTGTTTCATGGGTATTTCAGCTTAATTGTCTGTTTACTTGCTATACAATATAATTTTACGTGTCTTGTCTTTCTATTTCCCATGTGTTACTCAAGAATGTCCCAACTAACTTCAGAGGTCATCTTGTAACAATATTTTATGATTACGCTGGTTTGACAGGGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAA</genome_strand>
        <mrna_strand>TGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728429" ref_strand="+" ref_description="SGN-E728429 [LA17DB07]">
      <seq>attacttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctcctagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttgnngttagcattgagtgactggagatgggaacagtgaatgtcgtanaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39548" stop="42104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39848" g_stop="40029" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="305" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="473" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41499" g_stop="41804" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="779" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E728429" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39848" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATT</genome_strand>
        <mrna_strand>ATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCTAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGNNGTTAGCATTGAGTGACTGGAGATGGGAACAGTGAATGTCGTANAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545751" ref_strand="+" ref_description="SGN-E545751 [TUS-68-M5]">
      <seq>ttggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaaaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaacagtgaatgtcgtaaaaagctgtactgcagcgaattgtatctagctttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39553" stop="42094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39853" g_stop="40029" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="468" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41499" g_stop="41794" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="761" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E545751" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39853" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGC</genome_strand>
        <mrna_strand>TTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAA-AATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGG-AACAGTGAATGTCGT-AAAAAGCTGTACTGCAGCGAATTGTATCTAGCTTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312634" ref_strand="+" ref_description="SGN-E312634 [cLEZ-20-P19]">
      <seq>tggaagcaactgaaccttacttcgctgtaggcgagttttgggattccctggtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataagaaatcttatatcactcagaaagcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39554" stop="41688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39854" g_stop="40029" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41244" g_stop="41388" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="444" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E312634" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39854" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGA</genome_strand>
        <mrna_strand>TGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTGGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAAGAAATCTTATATCACTCAGAAAGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699120" ref_strand="+" ref_description="SGN-E699120 [FA08CH11]">
      <seq>ctgaaccttacttcgctgtaggcgagttttgggattccctcgtttatacttatggagagatggatcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaattcaccatgtacactatacatagtctggtaaaaactgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39563" stop="42225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39863" g_stop="40029" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="458" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41499" g_stop="41925" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="884" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E699120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39863" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATG</genome_strand>
        <mrna_strand>CTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGG-AAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702475" ref_strand="+" ref_description="SGN-E702475 [FA18DC11]">
      <seq>cctcgtgccgtcacaatcaagatgcgcataggcagagaattattgactggattaatgctactaatggaactgcaggagcatttgacgtgacaacgaagggaattcttcattctgcaattgagagatgtgaatactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaatcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39627" stop="42253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="40029" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40152" g_stop="40274" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="236" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="404" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41499" g_stop="41953" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="859" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E702475" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="40029"/>
          <exon e_start="40152" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCTGTAAGTGTTTCAAACTTTATCCTTGCATGCAATACTTGACCGGCAGTACTTAATAAAAGGAAGGATTGGGAAATCAGTTTTTCTAGGTTAACAGCATTTTCTTTCAAATTCTATGTAATCAGGCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGT-AAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGC</genome_strand>
        <mrna_strand>CCTCGTGCCGTCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT..........................................................................................................................GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAA-TCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546096" ref_strand="+" ref_description="SGN-E546096 [TUS-69-E14](-)">
      <seq>ttgagagatgtgaatactggcgactatccgatcagaaggggaaactcccggccgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatataacaaaagccgaaagggatgtttacgcagcagttattgatgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaatggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggtagcagttaatgtcgtaaaaatgctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccactacattatattgccttttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgatagaccgcctttttagcgtataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39856" stop="42364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40156" g_stop="40274" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="287" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41499" g_stop="42065" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="852" r_length="565" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E546096" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40156" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="42065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCC--TTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAAT</genome_strand>
        <mrna_strand>TTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACTCCCGGCCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATAACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGATGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAATGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGTAGCAGTTAATGTCGTAAAAATGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGT----ACCACTACATTATATTGCCTTTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAGACCGCCTTTTTAGCGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368604" ref_strand="+" ref_description="SGN-E368604 [TUS-23-L16]">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaattggcaaaagttctagcaaacacaaggctgtaaaattcttcagcgtatttatttttttggtacagaacgtctctcttaggttccatttggactcaacttaaaatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39870" stop="41126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40826" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E368604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246139" ref_strand="+" ref_description="SGN-E246139 [cLEF-40-M24]">
      <seq>tactggcgactatccgatcagaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacaggtaaaatatgctctttagttatcagaggactagagaagctcctcttttaatcttgatcaatgataaaaggttttttttatgaggaggcagatagttcagcatatccactggccggaaccaactatacctttcttgatcattcaattaatttaccacctttttcctgcttaagtgtggttggattgctcaagcgtgagagctaaatgtactttgaatcctggcagctgcctataaatgctatttacagttagatatcatgatgaaatgtaaaccctgtagcttctctattgactctagtgcatagctgtgaccaccattaggaagaatagttccccttggaaatcagttaagaaacaaaatcctagtccagcctagtcatcaactttgattttgtttggtttctttgctcttgatgttccataatttgcttgtcaatatctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39870" stop="41018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40718" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E246139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</genome_strand>
        <mrna_strand>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700011" ref_strand="+" ref_description="SGN-E700011 [FA11DD10]">
      <seq>atcccatcttaaggggaaacctcccggcgttgttggatggtggccatctcgtgctgttacatttatagagaatcatgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39881" stop="42296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40181" g_stop="40274" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="262" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41499" g_stop="41996" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="760" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E700011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40181" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="41996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTA</genome_strand>
        <mrna_strand>ATCCCATCTTAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349199" ref_strand="+" ref_description="SGN-E349199 [cTOS-2-I22]">
      <seq>tgatacaggttctacacagggtcattggagatttcctggtgggaaagagatgcaaggttatgcctatatcctgactcaccctggaaccccgtcagtcttctttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="39956" stop="42330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40256" g_stop="40274" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41244" g_stop="41411" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="187" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41499" g_stop="42030" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="719" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E349199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40256" e_stop="40274"/>
          <exon e_start="41244" e_stop="41411"/>
          <exon e_start="41499" e_stop="42030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATGCAGTTCAGCTGAAAAAGTGATTCACATATGAACTAATGGGATAATTGTAAATTTGAAATGGATTGTCTCCCAATTTAGGTAGCATTCCAAACACTTCCATTGATGTTTTTCAATTCTTTACATTTTCACTAGTATTTAGAGTTTGTAGTTGAAAATTTAGAAGTCCTCAGCCGTGCAATCAAATAAAATTGGGTCTATTCTCTTTATTTTTTTGGGTTACATGGACTTAGTTTAGTTCCATACTCTTCTTTCTCATGCTGAACCTCTAGTCATCACATCTTTAGGCTTGTCATATGATCTCCTCAATGGACTTGTAATTGATTGTTGTAATATCATGGAATAATACTACGCATAAGATCTGACTTGTTTTTCATCCTTATTATTTATTTTTCCTGTATCTTGGGCTTTTCCTTGAAGGGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGC</genome_strand>
        <mrna_strand>TGATACAGGTTCTACACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368603" ref_strand="+" ref_description="SGN-E368603 [TUS-23-L16](-)">
      <seq>tttgatcacattttctctggttaccgatctgaaataggaaatcttatatcactcagaaagcggaacaagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="41025" stop="42380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41325" g_stop="41411" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41499" g_stop="42088" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="677" r_length="590" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E368603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41325" e_stop="41411"/>
          <exon e_start="41499" e_stop="42088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTT</genome_strand>
        <mrna_strand>TTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549258" ref_strand="+" ref_description="SGN-E549258 [TUS-68-M5](-)">
      <seq>aagattaactgtcggagtttggtggatatcacaaaagccgaaagggatgtttacgcagcagttattgacgataagctggctgtcaaaataggaccaggccactacgagcctccaagtgggcatcagagatggaaaacggctgctgagggtaacaattataaggtttgggaattgtcatgaaaacaatcgccttctttccctgttaccgatattctgctatttgtaaatgcttggggttagcattgagtgactggagatggaaacagtgaatgtcgtaaaaaagctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtattgtatttgtattattacaattgagttgctgggttcagctactgaataaaagtctccagccttattggacaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="41091" stop="42455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41391" g_stop="41411" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87">
            <donor d_prob="0.828" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41499" g_stop="42154" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="676" r_length="655" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="700"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E549258" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41391" e_stop="41411"/>
          <exon e_start="41499" e_stop="42154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAACTGTCGGAGTTTGGTAAGTCCGTGATTAAAGACATCTTTTTTCTCTTATGGATGCAGAACCAATACTAATCCTAATATGCTGAGCTTTCTGTCTGATCAGGTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTATTTGGACAGA</genome_strand>
        <mrna_strand>AAGATTAACTGTCGGAGTTTG.......................................................................................GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTA-TTGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249333" ref_strand="+" ref_description="SGN-E249333 [cLEF-50-O11]">
      <seq>atatacagtttttaccaaactatgtatagtgtacatggtgaatttttccaaatacaacaatattaacagcaattattaccagactgttcatactcttgctattttagctccaacaacttcaatttgtgttgcagcaaagctagatacaatccgctgcagtacagcttttttacgacattcactgtttccatctccagtcactcaatgctaaccccaagcatttacaaatagcagaatatcggtaacagggaaagaaggcgattgttttcatgacaattcccaaaccttataattgttaccctcagcagccgttttccatctctgatgccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42224" stop="41294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41924" g_stop="41594" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E249333" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41924" e_stop="41594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACAGTTTTTACCAGACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</genome_strand>
        <mrna_strand>ATATACAGTTTTTACCAAACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282330" ref_strand="+" ref_description="SGN-E282330 [cLER-18-I23]">
      <seq>agctgtactgcagcggattgtatctagctttgctgcaacacaaattgaagttgttggagctaaaatagcaagagtatgaacagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaatacgcattgtaaaaactgtgtgatgtaaagaactcctgtgcaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtatcgctgtattggatttgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="41459" stop="42400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41759" g_stop="42103" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E282330" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41759" e_stop="42103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTG</genome_strand>
        <mrna_strand>AGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATACGCATTGTAAAAACTGTGTGATGTAAAGAACTCCTGTGCAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATCGCTGTATTGGATTTGTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248392" ref_strand="-" ref_description="SGN-E248392 [cLEG-1-B17]">
      <seq>aaattgaagttgttggagctaaaatagcaagagtatgaccagtctggtaataattgctgttaatattgttgtatttggaaaaattcaccatgtacactatacatagtctggtaaaaactgtatatgataggtaccaaccactacattatattgccttttcagaagataaataggcattgtagaaactgtatgatgtaaagaacttctgtacaacttattcgccatattggcgataagacgcctttttagcgtataaatactaaaatgtatgtattgctgtaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="41500" stop="42380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41800" g_stop="42079" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="281" polyA_stop="299"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E248392" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248392" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41800" e_stop="42079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGT</genome_strand>
        <mrna_strand>AAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGACCAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359937" ref_strand="+" ref_description="SGN-E359937 [cLPP-9-C21]">
      <seq>ttaataaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42506" stop="44108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42806" g_stop="43136" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43808" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="419" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E359937" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42806" e_stop="43136"/>
          <exon e_start="43730" e_stop="43808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG--GA-GAAA-----AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGGT</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361321" ref_strand="+" ref_description="SGN-E361321 [cLPP-15-H23]">
      <seq>tttaataaaatcaaaaactaccaagggttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42506" stop="44106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42806" g_stop="43136" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="340" r_length="339" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43807" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="418" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E361321" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42806" e_stop="43136"/>
          <exon e_start="43730" e_stop="43807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAAC-AAAAAA-AAGG---AG-----AAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGG</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAGGGTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAA-TGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362698" ref_strand="+" ref_description="SGN-E362698 [cLPP-1-K20]">
      <seq>ttaataaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagagtaagtgtttttaagatatcgaaatcatgtatatatgtatctttttcgagacacgaggttagaatattgtatagaaatgaatctttttgtcttgtcaatctcgaaaaactagctgataaggagaggattgttgatatcacaatacataaagtatatattccgattatgtaaggacattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42506" stop="43618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42806" g_stop="43318" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E362698" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42806" e_stop="43318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG--GA-GAAA------AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGA</genome_strand>
        <mrna_strand>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATATATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTCGAAAAACTAGCTGATAAGGAGAGGATTGTTGATATCACAATACATAAAGTATATATTCCGATTATGTAAGGACATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362107" ref_strand="+" ref_description="SGN-E362107 [cLPP-11-E8]">
      <seq>taaaatcaaaaactaccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42510" stop="44088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42810" g_stop="43136" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43788" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="395" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E362107" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42810" e_stop="43136"/>
          <exon e_start="43730" e_stop="43788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-GA--G-----AAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATG</genome_strand>
        <mrna_strand>TAAAATCAAAAACTACCAAATCTTGGGTTTTTTCCCC-AAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365005" ref_strand="+" ref_description="SGN-E365005 [cLPP-17-L15]">
      <seq>ccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaaaaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaaaactgggctaataacaggaaggcactagcagactgtgctaagggatttggtcatggtacaactggtggtaaagatggtagattctatgttgtcaccgatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42525" stop="44278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42825" g_stop="43136" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43978" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="579" r_length="258" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E365005" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42825" e_stop="43136"/>
          <exon e_start="43730" e_stop="43978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-----GAGA--AA-AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAAT--G-------ACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</genome_strand>
        <mrna_strand>CCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGATGCAAGGCATACAATCCAATTGACAAGTGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAAGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363561" ref_strand="+" ref_description="SGN-E363561 [cLPP-3-E19]">
      <seq>ccaaatcttgggttttttccccaaggctgcaggtggtagcagaaaaaaaaaagacaaacaaaaaccaaaaaagaagaaaaagaaattaaaaaaaaaatatctgctaccaaaaaaaatggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttcttctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaagagctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcactcaaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaaggaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaaaaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaaaactgggctaataacaggaaggcactagcagactgtgctaaaggatttggtcatggtacaactggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42525" stop="44243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42825" g_stop="43136" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43943" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="544" r_length="223" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E363561" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42825" e_stop="43136"/>
          <exon e_start="43730" e_stop="43943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAA-CAAAAAA-AAG-----GAGA--AA-AAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGATGAGCTGTTGAATAGAGCATTATTCACTCTACCCTTCCCAGACCCCACTTGTAGGATGTATATTGAATAGATAGGATGTATGTTGAATAGAGCGTTCACTCTTGCATAGATTGTCAAAAGATCCTATTTTTTTATGACAAGAGAAACCTGCAGCTGCTACCCTTTGGGTGCGCACAGGGTAAAACCGTCGCTCCTATGGAATAGCTCGCCAAAACAAATAGGAGAAGTAACCCGCACTAGGCAATCCCGGTGCGACGAGCTCGACCCAGAAGGCAAAAAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCGAAGCTCAAACCAGTGTGCCATCCCGAAGGGTAAAGATGCTATTTTTAACATGAGTTATTGTGTAAATGTTGCAGAACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAAT--G-------ACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGT</genome_strand>
        <mrna_strand>CCAAATCTTGGGTTTTT-TCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACCAAAAAAGAAGAAAAAGAAATTAAAAAAAAAATATCTGCTACCAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTATGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTACTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAAAGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGAGAAGGTTGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGATGCAAGGCATACAATCCAATTGACAAGTGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAAAGGATTTGGTCATGGTACAACTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331529" ref_strand="+" ref_description="SGN-E331529 [cTOD-9-B23]">
      <seq>ccattgtggatcatcttcgagaagtcgatgatcatcaggttgaaacaagaacttatgatcaacagtaataagacaattgatggcagaggtgtgtctgttcatgttgcatatggaggtggacttaccttacaatttgtgcacaatgtgattgtccacaacattagagttcatcacatcctttctaagaatggtggtatgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcctcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttcccacaagataaaatcatgcaagttacagttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="43740" stop="44891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44040" g_stop="44426" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44528" g_stop="44591" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="451" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E331529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44040" e_stop="44426"/>
          <exon e_start="44528" e_stop="44591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCAT</genome_strand>
        <mrna_strand>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547509" ref_strand="+" ref_description="SGN-E547509 [TUS-71-G21](-)">
      <seq>atgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="43935" stop="45798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44235" g_stop="44426" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44528" g_stop="44770" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="435" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45215" g_stop="45497" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="718" r_length="283" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="742"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E547509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44235" e_stop="44426"/>
          <exon e_start="44528" e_stop="44770"/>
          <exon e_start="45215" e_stop="45497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTC</genome_strand>
        <mrna_strand>ATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547699" ref_strand="+" ref_description="SGN-E547699 [TUS-71-L11]">
      <seq>ttcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttcatttttggggttgacatggagccgaatatttttttttggggggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="43994" stop="45847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44294" g_stop="44426" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44528" g_stop="44770" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="376" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45215" g_stop="45544" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="707" r_length="331" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E547699" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44294" e_stop="44426"/>
          <exon e_start="44528" e_stop="44770"/>
          <exon e_start="45215" e_stop="45544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCA-TTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTC</genome_strand>
        <mrna_strand>TTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTCATTTTTGGGGTTGACATGGAGCCGAATATTTTTTTTTGGGGGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364962" ref_strand="+" ref_description="SGN-E364962 [cLPP-17-E18]">
      <seq>tcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgatggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaaccatcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="43995" stop="45063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44295" g_stop="44426" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44528" g_stop="44763" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="368" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E364962" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44295" e_stop="44426"/>
          <exon e_start="44528" e_stop="44763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGACGTAAGTTTTTCTCATCTCACATTATCAGCTATGTTCATAAGCCAGGTCTCAAAAGGGGGTTGTCAATGTGTTTAAGCTAACAACAACAAATGACTGTTTAGGTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACAC</genome_strand>
        <mrna_strand>TCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCGTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC.....................................................................................................GTTATGCTTTTGGGAGCAAACGATGCCTTCCCTCAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547698" ref_strand="+" ref_description="SGN-E547698 [TUS-71-L11](-)">
      <seq>aaatcatgcaagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgcaggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctattggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaatcccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactggcaatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggaccagaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaatttgtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctaggcatgttatatgtacaatgtaatatcaattataatacataaaacatattgtacatttcatttttggggttgacatggagccgaatatttttttttgggggggtcttttacagtaagagaagaagaaaacggctaagacatctatctgttttctctgtttttttcgactattgctttctttcttcttcctagctggtttactctataggtgaaacagtgaagatggggaagaaaacgaaaaaaagtgggttctctggagctcaaagtttatctttttgtaacagaagttttggtttacgattttctnaataaatgtaattttccctgtttgaatttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="44268" stop="46082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44568" g_stop="44770" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45215" g_stop="45777" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="765" r_length="562" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="787"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E547698" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44568" e_stop="44770"/>
          <exon e_start="45215" e_stop="45777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTACTATCTACTTAACATTCCAATCACATTTTCTTTTATAAAAGCTGTGCCCGCGAGGTCAGCATGCACCCACCTCGACTATTTCACCAACTACCTGCTACCTCCAATCAACTCATATATCAGATAGTATATATATGTCTACCAAGGCTTAAGCATATATGATGAGATCACTTTACCATTCTTGTTCAATCACATTTTCTTTCACAGAAGTGGCATCCGTGGGTCAACTTGCACCCCACCTGGATCACTTCACCAAACACCTGCTACCTCCAATCAGCACACATACCACATATACGTGACGAGATCACCTAACTTTTTTGTTCAATCACAGTTCTTGATATGTTATATTAGATTGTAGCATAAGTACAACATAAACACACTTAAAAAACATCATTTCGCCTTATTGCATTGTCAATTGCTAACATAAAGTATGCTAAAATGAAGGTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCA-TTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACG-AAAAAAGTGGGTTCTCTGGAGCTC-AAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCT-AATAAATGTAATTTTCCCTGTTTGAATTTCA</genome_strand>
        <mrna_strand>AAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAACCGGAATGGCGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACACAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATCAATTATAATACATAAAACATATTGTACATTTCATTTTTGGGGTTGACATGGAGCCGAATA-TTTTTTTTTGGGGGGG-TCTTTTACAGTAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCTGTTTTTTT-CGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAACAGTGAAGATGGGGAAGAAAACGAAAAAAAGTGGGTTCTCTGGAGCTCAAAGTTTATCTTTTTGTAACAGAAGTTTTGG--TTTACGATTTTCTNAATAAATGTAATTTTCCCTGTTTGAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219766" ref_strand="+" ref_description="SGN-E219766 [cLEL-24-O9](-)">
      <seq>tgggaccaggacatctatctgttttttcagtttttttccgactaatgctttcttttttcttcctaggtggttttctctataggtgaagcagtgaagatggggaagaaaacgaaaaaagtgggttttttggaggtcaagtttatctttttgtaacagaagttttggtttttaccattttttaataaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="45270" stop="46054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45567" g_stop="45754" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E219766" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45567" e_stop="45754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTCTCTGGAGCTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCTAATAAATG</genome_strand>
        <mrna_strand>TGGGACCAGGACATCTATCTGTTTTTTCAGTTTTTTTCCGACTAATGCTTTCTTTTTTCTTCCTAGGTGGTTTTCTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTTTTTGGAGGTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACCATTTTTTAATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392543" ref_strand="+" ref_description="SGN-E392543 [TUS-35-G12](-)">
      <seq>cgatccgatgcttcatgcacaaagagtagctgctattaagaaagcaaaggggacacctgccgctaggaaacgtgcctcagaatccatgaaaagttacttccgtgatccagataaccgccgcaagagaagcatatccatgaaaggggtgaaattttactgtagaaattgtggacaggaaggacataggagtaactactgtccagaaattcgagacaatacggatagacattatagatgtggattatgtggaacaaagggtcataacagaagaacttgcttaaagttgagcttaattgtaccgaaaaagacagttaaggttaatcatcattgcagcaagtgtcaaagaagtggccataacagaagaacatgccaccaaaagaatgaattcgccactaaagtggttgcaacaatcaagactcgagtaaagagaacttatagctgcagcctgtgcttaggaaaaggacccaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatccctggatgtttcgactttgttttcatatctcgtttaatgcattattatggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgtttcaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaataataaaactgttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="47573" stop="45710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47273" g_stop="47234" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47233" i_stop="47142" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47141" g_stop="47039" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="143" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47038" i_stop="46595" i_length="444">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46594" g_stop="46004" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="735" r_length="592" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E392543" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47273" e_stop="47234"/>
          <exon e_start="47141" e_stop="47039"/>
          <exon e_start="46594" e_stop="46004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAGGTTTGACTTGCTAACTTCATATCTTAATGATTGACCTCTAGCTGTGTGTAACTATAGACATTCACCTTCTTGCCATGACACTTGTTATGCAGAAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAGGTGTAAAAAGTTTTAGCTCATGTCACACTTAAATTAATGATGTTTTTGCTATCTTCTTTGGATATATCATTAGCTGAAACGAAAATGTCGAGTGGCACTCCTTGAATGCTTCTTTAAGGGTCTTAAACTGTTACACTAAAGAAAATAATTGGTGTAAACCACTTTATAATGACTCCATACAATTAGCAGAAATGTACAACACAATATACGTGCAAGCTAGAGGACGTTCTTCTTGAGCTACATCATGGTCTCTATGTTTGTCTGTATACAGGACGTAAAAAGAGATGGTATAGAGAAAAAGAGAGAAAATATTTCATTCTTGTTTCCCTTCATTTACTTGTCACAGTAAGTTGAGTTCACCATTTGGTTTGTGTGGCGTAAATACTGCTGCACATCATTCTTGATATTCTGGTACAACATCTTACTGTCATTTTCTAATCGCAGGGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAAT-ATAAAACTGTTATAAATATCATCA</genome_strand>
        <mrna_strand>CGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG............................................................................................AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGCCACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCCTGTGCTTAGGAAAAGGACCCAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTGGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTATGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTCAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATAATAAAACTGTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392313" ref_strand="+" ref_description="SGN-E392313 [TUS-35-I18](-)">
      <seq>gacaggaaggacataggagtaactactgtccagaaattcgagacaatacggatagacattatagatgtggattatgtggaacaaagggtcacccccgacgaacttgcttaaagttgagcttaattgtaccgaaaaagacagttaaggttaatcatcattgcagcaagtgtcaaagaagtggccataacagaagaacatgccaccaaaagaatgaattcgacactaaagtggttgcaacaatcaagactcgagtaaagagaacttatagctgcagcgtgtgcttaggaaaaggacacaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatcccttgatgtttcgactttgttttcatatctcgtttaatgcattattctggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgttttaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaatataaaactgttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="46867" stop="45710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46567" g_stop="46004" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E392313" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46567" e_stop="46004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</genome_strand>
        <mrna_strand>GACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCACCCCCGACGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370153" ref_strand="+" ref_description="SGN-E370153 [TUS-28-A24](-)">
      <seq>aatcaagactcgagtaaagagaacttatagctccaagcgtgtgcttaggaaaaggacacaacgccaggacatgtcttcataaaagcaactccaaaagcagatagttatttgtaaggaaatcccttaatgtttcgactttgttttcatatctcgtttaatgcattattctggtttttcctcttctgtgcttgtacatgtgatcgatctcccattcaattctgatatttcttcgttttaaatgtttgttcgattgaaaactctggatcaatttgctctaaggttgtggaaaaatctgtcttgaatataaaactgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="46629" stop="45710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46329" g_stop="46005" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E370153" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46329" e_stop="46005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGACTCGAGTAAAGAGAACTTATAGCTGC-AGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATC</genome_strand>
        <mrna_strand>AATCAAGACTCGAGTAAAGAGAACTTATAGCTCCAAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTAATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344094" ref_strand="+" ref_description="SGN-E344094 [cTOF-16-A13]">
      <seq>aaaaacatcaaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaatgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagataaaccaagcgtgtctaccaatctcccaacacagaagtcaatttgaagatcaccagatcactaaaattggatgattgcagagcctaaatgccaaaactggattatttagtaaaaggatgaagattatccatggcgatccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50139" stop="46965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49839" g_stop="49598" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="461" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="550" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47513" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="683" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47340" g_stop="47265" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="759" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E344094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49839" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47513"/>
          <exon e_start="47340" e_stop="47265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</genome_strand>
        <mrna_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGATAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCACCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370154" ref_strand="+" ref_description="SGN-E370154 [TUS-28-A24]">
      <seq>aaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccacacagaagtcaatttgaagatcagcagatcactaaaattggatgattgcagagcctaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50130" stop="47016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49830" g_stop="49598" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="452" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="541" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47513" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="673" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47340" g_stop="47316" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="698" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E370154" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49830" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47513"/>
          <exon e_start="47340" e_stop="47316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGC</genome_strand>
        <mrna_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCC-ACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371180" ref_strand="+" ref_description="SGN-E371180 [TUS-28-B23]">
      <seq>aaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttaccttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcacgctatgtatgacccttcagaggagctttttggacttgatgctgatttgcaaccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagacgacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50130" stop="47247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49830" g_stop="49598" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="452" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="541" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47547" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="640" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E371180" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49830" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</genome_strand>
        <mrna_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTACCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAC............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAACCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGACGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392314" ref_strand="+" ref_description="SGN-E392314 [TUS-35-I18]">
      <seq>caaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacaacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50131" stop="47254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49831" g_stop="49598" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="453" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="542" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47554" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="635" r_length="93" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E392314" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49831" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACC-AATCTC</genome_strand>
        <mrna_strand>CAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACAACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270026" ref_strand="+" ref_description="SGN-E270026 [cLEM-7-N18]">
      <seq>gcaaaaagaaaataaaatctccattttaagggacttcttcaatgtgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50131" stop="47288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49832" g_stop="49598" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="454" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="543" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47588" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="601" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E270026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49832" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGAC</genome_strand>
        <mrna_strand>GCAAAAAGAAAATAAAATCTCCATTTTAAGGGACTTCTTCAATGTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270871" ref_strand="+" ref_description="SGN-E270871 [cLEM-6-B23]">
      <seq>aaaaataaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50130" stop="47918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49830" g_stop="49598" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48218" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="413" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E270871" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49830" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATC</genome_strand>
        <mrna_strand>AAAAATAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368165" ref_strand="+" ref_description="SGN-E368165 [TUS-22-K6]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaggggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgactgaaattggatctatcatcagccttggggcanaagattcatgtgagttttttcatgatccanacaaaggaagaagtgatgaaggtagagtcagggaagtgttgaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50193" stop="53031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50874" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51854" g_stop="51951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52060" g_stop="52152" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="573" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52382" g_stop="52476" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="668" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52699" g_stop="52731" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="701" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E368165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50874"/>
          <exon e_start="51854" e_stop="51951"/>
          <exon e_start="52060" e_stop="52152"/>
          <exon e_start="52382" e_stop="52476"/>
          <exon e_start="52699" e_stop="52731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGT</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCANAAGATTCATGTGAGTTTTTTCATGATCCANACAAAGGAAGAAG..............................................................................................................................................................................................................................TGATGAAGGTAGAGTCAGGGAAGTGTTGAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233565" ref_strand="+" ref_description="SGN-E233565 [cLED-9-H23]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaggggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50193" stop="52701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50874" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51854" g_stop="51951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52060" g_stop="52152" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="573" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52382" g_stop="52401" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="593" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E233565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50874"/>
          <exon e_start="51854" e_stop="51951"/>
          <exon e_start="52060" e_stop="52152"/>
          <exon e_start="52382" e_stop="52401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGAC</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233541" ref_strand="+" ref_description="SGN-E233541 [cLED-9-K8]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50193" stop="51175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50874" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E233541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237463" ref_strand="+" ref_description="SGN-E237463 [cLED-19-K13]">
      <seq>aaaatttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50193" stop="51109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50493" g_stop="50809" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E237463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50493" e_stop="50809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAA</genome_strand>
        <mrna_strand>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240528" ref_strand="+" ref_description="SGN-E240528 [cLED-21-E17]">
      <seq>tttgtgcttatacactactctaatagagcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50197" stop="52251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50497" g_stop="50874" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51854" g_stop="51951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="476" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E240528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50497" e_stop="50874"/>
          <exon e_start="51854" e_stop="51951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT</genome_strand>
        <mrna_strand>TTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244485" ref_strand="+" ref_description="SGN-E244485 [cLED-38-A5]">
      <seq>cttatacactactctaatagatcttgctccaagaaggggtctttccaaattccacttttgattcttgttttagcaaaattcttgtaaaaagattgaatctttgttaccccttttgcctaaaatctcttgtagccatgtctgtcttctctctttctgcttcccctgcttcaggttttagtctaaaccctactaaaacctcttcttatctctctttttcctcttccattaataccatttttgctcctttaacttccaacacaacaaaaagcttttctggtttgacctataaagcagctttgcctagaaatctttctttaacatgtcgccattctgattattttgaaccccaacagcaacagcagcagctacagggggcatctacgcctaaggtttttgttggatactcaatatacaaagggaaggcagctctcactgtggagcctcggtcaccagagttctcacctttagattcaagggccttcaagctgtcaaaagagggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50203" stop="52438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50503" g_stop="50874" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51854" g_stop="51951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="470" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52060" g_stop="52138" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="549" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E244485" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50503" e_stop="50874"/>
          <exon e_start="51854" e_stop="51951"/>
          <exon e_start="52060" e_stop="52138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGGGTAAGCTCTGTGAAGTTCTTTTGTTAATGGCTTTGCATATTCTTTGGTATTTCCTATTTTATGAATTAATTATGCCACAATTTGTAGCTATTACTTTGGATTGGTTTTGGGTGCTAGAGGTTTAAATGGATTTTCCTGCAATGTGAATGGGGTTGATAGAATTTTCACTAATTGCTTCATATGTTCTACTCAAAATAGCGAATTTTTGCTTGATTTGTTGTGGTTCTTTATGGGGGTAGTCTATTTATGTGTATAGGTTTTCGAGTGAAGTGTTAAAAACACATCTGAAGTATCTGTTTTATTGAGTTTCAATGCAAGCTCCTACCTGAATTATCACCGACTATTATCAAAACACACCTCAACTATCAGCGGTTCACTTTTCCTACTTGAATGATGGTGATATTTCATGTAAGAAACTCGCACACATCACACCTGATAGTTGAGGTGTGTTTTGAACTTCTGATAAATAGTTGGTGATATTTTAGATACGAAACTAAAAAAAGACGTGATCTTTAGGCGTGTTTACGTGATCTTTAGGTGTGTTTTTGACCATTATCTTCAATTTTGTGGGACATATGTATACATAATCCAGATGGAGAACATTGGTTATGGTTGAGGCCATTGTGAATGTCTTGGAATGCTCTGCTTGTGGAGTCATGTAAATTTGTTTTATATGTAGTGTTTGAAATGGAAAAGGAAAGGAGTACTTTTTAGTTTGTTCCAATTCTTGTTATCAAGACATCAACATATATATTAGAAAATTTTTATCACTTCCTAATGTTTTGTCTGTAAAGAAAATTAAGTTTTTGTCTCCCTCTACTACCTTCTGTTTTCGTCTTTCTAGTTTCTAGTACATTGTCTTAGAACACGAACAAGAGCTATTTTGGTATATTTGACTAAAGAATTAAGCCTGGTCAATTTATATTGCTTTGAGCCTTTTCATGCTACGGAAGAACTAAAAATGTCATTGGTTTTTTAGGGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATT</genome_strand>
        <mrna_strand>CTTATACACTACTCTAATAGATCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAAGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273946" ref_strand="+" ref_description="SGN-E273946 [cLEN-7-B14]">
      <seq>tcaccagagttctcacctttagattcaagggccttcaagctgtcaaaagaaggtatggtgatgcttcaatttgcacccgctgctggtgttcgtcaatatgattggagtagaaagcaggtcttctcgctgtcagtgactgaaattggatctatcatcagccttggggcaaaagattcatgtgagtttttccatgatccaaacaaaggaagaagtgatgaaagtagagtcaggaaagtgttgaaggttgagccacttccagatggctccggtcacttctttaatctcagtgttcagaacaagcttattaatttggacgagaacatttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccatacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="51628" stop="53923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51928" g_stop="51951" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.822" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52152" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="117" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52382" g_stop="52476" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="212" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52699" g_stop="52772" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="286" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52773" i_stop="52870" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52871" g_stop="52959" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="375" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53604" g_stop="53623" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="395" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E273946" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51928" e_stop="51951"/>
          <exon e_start="52060" e_stop="52152"/>
          <exon e_start="52382" e_stop="52476"/>
          <exon e_start="52699" e_stop="52772"/>
          <exon e_start="52871" e_stop="52959"/>
          <exon e_start="53604" e_stop="53623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCAGAGTTCTCACCTTTAGATGTATGCTTCCTCATGTATTTTGGTTGTTGCTCTTCTGTTCAATCTGTATTTAGTCATTGAGGAAATTGTAATTTGATGCTACTTTGGTGGTTCTGAATTATGGAGCAGTCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTAATCATTACCTTAATTTCTCTCTTTGCCCCACTGCTGAATACATTCTCTATGTGCTTCTCATATTTGCGGTGAGAATAAGCTTTGCTAAATATAATTAGATAGTATGTAGTAGTGATTTGTGGTATACGTGTAAGTGAAACTTTTAGTTTACATGGAGTCAGGCCATGATTTATGCTCTCCTTGTGTTGATTATGAAGGGCCTTTCTCAGTATTTGTGTGTTTACAGGTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTAATGCCTTCTTCCTTCATTCTATTACAGTGAAAATTGGACATCTATTTTGAACTATAGAACATGACTTGTTTGCCTTCCATCCTAAATGAAAACAGGTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTT</genome_strand>
        <mrna_strand>TCACCAGAGTTCTCACCTTTAGAT............................................................................................................TCAAGGGCCTTCAAGCTGTCAAAAGAAGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG.....................................................................................................................................................................................................................................GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG..............................................................................................................................................................................................................................TGATGAAAGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA..................................................................................................GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368164" ref_strand="+" ref_description="SGN-E368164 [TUS-22-K6](-)">
      <seq>actgaaattggatctatcatcagccttggggcaaaagattcatgtgagtttttccatgatccaaacaaaggaaaaagtgatgaaggtagagtcaggaaagtgttgaaggttgagccacttccagatggctccggtcacttctttaatctcagtgttcagaacaagcttattaatttggacgagaacatttacatcccagttacaaaggcagagttcgcagtttttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttttggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttttaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaatgtatttggctctttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="52100" stop="54299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52400" g_stop="52476" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52699" g_stop="52772" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="151" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52773" i_stop="52870" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52959" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="240" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53604" g_stop="53999" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="636" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="665"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E368164" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52400" e_stop="52476"/>
          <exon e_start="52699" e_stop="52772"/>
          <exon e_start="52871" e_stop="52959"/>
          <exon e_start="53604" e_stop="53999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAGGTAAAACCTACATCATTTTGCGTGGTCATAAAACCTAGTACCCACTACCATCCTGGTTATATTTGTTGATCTTCATGTATTTGTAGGCTAAACATACACTATTTTATAGCTTACCTTCTTTGAGATCAATATATTTTATTGATGGGGACCCGATGAGCGGGGAATTAATGTGTATTATCATCAGTTTAAGTTCTAAGAAGGCATTTTATGTGTGTTTTACAGTGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTAATGCCTTCTTCCTTCATTCTATTACAGTGAAAATTGGACATCTATTTTGAACTATAGAACATGACTTGTTTGCCTTCCATCCTAAATGAAAACAGGTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</genome_strand>
        <mrna_strand>ACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAAAAG..............................................................................................................................................................................................................................TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA..................................................................................................GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTTTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTTTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTTTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351322" ref_strand="+" ref_description="SGN-E351322 [cTOS-12-A17]">
      <seq>atttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttctggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttctaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="52606" stop="54281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52906" g_stop="52959" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53604" g_stop="53989" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="440" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E351322" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52906" e_stop="52959"/>
          <exon e_start="53604" e_stop="53989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTG</genome_strand>
        <mrna_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351527" ref_strand="+" ref_description="SGN-E351527 [cTOS-12-A16]">
      <seq>atttacatcccagttacaaaggcagagttcgcagttcttgtctccgcattcaattttgttatgccataccttttaggttggcacactgctgtaaattccttcaagcctgaagacgccagtcgctcaaacaatactaatccaagatcaggtgctgaacttgaatggaatcgatagttctggtgaaggtatgagcacgttgcctgtactacgattgcaggggcaatatgttccttcatcccctggatcgacattttgtatgaaccctcattcacttgcaccctccaatgagttctaatcgacgatagtagtattaactctcttcttgtaatgctgatttactgtaagttgtgttttattgtgtagcagtagaaactcattaactgattatcctgattcctgttgaatgtgaaatccagtctagtttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="52606" stop="54281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52906" g_stop="52959" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53604" g_stop="53989" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="440" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E351527" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52906" e_stop="52959"/>
          <exon e_start="53604" e_stop="53989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAATGTAAGATGAAGCTGGTCTCCCGTTTTCTTTCTTGATACAGTCTTTGTTTGTTTTCTCACCCATGTTTAGATATACCATTAATGCTAAAGAGTGAATTTTGCCAAAGTTCATGCACACATATAACTAGCTGTTTATGCAGTGTATCGCTCCAGTCCCTTTGATATTTGCTCAGAATTCCCTAATCAAGAGTAGACCTCAAGTTGAGACCATAAGTATTGATAGCCCCATAGTTTGCTGCTGACATGGACGAGAAAGGACTAAGGAATGAGATTAGAAGCAACTCGTGACAGCTTAAAACTTGGTTTTCGACTTCCGTAGTTGTCTTTTAGATTCTTCCTATTTTAGGAAATTGCTTACTTTTTTAGCCACCCCTGGACCTTGCCAGTGGCTAGAATCCATGGCGGTGTACCATGCGCCTTGTTTTTTTAAAAAGTGCCTCATGTTATACTACAAATTGAATCATCTTAGAACGAATCTATCTGCAAGGCGTCAAGTATAAATCAGGGCATATAAATCTTTGCTAACAACAGTTCTTTAGGATTGTTGTTGGTGTTATCATTTCACAGTTGTTATTTCTCTTCTTGGTTTCTACTCAGTGTTACGTTGATACCTCTTCTAACATGTTTTCTGCTGAATTCGTGCAGTTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTG</genome_strand>
        <mrna_strand>ATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543254" ref_strand="+" ref_description="SGN-E543254 [TUS-64-P15]">
      <seq>gaaagatagagcaatggattctactaagaaggatgaagataagctaaattcaacaaaatgtgagatatatgaagccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaatacaaagaatattattgcaacaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtacttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggcttgagcttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaacgacgagtattgatacaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatacgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggacaaaaaatagctaaagggaatccatgccctaaggcttactatcgttgcaccgtctccccctcatgcccagtcaggaaacacgttcaaagatgttctaaagacacgtccattttgaccactacatatgaaggaacacataatccccccctttcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="56983" stop="59636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57283" g_stop="57313" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57975" g_stop="58490" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58644" g_stop="58757" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="661" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58758" i_stop="59257" i_length="500">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59258" g_stop="59336" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="740" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E543254" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57283" e_stop="57313"/>
          <exon e_start="57975" e_stop="58490"/>
          <exon e_start="58644" e_stop="58757"/>
          <exon e_start="59258" e_stop="59336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAGGTACTACTAGCAGCTCGATTAGTTGGTTAGCTATACTTGAACTTTTACGTTATTGATGGGCGTTTGATTTTTAACCTTGTAATTCCCTCCGTCATTTCCCCTTAATTCCTCTACCCCTATCTAATAATGTTAAGAAAACAATAAATAGAAATGTACTATTACTTTTTCTTAATAATTAAAAAATTTTATACCGTCAGCATATATATAAATCTTCTATTCGAGGTGTATAATCAAGAAATTGTCCATACAATTATTTTTTTTTAAAAAAATGATTTGCTTTAGTCATTGGTTATCAAATTGGTTCATATTTTAAATTTTCAACTTAGAAATAAAGAATTTAAAGTTGGGATATTGAGGAGTTCTTCAAATTTCAACTTCTATAATTCAAGTTTTTGCCTTTACAAAATTTAACTATTTTTTTCGAGTAAAATTCACGTCCAAACATATTAAACGTCTATCTCTGACCCCTTTTTTTTCTCATGTTTTGTGATCTACGATAGGTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</genome_strand>
        <mrna_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAAGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCCCCCCCTTTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543005" ref_strand="+" ref_description="SGN-E543005 [TUS-64-J14]">
      <seq>gaaagatagagcaatggattctactaagaaggatgaagataagctaaattcaacaaaatgtgagatatatgaagccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaatacaaagaatattattgcaacaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtacttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggcttgagcttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaacgacgagtattgatacaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatacgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggacaaaaaatagctaaagggaatccatgccctagggcttactatcggtgcaccgtctccccctcatgcccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="56983" stop="59047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57283" g_stop="57313" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57975" g_stop="58490" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="547" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58644" g_stop="58747" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="651" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E543005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57283" e_stop="57313"/>
          <exon e_start="57975" e_stop="58490"/>
          <exon e_start="58644" e_stop="58747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGT</genome_strand>
        <mrna_strand>GAAAGATAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGGTGCACCGTCTCCCCCTCATGCCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302437" ref_strand="+" ref_description="SGN-E302437 [cLEW-27-K10]">
      <seq>aaagaaagagcaatggattctactaagaaggatgaagataagcctaaattcaaccaaaatgtgagatatatgaagcccaaagaagaaaatgaaaggctaaaaaggatgttatctaaaatgatgaatgattataaatctttggaaatgtattttcaaggcatattaactcaaaaaaataccaaagaatattattgcaaccaagtaataatattcatgaagaaaaagaacaagtggaacttgtttctttgagcttagggagaaatagtagtccttcaagagagttgatcaagaaggagttattatatgatgatcaaaataaaagtaataaaaaccatagtaaattattatttgatgggccttgagccttggattaggttgtaaattcactcaagaaaatagtttcgaggggccaaagaaggagaatataaataatgaaccgaccgagtattgataccaaaattaccttccatcggattactgtggcgaagaatttttgcagcaaattcctcaaaagaaggctagagtatctatccgggctgtgtgtgacactattacgatgaatgatggatgtcaatggagaaaatatggccaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="56984" stop="58982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57284" g_stop="57313" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57975" g_stop="58490" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="556" r_length="526" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58644" g_stop="58683" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="596" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E302437" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57284" e_stop="57313"/>
          <exon e_start="57975" e_stop="58490"/>
          <exon e_start="58644" e_stop="58683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGAGCAATGGATTCTACTAAGAAGGTAAAATTTATTTTGAAATTTAATTATAAAGATCTTTATTTTTCATAAAAGTTTTGTGTTTTAGTTCTTATAATTATATGAATGATCTTCTTTATACAGTTCGACCTCTCTATAACAATCGTTCTCTATAAATAATATCTTATTATAATAACTACGTTTTCTTTGGAATCGATTTTCATGTTATTATGTTGTATTATATACATATTCTATATAAGAATATTTCATTGTAGCAATAAAAAAATATGTTCCTTCTAATTTTGCATAAATTACAGGATTAATTCATTACAAATTTGGTTCCAATTTGTGGGGGGTTGACAATTCATCTTAATTAACAAAAAAGTTTATGAACTAATTAAAGACTTTAATTTGTGATGGAATATCATAAGTAAGTGGTTAATTTAATGATCTTTTTATTATGATCAAAAACTGAGATTTAACTCTTGCTTTAACCTACAAGTAGAATCAGGTGTATAATCGTTCCAATTTATGTGATATCTTTCAGATTTCATGAGTTAAACAAGTTTTTTCTTGACTGTGATTTTTTTAAATATACATGTCTTATTGTCTATTATTTTGACTTGTAATACTGTTTTACGATCAAAATTAAAAGTTTGACTCTCGAATCCCGAGTACGATGCTTATAAGTTTTTATTGTGATCAGGATGAAGATAAG-CTAAATTCAA-CAAAATGTGAGATATATGAAG-CCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATA-CAAAGAATATTATTGCAA-CAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGG-CTTGAG-CTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAA-CGA-CGAGTATTGATA-CAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACGGTTAGTTCAAGGCTAACAGTCATAAACACATCTAAATTATCATATTTTCATGAATTTAATTAACTTATCGTAATTATTCATTGTTCTGTTTAGTTTAGTTATTATTCTCTTTGTATTAAAACACACCTGGATATAATCGATCTGCAAATGCAGATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAA</genome_strand>
        <mrna_strand>AAAGAAAGAGCAATGGATTCTACTAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATAAGCCTAAATTCAACCAAAATGTGAGATATATGAAGCCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACCAAAGAATATTATTGCAACCAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTCCTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCCTTGAGCCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACCGACCGAGTATTGATACCAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATCCGGGCTGTGTGTGACACTATTACG.........................................................................................................................................................ATGAATGATGGATGTCAATGGAGAAAATATGGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543004" ref_strand="+" ref_description="SGN-E543004 [TUS-64-J14](-)">
      <seq>actacaaacctcatcaagtactattcttcatcatccaattcctactccacattgtgtaataatatcaaaagtgaaattggacctctttcatatctagggaggccatgttattctaatcagccttatattacttcaaaagaacaatcagaacatgatcgttcagtacagtgccggagtcagaatttttgatgaattaattcaaaaaaaaatgcaaaagtatcacataggatttgatcatgtgacctaaaatgaattttggactactttttgtacattaaagtagaatcttcttttatacgaaaggaagactatttttgtttttattttatatgtacggtataatttttttgcaaaagatatttctttatcaacttatagaaatcctcaacaattgtatttatatgacactatttactttttagtctctcataaaaaaaggtctttttcatattcggaaaaaattgaactttaaaacttcccatgttgctcttagcaacatgtttttaagactcttttaaactccgtgcctaatcgggttcaacataagatgaaatggattaagtactaatgaagagtagtagtaatagatttttctaacggtgaattagtgagaaatttgtgttatacaacatgtttttccatttatttccaccaaatcagttcactgggaatatgctagattctcaatgaaatagtaaattttctaattttattgtatgagagcattactatttttcatcaattcaatcaaaatatcagtgaacatatcatgaccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="59279" stop="60660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59579" g_stop="60366" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E543004" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59579" e_stop="60366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAA-CTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</genome_strand>
        <mrna_strand>ACTACAAACCTCATCAAGTACT-ATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTCTTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543253" ref_strand="+" ref_description="SGN-E543253 [TUS-64-P15](-)">
      <seq>caaaagtgaaattggaccttcttcatatctagggaggccatgttattctaatcagcgttatattgcgtcaaaagaacaatcagaacatgatcgttcagtacagtgccggagtcagaatttttgatgaattaattcaaaaaaaaatgcaaaagtatcacataggatttgatcatgtgacctaaaatgaattttggactactttttgtacattaaagtagaatcttcttttatacgaaaggaagactatttttgtttttattttatatgtacggtataatttttttgcaaaagatatttctttatcaacttatagaaatcctcaacaattgtatttatatgacactatttactttttagtctctcataaaaaaaggtctttttcatattcggaaaaaattgaactttaaaacttcccatgttgctcttagcaacatgtttttaagactcttttaaactccgtgcctaatcgggttcaacataagatgaaatggattaagtactaatgaagagtagtagtaatagatttttctaacggtgaattagtgagaaatttgtgttatacaacatgtttttccatttatttccaccaaatcagttcactgggaatatgctagattctcaatgaaatagtaaattttctaattttattgtatgagagcattactatttttcatcaattcaatcaaaatatcagtgaacatatcatgaccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="59344" stop="60660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59644" g_stop="60366" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E543253" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59644" e_stop="60366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</genome_strand>
        <mrna_strand>CAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCGTTATATTGCGTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714941" ref_strand="+" ref_description="SGN-E714941 [FB12DE08]">
      <seq>cgcgaaggaagcagaataggaagacatttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcttgtacagcacagttcagtaacttactgaataaatgattttgctttctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="61603" stop="60201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61303" g_stop="61192" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61191" i_stop="60903" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60902" g_stop="60491" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="524" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E714941" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61303" e_stop="61192"/>
          <exon e_start="60902" e_stop="60491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACCAA</genome_strand>
        <mrna_strand>CGCGAAGGAAGCAGAATAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299803" ref_strand="+" ref_description="SGN-E299803 [cLEW-1-G3](-)">
      <seq>catttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcaagtacagcaaaattcagtaacttactgaataaatgattttgctttgtacatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="61579" stop="60201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61279" g_stop="61192" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61191" i_stop="60903" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60902" g_stop="60493" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="498" r_length="410" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E299803" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61279" e_stop="61192"/>
          <exon e_start="60902" e_stop="60493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACC</genome_strand>
        <mrna_strand>CATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCAAGTACAGCAAAATTCAGTAACTTACTGAATAAATGATTTTGCTTTGTACATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541742" ref_strand="+" ref_description="SGN-E541742 [TUS-62-L3](-)">
      <seq>tgctggaccagaccactttaccagcgcgaaggaagcagaaaaggaagacatttatcagttgggaattattctactagaggttattattggtagaccaatcaactctcgaagcgaagcagaagaccttaagcttcaggtggagactgccttatcggaatcaccatcaaagctacgagatttaacagatccttgtatacgaggtacgtttgcatatgactcattgaaaacgacagtccagatagcaataaactgccttgataaagaaccaagcaggcgtccatcagtcgaagacgttctctggcatatgcaatactcaattcaggttcaagaaggagcaactaacagtggaaacctcagtgggaaccaaagtgggaaactcagtggaaaaataagtggaaatcttaataataagttttactgataatagagaactgtcattatattgttatatcttgttgtttagtcatttgtatgcatcttgtacagcacagttcagtaacttactgaataaatgattttctttctacatcaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="61738" stop="60201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61438" g_stop="61415" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61414" i_stop="61304" i_length="111">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.380" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61303" g_stop="61192" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="136" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61191" i_stop="60903" i_length="289">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60902" g_stop="60502" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="536" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="550"/>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E541742" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61438" e_stop="61415"/>
          <exon e_start="61303" e_stop="61192"/>
          <exon e_start="60902" e_stop="60502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGACCAGACCACTTTACCAGGTATTATTCTGCAGCTACATTCACCTTACTTTCTCTGTTTCGTGCTATCATTTCTGAATCATCTCGTGCTATCATTTCTGAATCATCTGCTAATACAAACTTCATATTCAGCGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAGGTATCAATAACAATATCCTTGTAACTCTCAAATGGTAGAAATATATCATATCGTCACTCAACTAATAGTAGTTATTTCAGAAAGTCACTTCTGAAATAATAACGATTAGTTGAGTGAAATCAACTCGAGAATATGAGATATGCGATAAAGAAATTAGAAGAACGCACGCGAATACAAACGTGTTACATGATATGAAGCAACACACATGTCCACATATTACATAAGAGCCTATTCTATTTACAAAATCTATCTAACAACCTTAAACCAAATTGCCTTTTATGACATTCAGGTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAA</genome_strand>
        <mrna_strand>TGCTGGACCAGACCACTTTACCAG...............................................................................................................CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG.................................................................................................................................................................................................................................................................................................GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTT-CTTTCTACATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704024" ref_strand="+" ref_description="SGN-E704024 [FA23AF03]">
      <seq>attagtattgctaagaatcagcttagtggtgctcttccaggaagtgtgtcttgtagcaacaatctaaaatttgtcgatttttcgagtaatttattgattggaaagttgcctacttgtcttggatcaagttcaagaaacaggacagtgattaatgtttggaattgtttgtcaagtactagtactaagtctcaacatccacatacattttgtgagaaacaagctatagctgttaagccccctccaagaactagtggtgaaaaggaacaatccacagttaagcttggtgttgttttaggacttattgctggtattgttgtagttgtgggtgcatttggtttgctgatctttttcattgtgaagaaggttatgagaaatagagttgaaagttatagaaatgacagctttgcttttgagaagaattcaaccctttcaaaaactactgatggagggaaggcaaggaggacaatgagaatggtatcattaggacttccaccatatcatgttttcactttagaggaaatggaagaagcaacaaacagttttgatccaactaatctggttggagaaggttcccagggtcagctatatagaggttggcttagagatggatcagtggtcctagtaaaatgtctgaaattgaagcagaagcattcacctcaaattctgcagcagcacatggagatgatatcaaagctaaggcatcgacatttagtcagtgttcttggacactgtgttgttacttaccaagatcatccaaatacagctagcactgtatttattgtgcttgaaaacgtcgtcaatggatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="63633" stop="61629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63333" g_stop="62886" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62885" i_stop="62598" i_length="288">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62597" g_stop="62464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="582" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62463" i_stop="62156" i_length="308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62155" g_stop="61929" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="809" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E704024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63333" e_stop="62886"/>
          <exon e_start="62597" e_stop="62464"/>
          <exon e_start="62155" e_stop="61929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAGGTATATTTCCTTAATGAATCTTGAATAATGATAAGGGTCTATCGGAAATAGCCTCTCTACCTCCCGAGGTAGGGGTAAGGTCTGCGAACACTCCCCCGCTAGACCCCACACACTGTGTATGTTGTTGTTGTTGAATCTTGAATAGTGATATCGGAAACAACCTCTCTACCTCCCTAGGCAGGGGTAAGGTCTGACCCCACTTGTGGAATTACGCGGGGTATGTCGTTGAATCTTGAATAGTGATAGTGCATCATTATGACAATTTTTTCGATAACTTGATTTAATCAGGGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAGGTAAAAATGTTGATTCATTATAAAAAGCAAAATGAAAATGATATTTATTACTATATCCTGTCCATATTATTCGTCATTTTGGACGTTGAACGATTCGAATCTAGTCAAATACATAATCTACATGAGTATACGAGTCCGTAGATACTCATATTGCTATACTTTTAGTCTAGACCCAAAAAGTCAGACCCGAACAACTGTTGACATTTTAGAAAAACTAAAGATAGTAATATGGATATGCTTTTCATAAATCTTGGTGAATACAAACTTTGTGTTTTGAACATTGGGATTGATGTTATTATTAATGACAGCTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</genome_strand>
        <mrna_strand>ATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG................................................................................................................................................................................................................................................................................................GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG....................................................................................................................................................................................................................................................................................................................CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319194" ref_strand="+" ref_description="SGN-E319194 [cTOB-16-D6]">
      <seq>ttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttaggaccaaagtttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaacttgttggtccaatgcctgcttttctgttttcacttccagcaattcagtctattagtattgctaagaatcagcttagtggtgctcttccaggaagtgtgtcttgtagcaacaatctaaaatttgtcgatttttcgagtaatttattgattggaaagttgcctacttgtcttggatcaagttcaagaaacaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64011" stop="62890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63711" g_stop="63190" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E319194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63711" e_stop="63190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACA</genome_strand>
        <mrna_strand>TTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707818" ref_strand="+" ref_description="SGN-E707818 [FA34AC04]">
      <seq>atcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgatgtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttaggaccaaagtttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaacttgttggtccaatgcctgcttttctgttttcacttccagcaattcagtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64507" stop="63031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64207" g_stop="63331" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E707818" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64207" e_stop="63331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATT</genome_strand>
        <mrna_strand>ATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGATGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304468" ref_strand="+" ref_description="SGN-E304468 [cLEX-12-F14]">
      <seq>acattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgttttagctagaaatttgtttaatggaagtgtaccagatctgaaagggttaaagttacttgaagagttggatttgagtggtaataatttacgaccaaaggttccatctttaggtgattacaataacaataatcttgtctcattgaatttgagtaacaatttctttagatcagaaatacctaatggattcaacaagtttactcatttgcaaaatcttgatttgtcttctaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64009" stop="63084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63709" g_stop="63384" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E304468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63709" e_stop="63384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAAC</genome_strand>
        <mrna_strand>ACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTACGACCAAAGGTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316494" ref_strand="+" ref_description="SGN-E316494 [cTOA-25-K21]">
      <seq>ctgtttcttggtttgcttttgatttttcaagttccattttcatcttctcagttagttcctgcagaaagaaaaatcctttttcaaattcaacaattatcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttgataacaaaaaatccccttttgaatctttaaaatcctcatctccacaagcccgttctgggaaattttcaattgattcatttttcactggtgatactaagctttctagtgtaaaaaaactatctttagagtctcttggtttgaggggatcattgcctgctaagattagtaggttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttggtttagctagaaatttgcttaatggaagtgtaccagatctgaaagggctaaagttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64397" stop="63258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64098" g_stop="63558" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E316494" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64098" e_stop="63558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTT-TCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTG</genome_strand>
        <mrna_strand>CTGTTTCTTGGTTTGCTTTTGATTTTTCAAGTTCCATTTTCATCTTCTCAGTTAGTTCCTGCAGAAAGAAAAATCCTTTTTCAAATTCAACAATTATCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGATAACAAAAAATCCCCTTTTGAATCTTTAAAATCCTCATCTCCACAAGCCCGTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGGTGATACTAAGCTTTCTAGTGTAAAAAAACTATCTTTAGAGTCTCTTGGTTTGAGGGGATCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGGTTTAGCTAGAAATTTGCTTAATGGAAGTGTACCAGATCTGAAAGGGCTAAAGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312697" ref_strand="+" ref_description="SGN-E312697 [cTOA-8-E3]">
      <seq>tattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgaggtacttaatattagttcaaatttcattcttggtgagattccatcatctatagtgaatttaaagaacctgaaatctcttgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64528" stop="63313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64228" g_stop="63613" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E312697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64228" e_stop="63613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTA</genome_strand>
        <mrna_strand>TATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298154" ref_strand="+" ref_description="SGN-E298154 [cLEW-9-G6]">
      <seq>tctattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggattgtttttgttttttcaagttccattttcatcatctcaggtagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctctctagtttaaaaaagctatctttagtgtctcttggtttgtggggttcattgcctgctaagattagtaggttacattcacttgaggtacttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64530" stop="63387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64230" g_stop="63687" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E298154" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64230" e_stop="63687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATA</genome_strand>
        <mrna_strand>TCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGATTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGGTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTCTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334783" ref_strand="+" ref_description="SGN-E334783 [cTOE-3-B10]">
      <seq>aagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggttcgttttcggtttttcaagttccattttcatcatctcagttagttcctgcacaaagtggaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacaaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcatttttcactgttgttactaagctttctagtttaaaaaagctatctttagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64447" stop="63452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64147" g_stop="63752" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E334783" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64147" e_stop="63752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTC</genome_strand>
        <mrna_strand>AAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTCGTTTTCGGTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCACAAAGTGGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322556" ref_strand="+" ref_description="SGN-E322556 [cTOB-26-B10]">
      <seq>ttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctgcagaaagtagaatcctttttcaaattcaacagtttcttgaaaatccacctgttcttcaacaatggaataaatggacnaatttttgttttatcccacaatctccttctcttgttatcacttgttctggtaatcatataactgagttaacaattgttggtaacaaaaaatccccttttgagtctttaaaatcctcatctccacaagccctttctgggaaattttcaattgattcttttttcactgttgttactaagctttctagtttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64516" stop="63469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64216" g_stop="63769" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E322556" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64216" e_stop="63769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATG-AAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAA</genome_strand>
        <mrna_strand>TTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACNAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCTTTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541745" ref_strand="+" ref_description="SGN-E541745 [TUS-62-L3]">
      <seq>ctcactctattatagattcttgaattatatcattcttcaacttcacaaaaaaattttaaaaaaagtgctcactcttttgtgagctcaaaagattgttttttttggggattttgagtcttttagctatgaagggtgtgttgtttcttggtttgtttttgttttttcaagttccattttcatcatctcagttagttcctggagaaagtagaatcctttttcagattcaacagtttcttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="64535" stop="63694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64235" g_stop="63994" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-E541745" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64235" e_stop="63994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAAT</genome_strand>
        <mrna_strand>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGGAGAAAGTAGAATCCTTTTTCAGATTCAACAGTTTCTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736366" ref_strand="+" ref_description="SGN-E736366 [LC05CA09]">
      <seq>cgaataaactttaccctgcttgttgttgagtgccgtttgtctctttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="70430" stop="75592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70728" g_stop="70806" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70979" g_stop="71024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="125" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72130" g_stop="72237" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="233" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72898" g_stop="73179" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="515" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74136" g_stop="74336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="716" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74842" g_stop="74922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="797" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75247" g_stop="75292" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="843" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E736366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70728" e_stop="70806"/>
          <exon e_start="70979" e_stop="71024"/>
          <exon e_start="72130" e_stop="72237"/>
          <exon e_start="72898" e_stop="73179"/>
          <exon e_start="74136" e_stop="74336"/>
          <exon e_start="74842" e_stop="74922"/>
          <exon e_start="75247" e_stop="75292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATG</genome_strand>
        <mrna_strand>CGAATAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740006" ref_strand="+" ref_description="SGN-E740006 [LC19CG10]">
      <seq>aacaaactttaccctgcttgttgttgagtgccgtttgtctctttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatggtcaagaggagccaaattctagtcaggaatggcttgtccgttggactatatcacagatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="70430" stop="75655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70730" g_stop="70806" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70979" g_stop="71024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="123" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72130" g_stop="72237" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="231" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72898" g_stop="73179" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="513" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74136" g_stop="74336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="714" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74842" g_stop="74922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="795" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75247" g_stop="75355" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="904" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E740006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70730" e_stop="70806"/>
          <exon e_start="70979" e_stop="71024"/>
          <exon e_start="72130" e_stop="72237"/>
          <exon e_start="72898" e_stop="73179"/>
          <exon e_start="74136" e_stop="74336"/>
          <exon e_start="74842" e_stop="74922"/>
          <exon e_start="75247" e_stop="75355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</genome_strand>
        <mrna_strand>AACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329041" ref_strand="+" ref_description="SGN-E329041 [cTOC-24-I22]">
      <seq>tttactctcttcttcttgaagatgagcaaagaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgagaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacanggacttgaaaaacaggatgccaaacaattggattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="70471" stop="75163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70771" g_stop="70806" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70979" g_stop="71024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="82" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72130" g_stop="72237" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="190" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72898" g_stop="73179" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="472" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74136" g_stop="74336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="673" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74842" g_stop="74863" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="695" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E329041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70771" e_stop="70806"/>
          <exon e_start="70979" e_stop="71024"/>
          <exon e_start="72130" e_stop="72237"/>
          <exon e_start="72898" e_stop="73179"/>
          <exon e_start="74136" e_stop="74336"/>
          <exon e_start="74842" e_stop="74863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATC</genome_strand>
        <mrna_strand>TTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACANGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717587" ref_strand="+" ref_description="SGN-E717587 [FC02AF10]">
      <seq>tcggccgaattgcttgaagatgagcaaacaaatgttaaacaagggtttttgttaaagttacaatctttgctctgtttgaggttcttacgttgtgggcaatcaaacttattactatgggaaaatctcctggaaagtggctcaggtcattgttgccagggaaaaagtcttccaaatctggcacatcaaagaaatcttcaaatgagaaagcatctgtaatttccaccaatgcggcattgtccggttcgtctgtccatctgccattgatatctgaaccagttgcttgtaatgctggtggaataaaagaagactcgaactttgagaaaggaggggtcactaatgaggtgattctcccttctatcgagcgagatggagacgaacagaatacttgtcttaccttacctgaggatactgaaaaaatgaggcttgagcaagcagctacaaaggcacaagctattgttaggggttatctggctcgccgagcatttcttaggctcaaggggaccataaggctacaagctgcagtacgtggccatctggtcagaaggcaggctgttgctacattatactgtatacatggcattgtcaaacttcaagcaaatatccgtggccagattgctagacgttccagtattggctgtgaactaataaccaaacaaggacttgaaaaacaggatgccaaacaattggattatcagagagctaatgcatccaaactagcacgggagctatccactaacggattcactacaaagctacttgcttcattacctactggaatgcctctacacctccattatggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="70483" stop="75596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70792" g_stop="70806" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="34" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70979" g_stop="71024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="80" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72130" g_stop="72237" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="188" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72898" g_stop="73179" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="470" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74136" g_stop="74336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="671" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74842" g_stop="74922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="752" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75247" g_stop="75296" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="802" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E717587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70792" e_stop="70806"/>
          <exon e_start="70979" e_stop="71024"/>
          <exon e_start="72130" e_stop="72237"/>
          <exon e_start="72898" e_stop="73179"/>
          <exon e_start="74136" e_stop="74336"/>
          <exon e_start="74842" e_stop="74922"/>
          <exon e_start="75247" e_stop="75296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCAAAGAAATGGTGAATTCTCTCTCTTCATAACTTCATACTTATCTATGAACTCATTTTTTCAGATCTTTCAGTAAATAAAGTTTGATTTTTTTAGCTGTTTTTTTTGGTTGTATGTACTTTTTCTCTTGACCCTTTTCATTTTTAGACATCTTTTTGCTAAATTCATTTTTATTTCTTGCAGTTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAGGTAAGTTGTAGATCCAATGTACTTCAGGTTTTGATTTATAATGTTGGATTCTTGAGCTTACTCTGAAGCTAATGGAGAATACTGATTGCATTTTCTTTTTGTTGTAAAATAGTTAGAGGTAATGTTTGTTACTTATATGTGCAAGGTTTAATCTCTGTTTACTCAACTTGTTTCAACATTGTTGCATTTGGGGCTCTGATTTTATTTTGAAATTGGATGTCCTCAAAGACTATGAAGCTTGGACTCTCCAAAGTTGTTGCTTACCGGTGTCGGATTTTCCAAAAAATTGTGTATTTTTGGAGTGTCTGACATGCAACTATTGATGTTCCCGAAGAGTCGGAGCAACATAGCTGAAAGATGTAGCTGGAGTGCTTTGGTGGTAGGGTTTTCTGCTGCAGGGTATTGCTACACTTGCTAAATTTCTTAGGAATTAGATAAAAATATCACCTTGTTGGTTTCTTGTGTATCCATTTTATTGGATTTTCAATCCAATGTGTTATAGGTGATACCAGGGTTAGAGTAATTTAAGCTTTCCCTTCTCCATTCCCAAGCCACAACGGAGGATAGGAACACAACTAGAGGCGAATCCAAGATTAAACATCTATTGGGCTCAATCTTTAAGATTTTTAGTGTCCATTATTGTTTTGAAATTATGGGTTCAGACCTTCTATCTTAGTAAACTTTTGCATATAAGTTTACGTTGCGCATCAAAGTAATGGGTTCAGATGAACCCAGTGTTTGCAGGCTTGCTGCATCTGCCCCTGACACAACGAAGGAAGTTTCTGTATTACACTCATTAAGTCTGCCAAGCATCTGATTCTCCTCTACTGGAAGAGATTCTTTGTATAGTCCCCATTGGATAGGTGTTGAATTCATGAATGTTACATGAGAGAAGATCACTTGAGATGGTTTGGTCATGTCCACGTCGATATCTAGATGCACTAGTTTGTATGTGTGACCATAGTTAGTGAAAATGTTACATGTGATGAGGTAAACTCAAATCACATGGTAAAAAGTTGTCTGGAAAACCTGAATCTTTTGGAATCCATGCATGTGCTTACTCGATATAGAGCTCTTTTGAACCTTCCAGACTTATTATTCACAGGTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAGGTAGGAGATATGATCCTATTTTGTTTTGAATTGAATTATCCCTCTGGTTCTGCCTTTTTCTTATTATCTGCCTGCTTTGTAGTAAAGTGGATTTGTCCATATTTCTTTTTGGTTTGTCAAGAGTTGAAAGCTAGTTTTGTACTTCTGTTTGTGCGAAATTGCTACTACTTTATTGTTCAGTGGATTCACTAGTAGCTAACATTTTGCTCTTTCTGCAATAGAAGTGGATAAGGTTTATACTGAGAAATGTAAAATTGGTGCCATTAGAATTTTTCTCATCTCATCAGAACAATAAAAATTAAAATTGTTGCCTGGAGAACCTTCATGGCGTAAGGCCATAACCCATGGTAGTACTTTTTGGGAGTGGACATTCTTTTGAGGCAAGCCATAAGGCGAGCTGTCTACTTACTTTGGTGAATAACATTCATGAAAATGAACCTTGTGTTCTGCCCTAATGTCAATACCTATGGTCGCTAGCCACGAAAACAGTATTATCATCACAATGCAATAAACTTGAACAGGGCAACTAGTAAATGATATGTTTCTTTGAGAGCAATTTTCCACAAGCATTACTTGTTTCTGCTTATCTTCCTATGTGGGGTTTATTTTATTCATATTATTTCTATTAAGTTATTTTAATCTCTGTTTCTTTCTTTAAAGAAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTGGTAATTACTTTACCATATTGATTTACTGGTGTCTTAAAATATTATTGTTTTTTTGTGTTTTTATTACAATTTGAGGAATTATGTTTGTTTTCGGCAAGCTTTGTCTGCTACCTTTTGATGTCTTCCCCTTCCACTTCAATATTGTGGCAGCGAGTTACTTTCACAGCTTTTTACTCTACTATGCTTGTTTCTTGTGGTTAATGAATGTACGAGCTGATTTTATTTCTATTATTCTTTCAGCCAACATATATGAATAGGTTTTGATTTCTGTTTAAATGGTTAGAGACAACTGACAACTGTTAGATGTTTAGAGACTGGAAGTTGTAGCATCTGCTAGTTTTTCTCTTAGTTTAACCTAAACAAGACATGCAATTGTCCATGTTTGTTTAGTAGGGTTTGTCTATATAAACTATTCTTTTGCACAAAGGTGCGGAATGCCGGAATTTTTTTGAATATTTTACAAGTCTATATTGTAAAGATGTGAACAACTTCCTAAGAATGGAAGTTATGCTACATTAAAATTGCTAGAAAATGATCTCTTGTGAGTCATAAATCTTGGAAAATGACTATCATCAGCAAGCTCTTATACTACCCACAAATGGGTTTACCAGTAGCTCCAAAGTCACTTTGAATCTACGCGTTGATAACATTTGGATTCTTGCAACCCTTGAAGGTCTTAATGGTTTTCTTGATAATGTTCACCGAATGGCTTTGAATAGTGCTTTCCCGATGAGATCCATTTTTGACTTTATGTGACTAATACTTTAACATTTTCTCTGTTCATGTGTTTCCTTAATTTTGCAAATGATGTGAGTGTTATGGAAGGACTTTACTACTTACATCTGACATGATCTTGCTAACTTTGATGTTTAAGAACATTTTCTATGACAATGGGCTAATATCTAATTTAACTTGAACATTTAACCTGTACTGATGCCGATATGGTCTTTCTGAAGGCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAGGTAAACTACCAAACTGACTTTTTAAAATTTATTATTCCTTGTGCCCCAATTTATGTGAAGGTGTTTGAAAGAAAGATTTGAAATTTGTGTCTTGAGTCTAAACGAGCCTGAGAAATTTTTGCTGCTATAATCATTTAATCAAGGGTAAATTGGAAATTTTAAAATTGTATTGTTACTAAATATAAAAATGTCATTCTTTTCGAGACTCACTGAAAGGAAGTGCATCACATAAATTGGAACTGAGGGAGTACTTTGATCCCTCACGACATGGTGAAGGATGATGGGCTCACGCCATGTGAGCTACCCTCCAACACAACCAAATTGAGTCTTTTAATTGACTTAATGGTATCTAGTCTTATAATGATTTGAAATAACGTCTAGGAATCCATGTTATTTAGACTATATGCTGCCAAGAGTGTTCAATGTACCATTTTTTATAACTGTTCTGCTATGAGTCTTGACTTGCTCGATGGTTTATAATTTTTTCTGATACCTTCATCATTAGGATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAGGTAAACATCAAACTTCTCACCATTATTTCTTGCTTTTTTTTAGTACTGTTCCTGCATTATCTGGACCTAGAGGGAAGAATATGCCCATAAGACAAGTGGTTATCCTTAAATAACCAAAAAAAGATACCCAGATATTGAAGTTCTGCATACGTGAAAGCTCCCCTTACTGTTAAAATTAGTATTTTTTTAGATTTGAGGCATCAAGTGCAAAAGAATGTCCCATTTGAATTTGGAAGTACCAAATTTTCTCGTTTTTACTTGGTTGTTGTTACTATAGTTGACTGATACACTGATTGAACAATCTTTCCATATGGTATGTTTCAGCTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCA</genome_strand>
        <mrna_strand>ATGAGCAAACAAATG............................................................................................................................................................................TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAAAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG....................................................................................................................................................................................................................................................................................................................................CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371983" ref_strand="+" ref_description="SGN-E371983 [TUS-30-G20]">
      <seq>tccgggaaaaaaaacatcaaaatgctgaagcagacattgctatgtcaaagcacagtgtaaggaaagtacattctaaaaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaatgaggatttttgtactaaccatgataataatgaaggaagtgagagcaacaaggttaacagaagagtttctttacctgcaaagcatgatgtcgatgcaagtacacccacaacaagaaaggtgcccagctacatggctccaaccaagtctgctaaagctaagctgaaagagcaagcctcaccaaggtttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="75081" stop="76363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75381" g_stop="76063" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E371983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75381" e_stop="76063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGG-AAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGC</genome_strand>
        <mrna_strand>TCCGGGAAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAAGAGCAAGCCTCACCAAGGTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283132" ref_strand="+" ref_description="SGN-E283132 [cLER-17-O7]">
      <seq>tccgggaaaaaaaacatcaaaatgctgaagcagacattgctatgtcaaagcacagtgtaaggaaagtacattctaaaaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="75081" stop="76172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75381" g_stop="75872" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E283132" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75381" e_stop="75872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGG-AAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAA</genome_strand>
        <mrna_strand>TCCGGGAAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371982" ref_strand="+" ref_description="SGN-E371982 [TUS-30-G20](-)">
      <seq>aaaaatgcagaacggttcaaatcattccacttcttcggggtcagaaaagaagaaatcaagtcatttggtaaactctgttcttcagaatccaggaagtgagattaagaaggtaaaacatagtttaaagaaaacgtccagccctatattggaaaaaccagttcagtctgaggttgacactgagcgaaaaaggcaaagtcatgacaaatcatcaagcatggcatctgatgaaccattgaaaaattcagaagggacagttgaaaattctactaatgtggccccacctcccgtagtggtggacgatactatcactcatttggatatcctttctgtatctgatactcatcacaaatcgactactgatgctgcggatcagaaatcgatcactgataacagagaggatgatactcctgtcgcgaatgaggatttttgtactaaccatgataataatgaaggaagtgagagcaacaaggttaacagaagagtttctttacctgcaaagcatgatgtcgatgcaagtacacccacaacaagaaaggtgcccagctacatggctccaaccaagtctgctaaagctaagctgaaggagcaagcctcaccaaggtttgggcaagatgtggctgagaagaatgccgtaaccagacgtcattctttaccgtcccctatgaatggaaagcttagttcatcaccatcaccacgggtgcagaggctggtccaagctagtgctaaagaaggaatcaagatcgacagatctttatcgtcttcaagggatggtactgataagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="75156" stop="76539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75456" g_stop="76231" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E371982" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75456" e_stop="76231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</genome_strand>
        <mrna_strand>AAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTTAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="96966" stop="98214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97266" g_stop="97914" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97266" e_stop="97914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATAGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTACCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCTAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="96967" stop="97951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97267" g_stop="97651" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97267" e_stop="97651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATAGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTACCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="97625" stop="99032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97925" g_stop="98732" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97925" e_stop="98732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCCTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>140</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2425" PGL_stop="3878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2425" e_stop="2661"/>
            <exon e_start="2736" e_stop="2839"/>
            <exon e_start="3548" e_stop="3878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="0.987"/>
          <exon-intron don_prob="0.710" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="2425" e_stop="2661" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="2662" i_stop="2735" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2736" e_stop="2839" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.710" acc_prob="0.991">
            <gDNA_intron_boundary i_start="2840" i_stop="3547" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="3548" e_stop="3878" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2425" stop="2661"/>
              <exon start="2736" stop="2839"/>
              <exon start="3548" stop="3825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2612" stop="2661"/>
              <exon start="2736" stop="2839"/>
              <exon start="3548" stop="3878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244976" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATCACCAATGAGTCCCTTCATTGGTTCTTCTGATTTTACGGAGAGAGTGAGTATTGATAAGCAAATTAGTGCTGCTCCGAGCAATAGCTCGGTATCAGTAAATCAAGTACCGGAAGGGAAAAATCTTTCTCAATCAGTTTCATTTAGTGAGAGAGCCACTCCCATACCTGATGTGCTTCCAAGTGGCGATTCAGGTTGTACACATCTATGGTTGCAGAGCAGAGTTCCCTTGGG : ATGTGTGCCCGCTCAATCTACAGCAACCATCAAACTTGAAGTACTTCCCCTGACGGATGGTATAATCACACTTGATTCTTTACAGATTGATGTAAAGGAGAAAG : GTGTGACATATGTTCCTGAGCATTCTCTGAAGATCAATGCAACTTCAAGCATTTCCACTGGGATTATCTGAGGTGACTATTTACAGTTTTCAGACGTCGTAAGTGGACAGAAAGATACTCATAGTGGTAGTGTCATACGTAGATGATATCGTGAGTTTGATGTAAATTTGAGGAGTCCCTTTGATGTGTGATGATTTTGTGTAGATTTATAAAATGCCAAAGGTGAGAATGGATTATGTGAAGGGATTGTGACTGTACCTTATTGTAGATGATGTTATGTTCAATTTGAAGTACCAACTAGGGGGAAAATTGAAAAGCAAATGATAAGGAT</gDNA_template>
            <first_frame> D  I  T  N  E  S  L  H  W  F  F  *  F  Y  G  E  S  E  Y  *  *  A  N  *  C  C  S  E  Q  *  L  G  I  S  K  S  S  T  G  R  E  K  S  F  S  I  S  F  I  *  *  E  S  H  S  H  T  *  C  A  S  K  W  R  F  R  L  Y  T  S  M  V  A  E  Q  S  S  L  G  :  M  C  A  R  S  I  Y  S  N  H  Q  T  *  S  T  S  P  D  G  W  Y  N  H  T  *  F  F  T  D  *  C  K  G  E  R :   C  D  I  C  S  *  A  F  S  E  D  Q  C  N  F  K  H  F  H  W  D  Y  L  R  *  L  F  T  V  F  R  R  R  K  W  T  E  R  Y  S  *  W  *  C  H  T  *  M  I  S  *  V  *  C  K  F  E  E  S  L  *  C  V  M  I  L  C  R  F  I  K  C  Q  R  *  E  W  I  M  *  R  D  C  D  C  T  L  L  *  M  M  L  C  S  I  *  S  T  N  *  G  E  N  *  K  A  N  D  K  D </first_frame>
            <second_frame>  T  S  P  M  S  P  F  I  G  S  S  D  F  T  E  R  V  S  I  D  K  Q  I  S  A  A  P  S  N  S  S  V  S  V  N  Q  V  P  E  G  K  N  L  S  Q  S  V  S  F  S  E  R  A  T  P  I  P  D  V  L  P  S  G  D  S  G  C  T  H  L  W  L  Q  S  R  V  P  L  G :   C  V  P  A  Q  S  T  A  T  I  K  L  E  V  L  P  L  T  D  G  I  I  T  L  D  S  L  Q  I  D  V  K  E  K   : G  V  T  Y  V  P  E  H  S  L  K  I  N  A  T  S  S  I  S  T  G  I  I  *  G  D  Y  L  Q  F  S  D  V  V  S  G  Q  K  D  T  H  S  G  S  V  I  R  R  *  Y  R  E  F  D  V  N  L  R  S  P  F  D  V  *  *  F  C  V  D  L  *  N  A  K  G  E  N  G  L  C  E  G  I  V  T  V  P  Y  C  R  *  C  Y  V  Q  F  E  V  P  T  R  G  K  I  E  K  Q  M  I  R   </second_frame>
            <third_frame>   H  H  Q  *  V  P  S  L  V  L  L  I  L  R  R  E  *  V  L  I  S  K  L  V  L  L  R  A  I  A  R  Y  Q  *  I  K  Y  R  K  G  K  I  F  L  N  Q  F  H  L  V  R  E  P  L  P  Y  L  M  C  F  Q  V  A  I  Q  V  V  H  I  Y  G  C  R  A  E  F  P  W   : D  V  C  P  L  N  L  Q  Q  P  S  N  L  K  Y  F  P  *  R  M  V  *  S  H  L  I  L  Y  R  L  M  *  R  R  K  :  V  *  H  M  F  L  S  I  L  *  R  S  M  Q  L  Q  A  F  P  L  G  L  S  E  V  T  I  Y  S  F  Q  T  S  *  V  D  R  K  I  L  I  V  V  V  S  Y  V  D  D  I  V  S  L  M  *  I  *  G  V  P  L  M  C  D  D  F  V  *  I  Y  K  M  P  K  V  R  M  D  Y  V  K  G  L  *  L  Y  L  I  V  D  D  V  M  F  N  L  K  Y  Q  L  G  G  K  L  K  S  K  *  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2426" stop="2661"/>
                    <exon start="2736" stop="2839"/>
                    <exon start="3548" stop="3618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPMSPFIGSSDFTERVSIDKQISAAPSNSSVSVNQVPEGKNLSQSVSFSERATPIPDVLPSGDSGCTHLWLQSRVPLGCVPAQSTATIKLEVLPLTDGIITLDSLQIDVKEKGVTYVPEHSLKINATSSISTGII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6994" PGL_stop="9721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6994" e_stop="7647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="6994" e_stop="7647" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6994" stop="7647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7014" stop="7518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7014" stop="7509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7014" stop="7507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7026" stop="7503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7190" stop="7557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATTCAAAACATAAACCCCAGATTCAATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATTATAGACTGATTGAAGAGCCTATCTGGTTTAATTATATATAGTTATTATAAAAATTAAGAAGGTTATTAATCTTGTTATTTACAATTATGTTGAGTTTATATGCATATATATATATATATATATATATATATATATATATATATGAAAATTCAAATT</gDNA_template>
            <first_frame> N  Y  S  K  H  K  P  Q  I  Q  F  F  L  K  K  K  H  I  P  N  G  L  F  Y  Y  *  L  F  F  M  E  I  H  V  L  N  S  H  I  I  S  C  S  W  L  C  F  F  S  E  N  I  V  D  D  E  F  K  R  *  R  R  L  Y  T  I  F  R  T  I  S  K  I  *  R  R  L  Y  T  I  F  R  I  I  S  E  I  L  R  *  K  *  K  E  R  V  S  K  E  *  F  V  S  Y  A  T  K  R  D  S  N  S  S  F  W  T  I  T  *  T  Q  W  R  W  *  L  I  *  L  S  L  K  V  N  *  L  L  N  N  K  E  *  L  C  Y  N  H  I  *  F  H  L  D  I  I  F  H  N  M  I  C  N  N  T  I  I  I  D  *  L  K  S  L  S  G  L  I  I  Y  S  Y  Y  K  N  *  E  G  Y  *  S  C  Y  L  Q  L  C  *  V  Y  M  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  M  K  I  Q  I </first_frame>
            <second_frame>  I  I  Q  N  I  N  P  R  F  N  F  F  *  K  K  N  I  F  L  M  A  Y  S  T  T  N  Y  S  S  W  K  F  M  Y  L  I  L  T  L  S  L  V  L  G  Y  A  S  S  V  R  I  S  S  T  M  N  S  K  D  E  D  A  Y  T  L  F  S  E  P  S  P  K  Y  E  D  A  Y  T  L  F  S  E  S  S  P  R  Y  Y  D  E  N  E  K  K  E  F  Q  K  S  N  L  F  H  M  L  P  K  G  T  L  I  P  P  S  G  P  S  R  R  H  N  G  D  G  D  L  S  N  Y  P  *  K  L  I  N  C  L  I  I  K  N  N  Y  V  I  I  I  Y  S  F  I  W  I  *  Y  F  I  T  *  Y  V  T  I  L  L  L  *  T  D  *  R  A  Y  L  V  *  L  Y  I  V  I  I  K  I  K  K  V  I  N  L  V  I  Y  N  Y  V  E  F  I  C  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  K  F  K   </second_frame>
            <third_frame>   L  F  K  T  *  T  P  D  S  I  F  F  K  K  K  T  Y  S  *  W  L  I  L  L  L  I  I  L  H  G  N  S  C  T  *  F  S  H  Y  L  L  F  L  A  M  L  L  Q  *  E  Y  R  R  R  *  I  Q  K  M  K  T  L  I  H  Y  F  Q  N  H  L  Q  N  M  K  T  L  I  H  Y  F  Q  N  H  L  R  D  I  T  M  K  M  K  R  K  S  F  K  R  V  I  C  F  I  C  Y  Q  K  G  L  *  F  L  L  L  D  H  H  V  D  T  M  E  M  V  T  Y  L  I  I  L  K  S  *  L  I  A  *  *  *  R  I  I  M  L  *  S  Y  I  V  S  F  G  Y  N  I  S  *  H  D  M  *  Q  Y  Y  Y  Y  R  L  I  E  E  P  I  W  F  N  Y  I  *  L  L  *  K  L  R  R  L  L  I  L  L  F  T  I  M  L  S  L  Y  A  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  E  N  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7034" stop="7387"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNIFLMAYSTTNYSSWKFMYLILTLSLVLGYASSVRISSTMNSKDEDAYTLFSEPSPKYEDAYTLFSESSPRYYDENEKKEFQKSNLFHMLPKGTLIPPSGPSRRHNGDGDLSNYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7022" e_stop="7491"/>
            <exon e_start="9661" e_stop="9721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.985"/>
          <exon-only e_score="0.754"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="7022" e_stop="7491" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7492" i_stop="9660" i_length="2169"/>
          </intron>
          <exon e_serial="2" e_score="0.754">
            <gDNA_exon_boundary e_start="9661" e_stop="9721" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7022" stop="7491"/>
              <exon start="9661" stop="9721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTTTTAAAAAAAAAACATATTCCTAATGGCTTATTCTACTACTAATTATTCTTCATGGAAATTCATGTACTTAATTCTCACATTATCTCTTGTTCTTGGCTATGCTTCTTCAGTGAGAATATCGTCGACGATGAATTCAAAAGATGAAGACGCTTATACACTATTTTCAGAACCATCTCCAAAATATGAAGACGCTTATACACTATTTTCAGAATCATCTCCGAGATATTACGATGAAAATGAAAAGAAAGAGTTTCAAAAGAGTAATTTGTTTCATATGCTACCAAAAGGGACTCTAATTCCTCCTTCTGGACCATCACGTAGACACAATGGAGATGGTGACTTATCTAATTATCCTTAAAAGTTAATTAATTGCTTAATAATAAAGAATAATTATGTTATAATCATATATAGTTTCATTTGGATATAATATTTCATAACATGATATGTAACAATACTATTATT : ATAAAAATAAAATAATAAAGAAACAAGGAAAAGAAAAAATGATGAAAAAAAAGGGAAAAAA</gDNA_template>
            <first_frame> N  F  F  *  K  K  N  I  F  L  M  A  Y  S  T  T  N  Y  S  S  W  K  F  M  Y  L  I  L  T  L  S  L  V  L  G  Y  A  S  S  V  R  I  S  S  T  M  N  S  K  D  E  D  A  Y  T  L  F  S  E  P  S  P  K  Y  E  D  A  Y  T  L  F  S  E  S  S  P  R  Y  Y  D  E  N  E  K  K  E  F  Q  K  S  N  L  F  H  M  L  P  K  G  T  L  I  P  P  S  G  P  S  R  R  H  N  G  D  G  D  L  S  N  Y  P  *  K  L  I  N  C  L  I  I  K  N  N  Y  V  I  I  I  Y  S  F  I  W  I  *  Y  F  I  T  *  Y  V  T  I  L  L  L :   *  K  *  N  N  K  E  T  R  K  R  K  N  D  E  K  K  G  K  K </first_frame>
            <second_frame>  I  F  F  K  K  K  T  Y  S  *  W  L  I  L  L  L  I  I  L  H  G  N  S  C  T  *  F  S  H  Y  L  L  F  L  A  M  L  L  Q  *  E  Y  R  R  R  *  I  Q  K  M  K  T  L  I  H  Y  F  Q  N  H  L  Q  N  M  K  T  L  I  H  Y  F  Q  N  H  L  R  D  I  T  M  K  M  K  R  K  S  F  K  R  V  I  C  F  I  C  Y  Q  K  G  L  *  F  L  L  L  D  H  H  V  D  T  M  E  M  V  T  Y  L  I  I  L  K  S  *  L  I  A  *  *  *  R  I  I  M  L  *  S  Y  I  V  S  F  G  Y  N  I  S  *  H  D  M  *  Q  Y  Y  Y   : Y  K  N  K  I  I  K  K  Q  G  K  E  K  M  M  K  K  K  G  K   </second_frame>
            <third_frame>   F  F  L  K  K  K  H  I  P  N  G  L  F  Y  Y  *  L  F  F  M  E  I  H  V  L  N  S  H  I  I  S  C  S  W  L  C  F  F  S  E  N  I  V  D  D  E  F  K  R  *  R  R  L  Y  T  I  F  R  T  I  S  K  I  *  R  R  L  Y  T  I  F  R  I  I  S  E  I  L  R  *  K  *  K  E  R  V  S  K  E  *  F  V  S  Y  A  T  K  R  D  S  N  S  S  F  W  T  I  T  *  T  Q  W  R  W  *  L  I  *  L  S  L  K  V  N  *  L  L  N  N  K  E  *  L  C  Y  N  H  I  *  F  H  L  D  I  I  F  H  N  M  I  C  N  N  T  I  I  :  I  K  I  K  *  *  R  N  K  E  K  K  K  *  *  K  K  R  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7034" stop="7387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNIFLMAYSTTNYSSWKFMYLILTLSLVLGYASSVRISSTMNSKDEDAYTLFSEPSPKYEDAYTLFSESSPRYYDENEKKEFQKSNLFHMLPKGTLIPPSGPSRRHNGDGDLSNYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15359" PGL_stop="23144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15359" e_stop="15604"/>
            <exon e_start="17236" e_stop="17570"/>
            <exon e_start="17676" e_stop="17811"/>
            <exon e_start="19969" e_stop="20105"/>
            <exon e_start="20182" e_stop="20305"/>
            <exon e_start="20677" e_stop="21450"/>
            <exon e_start="22843" e_stop="22850"/>
            <exon e_start="23115" e_stop="23144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.567"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15359" e_stop="15604" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.938">
            <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17236" e_stop="17570" e_length="335"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17571" i_stop="17675" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17676" e_stop="17811" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17812" i_stop="19968" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19969" e_stop="20105" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.664" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20106" i_stop="20181" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20182" e_stop="20305" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="20306" i_stop="20676" i_length="371"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20677" e_stop="21450" e_length="774"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21451" i_stop="22842" i_length="1392"/>
          </intron>
          <exon e_serial="7" e_score="0.625">
            <gDNA_exon_boundary e_start="22843" e_stop="22850" e_length="8"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22851" i_stop="23114" i_length="264"/>
          </intron>
          <exon e_serial="8" e_score="0.567">
            <gDNA_exon_boundary e_start="23115" e_stop="23144" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15359" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20105"/>
              <exon start="20182" stop="20305"/>
              <exon start="20677" stop="21404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15398" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15399" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15404" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20105"/>
              <exon start="20182" stop="20199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15414" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20105"/>
              <exon start="20182" stop="20215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15440" stop="15604"/>
              <exon start="17236" stop="17570"/>
              <exon start="17676" stop="17780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15441" stop="15604"/>
              <exon start="17236" stop="17457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15451" stop="15604"/>
              <exon start="17236" stop="17412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17481" stop="17570"/>
              <exon start="17676" stop="17811"/>
              <exon start="19969" stop="20105"/>
              <exon start="20182" stop="20305"/>
              <exon start="20677" stop="20930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20725" stop="21450"/>
              <exon start="22843" stop="22850"/>
              <exon start="23115" stop="23144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGTGGGGTTGTTGGTGGGGTTTTCATGATATTTGAGTTTGATTTTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG : AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTG : GCTGAAGTGAATTTCCTGGGTGATCTCGTTCACCCTAATTTGGTTAAACTGATTGGTTACTGCATTGAAGATGATCAGAGACTGTTAGTTTATGAATTTATGCCTCGAGGAAGCTTGGAAAATCATCTGTTCAGGA : GATCCATGCCTCTTCCTTGGTCTATCCGCATGAAGATTGCTCTGGGTGCTGCAAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACCAGTAATATATCGTGATTTCAAAACATCCAACATTCTACTAGACGCG : GATTACAATGCCAAACTTTCTGATTTTGGTCTTGCCAAAGATGGTCCTGAGGGTGATAAGACACATGTTTCTACTCGTGTCATGGGAACGTATGGTTATGCAGCCCCTGAGTATGTGATGACAG : GGCATCTAACGTCAAAGAGTGACGTCTACAGTTTTGGGGTAGTTCTACTTGAAATGATAACAGGTAGGAGATCGATGGACAAGAACCGACCAAATGGGGAACACAACCTTGTTGAATGGGCACGGCCTCATCTTGGTGAAAGAAGAAGGTTTTACAGATTGGTAGACCCTAGACTTGAAGGTCATTTTTCAATAAAAGGTGCTCAGAAAGCTGCACAGTTGGCTGCTCGTTGCCTTAGTCGTGATCCCAAAGTTAGGCCTATGATGAGTGAAGTGGTAGAAGCCTTGAAGCCATTACCAAATCTTAAAGACATGGCCAGCTCATCCTACTATTTCCAGACAATGCAAGCAGACCGAGTTGGATCAAGTCCAAGTACCAAAAATGGCGTTAGGACACAGGGATCATTCTCGAGGAATGGACAACAACATCCTAGAAGTCTTTCAATCCCAAATGGTTCTCATGCTTCTCCATACCATCAACAGTTTCCTCAGAACTCACCAAAACCAAACGGCAAAACTTAGTATTATTGGATTGACAAGTAATCTGTTTCTATCATTCTTTTCGTTTTCTCTCCAGCTATGAATATATTTTGTTGGCCACCTCCCGTTTTGTCGTTGGATGAACTGGCAAAAGGGAAGGAGTGCACAATTAACTTAAGTTGTGATCTTTGAAAATGCTGAACTCCCACTTGAAAAGAATGTATTGTAAGCGGAGCTCAAGTCCATGGAGTAAATATTGTGTCGAATGTACCTCTCCTTCAGCTGATTTTCGCAA : ATAAATAT : AAACGAGATTTCAAAATCAACGGGTTCCCT</gDNA_template>
            <first_frame> G  G  G  V  V  G  G  V  F  M  I  F  E  F  D  F  R  Y  C  K  I  W  D  *  V  V  M  V  K  R  G  S  L  G  M  *  R  N  Q  R  G  R  R  R  K  R  L  L  K  R  K  L  D  V  G  L  S  C  G  L  L  V  A  V  S  L  Q  D  L  K  L  I  A  P  *  V  A  S  V  L  T  V  :  K  V  N  L  Q  M  T  Q  A  E  T  N  L  L  H  Q  L  S  H  L  R  L  P  A  M  R  K  V  I  H  P  P  P  N  L  K  R  S  L  K  F  L  L  G  F  E  N  S  H  L  T  I  *  S  W  Q  Q  E  T  S  D  Q  S  P  F  L  V  K  G  V  S  D  V  S  S  R  G  G  S  K  R  M  A  Q  H  L  L  N  Q  G  Q  G  L  L  L  L  *  K  L  *  I  M  M  D  F  R  V  T  K  N  G  W :   L  K  *  I  S  W  V  I  S  F  T  L  I  W  L  N  *  L  V  T  A  L  K  M  I  R  D  C  *  F  M  N  L  C  L  E  E  A  W  K  I  I  C  S  G  :  D  P  C  L  F  L  G  L  S  A  *  R  L  L  W  V  L  Q  K  V  L  L  F  F  T  R  K  Q  K  D  Q  *  Y  I  V  I  S  K  H  P  T  F  Y  *  T  R :   I  T  M  P  N  F  L  I  L  V  L  P  K  M  V  L  R  V  I  R  H  M  F  L  L  V  S  W  E  R  M  V  M  Q  P  L  S  M  *  *  Q  :  G  I  *  R  Q  R  V  T  S  T  V  L  G  *  F  Y  L  K  *  *  Q  V  G  D  R  W  T  R  T  D  Q  M  G  N  T  T  L  L  N  G  H  G  L  I  L  V  K  E  E  G  F  T  D  W  *  T  L  D  L  K  V  I  F  Q  *  K  V  L  R  K  L  H  S  W  L  L  V  A  L  V  V  I  P  K  L  G  L  *  *  V  K  W  *  K  P  *  S  H  Y  Q  I  L  K  T  W  P  A  H  P  T  I  S  R  Q  C  K  Q  T  E  L  D  Q  V  Q  V  P  K  M  A  L  G  H  R  D  H  S  R  G  M  D  N  N  I  L  E  V  F  Q  S  Q  M  V  L  M  L  L  H  T  I  N  S  F  L  R  T  H  Q  N  Q  T  A  K  L  S  I  I  G  L  T  S  N  L  F  L  S  F  F  S  F  S  L  Q  L  *  I  Y  F  V  G  H  L  P  F  C  R  W  M  N  W  Q  K  G  R  S  A  Q  L  T  *  V  V  I  F  E  N  A  E  L  P  L  E  K  N  V  L  *  A  E  L  K  S  M  E  *  I  L  C  R  M  Y  L  S  F  S  *  F  S  Q  :  I  N  I :   N  E  I  S  K  S  T  G  S   </first_frame>
            <second_frame>  E  V  G  L  L  V  G  F  S  *  Y  L  S  L  I  L  G  I  A  K  Y  G  I  R  W  *  W  *  K  G  G  V  L  G  C  R  E  I  K  G  E  E  E  E  R  G  C  *  R  G  N  W  M  L  D  *  V  V  V  Y  W  *  L  Y  L  F  K  I  *  S  *  *  L  H  K  W  H  Q  Y  S  L  * :   K  *  I  Y  K  *  H  K  Q  R  P  T  C  C  T  N  Y  L  I  Y  D  Y  Q  Q  C  G  K  *  F  I  H  L  Q  T  *  R  G  A  *  S  F  F  S  A  S  K  I  R  I  *  R  F  E  V  G  N  K  K  L  Q  T  R  V  P  S  W  *  R  G  F  R  M  C  L  Q  G  V  D  R  R  E  W  H  S  T  C  *  T  R  D  R  A  Y  C  C  C  E  N  S  K  S  *  W  T  S  G  S  Q  R  M  A   : G  *  S  E  F  P  G  *  S  R  S  P  *  F  G  *  T  D  W  L  L  H  *  R  *  S  E  T  V  S  L  *  I  Y  A  S  R  K  L  G  K  S  S  V  Q  E :   I  H  A  S  S  L  V  Y  P  H  E  D  C  S  G  C  C  K  R  S  C  F  S  S  R  G  S  R  K  T  S  N  I  S  *  F  Q  N  I  Q  H  S  T  R  R   : G  L  Q  C  Q  T  F  *  F  W  S  C  Q  R  W  S  *  G  *  *  D  T  C  F  Y  S  C  H  G  N  V  W  L  C  S  P  *  V  C  D  D  R :   A  S  N  V  K  E  *  R  L  Q  F  W  G  S  S  T  *  N  D  N  R  *  E  I  D  G  Q  E  P  T  K  W  G  T  Q  P  C  *  M  G  T  A  S  S  W  *  K  K  K  V  L  Q  I  G  R  P  *  T  *  R  S  F  F  N  K  R  C  S  E  S  C  T  V  G  C  S  L  P  *  S  *  S  Q  S  *  A  Y  D  E  *  S  G  R  S  L  E  A  I  T  K  S  *  R  H  G  Q  L  I  L  L  F  P  D  N  A  S  R  P  S  W  I  K  S  K  Y  Q  K  W  R  *  D  T  G  I  I  L  E  E  W  T  T  T  S  *  K  S  F  N  P  K  W  F  S  C  F  S  I  P  S  T  V  S  S  E  L  T  K  T  K  R  Q  N  L  V  L  L  D  *  Q  V  I  C  F  Y  H  S  F  R  F  L  S  S  Y  E  Y  I  L  L  A  T  S  R  F  V  V  G  *  T  G  K  R  E  G  V  H  N  *  L  K  L  *  S  L  K  M  L  N  S  H  L  K  R  M  Y  C  K  R  S  S  S  P  W  S  K  Y  C  V  E  C  T  S  P  S  A  D  F  R  K :   *  I   : *  T  R  F  Q  N  Q  R  V  P  </second_frame>
            <third_frame>   R  W  G  C  W  W  G  F  H  D  I  *  V  *  F  *  V  L  Q  N  M  G  L  G  G  D  G  E  K  G  E  S  W  D  V  E  K  S  K  G  K  K  K  K  E  V  V  E  E  E  T  G  C  W  T  K  L  W  F  I  G  S  C  I  S  S  R  S  K  V  D  S  S  I  S  G  I  S  T  H  C   : E  S  K  S  T  N  D  T  S  R  D  Q  P  V  A  P  I  I  S  S  T  T  T  S  N  A  E  S  N  S  S  T  S  K  L  E  E  E  L  K  V  S  S  R  L  R  K  F  A  F  N  D  L  K  L  A  T  R  N  F  R  P  E  S  L  L  G  E  G  G  F  G  C  V  F  K  G  W  I  E  E  N  G  T  A  P  V  K  P  G  T  G  L  T  V  A  V  K  T  L  N  H  D  G  L  Q  G  H  K  E  W  L  :  A  E  V  N  F  L  G  D  L  V  H  P  N  L  V  K  L  I  G  Y  C  I  E  D  D  Q  R  L  L  V  Y  E  F  M  P  R  G  S  L  E  N  H  L  F  R   : R  S  M  P  L  P  W  S  I  R  M  K  I  A  L  G  A  A  K  G  L  A  F  L  H  E  E  A  E  R  P  V  I  Y  R  D  F  K  T  S  N  I  L  L  D  A  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  D  G  P  E  G  D  K  T  H  V  S  T  R  V  M  G  T  Y  G  Y  A  A  P  E  Y  V  M  T   : G  H  L  T  S  K  S  D  V  Y  S  F  G  V  V  L  L  E  M  I  T  G  R  R  S  M  D  K  N  R  P  N  G  E  H  N  L  V  E  W  A  R  P  H  L  G  E  R  R  R  F  Y  R  L  V  D  P  R  L  E  G  H  F  S  I  K  G  A  Q  K  A  A  Q  L  A  A  R  C  L  S  R  D  P  K  V  R  P  M  M  S  E  V  V  E  A  L  K  P  L  P  N  L  K  D  M  A  S  S  S  Y  Y  F  Q  T  M  Q  A  D  R  V  G  S  S  P  S  T  K  N  G  V  R  T  Q  G  S  F  S  R  N  G  Q  Q  H  P  R  S  L  S  I  P  N  G  S  H  A  S  P  Y  H  Q  Q  F  P  Q  N  S  P  K  P  N  G  K  T  *  Y  Y  W  I  D  K  *  S  V  S  I  I  L  F  V  F  S  P  A  M  N  I  F  C  W  P  P  P  V  L  S  L  D  E  L  A  K  G  K  E  C  T  I  N  L  S  C  D  L  *  K  C  *  T  P  T  *  K  E  C  I  V  S  G  A  Q  V  H  G  V  N  I  V  S  N  V  P  L  L  Q  L  I  F  A   : N  K  Y  :  K  R  D  F  K  I  N  G  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15409" stop="15604"/>
                    <exon start="17236" stop="17570"/>
                    <exon start="17676" stop="17811"/>
                    <exon start="19969" stop="20105"/>
                    <exon start="20182" stop="20305"/>
                    <exon start="20677" stop="21197"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQNMGLGGDGEKGESWDVEKSKGKKKKEVVEEETGCWTKLWFIGSCISSRSKVDSSISGISTHCESKSTNDTSRDQPVAPIISSTTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLVDPRLEGHFSIKGAQKAAQLAARCLSRDPKVRPMMSEVVEALKPLPNLKDMASSSYYFQTMQADRVGSSPSTKNGVRTQGSFSRNGQQHPRSLSIPNGSHASPYHQQFPQNSPKPNGKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15405" e_stop="15604"/>
            <exon e_start="17236" e_stop="17599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.665" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15405" e_stop="15604" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.665" acc_prob="0.938">
            <gDNA_intron_boundary i_start="15605" i_stop="17235" i_length="1631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17236" e_stop="17599" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15405" stop="15604"/>
              <exon start="17236" stop="17599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15441" stop="15604"/>
              <exon start="17236" stop="17457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15451" stop="15604"/>
              <exon start="17236" stop="17412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTATTGCAAAATATGGGATTAGGTGGTGATGGTGAAAAGGGGGAGTCTTGGGATGTAGAGAAATCAAAGGGGAAGAAGAAGAAAGAGGTTGTTGAAGAGGAAACTGGATGTTGGACTAAGTTGTGGTTTATTGGTAGCTGTATCTCTTCAAGATCTAAAGTTGATAGCTCCATAAGTGGCATCAGTACTCACTGTG : AAAGTAAATCTACAAATGACACAAGCAGAGACCAACCTGTTGCACCAATTATCTCATCTACGACTACCAGCAATGCGGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTTCTTCTCGGCTTCGAAAATTCGCATTTAACGATTTGAAGTTGGCAACAAGAAACTTCAGACCAGAGTCCCTTCTTGGTGAAGGGGGTTTCGGATGTGTCTTCAAGGGGTGGATCGAAGAGAATGGCACAGCACCTGTTAAACCAGGGACAGGGCTTACTGTTGCTGTGAAAACTCTAAATCATGATGGACTTCAGGGTCACAAAGAATGGCTGGTTTGCAGCTCTCTTCTTTTATTTATTAA</gDNA_template>
            <first_frame> L  G  I  A  K  Y  G  I  R  W  *  W  *  K  G  G  V  L  G  C  R  E  I  K  G  E  E  E  E  R  G  C  *  R  G  N  W  M  L  D  *  V  V  V  Y  W  *  L  Y  L  F  K  I  *  S  *  *  L  H  K  W  H  Q  Y  S  L  * :   K  *  I  Y  K  *  H  K  Q  R  P  T  C  C  T  N  Y  L  I  Y  D  Y  Q  Q  C  G  K  *  F  I  H  L  Q  T  *  R  G  A  *  S  F  F  S  A  S  K  I  R  I  *  R  F  E  V  G  N  K  K  L  Q  T  R  V  P  S  W  *  R  G  F  R  M  C  L  Q  G  V  D  R  R  E  W  H  S  T  C  *  T  R  D  R  A  Y  C  C  C  E  N  S  K  S  *  W  T  S  G  S  Q  R  M  A  G  L  Q  L  S  S  F  I  Y  * </first_frame>
            <second_frame>  *  V  L  Q  N  M  G  L  G  G  D  G  E  K  G  E  S  W  D  V  E  K  S  K  G  K  K  K  K  E  V  V  E  E  E  T  G  C  W  T  K  L  W  F  I  G  S  C  I  S  S  R  S  K  V  D  S  S  I  S  G  I  S  T  H  C   : E  S  K  S  T  N  D  T  S  R  D  Q  P  V  A  P  I  I  S  S  T  T  T  S  N  A  E  S  N  S  S  T  S  K  L  E  E  E  L  K  V  S  S  R  L  R  K  F  A  F  N  D  L  K  L  A  T  R  N  F  R  P  E  S  L  L  G  E  G  G  F  G  C  V  F  K  G  W  I  E  E  N  G  T  A  P  V  K  P  G  T  G  L  T  V  A  V  K  T  L  N  H  D  G  L  Q  G  H  K  E  W  L  V  C  S  S  L  L  L  F  I   </second_frame>
            <third_frame>   R  Y  C  K  I  W  D  *  V  V  M  V  K  R  G  S  L  G  M  *  R  N  Q  R  G  R  R  R  K  R  L  L  K  R  K  L  D  V  G  L  S  C  G  L  L  V  A  V  S  L  Q  D  L  K  L  I  A  P  *  V  A  S  V  L  T  V  :  K  V  N  L  Q  M  T  Q  A  E  T  N  L  L  H  Q  L  S  H  L  R  L  P  A  M  R  K  V  I  H  P  P  P  N  L  K  R  S  L  K  F  L  L  G  F  E  N  S  H  L  T  I  *  S  W  Q  Q  E  T  S  D  Q  S  P  F  L  V  K  G  V  S  D  V  S  S  R  G  G  S  K  R  M  A  Q  H  L  L  N  Q  G  Q  G  L  L  L  L  *  K  L  *  I  M  M  D  F  R  V  T  K  N  G  W  F  A  A  L  F  F  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15409" stop="15604"/>
                    <exon start="17236" stop="17597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQNMGLGGDGEKGESWDVEKSKGKKKKEVVEEETGCWTKLWFIGSCISSRSKVDSSISGISTHCESKSTNDTSRDQPVAPIISSTTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLVCSSLLLFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26504" PGL_stop="21458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26187"/>
            <exon e_start="25338" e_stop="25189"/>
            <exon e_start="25082" e_stop="24867"/>
            <exon e_start="24308" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="21973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26187" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25338" e_stop="25189" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25082" e_stop="24867" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24308" e_stop="24187" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22371" e_stop="21973" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="25044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26496" stop="26217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26490" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26477" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26476" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26475" stop="26213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26458" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26451" stop="26187"/>
              <exon start="25338" stop="25221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26402" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26401" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26391" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26250" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25241" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="23013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25068" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25066" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25054" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24902" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24198" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23901" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23805" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23021" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22908" stop="22882"/>
              <exon start="22371" stop="21977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K  I  S </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  L   </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26187"/>
                    <exon start="25338" stop="25189"/>
                    <exon start="25082" stop="24867"/>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26187"/>
            <exon e_start="25338" e_stop="25189"/>
            <exon e_start="25082" e_stop="24867"/>
            <exon e_start="24308" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="22065"/>
            <exon e_start="21495" e_stop="21458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26187" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25338" e_stop="25189" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25082" e_stop="24867" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24308" e_stop="24187" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22371" e_stop="22065" e_length="307"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="22064" i_stop="21496" i_length="569"/>
          </intron>
          <exon e_serial="8" e_score="0.553">
            <gDNA_exon_boundary e_start="21495" e_stop="21458" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="25044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26496" stop="26217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26490" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26477" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26476" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26475" stop="26213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26458" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26451" stop="26187"/>
              <exon start="25338" stop="25221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26402" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26401" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26391" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26260" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26250" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25241" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="23013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25068" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25066" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25054" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23901" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23881" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22065"/>
              <exon start="21495" stop="21458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGA : GCCTAAAAGGAACAAGATCAAAATATAGGCCGAAAATA</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *   : S  L  K  G  T  R  S  K  Y  R  P  K  I </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  :  A  *  K  E  Q  D  Q  N  I  G  R  K   </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  E :   P  K  R  N  K  I  K  I  *  A  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26187"/>
                    <exon start="25338" stop="25189"/>
                    <exon start="25082" stop="24867"/>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26496" e_stop="26187"/>
            <exon e_start="25338" e_stop="25189"/>
            <exon e_start="25087" e_stop="24867"/>
            <exon e_start="24308" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="21973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26496" e_stop="26187" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="25338" e_stop="25189" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25188" i_stop="25088" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25087" e_stop="24867" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24308" e_stop="24187" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22371" e_stop="21973" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26496" stop="26217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26475" stop="26213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26451" stop="26187"/>
              <exon start="25338" stop="25221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26399" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25087" stop="24867"/>
              <exon start="24308" stop="24231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25076" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25068" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25066" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25054" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24902" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24198" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23901" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23805" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23021" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22908" stop="22882"/>
              <exon start="22371" stop="21977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : TGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAATTAGT</gDNA_template>
            <first_frame> S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : V  Q  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K  I  S </first_frame>
            <second_frame>  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  C  R  *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  L   </second_frame>
            <third_frame>   P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   A  G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25198" stop="25189"/>
                    <exon start="25087" stop="24867"/>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIWVQVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26495" stop="26187"/>
                    <exon start="25338" stop="25189"/>
                    <exon start="25087" stop="25079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="24437" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="21977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24437" e_stop="24187" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22371" e_stop="21977" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24198" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23901" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263459" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23805" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276215" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23021" stop="22882"/>
              <exon start="22371" stop="22060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22908" stop="22882"/>
              <exon start="22371" stop="21977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268557" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</gDNA_template>
            <first_frame> R  S  R  E  R  N  F  M  F  I  L  A  N  F  Y  F  S  L  V  K  V  T  S  K  *  S  H  R  W  S  A  F  Y  L  H  G  T  S  F  F  F  L  *  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K   </first_frame>
            <second_frame>  E  V  E  K  E  I  S  C  L  S  W  L  T  S  I  F  L  *  *  R  S  L  L  N  N  L  I  D  G  Q  L  F  I  Y  T  E  L  H  F  F  S  C  R  K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  </second_frame>
            <third_frame>   K  *  R  K  K  F  H  V  Y  P  G  *  L  L  F  F  S  S  E  G  H  F  *  I  I  S  *  M  V  S  F  L  F  T  R  N  F  I  F  F  L  V  G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29956" PGL_stop="32397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29956" e_stop="30256"/>
            <exon e_start="30902" e_stop="31032"/>
            <exon e_start="31289" e_stop="31343"/>
            <exon e_start="31496" e_stop="31597"/>
            <exon e_start="31760" e_stop="31880"/>
            <exon e_start="32324" e_stop="32397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.963" e_score="0.977"/>
          <exon-intron don_prob="0.922" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.945" e_score="0.967"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="29956" e_stop="30256" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.963">
            <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30902" e_stop="31032" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31289" e_stop="31343" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31496" e_stop="31597" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31598" i_stop="31759" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="31760" e_stop="31880" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.945">
            <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="32324" e_stop="32397" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29956" stop="30256"/>
              <exon start="30902" stop="31032"/>
              <exon start="31289" stop="31343"/>
              <exon start="31496" stop="31597"/>
              <exon start="31760" stop="31880"/>
              <exon start="32324" stop="32397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29957" stop="30256"/>
              <exon start="30902" stop="31032"/>
              <exon start="31289" stop="31316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30028" stop="30256"/>
              <exon start="30902" stop="31032"/>
              <exon start="31289" stop="31343"/>
              <exon start="31496" stop="31503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30054" stop="30256"/>
              <exon start="30902" stop="30947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTTTCAGGTGAGATCTACTGATCGGAAAAAATGTCGACAGTTACTATGGAGCCTCTCGTCGGCCATTATCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG : GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG : TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG : GATTATGCAATTGAAACTCCTTTGCAAGGAGACACATTTCAAGAGGTGAAGATCGACATAAGTTCTAAGTGGTCTATAGCAGCTATAAATTTTGTGTTGAAG : GATGAGGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG : GATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAAT</gDNA_template>
            <first_frame> M  I  F  R  *  D  L  L  I  G  K  N  V  D  S  Y  Y  G  A  S  R  R  P  L  S  P  A  K  P  K  A  I  S  K  S  E  E  N  L  S  F  F  S  K  F  L  S  E  A  T  L  R  Y  R  N  F  E  I  L  R  L  S  A  *  P  D  G  T  Y  Q  S  *  L  H  R  C  C  R  H  *  D  V  G  T  V  G  R  S  F  *  G  D  F  L  V  E  T  T  G  K   : G  *  R  K  D  I  H  Q  I  G  *  G  E  G  *  R  E  L  E  P  H  C  G  M  *  F  A  R  E  M  D  P  S  L  G  G  P  L  Y  R  *  H  W  Q  :  *  M  G  S  T  S  S  R  D  A  A  V  R  F  N  C  H  K   : G  L  C  N  *  N  S  F  A  R  R  H  I  S  R  G  E  D  R  H  K  F  *  V  V  Y  S  S  Y  K  F  C  V  E   : G  *  G  N  W  S  L  V  S  A  Q  R  A  G  L  Q  D  S  S  C  *  L  P  *  Q  *  C  *  Y  R  W  C  *  K  G  V  E  H  M  V  R :   I  T  R  K  A  V  Q  H  T  P  *  S  R  S  F  S  F  *  R  G  I  K  Q  Q  </first_frame>
            <second_frame>  *  F  S  G  E  I  Y  *  S  E  K  M  S  T  V  T  M  E  P  L  V  G  H  Y  L  R  R  S  P  K  L  Y  P  N  Q  K  K  T  S  H  F  S  L  N  F  S  R  R  P  L  S  G  T  A  T  L  R  F  C  D  Y  R  R  S  R  T  V  P  I  R  A  S  S  T  D  A  A  V  I  E  T  S  E  Q  S  D  V  V  F  K  E  T  F  S  L  K  R  P  E  R  :  A  E  G  K  I  S  I  R  L  D  K  G  K  D  E  E  N  W  N  L  T  V  G  C  S  L  P  G  K  W  I  L  H  W  G  V  H  Y  T  D  D  T  G  S :   E  W  D  Q  P  P  P  E  M  R  P  S  G  S  I  A  I  K  :  D  Y  A  I  E  T  P  L  Q  G  D  T  F  Q  E  V  K  I  D  I  S  S  K  W  S  I  A  A  I  N  F  V  L  K  :  D  E  E  T  G  V  W  Y  Q  H  R  G  R  D  F  K  I  P  L  V  D  C  L  D  N  D  A  N  I  V  G  V  K  K  E  S  N  I  W  S   : G  S  L  G  K  L  S  N  I  L  L  N  P  E  A  S  P  S  K  G  E  S  S  S  N </second_frame>
            <third_frame>   D  F  Q  V  R  S  T  D  R  K  K  C  R  Q  L  L  W  S  L  S  S  A  I  I  S  G  E  A  Q  S  Y  I  Q  I  R  R  K  P  L  I  F  L  *  I  S  L  G  G  H  S  P  V  P  Q  L  *  D  S  A  I  I  G  V  A  G  R  Y  L  S  E  L  A  P  P  M  L  P  S  L  R  R  R  N  S  R  T  *  F  L  R  R  L  S  R  *  N  D  R  K  G :   L  K  E  R  Y  P  S  D  W  I  R  G  R  M  K  R  I  G  T  S  L  W  D  V  V  C  Q  G  N  G  S  F  T  G  G  S  I  I  Q  M  T  L  A   : V  N  G  I  N  L  L  Q  R  C  G  R  Q  V  Q  L  P  *  R :   I  M  Q  L  K  L  L  C  K  E  T  H  F  K  R  *  R  S  T  *  V  L  S  G  L  *  Q  L  *  I  L  C  *  R :   M  R  K  L  E  F  G  I  S  T  E  G  G  T  S  R  F  L  L  L  T  A  L  T  M  M  L  I  S  L  V  L  K  R  S  R  T  Y  G  Q  :  D  H  *  E  S  C  P  T  Y  S  L  I  Q  K  L  L  L  L  K  G  N  Q  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29981" stop="30256"/>
                    <exon start="30902" stop="31032"/>
                    <exon start="31289" stop="31343"/>
                    <exon start="31496" stop="31597"/>
                    <exon start="31760" stop="31880"/>
                    <exon start="32324" stop="32397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKMSTVTMEPLVGHYLRRSPKLYPNQKKTSHFSLNFSRRPLSGTATLRFCDYRRSRTVPIRASSTDAAVIETSEQSDVVFKETFSLKRPERAEGKISIRLDKGKDEENWNLTVGCSLPGKWILHWGVHYTDDTGSEWDQPPPEMRPSGSIAIKDYAIETPLQGDTFQEVKIDISSKWSIAAINFVLKDEETGVWYQHRGRDFKIPLVDCLDNDANIVGVKKESNIWSGSLGKLSNILLNPEASPSKGESSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35847" PGL_stop="42154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35847" e_stop="36251"/>
            <exon e_start="36892" e_stop="37081"/>
            <exon e_start="38724" e_stop="38830"/>
            <exon e_start="39780" e_stop="40029"/>
            <exon e_start="40152" e_stop="40274"/>
            <exon e_start="41244" e_stop="41411"/>
            <exon e_start="41499" e_stop="42154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.856" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="35847" e_stop="36251" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36892" e_stop="37081" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38724" e_stop="38830" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38831" i_stop="39779" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39780" e_stop="40029" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40030" i_stop="40151" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40152" e_stop="40274" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40275" i_stop="41243" i_length="969"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41244" e_stop="41411" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.828" acc_prob="0.856">
            <gDNA_intron_boundary i_start="41412" i_stop="41498" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="41499" e_stop="42154" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35847" stop="36251"/>
              <exon start="36892" stop="37081"/>
              <exon start="38724" stop="38830"/>
              <exon start="39780" stop="39873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35912" stop="36251"/>
              <exon start="36892" stop="37052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35912" stop="36249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38769" stop="38830"/>
              <exon start="39780" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38774" stop="38830"/>
              <exon start="39780" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39848" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39853" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39854" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39863" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="40029"/>
              <exon start="40152" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40156" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="42065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40181" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="41996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40256" stop="40274"/>
              <exon start="41244" stop="41411"/>
              <exon start="41499" stop="42030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41325" stop="41411"/>
              <exon start="41499" stop="42088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41391" stop="41411"/>
              <exon start="41499" stop="42154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41759" stop="42103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41800" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248392" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG : ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG : GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTGAG : GGAGGAGATTGGTTATGATGGATGGAGGCTTGATTTTGTTCGTGGGTTTTGGGGTGGTTATGTGAAGGATTACTTGGAAGCAACTGAACCTTACTTCGCTGTAGGCGAGTTTTGGGATTCCCTCGTTTATACTTATGGAGAGATGGATCACAATCAAGATGCGCATAGGCAGAGAATTATTGACTGGATTAATGCTACTAATGGAACTGCAGGAGCATTTGACGTGACAACGAAGGGAATTCTTCATTCT : GCAATTGAGAGATGTGAATACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAG : GGTCATTGGAGATTTCCTGGTGGGAAAGAGATGCAAGGTTATGCCTATATCCTGACTCACCCTGGAACCCCGTCAGTCTTCTTTGATCACATTTTCTCTGGTTACCGATCTGAAATAGGAAATCTTATATCACTCAGAAAGCGGAACAAGATTAACTGTCGGAGTTTG : GTGGATATCACAAAAGCCGAAAGGGATGTTTACGCAGCAGTTATTGACGATAAGCTGGCTGTCAAAATAGGACCAGGCCACTACGAGCCTCCAAGTGGGCATCAGAGATGGAAAACGGCTGCTGAGGGTAACAATTATAAGGTTTGGGAATTGTCATGAAAACAATCGCCTTCTTTCCCTGTTACCGATATTCTGCTATTTGTAAATGCTTGGGGTTAGCATTGAGTGACTGGAGATGGAAACAGTGAATGTCGTAAAAAAGCTGTACTGCAGCGGATTGTATCTAGCTTTGCTGCAACACAAATTGAAGTTGTTGGAGCTAAAATAGCAAGAGTATGAACAGTCTGGTAATAATTGCTGTTAATATTGTTGTATTTGGAAAAATTCACCATGTACACTATACATAGTCTGGTAAAAACTGTATATGATAGGTACCAACCACTACATTATATTGCCTTTTCAGAAGATAAATAGGCATTGTAGAAACTGTATGATGTAAAGAACTTCTGTACAACTTATTCGCCATATTGGCGATAAGACGCCTTTTTAGCGTATAAATACTAAAATGTATGTATTGCTGTATTGTATTTGTATTATTACAATTGAGTTGCTGGGTTCAGCTACTGAATAAAAGTCTCCAGCCTTATTTGGACAGA</gDNA_template>
            <first_frame> K  R  D  K  E  F  G  E  *  H  F  F  *  K  E  P  K  D  K  K  *  G  N  T  G  N  H  S  S  R  N  *  E  A  G  C  *  S  L  W  Y  I  Q  K  F  N  P  N  N  T  R  N  C  C  F  *  L  *  G  C  T  T  *  R  E  S  N  F  R  N  W  Y  R  I  *  N  F  V  P  G  F  *  L  G  I  S  *  I  R  K  M  V  Q  G  A  A  *  *  S  C  R  V  I  F  T  W  F  Q  C  D  L  V  T  S  T  N  *  L  S  V  T  R  G  I  H  A  *  G  F  I  *  L  K  F  Q  :  I  W  *  F  *  *  I  E  S  Y  S  K  E  I  P  *  S  G  H  Q  G  S  W  *  C  C  L  K  S  *  M  C  K  *  T  E  S  K  W  Y  M  E  Y  L  W  W  S  V  K  L  G  *  A  C  S  C  C  R  *  S  T  F  P   : G  K  G  Q  Q  K  *  W  R  *  F  P  C  C  S  *  H  *  S  F  P  G  I  R  E  K  G  Y  Q  G  M  V  T  L  A  E  :  G  G  D  W  L  *  W  M  E  A  *  F  C  S  W  V  L  G  W  L  C  E  G  L  L  G  S  N  *  T  L  L  R  C  R  R  V  L  G  F  P  R  L  Y  L  W  R  D  G  S  Q  S  R  C  A  *  A  E  N  Y  *  L  D  *  C  Y  *  W  N  C  R  S  I  *  R  D  N  E  G  N  S  S  F   : C  N  *  E  M  *  I  L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T   : G  S  L  E  I  S  W  W  E  R  D  A  R  L  C  L  Y  P  D  S  P  W  N  P  V  S  L  L  *  S  H  F  L  W  L  P  I  *  N  R  K  S  Y  I  T  Q  K  A  E  Q  D  *  L  S  E  F   : G  G  Y  H  K  S  R  K  G  C  L  R  S  S  Y  *  R  *  A  G  C  Q  N  R  T  R  P  L  R  A  S  K  W  A  S  E  M  E  N  G  C  *  G  *  Q  L  *  G  L  G  I  V  M  K  T  I  A  F  F  P  C  Y  R  Y  S  A  I  C  K  C  L  G  L  A  L  S  D  W  R  W  K  Q  *  M  S  *  K  S  C  T  A  A  D  C  I  *  L  C  C  N  T  N  *  S  C  W  S  *  N  S  K  S  M  N  S  L  V  I  I  A  V  N  I  V  V  F  G  K  I  H  H  V  H  Y  T  *  S  G  K  N  C  I  *  *  V  P  T  T  T  L  Y  C  L  F  R  R  *  I  G  I  V  E  T  V  *  C  K  E  L  L  Y  N  L  F  A  I  L  A  I  R  R  L  F  S  V  *  I  L  K  C  M  Y  C  C  I  V  F  V  L  L  Q  L  S  C  W  V  Q  L  L  N  K  S  L  Q  P  Y  L  D  R </first_frame>
            <second_frame>  K  E  I  R  S  L  V  S  D  I  S  S  E  K  S  R  K  T  K  N  R  E  T  Q  E  T  I  L  Q  E  I  E  K  L  A  A  E  A  Y  G  I  F  R  S  S  I  P  T  I  L  E  T  V  V  S  D  S  E  V  V  Q  P  D  V  K  V  T  S  G  T  G  T  G  F  E  I  L  C  Q  G  F  N  W  E  S  H  K  S  G  R  W  Y  K  E  L  H  D  K  A  A  E  L  S  S  L  G  F  S  V  I  W  L  P  P  P  T  D  S  V  S  P  E  G  Y  M  P  R  D  L  Y  N  L  N  S  R :   Y  G  S  F  D  E  L  K  V  T  V  K  K  F  H  E  V  G  I  K  V  L  G  D  V  V  L  N  H  R  C  A  S  E  R  N  Q  N  G  I  W  N  I  F  G  G  R  L  N  W  D  E  R  A  V  V  A  D  D  P  H  F  Q  :  G  R  G  N  K  S  S  G  D  N  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  K  D  I  R  E  W  L  L  W  L  R :   E  E  I  G  Y  D  G  W  R  L  D  F  V  R  G  F  W  G  G  Y  V  K  D  Y  L  E  A  T  E  P  Y  F  A  V  G  E  F  W  D  S  L  V  Y  T  Y  G  E  M  D  H  N  Q  D  A  H  R  Q  R  I  I  D  W  I  N  A  T  N  G  T  A  G  A  F  D  V  T  T  K  G  I  L  H  S  :  A  I  E  R  C  E  Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  :  G  H  W  R  F  P  G  G  K  E  M  Q  G  Y  A  Y  I  L  T  H  P  G  T  P  S  V  F  F  D  H  I  F  S  G  Y  R  S  E  I  G  N  L  I  S  L  R  K  R  N  K  I  N  C  R  S  L  :  V  D  I  T  K  A  E  R  D  V  Y  A  A  V  I  D  D  K  L  A  V  K  I  G  P  G  H  Y  E  P  P  S  G  H  Q  R  W  K  T  A  A  E  G  N  N  Y  K  V  W  E  L  S  *  K  Q  S  P  S  F  P  V  T  D  I  L  L  F  V  N  A  W  G  *  H  *  V  T  G  D  G  N  S  E  C  R  K  K  A  V  L  Q  R  I  V  S  S  F  A  A  T  Q  I  E  V  V  G  A  K  I  A  R  V  *  T  V  W  *  *  L  L  L  I  L  L  Y  L  E  K  F  T  M  Y  T  I  H  S  L  V  K  T  V  Y  D  R  Y  Q  P  L  H  Y  I  A  F  S  E  D  K  *  A  L  *  K  L  Y  D  V  K  N  F  C  T  T  Y  S  P  Y  W  R  *  D  A  F  L  A  Y  K  Y  *  N  V  C  I  A  V  L  Y  L  Y  Y  Y  N  *  V  A  G  F  S  Y  *  I  K  V  S  S  L  I  W  T   </second_frame>
            <third_frame>   K  R  *  G  V  W  *  V  T  F  L  L  K  R  A  E  R  Q  K  I  G  K  H  R  K  P  F  F  K  K  L  R  S  W  L  L  K  L  M  V  Y  S  E  V  Q  S  Q  Q  Y  *  K  L  L  F  L  T  L  R  L  Y  N  L  T  *  K  *  L  Q  E  L  V  Q  D  L  K  F  C  A  R  V  L  I  G  N  L  I  N  P  E  D  G  T  R  S  C  M  I  K  L  Q  S  Y  L  H  L  V  S  V  *  S  G  Y  L  H  Q  L  T  Q  C  H  Q  R  D  T  C  L  G  I  Y  I  T  *  I  P   : D  M  V  V  L  M  N  *  K  L  Q  *  R  N  S  M  K  W  A  S  R  F  L  V  M  L  S  *  I  I  D  V  Q  V  N  G  I  K  M  V  Y  G  I  S  L  V  V  G  *  I  G  M  S  V  Q  L  L  Q  M  I  H  I  S  R :   E  G  A  T  K  V  V  E  I  I  S  M  L  L  L  T  L  I  I  P  R  N  S  *  E  R  I  S  G  N  G  Y  S  G  *   : G  R  R  L  V  M  M  D  G  G  L  I  L  F  V  G  F  G  V  V  M  *  R  I  T  W  K  Q  L  N  L  T  S  L  *  A  S  F  G  I  P  S  F  I  L  M  E  R  W  I  T  I  K  M  R  I  G  R  E  L  L  T  G  L  M  L  L  M  E  L  Q  E  H  L  T  *  Q  R  R  E  F  F  I  L :   Q  L  R  D  V  N  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R :   V  I  G  D  F  L  V  G  K  R  C  K  V  M  P  I  S  *  L  T  L  E  P  R  Q  S  S  L  I  T  F  S  L  V  T  D  L  K  *  E  I  L  Y  H  S  E  S  G  T  R  L  T  V  G  V  W :   W  I  S  Q  K  P  K  G  M  F  T  Q  Q  L  L  T  I  S  W  L  S  K  *  D  Q  A  T  T  S  L  Q  V  G  I  R  D  G  K  R  L  L  R  V  T  I  I  R  F  G  N  C  H  E  N  N  R  L  L  S  L  L  P  I  F  C  Y  L  *  M  L  G  V  S  I  E  *  L  E  M  E  T  V  N  V  V  K  K  L  Y  C  S  G  L  Y  L  A  L  L  Q  H  K  L  K  L  L  E  L  K  *  Q  E  Y  E  Q  S  G  N  N  C  C  *  Y  C  C  I  W  K  N  S  P  C  T  L  Y  I  V  W  *  K  L  Y  M  I  G  T  N  H  Y  I  I  L  P  F  Q  K  I  N  R  H  C  R  N  C  M  M  *  R  T  S  V  Q  L  I  R  H  I  G  D  K  T  P  F  *  R  I  N  T  K  M  Y  V  L  L  Y  C  I  C  I  I  T  I  E  L  L  G  S  A  T  E  *  K  S  P  A  L  F  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35848" stop="36251"/>
                    <exon start="36892" stop="37081"/>
                    <exon start="38724" stop="38830"/>
                    <exon start="39780" stop="40029"/>
                    <exon start="40152" stop="40274"/>
                    <exon start="41244" stop="41411"/>
                    <exon start="41499" stop="41657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEIRSLVSDISSEKSRKTKNRETQETILQEIEKLAAEAYGIFRSSIPTILETVVSDSEVVQPDVKVTSGTGTGFEILCQGFNWESHKSGRWYKELHDKAAELSSLGFSVIWLPPPTDSVSPEGYMPRDLYNLNSRYGSFDELKVTVKKFHEVGIKVLGDVVLNHRCASERNQNGIWNIFGGRLNWDERAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIREWLLWLREEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEFWDSLVYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSAIERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYILTHPGTPSVFFDHIFSGYRSEIGNLISLRKRNKINCRSLVDITKAERDVYAAVIDDKLAVKIGPGHYEPPSGHQRWKTAAEGNNYKVWELS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40170" e_stop="40826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40170" e_stop="40826" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGGCGACTATCCGATCAGAAGGGGAAACCTCCCGGCGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTATAGAGAATCATGATACAGGTTCTACACAGGTAAAATATGCTCTTTAGTTATCAGAGGACTAGAGAAGCTCCTCTTTTAATCTTGATCAATGATAAAAGGTTTTTTTTATGAGGAGGCAGATAGTTCAGCATATCCACTGGCCGGAACCAACTATACCTTTCTTGATCATTCAATTAATTTACCACCTTTTTCCTGCTTAAGTGTGGTTGGATTGCTCAAGCGTGAGAGCTAAATGTACTTTGAATCCTGGCAGCTGCCTATAAATGCTATTTACAGTTAGATATCATGATGAAATGTAAACCCTGTAGCTTCTCTATTGACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAATCCTAGTCCAGCCTAGTCATCAACTTTGATTTTGTTTGGTTTCTTTGCTCTTGATGTTCCATAATTTGCTTGTCAATATCTAAATTGGCAAAAGTTCTAGCAAACACAAGGCTGTAAAATTCTTCAGCGTATTTATTTTTTTGGTACAGAACGTCTCTCTTAGGTTCCATTTGGACTCAACTTAAAATCAATG</gDNA_template>
            <first_frame> Y  W  R  L  S  D  Q  K  G  K  P  P  G  V  V  G  W  W  P  S  R  A  V  T  F  I  E  N  H  D  T  G  S  T  Q  V  K  Y  A  L  *  L  S  E  D  *  R  S  S  S  F  N  L  D  Q  *  *  K  V  F  F  M  R  R  Q  I  V  Q  H  I  H  W  P  E  P  T  I  P  F  L  I  I  Q  L  I  Y  H  L  F  P  A  *  V  W  L  D  C  S  S  V  R  A  K  C  T  L  N  P  G  S  C  L  *  M  L  F  T  V  R  Y  H  D  E  M  *  T  L  *  L  L  Y  *  L  *  C  I  A  V  T  T  I  R  K  N  S  S  P  W  K  S  V  K  K  Q  N  P  S  P  A  *  S  S  T  L  I  L  F  G  F  F  A  L  D  V  P  *  F  A  C  Q  Y  L  N  W  Q  K  F  *  Q  T  Q  G  C  K  I  L  Q  R  I  Y  F  F  G  T  E  R  L  S  *  V  P  F  G  L  N  L  K  S  M </first_frame>
            <second_frame>  T  G  D  Y  P  I  R  R  G  N  L  P  A  L  L  D  G  G  H  L  V  L  L  H  L  *  R  I  M  I  Q  V  L  H  R  *  N  M  L  F  S  Y  Q  R  T  R  E  A  P  L  L  I  L  I  N  D  K  R  F  F  L  *  G  G  R  *  F  S  I  S  T  G  R  N  Q  L  Y  L  S  *  S  F  N  *  F  T  T  F  F  L  L  K  C  G  W  I  A  Q  A  *  E  L  N  V  L  *  I  L  A  A  A  Y  K  C  Y  L  Q  L  D  I  M  M  K  C  K  P  C  S  F  S  I  D  S  S  A  *  L  *  P  P  L  G  R  I  V  P  L  G  N  Q  L  R  N  K  I  L  V  Q  P  S  H  Q  L  *  F  C  L  V  S  L  L  L  M  F  H  N  L  L  V  N  I  *  I  G  K  S  S  S  K  H  K  A  V  K  F  F  S  V  F  I  F  L  V  Q  N  V  S  L  R  F  H  L  D  S  T  *  N  Q   </second_frame>
            <third_frame>   L  A  T  I  R  S  E  G  E  T  S  R  R  C  W  M  V  A  I  S  C  C  Y  I  Y  R  E  S  *  Y  R  F  Y  T  G  K  I  C  S  L  V  I  R  G  L  E  K  L  L  F  *  S  *  S  M  I  K  G  F  F  Y  E  E  A  D  S  S  A  Y  P  L  A  G  T  N  Y  T  F  L  D  H  S  I  N  L  P  P  F  S  C  L  S  V  V  G  L  L  K  R  E  S  *  M  Y  F  E  S  W  Q  L  P  I  N  A  I  Y  S  *  I  S  *  *  N  V  N  P  V  A  S  L  L  T  L  V  H  S  C  D  H  H  *  E  E  *  F  P  L  E  I  S  *  E  T  K  S  *  S  S  L  V  I  N  F  D  F  V  W  F  L  C  S  *  C  S  I  I  C  L  S  I  S  K  L  A  K  V  L  A  N  T  R  L  *  N  S  S  A  Y  L  F  F  W  Y  R  T  S  L  L  G  S  I  W  T  Q  L  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0058L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41924" PGL_stop="41594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41924" e_stop="41594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="41924" e_stop="41594" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41924" stop="41594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACAGTTTTTACCAGACTATGTATAGTGTACATGGTGAATTTTTCCAAATACAACAATATTAACAGCAATTATTACCAGACTGTTCATACTCTTGCTATTTTAGCTCCAACAACTTCAATTTGTGTTGCAGCAAAGCTAGATACAATCCGCTGCAGTACAGCTTTTTTACGACATTCACTGTTTCCATCTCCAGTCACTCAATGCTAACCCCAAGCATTTACAAATAGCAGAATATCGGTAACAGGGAAAGAAGGCGATTGTTTTCATGACAATTCCCAAACCTTATAATTGTTACCCTCAGCAGCCGTTTTCCATCTCTGATGCCCA</gDNA_template>
            <first_frame> I  Y  S  F  Y  Q  T  M  Y  S  V  H  G  E  F  F  Q  I  Q  Q  Y  *  Q  Q  L  L  P  D  C  S  Y  S  C  Y  F  S  S  N  N  F  N  L  C  C  S  K  A  R  Y  N  P  L  Q  Y  S  F  F  T  T  F  T  V  S  I  S  S  H  S  M  L  T  P  S  I  Y  K  *  Q  N  I  G  N  R  E  R  R  R  L  F  S  *  Q  F  P  N  L  I  I  V  T  L  S  S  R  F  P  S  L  M  P  </first_frame>
            <second_frame>  Y  T  V  F  T  R  L  C  I  V  Y  M  V  N  F  S  K  Y  N  N  I  N  S  N  Y  Y  Q  T  V  H  T  L  A  I  L  A  P  T  T  S  I  C  V  A  A  K  L  D  T  I  R  C  S  T  A  F  L  R  H  S  L  F  P  S  P  V  T  Q  C  *  P  Q  A  F  T  N  S  R  I  S  V  T  G  K  E  G  D  C  F  H  D  N  S  Q  T  L  *  L  L  P  S  A  A  V  F  H  L  *  C  P </second_frame>
            <third_frame>   I  Q  F  L  P  D  Y  V  *  C  T  W  *  I  F  P  N  T  T  I  L  T  A  I  I  T  R  L  F  I  L  L  L  F  *  L  Q  Q  L  Q  F  V  L  Q  Q  S  *  I  Q  S  A  A  V  Q  L  F  Y  D  I  H  C  F  H  L  Q  S  L  N  A  N  P  K  H  L  Q  I  A  E  Y  R  *  Q  G  K  K  A  I  V  F  M  T  I  P  K  P  Y  N  C  Y  P  Q  Q  P  F  S  I  S  D  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41923" stop="41714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTVFTRLCIVYMVNFSKYNNINSNYYQTVHTLAILAPTTSICVAAKLDTIRCSTAFLRHSLFPSPVTQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42806" PGL_stop="43978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42806" e_stop="43136"/>
            <exon e_start="43730" e_stop="43978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.915"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="42806" e_stop="43136" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="43137" i_stop="43729" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="43730" e_stop="43978" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42806" stop="43136"/>
              <exon start="43730" stop="43808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42806" stop="43136"/>
              <exon start="43730" stop="43807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42810" stop="43136"/>
              <exon start="43730" stop="43788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42825" stop="43136"/>
              <exon start="43730" stop="43978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42825" stop="43136"/>
              <exon start="43730" stop="43943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACAAAAAAAAGGAGAAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGA : AACACTTCTCAATGGCACAAGGAGGCATTTGAAGGAAAAAGATAAAGAGGACAAGAATGACAAGGATGATAAGGAAGGTGATGAAAAAAGTGTTGATGGTTGCAAGGCATACAATCCAATTGACAAATGTTGGAGATGTGACAAAAACTGGGCTAATAACAGGAAGGCACTAGCAGACTGTGCTAGGGGATTTGGTCATGGTACAACTGGTGGTAAAGATGGTAGATTCTATGTTGTCACCGATCCATC</gDNA_template>
            <first_frame> L  I  K  S  K  T  T  K  S  W  V  F  P  P  K  A  A  G  G  S  R  K  K  K  D  K  Q  K  Q  K  K  G  E  K  K  N  I  C  Y  K  K  K  W  P  L  L  V  L  I  I  Q  L  F  F  C  F  P  F  S  V  F  L  L  *  S  Q  N  Y  M  L  I  L  L  I  L  I  L  I  W  K  K  E  L  K  K  P  S  N  L  L  L  L  L  I  M  K  I  L  R  V  S  L  K  F  S  T  K  K  L  E   : K  H  F  S  M  A  Q  G  G  I  *  R  K  K  I  K  R  T  R  M  T  R  M  I  R  K  V  M  K  K  V  L  M  V  A  R  H  T  I  Q  L  T  N  V  G  D  V  T  K  T  G  L  I  T  G  R  H  *  Q  T  V  L  G  D  L  V  M  V  Q  L  V  V  K  M  V  D  S  M  L  S  P  I  H  </first_frame>
            <second_frame>  *  *  N  Q  K  L  P  N  L  G  F  F  P  P  R  L  Q  V  V  A  E  K  K  K  T  N  K  N  K  K  K  E  K  K  K  I  S  A  T  K  K  N  G  L  Y  *  F  *  *  F  S  Y  F  S  V  F  P  F  L  F  F  F  Y  N  P  K  I  I  C  *  Y  C  *  F  *  S  L  F  G  K  K  S  *  R  S  P  P  I  F  S  C  C  L  *  *  K  S  *  G  C  H  S  N  F  Q  Q  R  S  W  R  :  N  T  S  Q  W  H  K  E  A  F  E  G  K  R  *  R  G  Q  E  *  Q  G  *  *  G  R  *  *  K  K  C  *  W  L  Q  G  I  Q  S  N  *  Q  M  L  E  M  *  Q  K  L  G  *  *  Q  E  G  T  S  R  L  C  *  G  I  W  S  W  Y  N  W  W  *  R  W  *  I  L  C  C  H  R  S  I </second_frame>
            <third_frame>   N  K  I  K  N  Y  Q  I  L  G  F  S  P  Q  G  C  R  W  *  Q  K  K  K  R  Q  T  K  T  K  K  R  R  K  K  K  Y  L  L  Q  K  K  M  A  S  I  S  F  N  N  S  V  I  F  L  F  S  L  F  C  F  S  S  I  I  P  K  L  Y  A  N  I  A  D  F  D  P  Y  L  E  K  R  A  E  E  A  L  Q  S  S  L  A  A  Y  N  E  N  P  E  G  V  T  Q  I  F  N  K  E  V  G  E :   T  L  L  N  G  T  R  R  H  L  K  E  K  D  K  E  D  K  N  D  K  D  D  K  E  G  D  E  K  S  V  D  G  C  K  A  Y  N  P  I  D  K  C  W  R  C  D  K  N  W  A  N  N  R  K  A  L  A  D  C  A  R  G  F  G  H  G  T  T  G  G  K  D  G  R  F  Y  V  V  T  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42865" stop="43136"/>
                    <exon start="43730" stop="43976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRQTKTKKRRKKKYLLQKKMASISFNNSVIFLFSLFCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPEGVTQIFNKEVGETLLNGTRRHLKEKDKEDKNDKDDKEGDEKSVDGCKAYNPIDKCWRCDKNWANNRKALADCARGFGHGTTGGKDGRFYVVTDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42806" e_stop="43318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="42806" e_stop="43318" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42806" stop="43318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAAAATCAAAAACTACCAAATCTTGGGTTTTTCCCCCCAAGGCTGCAGGTGGTAGCAGAAAAAAAAAAGACAAACAAAAACAAAAAAAAGGAGAAAAAAAAAATATCTGCTACAAAAAAAAATGGCCTCTATTAGTTTTAATAATTCAGTTATTTTTCTGTTTTCCCTTTTCTGTTTTTCTTCTATAATCCCAAAATTATATGCTAATATTGCTGATTTTGATCCTTATTTGGAAAAAAGAGCTGAAGAAGCCCTCCAATCTTCTCTTGCTGCTTATAATGAAAATCCTGAGGGTGTCACTCAAATTTTCAACAAAGAAGTTGGAGAGTAAGTGTTTTTAAGATATCGAAATCATGTATGTATGTATCTTTTTCGAGACACGAGGTTAGAATATTGTATAGAAATGAATCTTTTTGTCTTGTCAATCTTGAAAAACTAGCTGATAAGGAGAGGATTGTCGATATCACAATGCATAAAGTATATATTCCGATTATGTAGGGACATTTTGA</gDNA_template>
            <first_frame> L  I  K  S  K  T  T  K  S  W  V  F  P  P  K  A  A  G  G  S  R  K  K  K  D  K  Q  K  Q  K  K  G  E  K  K  N  I  C  Y  K  K  K  W  P  L  L  V  L  I  I  Q  L  F  F  C  F  P  F  S  V  F  L  L  *  S  Q  N  Y  M  L  I  L  L  I  L  I  L  I  W  K  K  E  L  K  K  P  S  N  L  L  L  L  L  I  M  K  I  L  R  V  S  L  K  F  S  T  K  K  L  E  S  K  C  F  *  D  I  E  I  M  Y  V  C  I  F  F  E  T  R  G  *  N  I  V  *  K  *  I  F  L  S  C  Q  S  *  K  T  S  *  *  G  E  D  C  R  Y  H  N  A  *  S  I  Y  S  D  Y  V  G  T  F  * </first_frame>
            <second_frame>  *  *  N  Q  K  L  P  N  L  G  F  F  P  P  R  L  Q  V  V  A  E  K  K  K  T  N  K  N  K  K  K  E  K  K  K  I  S  A  T  K  K  N  G  L  Y  *  F  *  *  F  S  Y  F  S  V  F  P  F  L  F  F  F  Y  N  P  K  I  I  C  *  Y  C  *  F  *  S  L  F  G  K  K  S  *  R  S  P  P  I  F  S  C  C  L  *  *  K  S  *  G  C  H  S  N  F  Q  Q  R  S  W  R  V  S  V  F  K  I  S  K  S  C  M  Y  V  S  F  S  R  H  E  V  R  I  L  Y  R  N  E  S  F  C  L  V  N  L  E  K  L  A  D  K  E  R  I  V  D  I  T  M  H  K  V  Y  I  P  I  M  *  G  H  F   </second_frame>
            <third_frame>   N  K  I  K  N  Y  Q  I  L  G  F  S  P  Q  G  C  R  W  *  Q  K  K  K  R  Q  T  K  T  K  K  R  R  K  K  K  Y  L  L  Q  K  K  M  A  S  I  S  F  N  N  S  V  I  F  L  F  S  L  F  C  F  S  S  I  I  P  K  L  Y  A  N  I  A  D  F  D  P  Y  L  E  K  R  A  E  E  A  L  Q  S  S  L  A  A  Y  N  E  N  P  E  G  V  T  Q  I  F  N  K  E  V  G  E  *  V  F  L  R  Y  R  N  H  V  C  M  Y  L  F  R  D  T  R  L  E  Y  C  I  E  M  N  L  F  V  L  S  I  L  K  N  *  L  I  R  R  G  L  S  I  S  Q  C  I  K  Y  I  F  R  L  C  R  D  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42865" stop="43140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKKRQTKTKKRRKKKYLLQKKMASISFNNSVIFLFSLFCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPEGVTQIFNKEVGE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43101" stop="43307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCHSNFQQRSWRVSVFKISKSCMYVSFSRHEVRILYRNESFCLVNLEKLADKERIVDITMHKVYIPIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44040" PGL_stop="45777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44040" e_stop="44426"/>
            <exon e_start="44528" e_stop="44770"/>
            <exon e_start="45215" e_stop="45777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.542" e_score="0.988"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44040" e_stop="44426" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="44427" i_stop="44527" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="44528" e_stop="44770" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="44771" i_stop="45214" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="45215" e_stop="45777" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44040" stop="44426"/>
              <exon start="44528" stop="44591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44235" stop="44426"/>
              <exon start="44528" stop="44770"/>
              <exon start="45215" stop="45497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44294" stop="44426"/>
              <exon start="44528" stop="44770"/>
              <exon start="45215" stop="45544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44295" stop="44426"/>
              <exon start="44528" stop="44763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44568" stop="44770"/>
              <exon start="45215" stop="45777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45567" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTGTGGATCATCTTCGAGAAGTCGATGATCATCAGGTTGAAACAAGAACTTATGATCAACAGTAATAAGACAATTGATGGCAGAGGTGTGTCTGTTCATGTTGCATATGGAGGTGGACTTACCTTACAATTTGTGCACAATGTGATTGTCCACAACATTAGAGTTCATCACATCCTTTCTAAGAATGGTGGTATGATTAGAGATTCTGTTAAACATATTGGTCTTAGGACAGTGAGTGATGGTGATGCTATTTCCCTTTTCGGTGCTAACCGTATCTGGATAGATCATTGTACTTTAACCAAGGGTGCTGATGGACTCCTCGATGCAATCATGGCTTCCACTGCTATCACCATTTCTAACTGCAAATTCAACCATCACAACGAC : GTTATGCTTTTGGGAGCAAACGATGCCTTCCCACAAGATAAAATCATGCAAGTTACAGTTGCATTCAATAGGTTCGGAAAGGGATGTATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCACGTTGTCAACAACGACTACGCCAAATGGGAAATGTATGCTATTGGTGGCACAGCTAACCCCACCATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAG : GTGACAAACCGGAATGGTGCCCCAGAAGCTTTGTGGAGAAACTGGCAATGGAGATCCGAGGGTGATTTGTTCAAGAACGGAGCCTTCTTTAGGGAGTCTGGACCAGAAATCAAGAGCACTCCATTCACAGAACATACCACAATCCAATTTGAGCCTGCTAAATTTGTAGGTAGACTCACTCGCAAGGCTGGTGTAATCCAGTGCAAGATTGGAAAAGCATGCTAGGCATGTTATATGTACAATGTAATATTAATTATAATACATAAAACATATTGTACATTTCATTTTGGGGTTTACATGGAGCCGAATATTTTTTTTTTGGGGGGGTTCTTTTACAGCAAGAGAAGAAGAAAACGGCTAAGACATCTATCTGTTTTCTCAGTTTTTTTCCGACTATTGCTTTCTTTCTTCTTCCTAGCTGGTTTACTCTATAGGTGAAGCAGTGAAGATGGGGAAGAAAACGAAAAAAGTGGGTTCTCTGGAGCTCAAGTTTATCTTTTTGTAACAGAAGTTTTGGTTTTTACGATTTTCTAATAAATGTAATTTTCCCTGTTTGAATTTCA</gDNA_template>
            <first_frame> P  L  W  I  I  F  E  K  S  M  I  I  R  L  K  Q  E  L  M  I  N  S  N  K  T  I  D  G  R  G  V  S  V  H  V  A  Y  G  G  G  L  T  L  Q  F  V  H  N  V  I  V  H  N  I  R  V  H  H  I  L  S  K  N  G  G  M  I  R  D  S  V  K  H  I  G  L  R  T  V  S  D  G  D  A  I  S  L  F  G  A  N  R  I  W  I  D  H  C  T  L  T  K  G  A  D  G  L  L  D  A  I  M  A  S  T  A  I  T  I  S  N  C  K  F  N  H  H  N  D  :  V  M  L  L  G  A  N  D  A  F  P  Q  D  K  I  M  Q  V  T  V  A  F  N  R  F  G  K  G  C  I  Q  R  M  P  R  C  R  W  G  F  F  H  V  V  N  N  D  Y  A  K  W  E  M  Y  A  I  G  G  T  A  N  P  T  I  I  S  Q  G  N  R  F  K  A  A  D  N  P  N  T  K  E  :  V  T  N  R  N  G  A  P  E  A  L  W  R  N  W  Q  W  R  S  E  G  D  L  F  K  N  G  A  F  F  R  E  S  G  P  E  I  K  S  T  P  F  T  E  H  T  T  I  Q  F  E  P  A  K  F  V  G  R  L  T  R  K  A  G  V  I  Q  C  K  I  G  K  A  C  *  A  C  Y  M  Y  N  V  I  L  I  I  I  H  K  T  Y  C  T  F  H  F  G  V  Y  M  E  P  N  I  F  F  L  G  G  F  F  Y  S  K  R  R  R  K  R  L  R  H  L  S  V  F  S  V  F  F  R  L  L  L  S  F  F  F  L  A  G  L  L  Y  R  *  S  S  E  D  G  E  E  N  E  K  S  G  F  S  G  A  Q  V  Y  L  F  V  T  E  V  L  V  F  T  I  F  *  *  M  *  F  S  L  F  E  F   </first_frame>
            <second_frame>  H  C  G  S  S  S  R  S  R  *  S  S  G  *  N  K  N  L  *  S  T  V  I  R  Q  L  M  A  E  V  C  L  F  M  L  H  M  E  V  D  L  P  Y  N  L  C  T  M  *  L  S  T  T  L  E  F  I  T  S  F  L  R  M  V  V  *  L  E  I  L  L  N  I  L  V  L  G  Q  *  V  M  V  M  L  F  P  F  S  V  L  T  V  S  G  *  I  I  V  L  *  P  R  V  L  M  D  S  S  M  Q  S  W  L  P  L  L  S  P  F  L  T  A  N  S  T  I  T  T  T :   L  C  F  W  E  Q  T  M  P  S  H  K  I  K  S  C  K  L  Q  L  H  S  I  G  S  E  R  D  V  F  K  G  C  Q  G  A  G  G  D  S  S  T  L  S  T  T  T  T  P  N  G  K  C  M  L  L  V  A  Q  L  T  P  P  S  L  A  R  V  T  V  S  R  L  P  T  I  P  T  L  K  R :   *  Q  T  G  M  V  P  Q  K  L  C  G  E  T  G  N  G  D  P  R  V  I  C  S  R  T  E  P  S  L  G  S  L  D  Q  K  S  R  A  L  H  S  Q  N  I  P  Q  S  N  L  S  L  L  N  L  *  V  D  S  L  A  R  L  V  *  S  S  A  R  L  E  K  H  A  R  H  V  I  C  T  M  *  Y  *  L  *  Y  I  K  H  I  V  H  F  I  L  G  F  T  W  S  R  I  F  F  F  W  G  G  S  F  T  A  R  E  E  E  N  G  *  D  I  Y  L  F  S  Q  F  F  S  D  Y  C  F  L  S  S  S  *  L  V  Y  S  I  G  E  A  V  K  M  G  K  K  T  K  K  V  G  S  L  E  L  K  F  I  F  L  *  Q  K  F  W  F  L  R  F  S  N  K  C  N  F  P  C  L  N  F  </second_frame>
            <third_frame>   I  V  D  H  L  R  E  V  D  D  H  Q  V  E  T  R  T  Y  D  Q  Q  *  *  D  N  *  W  Q  R  C  V  C  S  C  C  I  W  R  W  T  Y  L  T  I  C  A  Q  C  D  C  P  Q  H  *  S  S  S  H  P  F  *  E  W  W  Y  D  *  R  F  C  *  T  Y  W  S  *  D  S  E  *  W  *  C  Y  F  P  F  R  C  *  P  Y  L  D  R  S  L  Y  F  N  Q  G  C  *  W  T  P  R  C  N  H  G  F  H  C  Y  H  H  F  *  L  Q  I  Q  P  S  Q  R   : R  Y  A  F  G  S  K  R  C  L  P  T  R  *  N  H  A  S  Y  S  C  I  Q  *  V  R  K  G  M  Y  S  K  D  A  K  V  Q  V  G  I  L  P  R  C  Q  Q  R  L  R  Q  M  G  N  V  C  Y  W  W  H  S  *  P  H  H  H  *  P  G  *  P  F  Q  G  C  R  Q  S  Q  H  *  R   : G  D  K  P  E  W  C  P  R  S  F  V  E  K  L  A  M  E  I  R  G  *  F  V  Q  E  R  S  L  L  *  G  V  W  T  R  N  Q  E  H  S  I  H  R  T  Y  H  N  P  I  *  A  C  *  I  C  R  *  T  H  S  Q  G  W  C  N  P  V  Q  D  W  K  S  M  L  G  M  L  Y  V  Q  C  N  I  N  Y  N  T  *  N  I  L  Y  I  S  F  W  G  L  H  G  A  E  Y  F  F  F  G  G  V  L  L  Q  Q  E  K  K  K  T  A  K  T  S  I  C  F  L  S  F  F  P  T  I  A  F  F  L  L  P  S  W  F  T  L  *  V  K  Q  *  R  W  G  R  K  R  K  K  W  V  L  W  S  S  S  L  S  F  C  N  R  S  F  G  F  Y  D  F  L  I  N  V  I  F  P  V  *  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44040" stop="44426"/>
                    <exon start="44528" stop="44770"/>
                    <exon start="45215" stop="45439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLWIIFEKSMIIRLKQELMINSNKTIDGRGVSVHVAYGGGLTLQFVHNVIVHNIRVHHILSKNGGMIRDSVKHIGLRTVSDGDAISLFGANRIWIDHCTLTKGADGLLDAIMASTAITISNCKFNHHNDVMLLGANDAFPQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAIGGTANPTIISQGNRFKAADNPNTKEVTNRNGAPEALWRNWQWRSEGDLFKNGAFFRESGPEIKSTPFTEHTTIQFEPAKFVGRLTRKAGVIQCKIGKAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45440" stop="45652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACYMYNVILIIIHKTYCTFHFGVYMEPNIFFLGGFFYSKRRRKRLRHLSVFSVFFRLLLSFFFLAGLLYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49839" PGL_stop="46004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49839" e_stop="49598"/>
            <exon e_start="49201" e_stop="49146"/>
            <exon e_start="48341" e_stop="48179"/>
            <exon e_start="48063" e_stop="47975"/>
            <exon e_start="47645" e_stop="47513"/>
            <exon e_start="47340" e_stop="47234"/>
            <exon e_start="47141" e_stop="47039"/>
            <exon e_start="46594" e_stop="46004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.888" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49839" e_stop="49598" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49201" e_stop="49146" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.814">
            <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48341" e_stop="48179" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.740">
            <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48063" e_stop="47975" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="47645" e_stop="47513" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.888">
            <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47340" e_stop="47234" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.712">
            <gDNA_intron_boundary i_start="47233" i_stop="47142" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47141" e_stop="47039" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47038" i_stop="46595" i_length="444"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="46594" e_stop="46004" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49839" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47513"/>
              <exon start="47340" stop="47265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49832" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49831" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49830" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47513"/>
              <exon start="47340" stop="47316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49830" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49830" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47273" stop="47234"/>
              <exon start="47141" stop="47039"/>
              <exon start="46594" stop="46004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46567" stop="46004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46329" stop="46005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG : GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG : GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG : GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG : TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA : TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGATGCTTCATGCACAAAGAGTAGCTGCTATTAAG : AAAGCAAAGGGGACACCTGCCGCTAGGAAACGTGCCTCAGAATCCATGAAAAGTTACTTCCGTGATCCAGATAACCGCCGCAAGAGAAGCATATCCATGAAAG : GGGTGAAATTTTACTGTAGAAATTGTGGACAGGAAGGACATAGGAGTAACTACTGTCCAGAAATTCGAGACAATACGGATAGACATTATAGATGTGGATTATGTGGAACAAAGGGTCATAACAGAAGAACTTGCTTAAAGTTGAGCTTAATTGTACCGAAAAAGACAGTTAAGGTTAATCATCATTGCAGCAAGTGTCAAAGAAGTGGCCATAACAGAAGAACATGCCACCAAAAGAATGAATTCGACACTAAAGTGGTTGCAACAATCAAGACTCGAGTAAAGAGAACTTATAGCTGCAGCGTGTGCTTAGGAAAAGGACACAACGCCAGGACATGTCTTCATAAAAGCAACTCCAAAAGCAGATAGTTATTTGTAAGGAAATCCCTTGATGTTTCGACTTTGTTTTCATATCTCGTTTAATGCATTATTCTGGTTTTTCCTCTTCTGTGCTTGTACATGTGATCGATCTCCCATTCAATTCTGATATTTCTTCGTTTTAAATGTTTGTTCGATTGAAAACTCTGGATCAATTTGCTCTAAGGTTGTGGAAAAATCTGTCTTGAATATAAAACTGTTATAAATATCATCA</gDNA_template>
            <first_frame> K  N  I  K  K  K  I  K  S  P  F  *  V  T  S  S  I  *  R  N  S  H  V  Q  C  Q  Q  Q  Y  G  H  Q  C  C  L  N  G  D  I  V  T  R  I  C  I  I  G  Y  Y  H  L  Q  K  L  N  L  A  S  F  I  Y  L  F  Y  L  L  S  L  I  I  M  I  L  Y  H  P  S  N  K  I  R :   L  C  M  T  L  Q  R  S  F  L  D  L  M  L  I  C  S  Q   : G  R  S  F  L  V  H  R  V  R  D  H  G  L  A  Q  M  D  S  I  *  E  N  C  L  V  Q  A  A  E  E  E  A  T  L  H  V  L  N  V  E  S  R  D  P  T  *  I  V  R  C  V  M  E  R :   V  *  *  L  V  I  S  V  V  E  I  V  S  F  G  K  S  L  S  M  N  G  L  G  R  K  L  D  Q   : V  H  L  *  K  *  K  K  T  M  K  W  T  T  *  T  *  S  L  T  R  R  E  K  P  S  V  S  T  N  L  P  T  Q  K  S  I  *  R  S  A  D  H  *  N :   W  M  I  A  E  P  K  C  Q  N  W  I  I  *  *  K  D  E  D  Y  P  W  R  S  D  A  S  C  T  K  S  S  C  Y  *   : E  S  K  G  D  T  C  R  *  E  T  C  L  R  I  H  E  K  L  L  P  *  S  R  *  P  P  Q  E  K  H  I  H  E  R :   G  E  I  L  L  *  K  L  W  T  G  R  T  *  E  *  L  L  S  R  N  S  R  Q  Y  G  *  T  L  *  M  W  I  M  W  N  K  G  S  *  Q  K  N  L  L  K  V  E  L  N  C  T  E  K  D  S  *  G  *  S  S  L  Q  Q  V  S  K  K  W  P  *  Q  K  N  M  P  P  K  E  *  I  R  H  *  S  G  C  N  N  Q  D  S  S  K  E  N  L  *  L  Q  R  V  L  R  K  R  T  Q  R  Q  D  M  S  S  *  K  Q  L  Q  K  Q  I  V  I  C  K  E  I  P  *  C  F  D  F  V  F  I  S  R  L  M  H  Y  S  G  F  S  S  S  V  L  V  H  V  I  D  L  P  F  N  S  D  I  S  S  F  *  M  F  V  R  L  K  T  L  D  Q  F  A  L  R  L  W  K  N  L  S  *  I  *  N  C  Y  K  Y  H   </first_frame>
            <second_frame>  K  T  S  K  R  K  *  N  L  H  F  K  S  L  L  Q  F  E  E  I  L  M  Y  N  V  N  N  N  M  V  I  N  V  A  S  M  E  I  L  *  Q  E  F  A  L  L  D  I  T  T  F  K  N  *  T  *  L  L  L  F  T  Y  F  I  F  F  H  *  *  *  *  F  C  I  T  H  Q  T  K  S   : G  Y  V  *  P  F  R  G  A  F  W  T  *  C  *  F  A  A  K  :  E  G  H  F  *  F  I  E  S  E  I  M  V  W  P  K  W  T  V  Y  K  R  T  A  L  S  K  L  Q  R  K  R  L  H  F  M  Y  *  M  W  N  R  E  I  Q  L  R  L  F  V  V  *  W  K   : G  Y  D  N  L  S  S  V  W  W  R  L  C  H  L  G  R  V  Y  R  *  T  A  L  G  E  S  S  I  K  :  F  T  F  K  S  K  R  R  R  *  S  G  R  L  R  H  K  A  *  R  E  E  K  N  Q  A  C  L  P  I  S  Q  H  R  S  Q  F  E  D  Q  Q  I  T  K   : I  G  *  L  Q  S  L  N  A  K  T  G  L  F  S  K  R  M  K  I  I  H  G  D  P  M  L  H  A  Q  R  V  A  A  I  K  :  K  A  K  G  T  P  A  A  R  K  R  A  S  E  S  M  K  S  Y  F  R  D  P  D  N  R  R  K  R  S  I  S  M  K   : G  V  K  F  Y  C  R  N  C  G  Q  E  G  H  R  S  N  Y  C  P  E  I  R  D  N  T  D  R  H  Y  R  C  G  L  C  G  T  K  G  H  N  R  R  T  C  L  K  L  S  L  I  V  P  K  K  T  V  K  V  N  H  H  C  S  K  C  Q  R  S  G  H  N  R  R  T  C  H  Q  K  N  E  F  D  T  K  V  V  A  T  I  K  T  R  V  K  R  T  Y  S  C  S  V  C  L  G  K  G  H  N  A  R  T  C  L  H  K  S  N  S  K  S  R  *  L  F  V  R  K  S  L  D  V  S  T  L  F  S  Y  L  V  *  C  I  I  L  V  F  P  L  L  C  L  Y  M  *  S  I  S  H  S  I  L  I  F  L  R  F  K  C  L  F  D  *  K  L  W  I  N  L  L  *  G  C  G  K  I  C  L  E  Y  K  T  V  I  N  I  I  </second_frame>
            <third_frame>   K  H  Q  K  E  N  K  I  S  I  L  S  H  F  F  N  L  K  K  F  S  C  T  M  S  T  T  I  W  S  S  M  L  P  Q  W  R  Y  C  N  K  N  L  H  Y  W  I  L  P  P  S  K  T  K  L  S  F  F  Y  L  P  I  L  S  S  F  T  N  N  N  D  S  V  S  P  I  K  Q  N  Q  :  A  M  Y  D  P  S  E  E  L  F  G  L  D  A  D  L  Q  P  R :   K  V  I  S  S  S  S  S  P  R  S  W  F  G  P  N  G  Q  Y  I  R  E  L  P  C  P  S  C  R  G  R  G  Y  T  S  C  T  E  C  G  I  E  R  S  N  L  D  C  S  L  C  N  G  K  :  G  M  I  T  C  H  Q  C  G  G  D  C  V  I  W  E  E  S  I  D  E  R  P  W  E  K  A  R  S  S :   S  P  L  K  V  K  E  D  D  E  V  D  D  L  D  I  K  L  D  A  K  R  K  T  K  R  V  Y  Q  S  P  N  T  E  V  N  L  K  I  S  R  S  L  K  :  L  D  D  C  R  A  *  M  P  K  L  D  Y  L  V  K  G  *  R  L  S  M  A  I  R  C  F  M  H  K  E  *  L  L  L  R :   K  Q  R  G  H  L  P  L  G  N  V  P  Q  N  P  *  K  V  T  S  V  I  Q  I  T  A  A  R  E  A  Y  P  *  K  :  G  *  N  F  T  V  E  I  V  D  R  K  D  I  G  V  T  T  V  Q  K  F  E  T  I  R  I  D  I  I  D  V  D  Y  V  E  Q  R  V  I  T  E  E  L  A  *  S  *  A  *  L  Y  R  K  R  Q  L  R  L  I  I  I  A  A  S  V  K  E  V  A  I  T  E  E  H  A  T  K  R  M  N  S  T  L  K  W  L  Q  Q  S  R  L  E  *  R  E  L  I  A  A  A  C  A  *  E  K  D  T  T  P  G  H  V  F  I  K  A  T  P  K  A  D  S  Y  L  *  G  N  P  L  M  F  R  L  C  F  H  I  S  F  N  A  L  F  W  F  F  L  F  C  A  C  T  C  D  R  S  P  I  Q  F  *  Y  F  F  V  L  N  V  C  S  I  E  N  S  G  S  I  C  S  K  V  V  E  K  S  V  L  N  I  K  L  L  *  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49837" stop="49598"/>
                    <exon start="49201" stop="49146"/>
                    <exon start="48341" stop="48179"/>
                    <exon start="48063" stop="47975"/>
                    <exon start="47645" stop="47513"/>
                    <exon start="47340" stop="47320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHQKENKISILSHFFNLKKFSCTMSTTIWSSMLPQWRYCNKNLHYWILPPSKTKLSFFYLPILSSFTNNNDSVSPIKQNQAMYDPSEELFGLDADLQPRKVISSSSSPRSWFGPNGQYIRELPCPSCRGRGYTSCTECGIERSNLDCSLCNGKGMITCHQCGGDCVIWEESIDERPWEKARSSSPLKVKEDDEVDDLDIKLDAKRKTKRVYQSPNTEVNLKISRSLKLDDCRA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47332" stop="47234"/>
                    <exon start="47141" stop="47039"/>
                    <exon start="46594" stop="46227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQSLNAKTGLFSKRMKIIHGDPMLHAQRVAAIKKAKGTPAARKRASESMKSYFRDPDNRRKRSISMKGVKFYCRNCGQEGHRSNYCPEIRDNTDRHYRCGLCGTKGHNRRTCLKLSLIVPKKTVKVNHHCSKCQRSGHNRRTCHQKNEFDTKVVATIKTRVKRTYSCSVCLGKGHNARTCLHKSNSKSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="50493" PGL_stop="53999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50493" e_stop="50874"/>
            <exon e_start="51854" e_stop="51951"/>
            <exon e_start="52060" e_stop="52152"/>
            <exon e_start="52382" e_stop="52476"/>
            <exon e_start="52699" e_stop="52772"/>
            <exon e_start="52871" e_stop="52959"/>
            <exon e_start="53604" e_stop="53999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50493" e_stop="50874" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50875" i_stop="51853" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51854" e_stop="51951" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.822">
            <gDNA_intron_boundary i_start="51952" i_stop="52059" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52060" e_stop="52152" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="52153" i_stop="52381" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52382" e_stop="52476" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52477" i_stop="52698" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52699" e_stop="52772" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.984">
            <gDNA_intron_boundary i_start="52773" i_stop="52870" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52959" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.898">
            <gDNA_intron_boundary i_start="52960" i_stop="53603" i_length="644"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="53604" e_stop="53999" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50874"/>
              <exon start="51854" stop="51951"/>
              <exon start="52060" stop="52152"/>
              <exon start="52382" stop="52476"/>
              <exon start="52699" stop="52731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50874"/>
              <exon start="51854" stop="51951"/>
              <exon start="52060" stop="52152"/>
              <exon start="52382" stop="52401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50493" stop="50809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50497" stop="50874"/>
              <exon start="51854" stop="51951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50503" stop="50874"/>
              <exon start="51854" stop="51951"/>
              <exon start="52060" stop="52138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51928" stop="51951"/>
              <exon start="52060" stop="52152"/>
              <exon start="52382" stop="52476"/>
              <exon start="52699" stop="52772"/>
              <exon start="52871" stop="52959"/>
              <exon start="53604" stop="53623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52400" stop="52476"/>
              <exon start="52699" stop="52772"/>
              <exon start="52871" stop="52959"/>
              <exon start="53604" stop="53999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52906" stop="52959"/>
              <exon start="53604" stop="53989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52906" stop="52959"/>
              <exon start="53604" stop="53989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGTGCTTATACACTACTCTAATAGAGCTTGCTCCAAGAAGGGGTCTTTCCAAATTCCACTTTTGATTCTTGTTTTAGCAAAATTCTTGTAAAAAGATTGAATCTTTGTTACCCCTTTTGCCTAAAATCTCTTGTAGCCATGTCTGTCTTCTCTCTTTCTGCTTCCCCTGCTTCAGGTTTTAGTCTAAACCCTACTAAAACCTCTTCTTATCTCTCTTTTTCCTCTTCCATTAATACCATTTTTGCTCCTTTAACTTCCAACACAACAAAAAGCTTTTCTGGTTTGACCTATAAAGCAGCTTTGCCTAGAAATCTTTCTTTAACATGTCGCCATTCTGATTATTTTGAACCCCAACAGCAACAGCAGCAGCTACAGG : GGGCATCTACGCCTAAGGTTTTTGTTGGATACTCAATATACAAAGGGAAGGCAGCTCTCACTGTGGAGCCTCGGTCACCAGAGTTCTCACCTTTAGAT : TCAGGGGCCTTCAAGCTGTCAAAAGAGGGTATGGTGATGCTTCAATTTGCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAG : GTCTTCTCGCTGTCAGTGACTGAAATTGGATCTATCATCAGCCTTGGGGCAAAAGATTCATGTGAGTTTTTCCATGATCCAAACAAAGGAAGAAG : TGATGAAGGTAGAGTCAGGAAAGTGTTGAAGGTTGAGCCACTTCCAGATGGCTCCGGTCACTTCTTTAATCTCA : GTGTTCAGAACAAGCTTATTAATTTGGACGAGAACATTTACATCCCAGTTACAAAGGCAGAGTTCGCAGTTCTTGTCTCCGCATTCAAT : TTTGTTATGCCATACCTTTTAGGTTGGCACACTGCTGTAAATTCCTTCAAGCCTGAAGACGCCAGTCGCTCAAACAATACTAATCCAAGATCAGGTGCTGAACTTGAATGGAATCGATAGTTCTGGTGAAGGTATGAGCACGTTGCCTGTACTACGATTGCAGGGGCAATATGTTCCTTCATCCCCTGGATCGACATTTTGTATGAACCCTCATTCACTTGCACCCTCCAATGAGTTCTAATCGACGATAGTAGTATTAACTCTCTTCTTGTAATGCTGATTTACTGTAAGTTGTGTTTTATTGTGTAGCAGTAGAAACTCATTAACTGATTATCCTGATTCCTGTTGAATGTGAAATCCAGTCTAGTTTTTGTTAAATGTATTTGGCTCTTTATT</gDNA_template>
            <first_frame> K  I  C  A  Y  T  L  L  *  *  S  L  L  Q  E  G  V  F  P  N  S  T  F  D  S  C  F  S  K  I  L  V  K  R  L  N  L  C  Y  P  F  C  L  K  S  L  V  A  M  S  V  F  S  L  S  A  S  P  A  S  G  F  S  L  N  P  T  K  T  S  S  Y  L  S  F  S  S  S  I  N  T  I  F  A  P  L  T  S  N  T  T  K  S  F  S  G  L  T  Y  K  A  A  L  P  R  N  L  S  L  T  C  R  H  S  D  Y  F  E  P  Q  Q  Q  Q  Q  Q  L  Q   : G  A  S  T  P  K  V  F  V  G  Y  S  I  Y  K  G  K  A  A  L  T  V  E  P  R  S  P  E  F  S  P  L  D  :  S  G  A  F  K  L  S  K  E  G  M  V  M  L  Q  F  A  P  A  A  G  V  R  Q  Y  D  W  S  R  K  Q  :  V  F  S  L  S  V  T  E  I  G  S  I  I  S  L  G  A  K  D  S  C  E  F  F  H  D  P  N  K  G  R  S :   D  E  G  R  V  R  K  V  L  K  V  E  P  L  P  D  G  S  G  H  F  F  N  L   : S  V  Q  N  K  L  I  N  L  D  E  N  I  Y  I  P  V  T  K  A  E  F  A  V  L  V  S  A  F  N  :  F  V  M  P  Y  L  L  G  W  H  T  A  V  N  S  F  K  P  E  D  A  S  R  S  N  N  T  N  P  R  S  G  A  E  L  E  W  N  R  *  F  W  *  R  Y  E  H  V  A  C  T  T  I  A  G  A  I  C  S  F  I  P  W  I  D  I  L  Y  E  P  S  F  T  C  T  L  Q  *  V  L  I  D  D  S  S  I  N  S  L  L  V  M  L  I  Y  C  K  L  C  F  I  V  *  Q  *  K  L  I  N  *  L  S  *  F  L  L  N  V  K  S  S  L  V  F  V  K  C  I  W  L  F  I </first_frame>
            <second_frame>  K  F  V  L  I  H  Y  S  N  R  A  C  S  K  K  G  S  F  Q  I  P  L  L  I  L  V  L  A  K  F  L  *  K  D  *  I  F  V  T  P  F  A  *  N  L  L  *  P  C  L  S  S  L  F  L  L  P  L  L  Q  V  L  V  *  T  L  L  K  P  L  L  I  S  L  F  P  L  P  L  I  P  F  L  L  L  *  L  P  T  Q  Q  K  A  F  L  V  *  P  I  K  Q  L  C  L  E  I  F  L  *  H  V  A  I  L  I  I  L  N  P  N  S  N  S  S  S  Y  R  :  G  H  L  R  L  R  F  L  L  D  T  Q  Y  T  K  G  R  Q  L  S  L  W  S  L  G  H  Q  S  S  H  L  *  I :   Q  G  P  S  S  C  Q  K  R  V  W  *  C  F  N  L  H  P  L  L  V  F  V  N  M  I  G  V  E  S  R :   S  S  R  C  Q  *  L  K  L  D  L  S  S  A  L  G  Q  K  I  H  V  S  F  S  M  I  Q  T  K  E  E   : V  M  K  V  E  S  G  K  C  *  R  L  S  H  F  Q  M  A  P  V  T  S  L  I  S  :  V  F  R  T  S  L  L  I  W  T  R  T  F  T  S  Q  L  Q  R  Q  S  S  Q  F  L  S  P  H  S  I :   L  L  C  H  T  F  *  V  G  T  L  L  *  I  P  S  S  L  K  T  P  V  A  Q  T  I  L  I  Q  D  Q  V  L  N  L  N  G  I  D  S  S  G  E  G  M  S  T  L  P  V  L  R  L  Q  G  Q  Y  V  P  S  S  P  G  S  T  F  C  M  N  P  H  S  L  A  P  S  N  E  F  *  S  T  I  V  V  L  T  L  F  L  *  C  *  F  T  V  S  C  V  L  L  C  S  S  R  N  S  L  T  D  Y  P  D  S  C  *  M  *  N  P  V  *  F  L  L  N  V  F  G  S  L   </second_frame>
            <third_frame>   N  L  C  L  Y  T  T  L  I  E  L  A  P  R  R  G  L  S  K  F  H  F  *  F  L  F  *  Q  N  S  C  K  K  I  E  S  L  L  P  L  L  P  K  I  S  C  S  H  V  C  L  L  S  F  C  F  P  C  F  R  F  *  S  K  P  Y  *  N  L  F  L  S  L  F  F  L  F  H  *  Y  H  F  C  S  F  N  F  Q  H  N  K  K  L  F  W  F  D  L  *  S  S  F  A  *  K  S  F  F  N  M  S  P  F  *  L  F  *  T  P  T  A  T  A  A  A  T  G :   G  I  Y  A  *  G  F  C  W  I  L  N  I  Q  R  E  G  S  S  H  C  G  A  S  V  T  R  V  L  T  F  R   : F  R  G  L  Q  A  V  K  R  G  Y  G  D  A  S  I  C  T  R  C  W  C  S  S  I  *  L  E  *  K  A   : G  L  L  A  V  S  D  *  N  W  I  Y  H  Q  P  W  G  K  R  F  M  *  V  F  P  *  S  K  Q  R  K  K  :  *  *  R  *  S  Q  E  S  V  E  G  *  A  T  S  R  W  L  R  S  L  L  *  S  Q :   C  S  E  Q  A  Y  *  F  G  R  E  H  L  H  P  S  Y  K  G  R  V  R  S  S  C  L  R  I  Q   : F  C  Y  A  I  P  F  R  L  A  H  C  C  K  F  L  Q  A  *  R  R  Q  S  L  K  Q  Y  *  S  K  I  R  C  *  T  *  M  E  S  I  V  L  V  K  V  *  A  R  C  L  Y  Y  D  C  R  G  N  M  F  L  H  P  L  D  R  H  F  V  *  T  L  I  H  L  H  P  P  M  S  S  N  R  R  *  *  Y  *  L  S  S  C  N  A  D  L  L  *  V  V  F  Y  C  V  A  V  E  T  H  *  L  I  I  L  I  P  V  E  C  E  I  Q  S  S  F  C  *  M  Y  L  A  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50523" stop="50874"/>
                    <exon start="51854" stop="51951"/>
                    <exon start="52060" stop="52152"/>
                    <exon start="52382" stop="52476"/>
                    <exon start="52699" stop="52772"/>
                    <exon start="52871" stop="52959"/>
                    <exon start="53604" stop="53723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLQEGVFPNSTFDSCFSKILVKRLNLCYPFCLKSLVAMSVFSLSASPASGFSLNPTKTSSYLSFSSSINTIFAPLTSNTTKSFSGLTYKAALPRNLSLTCRHSDYFEPQQQQQQLQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSKEGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNTNPRSGAELEWNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="57283" PGL_stop="59336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57283" e_stop="57313"/>
            <exon e_start="57975" e_stop="58490"/>
            <exon e_start="58644" e_stop="58757"/>
            <exon e_start="59258" e_stop="59336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.872" e_score="0.990"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57283" e_stop="57313" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="57314" i_stop="57974" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57975" e_stop="58490" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58491" i_stop="58643" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="58644" e_stop="58757" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.872">
            <gDNA_intron_boundary i_start="58758" i_stop="59257" i_length="500"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="59258" e_stop="59336" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57283" stop="57313"/>
              <exon start="57975" stop="58490"/>
              <exon start="58644" stop="58757"/>
              <exon start="59258" stop="59336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57283" stop="57313"/>
              <exon start="57975" stop="58490"/>
              <exon start="58644" stop="58747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57284" stop="57313"/>
              <exon start="57975" stop="58490"/>
              <exon start="58644" stop="58683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGATAGAGCAATGGATTCTACTAAGAAG : GATGAAGATAAGCTAAATTCAACAAAATGTGAGATATATGAAGCCAAAGAAGAAAATGAAAGGCTAAAAAGGATGTTATCTAAAATGATGAATGATTATAAATCTTTGGAAATGTATTTTCAAGGCATATTAACTCAAAAAAATACAAAGAATATTATTGCAACAAGTAATAATATTCATGAAGAAAAAGAACAAGTGGAACTTGTTTCTTTGAGCTTAGGGAGAAATAGTAGTACTTCAAGAGAGTTGATCAAGAAGGAGTTATTATATGATGATCAAAATAAAAGTAATAAAAACCATAGTAAATTATTATTTGATGGGCTTGAGCTTGGATTAGGTTGTAAATTCACTCAAGAAAATAGTTTCGAGGGGCCAAAGAAGGAGAATATAAATAATGAACGACGAGTATTGATACAAAATTACCTTCCATCGGATTACTGTGGCGAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTACG : ATGAATGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCTAAAGGGAATCCATGCCCTAGGGCTTACTATCGTTGCACCGTCTCCCCCTCATGCCCAGTCAGGAAACAG : GTTCAAAGATGTTCTAAAGACACGTCCATTTTGACCACTACATATGAAGGAACACATAATCACCCCCTTCCATTTTCTG</gDNA_template>
            <first_frame> E  R  *  S  N  G  F  Y  *  E   : G  *  R  *  A  K  F  N  K  M  *  D  I  *  S  Q  R  R  K  *  K  A  K  K  D  V  I  *  N  D  E  *  L  *  I  F  G  N  V  F  S  R  H  I  N  S  K  K  Y  K  E  Y  Y  C  N  K  *  *  Y  S  *  R  K  R  T  S  G  T  C  F  F  E  L  R  E  K  *  *  Y  F  K  R  V  D  Q  E  G  V  I  I  *  *  S  K  *  K  *  *  K  P  *  *  I  I  I  *  W  A  *  A  W  I  R  L  *  I  H  S  R  K  *  F  R  G  A  K  E  G  E  Y  K  *  *  T  T  S  I  D  T  K  L  P  S  I  G  L  L  W  R  R  I  F  A  A  N  S  S  K  E  G  *  S  I  Y  T  G  C  V  *  H  Y  Y   : D  E  *  W  M  S  M  E  K  I  W  T  K  N  S  *  R  E  S  M  P  *  G  L  L  S  L  H  R  L  P  L  M  P  S  Q  E  T   : G  S  K  M  F  *  R  H  V  H  F  D  H  Y  I  *  R  N  T  *  S  P  P  S  I  F   </first_frame>
            <second_frame>  K  D  R  A  M  D  S  T  K  K  :  D  E  D  K  L  N  S  T  K  C  E  I  Y  E  A  K  E  E  N  E  R  L  K  R  M  L  S  K  M  M  N  D  Y  K  S  L  E  M  Y  F  Q  G  I  L  T  Q  K  N  T  K  N  I  I  A  T  S  N  N  I  H  E  E  K  E  Q  V  E  L  V  S  L  S  L  G  R  N  S  S  T  S  R  E  L  I  K  K  E  L  L  Y  D  D  Q  N  K  S  N  K  N  H  S  K  L  L  F  D  G  L  E  L  G  L  G  C  K  F  T  Q  E  N  S  F  E  G  P  K  K  E  N  I  N  N  E  R  R  V  L  I  Q  N  Y  L  P  S  D  Y  C  G  E  E  F  L  Q  Q  I  P  Q  K  K  A  R  V  S  I  R  A  V  C  D  T  I  T  :  M  N  D  G  C  Q  W  R  K  Y  G  Q  K  I  A  K  G  N  P  C  P  R  A  Y  Y  R  C  T  V  S  P  S  C  P  V  R  K  Q  :  V  Q  R  C  S  K  D  T  S  I  L  T  T  T  Y  E  G  T  H  N  H  P  L  P  F  S  </second_frame>
            <third_frame>   K  I  E  Q  W  I  L  L  R  R :   M  K  I  S  *  I  Q  Q  N  V  R  Y  M  K  P  K  K  K  M  K  G  *  K  G  C  Y  L  K  *  *  M  I  I  N  L  W  K  C  I  F  K  A  Y  *  L  K  K  I  Q  R  I  L  L  Q  Q  V  I  I  F  M  K  K  K  N  K  W  N  L  F  L  *  A  *  G  E  I  V  V  L  Q  E  S  *  S  R  R  S  Y  Y  M  M  I  K  I  K  V  I  K  T  I  V  N  Y  Y  L  M  G  L  S  L  D  *  V  V  N  S  L  K  K  I  V  S  R  G  Q  R  R  R  I  *  I  M  N  D  E  Y  *  Y  K  I  T  F  H  R  I  T  V  A  K  N  F  C  S  K  F  L  K  R  R  L  E  Y  L  Y  G  L  C  V  T  L  L  R :   *  M  M  D  V  N  G  E  N  M  D  K  K  *  L  K  G  I  H  A  L  G  L  T  I  V  A  P  S  P  P  H  A  Q  S  G  N  R :   F  K  D  V  L  K  T  R  P  F  *  P  L  H  M  K  E  H  I  I  T  P  F  H  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57284" stop="57313"/>
                    <exon start="57975" stop="58490"/>
                    <exon start="58644" stop="58757"/>
                    <exon start="59258" stop="59335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAMDSTKKDEDKLNSTKCEIYEAKEENERLKRMLSKMMNDYKSLEMYFQGILTQKNTKNIIATSNNIHEEKEQVELVSLSLGRNSSTSRELIKKELLYDDQNKSNKNHSKLLFDGLELGLGCKFTQENSFEGPKKENINNERRVLIQNYLPSDYCGEEFLQQIPQKKARVSIRAVCDTITMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRCSKDTSILTTTYEGTHNHPLPFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="59579" PGL_stop="60366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59579" e_stop="60366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="59579" e_stop="60366" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59579" stop="60366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59644" stop="60366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACAAACTCATCAAGTACTAATTCTTCATCATCCAATTCCTACTCCACATTGTGTAATAATATCAAAAGTGAAATTGGACCTTCTTCATATCTAGGGAGGCCATGTTATTCTAATCAGCCTTATATTACTTCAAAAGAACAATCAGAACATGATCGTTCAGTACAGTGCCGGAGTCAGAATTTTTGATGAATTAATTCAAAAAAAAATGCAAAAGTATCACATAGGATTTGATCATGTGACCTAAAATGAATTTTGGACTACTTTTTGTACATTAAAGTAGAATCTTCTTTTATACGAAAGGAAGACTATTTTTGTTTTTATTTTATATGTACGGTATAATTTTTTTGCAAAAGATATTTCTTTATCAACTTATAGAAATCCTCAACAATTGTATTTATATGACACTATTTACTTTTTAGTCTCTCATAAAAAAAGGTCTTTTTCATATTCGGAAAAAATTGAACTTTAAAACTTCCCATGTTGCTCTTAGCAACATGTTTTTAAGACTCTTTTAAACTCCGTGCCTAATCGGGTTCAACATAAGATGAAATGGATTAAGTACTAATGAAGAGTAGTAGTAATAGATTTTTCTAACGGTGAATTAGTGAGAAATTTGTGTTATACAACATGTTTTTCCATTTATTTCCACCAAATCAGTTCACTGGGAATATGCTAGATTCTCAATGAAATAGTAAATTTTCTAATTTTATTGTATGAGAGCATTACTATTTTTCATCAATTCAATCAAAATATCAGTGAACATATCATGACCATAGAGACTGCAT</gDNA_template>
            <first_frame> T  T  N  S  S  S  T  N  S  S  S  S  N  S  Y  S  T  L  C  N  N  I  K  S  E  I  G  P  S  S  Y  L  G  R  P  C  Y  S  N  Q  P  Y  I  T  S  K  E  Q  S  E  H  D  R  S  V  Q  C  R  S  Q  N  F  *  *  I  N  S  K  K  N  A  K  V  S  H  R  I  *  S  C  D  L  K  *  I  L  D  Y  F  L  Y  I  K  V  E  S  S  F  I  R  K  E  D  Y  F  C  F  Y  F  I  C  T  V  *  F  F  C  K  R  Y  F  F  I  N  L  *  K  S  S  T  I  V  F  I  *  H  Y  L  L  F  S  L  S  *  K  K  V  F  F  I  F  G  K  N  *  T  L  K  L  P  M  L  L  L  A  T  C  F  *  D  S  F  K  L  R  A  *  S  G  S  T  *  D  E  M  D  *  V  L  M  K  S  S  S  N  R  F  F  *  R  *  I  S  E  K  F  V  L  Y  N  M  F  F  H  L  F  P  P  N  Q  F  T  G  N  M  L  D  S  Q  *  N  S  K  F  S  N  F  I  V  *  E  H  Y  Y  F  S  S  I  Q  S  K  Y  Q  *  T  Y  H  D  H  R  D  C   </first_frame>
            <second_frame>  L  Q  T  H  Q  V  L  I  L  H  H  P  I  P  T  P  H  C  V  I  I  S  K  V  K  L  D  L  L  H  I  *  G  G  H  V  I  L  I  S  L  I  L  L  Q  K  N  N  Q  N  M  I  V  Q  Y  S  A  G  V  R  I  F  D  E  L  I  Q  K  K  M  Q  K  Y  H  I  G  F  D  H  V  T  *  N  E  F  W  T  T  F  C  T  L  K  *  N  L  L  L  Y  E  R  K  T  I  F  V  F  I  L  Y  V  R  Y  N  F  F  A  K  D  I  S  L  S  T  Y  R  N  P  Q  Q  L  Y  L  Y  D  T  I  Y  F  L  V  S  H  K  K  R  S  F  S  Y  S  E  K  I  E  L  *  N  F  P  C  C  S  *  Q  H  V  F  K  T  L  L  N  S  V  P  N  R  V  Q  H  K  M  K  W  I  K  Y  *  *  R  V  V  V  I  D  F  S  N  G  E  L  V  R  N  L  C  Y  T  T  C  F  S  I  Y  F  H  Q  I  S  S  L  G  I  C  *  I  L  N  E  I  V  N  F  L  I  L  L  Y  E  S  I  T  I  F  H  Q  F  N  Q  N  I  S  E  H  I  M  T  I  E  T  A  </second_frame>
            <third_frame>   Y  K  L  I  K  Y  *  F  F  I  I  Q  F  L  L  H  I  V  *  *  Y  Q  K  *  N  W  T  F  F  I  S  R  E  A  M  L  F  *  S  A  L  Y  Y  F  K  R  T  I  R  T  *  S  F  S  T  V  P  E  S  E  F  L  M  N  *  F  K  K  K  C  K  S  I  T  *  D  L  I  M  *  P  K  M  N  F  G  L  L  F  V  H  *  S  R  I  F  F  Y  T  K  G  R  L  F  L  F  L  F  Y  M  Y  G  I  I  F  L  Q  K  I  F  L  Y  Q  L  I  E  I  L  N  N  C  I  Y  M  T  L  F  T  F  *  S  L  I  K  K  G  L  F  H  I  R  K  K  L  N  F  K  T  S  H  V  A  L  S  N  M  F  L  R  L  F  *  T  P  C  L  I  G  F  N  I  R  *  N  G  L  S  T  N  E  E  *  *  *  *  I  F  L  T  V  N  *  *  E  I  C  V  I  Q  H  V  F  P  F  I  S  T  K  S  V  H  W  E  Y  A  R  F  S  M  K  *  *  I  F  *  F  Y  C  M  R  A  L  L  F  F  I  N  S  I  K  I  S  V  N  I  S  *  P  *  R  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0058L13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="61438" PGL_stop="60491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61438" e_stop="61415"/>
            <exon e_start="61303" e_stop="61192"/>
            <exon e_start="60902" e_stop="60491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.380" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61438" e_stop="61415" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.380">
            <gDNA_intron_boundary i_start="61414" i_stop="61304" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61303" e_stop="61192" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61191" i_stop="60903" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60902" e_stop="60491" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61438" stop="61415"/>
              <exon start="61303" stop="61192"/>
              <exon start="60902" stop="60502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61303" stop="61192"/>
              <exon start="60902" stop="60491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61279" stop="61192"/>
              <exon start="60902" stop="60493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGGACCAGACCACTTTACCAG : CGCGAAGGAAGCAGAAAAGGAAGACATTTATCAGTTGGGAATTATTCTACTAGAGGTTATTATTGGTAGACCAATCAACTCTCGAAGCGAAGCAGAAGACCTTAAGCTTCAG : GTGGAGACTGCCTTATCGGAATCACCATCAAAGCTACGAGATTTAACAGATCCTTGTATACGAGGTACGTTTGCATATGACTCATTGAAAACGACAGTCCAGATAGCAATAAACTGCCTTGATAAAGAACCAAGCAGGCGTCCATCAGTCGAAGACGTTCTCTGGCATATGCAATACTCAATTCAGGTTCAAGAAGGAGCAACTAACAGTGGAAACCTCAGTGGGAACCAAAGTGGGAAACTCAGTGGAAAAATAAGTGGAAATCTTAATAATAAGTTTTACTGATAATAGAGAACTGTCATTATATTGTTATATCTTGTTGTTTAGTCATTTGTATGCATCTTGTACAGCACAGTTCAGTAACTTACTGAATAAATGATTTTGCTTTCTACATCACAAAAATGTACACCAA</gDNA_template>
            <first_frame> C  W  T  R  P  L  Y  Q  :  R  E  G  S  R  K  G  R  H  L  S  V  G  N  Y  S  T  R  G  Y  Y  W  *  T  N  Q  L  S  K  R  S  R  R  P  *  A  S   : G  G  D  C  L  I  G  I  T  I  K  A  T  R  F  N  R  S  L  Y  T  R  Y  V  C  I  *  L  I  E  N  D  S  P  D  S  N  K  L  P  *  *  R  T  K  Q  A  S  I  S  R  R  R  S  L  A  Y  A  I  L  N  S  G  S  R  R  S  N  *  Q  W  K  P  Q  W  E  P  K  W  E  T  Q  W  K  N  K  W  K  S  *  *  *  V  L  L  I  I  E  N  C  H  Y  I  V  I  S  C  C  L  V  I  C  M  H  L  V  Q  H  S  S  V  T  Y  *  I  N  D  F  A  F  Y  I  T  K  M  Y  T   </first_frame>
            <second_frame>  A  G  P  D  H  F  T  S :   A  K  E  A  E  K  E  D  I  Y  Q  L  G  I  I  L  L  E  V  I  I  G  R  P  I  N  S  R  S  E  A  E  D  L  K  L  Q  :  V  E  T  A  L  S  E  S  P  S  K  L  R  D  L  T  D  P  C  I  R  G  T  F  A  Y  D  S  L  K  T  T  V  Q  I  A  I  N  C  L  D  K  E  P  S  R  R  P  S  V  E  D  V  L  W  H  M  Q  Y  S  I  Q  V  Q  E  G  A  T  N  S  G  N  L  S  G  N  Q  S  G  K  L  S  G  K  I  S  G  N  L  N  N  K  F  Y  *  *  *  R  T  V  I  I  L  L  Y  L  V  V  *  S  F  V  C  I  L  Y  S  T  V  Q  *  L  T  E  *  M  I  L  L  S  T  S  Q  K  C  T  P  </second_frame>
            <third_frame>   L  D  Q  T  T  L  P   : A  R  R  K  Q  K  R  K  T  F  I  S  W  E  L  F  Y  *  R  L  L  L  V  D  Q  S  T  L  E  A  K  Q  K  T  L  S  F  R :   W  R  L  P  Y  R  N  H  H  Q  S  Y  E  I  *  Q  I  L  V  Y  E  V  R  L  H  M  T  H  *  K  R  Q  S  R  *  Q  *  T  A  L  I  K  N  Q  A  G  V  H  Q  S  K  T  F  S  G  I  C  N  T  Q  F  R  F  K  K  E  Q  L  T  V  E  T  S  V  G  T  K  V  G  N  S  V  E  K  *  V  E  I  L  I  I  S  F  T  D  N  R  E  L  S  L  Y  C  Y  I  L  L  F  S  H  L  Y  A  S  C  T  A  Q  F  S  N  L  L  N  K  *  F  C  F  L  H  H  K  N  V  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61437" stop="61415"/>
                    <exon start="61303" stop="61192"/>
                    <exon start="60902" stop="60618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGPDHFTSAKEAEKEDIYQLGIILLEVIIGRPINSRSEAEDLKLQVETALSESPSKLRDLTDPCIRGTFAYDSLKTTVQIAINCLDKEPSRRPSVEDVLWHMQYSIQVQEGATNSGNLSGNQSGKLSGKISGNLNNKFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="64235" PGL_stop="61929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64235" e_stop="62886"/>
            <exon e_start="62597" e_stop="62464"/>
            <exon e_start="62155" e_stop="61929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.989" e_score="0.999"/>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="64235" e_stop="62886" e_length="1350"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62885" i_stop="62598" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62597" e_stop="62464" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="62463" i_stop="62156" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62155" e_stop="61929" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64235" stop="63994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64230" stop="63687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64228" stop="63613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64216" stop="63769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64207" stop="63331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64147" stop="63752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64098" stop="63558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63711" stop="63190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63709" stop="63384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63333" stop="62886"/>
              <exon start="62597" stop="62464"/>
              <exon start="62155" stop="61929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTCTATTATAGATTCTTGAATTATATCATTCTTCAACTTCACAAAAAAATTTTAAAAAAAGTGCTCACTCTTTTGTGAGCTCAAAAGATTGTTTTTTTTGGGGATTTTGAGTCTTTTAGCTATGAAGGGTGTGTTGTTTCTTGGTTTGTTTTTGTTTTTTCAAGTTCCATTTTCATCATCTCAGTTAGTTCCTGCAGAAAGTAGAATCCTTTTTCAAATTCAACAGTTTCTTGAAAATCCACCTGTTCTTCAACAATGGAATAAATGGACAAATTTTTGTTTTATCCCACAATCTCCTTCTCTTGTTATCACTTGTTCTGGTAATCATATAACTGAGTTAACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGGAAATTTTCAATTGATTCATTTTTCACTGTTGTTACTAAGCTTTCTAGTTTAAAAAAGCTATCTTTAGTGTCTCTTGGTTTGTGGGGTTCATTGCCTGCTAAGATTAGTAGGTTACATTCACTTGAGGTACTTAATATTAGTTCAAATTTCATTCTTGGTGAGATTCCATCATCTATAGTGAATTTAAAGAACCTGAAATCTCTTGTTTTAGCTAGAAATTTGTTTAATGGAAGTGTACCAGATCTGAAAGGGTTAAAGTTACTTGAAGAGTTGGATTTGAGTGGTAATAATTTAGGACCAAAGTTTCCATCTTTAGGTGATTACAATAACAATAATCTTGTCTCATTGAATTTGAGTAACAATTTCTTTAGATCAGAAATACCTAATGGATTCAACAAGTTTACTCATTTGCAAAATCTTGATTTGTCTTCTAACAAACTTGTTGGTCCAATGCCTGCTTTTCTGTTTTCACTTCCAGCAATTCAGTCTATTAGTATTGCTAAGAATCAGCTTAGTGGTGCTCTTCCAGGAAGTGTGTCTTGTAGCAACAATCTAAAATTTGTCGATTTTTCGAGTAATTTATTGATTGGAAAGTTGCCTACTTGTCTTGGATCAAGTTCAAGAAACAGGACAGTGATTAATGTTTGGAATTGTTTGTCAAGTACTAGTACTAAGTCTCAACATCCACATACATTTTGTGAGAAACAAGCTATAGCTGTTAAGCCCCCTCCAAGAACTAGTGGTGAAAAGGAACAATCCACAGTTAAGCTTGGTGTTGTTTTAGGACTTATTGCTGGTATTGTTGTAGTTGTGGGTGCATTTGGTTTGCTGATCTTTTTCATTGTGAAGAAGGTTATGAGAAATAGAGTTGAAAGTTATAGAAATGACAGCTTTGCTTTTGAGAAGAATTCAACCCTTTCAAAAACTACTGATGGAG : GGAAGGCAAGGAGGACAATGAGAATGGTATCATTAGGACTTCCACCATATCATGTTTTCACTTTAGAGGAAATGGAAGAAGCAACAAACAGTTTTGATCCAACTAATCTGGTTGGAGAAGGTTCCCAGGGTCAG : CTATATAGAGGTTGGCTTAGAGATGGATCAGTGGTCCTAGTAAAATGTCTGAAATTGAAGCAGAAGCATTCACCTCAAATTCTGCAGCAGCACATGGAGATGATATCAAAGCTAAGGCATCGACATTTAGTCAGTGTTCTTGGACACTGTGTTGTTACTTACCAAGATCATCCAAATACAGCTAGCACTGTATTTATTGTGCTTGAAAACGTCGTCAATGGATCTCT</gDNA_template>
            <first_frame> L  T  L  L  *  I  L  E  L  Y  H  S  S  T  S  Q  K  N  F  K  K  S  A  H  S  F  V  S  S  K  D  C  F  F  W  G  F  *  V  F  *  L  *  R  V  C  C  F  L  V  C  F  C  F  F  K  F  H  F  H  H  L  S  *  F  L  Q  K  V  E  S  F  F  K  F  N  S  F  L  K  I  H  L  F  F  N  N  G  I  N  G  Q  I  F  V  L  S  H  N  L  L  L  L  L  S  L  V  L  V  I  I  *  L  S  *  Q  L  L  V  T  K  N  P  L  L  S  L  *  N  P  H  L  H  K  P  F  L  G  N  F  Q  L  I  H  F  S  L  L  L  L  S  F  L  V  *  K  S  Y  L  *  C  L  L  V  C  G  V  H  C  L  L  R  L  V  G  Y  I  H  L  R  Y  L  I  L  V  Q  I  S  F  L  V  R  F  H  H  L  *  *  I  *  R  T  *  N  L  L  F  *  L  E  I  C  L  M  E  V  Y  Q  I  *  K  G  *  S  Y  L  K  S  W  I  *  V  V  I  I  *  D  Q  S  F  H  L  *  V  I  T  I  T  I  I  L  S  H  *  I  *  V  T  I  S  L  D  Q  K  Y  L  M  D  S  T  S  L  L  I  C  K  I  L  I  C  L  L  T  N  L  L  V  Q  C  L  L  F  C  F  H  F  Q  Q  F  S  L  L  V  L  L  R  I  S  L  V  V  L  F  Q  E  V  C  L  V  A  T  I  *  N  L  S  I  F  R  V  I  Y  *  L  E  S  C  L  L  V  L  D  Q  V  Q  E  T  G  Q  *  L  M  F  G  I  V  C  Q  V  L  V  L  S  L  N  I  H  I  H  F  V  R  N  K  L  *  L  L  S  P  L  Q  E  L  V  V  K  R  N  N  P  Q  L  S  L  V  L  F  *  D  L  L  L  V  L  L  *  L  W  V  H  L  V  C  *  S  F  S  L  *  R  R  L  *  E  I  E  L  K  V  I  E  M  T  A  L  L  L  R  R  I  Q  P  F  Q  K  L  L  M  E  :  G  R  Q  G  G  Q  *  E  W  Y  H  *  D  F  H  H  I  M  F  S  L  *  R  K  W  K  K  Q  Q  T  V  L  I  Q  L  I  W  L  E  K  V  P  R  V  S :   Y  I  E  V  G  L  E  M  D  Q  W  S  *  *  N  V  *  N  *  S  R  S  I  H  L  K  F  C  S  S  T  W  R  *  Y  Q  S  *  G  I  D  I  *  S  V  F  L  D  T  V  L  L  L  T  K  I  I  Q  I  Q  L  A  L  Y  L  L  C  L  K  T  S  S  M  D  L  </first_frame>
            <second_frame>  S  L  Y  Y  R  F  L  N  Y  I  I  L  Q  L  H  K  K  I  L  K  K  V  L  T  L  L  *  A  Q  K  I  V  F  F  G  D  F  E  S  F  S  Y  E  G  C  V  V  S  W  F  V  F  V  F  S  S  S  I  F  I  I  S  V  S  S  C  R  K  *  N  P  F  S  N  S  T  V  S  *  K  S  T  C  S  S  T  M  E  *  M  D  K  F  L  F  Y  P  T  I  S  F  S  C  Y  H  L  F  W  *  S  Y  N  *  V  N  N  C  W  *  Q  K  I  P  F  *  V  F  K  I  L  I  S  T  S  P  F  W  E  I  F  N  *  F  I  F  H  C  C  Y  *  A  F  *  F  K  K  A  I  F  S  V  S  W  F  V  G  F  I  A  C  *  D  *  *  V  T  F  T  *  G  T  *  Y  *  F  K  F  H  S  W  *  D  S  I  I  Y  S  E  F  K  E  P  E  I  S  C  F  S  *  K  F  V  *  W  K  C  T  R  S  E  R  V  K  V  T  *  R  V  G  F  E  W  *  *  F  R  T  K  V  S  I  F  R  *  L  Q  *  Q  *  S  C  L  I  E  F  E  *  Q  F  L  *  I  R  N  T  *  W  I  Q  Q  V  Y  S  F  A  K  S  *  F  V  F  *  Q  T  C  W  S  N  A  C  F  S  V  F  T  S  S  N  S  V  Y  *  Y  C  *  E  S  A  *  W  C  S  S  R  K  C  V  L  *  Q  Q  S  K  I  C  R  F  F  E  *  F  I  D  W  K  V  A  Y  L  S  W  I  K  F  K  K  Q  D  S  D  *  C  L  E  L  F  V  K  Y  *  Y  *  V  S  T  S  T  Y  I  L  *  E  T  S  Y  S  C  *  A  P  S  K  N  *  W  *  K  G  T  I  H  S  *  A  W  C  C  F  R  T  Y  C  W  Y  C  C  S  C  G  C  I  W  F  A  D  L  F  H  C  E  E  G  Y  E  K  *  S  *  K  L  *  K  *  Q  L  C  F  *  E  E  F  N  P  F  K  N  Y  *  W  R :   E  G  K  E  D  N  E  N  G  I  I  R  T  S  T  I  S  C  F  H  F  R  G  N  G  R  S  N  K  Q  F  *  S  N  *  S  G  W  R  R  F  P  G  S   : A  I  *  R  L  A  *  R  W  I  S  G  P  S  K  M  S  E  I  E  A  E  A  F  T  S  N  S  A  A  A  H  G  D  D  I  K  A  K  A  S  T  F  S  Q  C  S  W  T  L  C  C  Y  L  P  R  S  S  K  Y  S  *  H  C  I  Y  C  A  *  K  R  R  Q  W  I  S </second_frame>
            <third_frame>   H  S  I  I  D  S  *  I  I  S  F  F  N  F  T  K  K  F  *  K  K  C  S  L  F  C  E  L  K  R  L  F  F  L  G  I  L  S  L  L  A  M  K  G  V  L  F  L  G  L  F  L  F  F  Q  V  P  F  S  S  S  Q  L  V  P  A  E  S  R  I  L  F  Q  I  Q  Q  F  L  E  N  P  P  V  L  Q  Q  W  N  K  W  T  N  F  C  F  I  P  Q  S  P  S  L  V  I  T  C  S  G  N  H  I  T  E  L  T  I  V  G  N  K  K  S  P  F  E  S  L  K  S  S  S  P  Q  A  L  S  G  K  F  S  I  D  S  F  F  T  V  V  T  K  L  S  S  L  K  K  L  S  L  V  S  L  G  L  W  G  S  L  P  A  K  I  S  R  L  H  S  L  E  V  L  N  I  S  S  N  F  I  L  G  E  I  P  S  S  I  V  N  L  K  N  L  K  S  L  V  L  A  R  N  L  F  N  G  S  V  P  D  L  K  G  L  K  L  L  E  E  L  D  L  S  G  N  N  L  G  P  K  F  P  S  L  G  D  Y  N  N  N  N  L  V  S  L  N  L  S  N  N  F  F  R  S  E  I  P  N  G  F  N  K  F  T  H  L  Q  N  L  D  L  S  S  N  K  L  V  G  P  M  P  A  F  L  F  S  L  P  A  I  Q  S  I  S  I  A  K  N  Q  L  S  G  A  L  P  G  S  V  S  C  S  N  N  L  K  F  V  D  F  S  S  N  L  L  I  G  K  L  P  T  C  L  G  S  S  S  R  N  R  T  V  I  N  V  W  N  C  L  S  S  T  S  T  K  S  Q  H  P  H  T  F  C  E  K  Q  A  I  A  V  K  P  P  P  R  T  S  G  E  K  E  Q  S  T  V  K  L  G  V  V  L  G  L  I  A  G  I  V  V  V  V  G  A  F  G  L  L  I  F  F  I  V  K  K  V  M  R  N  R  V  E  S  Y  R  N  D  S  F  A  F  E  K  N  S  T  L  S  K  T  T  D  G   : G  K  A  R  R  T  M  R  M  V  S  L  G  L  P  P  Y  H  V  F  T  L  E  E  M  E  E  A  T  N  S  F  D  P  T  N  L  V  G  E  G  S  Q  G  Q  :  L  Y  R  G  W  L  R  D  G  S  V  V  L  V  K  C  L  K  L  K  Q  K  H  S  P  Q  I  L  Q  Q  H  M  E  M  I  S  K  L  R  H  R  H  L  V  S  V  L  G  H  C  V  V  T  Y  Q  D  H  P  N  T  A  S  T  V  F  I  V  L  E  N  V  V  N  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64176" stop="62886"/>
                    <exon start="62597" stop="62464"/>
                    <exon start="62155" stop="61931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKCSLFCELKRLFFLGILSLLAMKGVLFLGLFLFFQVPFSSSQLVPAESRILFQIQQFLENPPVLQQWNKWTNFCFIPQSPSLVITCSGNHITELTIVGNKKSPFESLKSSSPQALSGKFSIDSFFTVVTKLSSLKKLSLVSLGLWGSLPAKISRLHSLEVLNISSNFILGEIPSSIVNLKNLKSLVLARNLFNGSVPDLKGLKLLEELDLSGNNLGPKFPSLGDYNNNNLVSLNLSNNFFRSEIPNGFNKFTHLQNLDLSSNKLVGPMPAFLFSLPAIQSISIAKNQLSGALPGSVSCSNNLKFVDFSSNLLIGKLPTCLGSSSRNRTVINVWNCLSSTSTKSQHPHTFCEKQAIAVKPPPRTSGEKEQSTVKLGVVLGLIAGIVVVVGAFGLLIFFIVKKVMRNRVESYRNDSFAFEKNSTLSKTTDGGKARRTMRMVSLGLPPYHVFTLEEMEEATNSFDPTNLVGEGSQGQLYRGWLRDGSVVLVKCLKLKQKHSPQILQQHMEMISKLRHRHLVSVLGHCVVTYQDHPNTASTVFIVLENVVNGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="70728" PGL_stop="75355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70728" e_stop="70806"/>
            <exon e_start="70979" e_stop="71024"/>
            <exon e_start="72130" e_stop="72237"/>
            <exon e_start="72898" e_stop="73179"/>
            <exon e_start="74136" e_stop="74336"/>
            <exon e_start="74842" e_stop="74922"/>
            <exon e_start="75247" e_stop="75355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70728" e_stop="70806" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="70807" i_stop="70978" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70979" e_stop="71024" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.877">
            <gDNA_intron_boundary i_start="71025" i_stop="72129" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72130" e_stop="72237" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.932">
            <gDNA_intron_boundary i_start="72238" i_stop="72897" i_length="660"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72898" e_stop="73179" e_length="282"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.758">
            <gDNA_intron_boundary i_start="73180" i_stop="74135" i_length="956"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74136" e_stop="74336" e_length="201"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74337" i_stop="74841" i_length="505"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74842" e_stop="74922" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="74923" i_stop="75246" i_length="324"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75247" e_stop="75355" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70728" stop="70806"/>
              <exon start="70979" stop="71024"/>
              <exon start="72130" stop="72237"/>
              <exon start="72898" stop="73179"/>
              <exon start="74136" stop="74336"/>
              <exon start="74842" stop="74922"/>
              <exon start="75247" stop="75292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70730" stop="70806"/>
              <exon start="70979" stop="71024"/>
              <exon start="72130" stop="72237"/>
              <exon start="72898" stop="73179"/>
              <exon start="74136" stop="74336"/>
              <exon start="74842" stop="74922"/>
              <exon start="75247" stop="75355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70771" stop="70806"/>
              <exon start="70979" stop="71024"/>
              <exon start="72130" stop="72237"/>
              <exon start="72898" stop="73179"/>
              <exon start="74136" stop="74336"/>
              <exon start="74842" stop="74863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70792" stop="70806"/>
              <exon start="70979" stop="71024"/>
              <exon start="72130" stop="72237"/>
              <exon start="72898" stop="73179"/>
              <exon start="74136" stop="74336"/>
              <exon start="74842" stop="74922"/>
              <exon start="75247" stop="75296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAAACTTTACCCTGCTTGTTGTTGAGTGCCGTTTGTCTCTTTACTCTCTTCTTCTTGAAGATGAGCAAAGAAATG : TTAAACAAGGGTTTTTGTTAAAGTTACAATCTTTGCTCTGTTTGAG : GTTCTTACGTTGTGGGCAATCAAACTTATTACTATGGGAAAATCTCCTGGAAAGTGGCTCAGGTCATTGTTGCCAGGGAAAAAGTCTTCCAAATCTGGCACATCAAAG : AAATCTTCAAATGAGAAAGCATCTGTAATTTCCACCAATGCGGCATTGTCCGGTTCGTCTGTCCATCTGCCATTGATATCTGAACCAGTTGCTTGTAATGCTGGTGGAATAAAAGAAGACTCGAACTTTGAGAAAGGAGGGGTCACTAATGAGGTGATTCTCCCTTCTATCGAGCGAGATGGAGACGAACAGAATACTTGTCTTACCTTACCTGAGGATACTGAGAAAATGAGGCTTGAGCAAGCAGCTACAAAGGCACAAGCTATTGTTAGGGGTTATCTG : GCTCGCCGAGCATTTCTTAGGCTCAAGGGGACCATAAGGCTACAAGCTGCAGTACGTGGCCATCTGGTCAGAAGGCAGGCTGTTGCTACATTATACTGTATACATGGCATTGTCAAACTTCAAGCAAATATCCGTGGCCAGATTGCTAGACGTTCCAGTATTGGCTGTGAACTAATAACCAAACAAGGACTTGAAAAACAG : GATGCCAAACAATTGGATTATCAGAGAGCTAATGCATCCAAACTAGCACGGGAGCTATCCACTAACGGATTCACTACAAAG : CTACTTGCTTCATTACCTACTGGAATGCCTCTACACCTCCATTATGGTCAAGAGGAGCCAAATTCTAGTCAGGAATGGCTTGTCCGTTGGACTATATCACAGATTTGGC</gDNA_template>
            <first_frame> K  T  N  F  T  L  L  V  V  E  C  R  L  S  L  Y  S  L  L  L  E  D  E  Q  R  N   : V  K  Q  G  F  L  L  K  L  Q  S  L  L  C  L  R :   F  L  R  C  G  Q  S  N  L  L  L  W  E  N  L  L  E  S  G  S  G  H  C  C  Q  G  K  S  L  P  N  L  A  H  Q  R :   N  L  Q  M  R  K  H  L  *  F  P  P  M  R  H  C  P  V  R  L  S  I  C  H  *  Y  L  N  Q  L  L  V  M  L  V  E  *  K  K  T  R  T  L  R  K  E  G  S  L  M  R  *  F  S  L  L  S  S  E  M  E  T  N  R  I  L  V  L  P  Y  L  R  I  L  R  K  *  G  L  S  K  Q  L  Q  R  H  K  L  L  L  G  V  I  W :   L  A  E  H  F  L  G  S  R  G  P  *  G  Y  K  L  Q  Y  V  A  I  W  S  E  G  R  L  L  L  H  Y  T  V  Y  M  A  L  S  N  F  K  Q  I  S  V  A  R  L  L  D  V  P  V  L  A  V  N  *  *  P  N  K  D  L  K  N  R :   M  P  N  N  W  I  I  R  E  L  M  H  P  N  *  H  G  S  Y  P  L  T  D  S  L  Q  S :   Y  L  L  H  Y  L  L  E  C  L  Y  T  S  I  M  V  K  R  S  Q  I  L  V  R  N  G  L  S  V  G  L  Y  H  R  F  G </first_frame>
            <second_frame>  K  Q  T  L  P  C  L  L  L  S  A  V  C  L  F  T  L  F  F  L  K  M  S  K  E  M  :  L  N  K  G  F  C  *  S  Y  N  L  C  S  V  *   : G  S  Y  V  V  G  N  Q  T  Y  Y  Y  G  K  I  S  W  K  V  A  Q  V  I  V  A  R  E  K  V  F  Q  I  W  H  I  K   : E  I  F  K  *  E  S  I  C  N  F  H  Q  C  G  I  V  R  F  V  C  P  S  A  I  D  I  *  T  S  C  L  *  C  W  W  N  K  R  R  L  E  L  *  E  R  R  G  H  *  *  G  D  S  P  F  Y  R  A  R  W  R  R  T  E  Y  L  S  Y  L  T  *  G  Y  *  E  N  E  A  *  A  S  S  Y  K  G  T  S  Y  C  *  G  L  S   : G  S  P  S  I  S  *  A  Q  G  D  H  K  A  T  S  C  S  T  W  P  S  G  Q  K  A  G  C  C  Y  I  I  L  Y  T  W  H  C  Q  T  S  S  K  Y  P  W  P  D  C  *  T  F  Q  Y  W  L  *  T  N  N  Q  T  R  T  *  K  T   : G  C  Q  T  I  G  L  S  E  S  *  C  I  Q  T  S  T  G  A  I  H  *  R  I  H  Y  K   : A  T  C  F  I  T  Y  W  N  A  S  T  P  P  L  W  S  R  G  A  K  F  *  S  G  M  A  C  P  L  D  Y  I  T  D  L   </second_frame>
            <third_frame>   N  K  L  Y  P  A  C  C  *  V  P  F  V  S  L  L  S  S  S  *  R  *  A  K  K  C :   *  T  R  V  F  V  K  V  T  I  F  A  L  F  E  :  V  L  T  L  W  A  I  K  L  I  T  M  G  K  S  P  G  K  W  L  R  S  L  L  P  G  K  K  S  S  K  S  G  T  S  K  :  K  S  S  N  E  K  A  S  V  I  S  T  N  A  A  L  S  G  S  S  V  H  L  P  L  I  S  E  P  V  A  C  N  A  G  G  I  K  E  D  S  N  F  E  K  G  G  V  T  N  E  V  I  L  P  S  I  E  R  D  G  D  E  Q  N  T  C  L  T  L  P  E  D  T  E  K  M  R  L  E  Q  A  A  T  K  A  Q  A  I  V  R  G  Y  L  :  A  R  R  A  F  L  R  L  K  G  T  I  R  L  Q  A  A  V  R  G  H  L  V  R  R  Q  A  V  A  T  L  Y  C  I  H  G  I  V  K  L  Q  A  N  I  R  G  Q  I  A  R  R  S  S  I  G  C  E  L  I  T  K  Q  G  L  E  K  Q  :  D  A  K  Q  L  D  Y  Q  R  A  N  A  S  K  L  A  R  E  L  S  T  N  G  F  T  T  K  :  L  L  A  S  L  P  T  G  M  P  L  H  L  H  Y  G  Q  E  E  P  N  S  S  Q  E  W  L  V  R  W  T  I  S  Q  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70983" stop="71024"/>
                    <exon start="72130" stop="72237"/>
                    <exon start="72898" stop="73179"/>
                    <exon start="74136" stop="74336"/>
                    <exon start="74842" stop="74922"/>
                    <exon start="75247" stop="75354"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRVFVKVTIFALFEVLTLWAIKLITMGKSPGKWLRSLLPGKKSSKSGTSKKSSNEKASVISTNAALSGSSVHLPLISEPVACNAGGIKEDSNFEKGGVTNEVILPSIERDGDEQNTCLTLPEDTEKMRLEQAATKAQAIVRGYLARRAFLRLKGTIRLQAAVRGHLVRRQAVATLYCIHGIVKLQANIRGQIARRSSIGCELITKQGLEKQDAKQLDYQRANASKLARELSTNGFTTKLLASLPTGMPLHLHYGQEEPNSSQEWLVRWTISQIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="75381" PGL_stop="76231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75381" e_stop="76231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75381" e_stop="76231" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75381" stop="76063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75381" stop="75872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75456" stop="76231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGGGAAAAAAACATCAAAATGCTGAAGCAGACATTGCTATGTCAAAGCACAGTGTAAGGAAAGTACATTCTAAAAAAATGCAGAACGGTTCAAATCATTCCACTTCTTCGGGGTCAGAAAAGAAGAAATCAAGTCATTTGGTAAACTCTGTTCTTCAGAATCCAGGAAGTGAGATTAAGAAGGTAAAACATAGTTTAAAGAAAACGTCCAGCCCTATATTGGAAAAACCAGTTCAGTCTGAGGTTGACACTGAGCGAAAAAGGCAAAGTCATGACAAATCATCAAGCATGGCATCTGATGAACCATTGAAAAATTCAGAAGGGACAGTTGAAAATTCTACTAATGTGGCCCCACCTCCCGTAGTGGTGGACGATACTATCACTCATTTGGATATCCTTTCTGTATCTGATACTCATCACAAATCGACTACTGATGCTGCGGATCAGAAATCGATCACTGATAACAGAGAGGATGATACTCCTGTCGCGAATGAGGATTTTTGTACTAACCATGATAATAATGAAGGAAGTGAGAGCAACAAGGTTAACAGAAGAGTTTCTTTACCTGCAAAGCATGATGTCGATGCAAGTACACCCACAACAAGAAAGGTGCCCAGCTACATGGCTCCAACCAAGTCTGCTAAAGCTAAGCTGAAGGAGCAAGCCTCACCAAGGTTTGGGCAAGATGTGGCTGAGAAGAATGCCGTAACCAGACGTCATTCTTTACCGTCCCCTATGAATGGAAAGCTGAGTTCATCACCATCACCACGGGTGCAGAGGCTGGTCCAAGCTAGTGCTAAAGAAGGAATCAAGATCGACAGATCTTTATCGTCTTCAAGGGATGGTACTG</gDNA_template>
            <first_frame> S  G  K  K  T  S  K  C  *  S  R  H  C  Y  V  K  A  Q  C  K  E  S  T  F  *  K  N  A  E  R  F  K  S  F  H  F  F  G  V  R  K  E  E  I  K  S  F  G  K  L  C  S  S  E  S  R  K  *  D  *  E  G  K  T  *  F  K  E  N  V  Q  P  Y  I  G  K  T  S  S  V  *  G  *  H  *  A  K  K  A  K  S  *  Q  I  I  K  H  G  I  *  *  T  I  E  K  F  R  R  D  S  *  K  F  Y  *  C  G  P  T  S  R  S  G  G  R  Y  Y  H  S  F  G  Y  P  F  C  I  *  Y  S  S  Q  I  D  Y  *  C  C  G  S  E  I  D  H  *  *  Q  R  G  *  Y  S  C  R  E  *  G  F  L  Y  *  P  *  *  *  *  R  K  *  E  Q  Q  G  *  Q  K  S  F  F  T  C  K  A  *  C  R  C  K  Y  T  H  N  K  K  G  A  Q  L  H  G  S  N  Q  V  C  *  S  *  A  E  G  A  S  L  T  K  V  W  A  R  C  G  *  E  E  C  R  N  Q  T  S  F  F  T  V  P  Y  E  W  K  A  E  F  I  T  I  T  T  G  A  E  A  G  P  S  *  C  *  R  R  N  Q  D  R  Q  I  F  I  V  F  K  G  W  Y   </first_frame>
            <second_frame>  P  G  K  K  H  Q  N  A  E  A  D  I  A  M  S  K  H  S  V  R  K  V  H  S  K  K  M  Q  N  G  S  N  H  S  T  S  S  G  S  E  K  K  K  S  S  H  L  V  N  S  V  L  Q  N  P  G  S  E  I  K  K  V  K  H  S  L  K  K  T  S  S  P  I  L  E  K  P  V  Q  S  E  V  D  T  E  R  K  R  Q  S  H  D  K  S  S  S  M  A  S  D  E  P  L  K  N  S  E  G  T  V  E  N  S  T  N  V  A  P  P  P  V  V  V  D  D  T  I  T  H  L  D  I  L  S  V  S  D  T  H  H  K  S  T  T  D  A  A  D  Q  K  S  I  T  D  N  R  E  D  D  T  P  V  A  N  E  D  F  C  T  N  H  D  N  N  E  G  S  E  S  N  K  V  N  R  R  V  S  L  P  A  K  H  D  V  D  A  S  T  P  T  T  R  K  V  P  S  Y  M  A  P  T  K  S  A  K  A  K  L  K  E  Q  A  S  P  R  F  G  Q  D  V  A  E  K  N  A  V  T  R  R  H  S  L  P  S  P  M  N  G  K  L  S  S  S  P  S  P  R  V  Q  R  L  V  Q  A  S  A  K  E  G  I  K  I  D  R  S  L  S  S  S  R  D  G  T  </second_frame>
            <third_frame>   R  E  K  N  I  K  M  L  K  Q  T  L  L  C  Q  S  T  V  *  G  K  Y  I  L  K  K  C  R  T  V  Q  I  I  P  L  L  R  G  Q  K  R  R  N  Q  V  I  W  *  T  L  F  F  R  I  Q  E  V  R  L  R  R  *  N  I  V  *  R  K  R  P  A  L  Y  W  K  N  Q  F  S  L  R  L  T  L  S  E  K  G  K  V  M  T  N  H  Q  A  W  H  L  M  N  H  *  K  I  Q  K  G  Q  L  K  I  L  L  M  W  P  H  L  P  *  W  W  T  I  L  S  L  I  W  I  S  F  L  Y  L  I  L  I  T  N  R  L  L  M  L  R  I  R  N  R  S  L  I  T  E  R  M  I  L  L  S  R  M  R  I  F  V  L  T  M  I  I  M  K  E  V  R  A  T  R  L  T  E  E  F  L  Y  L  Q  S  M  M  S  M  Q  V  H  P  Q  Q  E  R  C  P  A  T  W  L  Q  P  S  L  L  K  L  S  *  R  S  K  P  H  Q  G  L  G  K  M  W  L  R  R  M  P  *  P  D  V  I  L  Y  R  P  L  *  M  E  S  *  V  H  H  H  H  H  G  C  R  G  W  S  K  L  V  L  K  K  E  S  R  S  T  D  L  Y  R  L  Q  G  M  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75382" stop="76230"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKKHQNAEADIAMSKHSVRKVHSKKMQNGSNHSTSSGSEKKKSSHLVNSVLQNPGSEIKKVKHSLKKTSSPILEKPVQSEVDTERKRQSHDKSSSMASDEPLKNSEGTVENSTNVAPPPVVVDDTITHLDILSVSDTHHKSTTDAADQKSITDNREDDTPVANEDFCTNHDNNEGSESNKVNRRVSLPAKHDVDASTPTTRKVPSYMAPTKSAKAKLKEQASPRFGQDVAEKNAVTRRHSLPSPMNGKLSSSPSPRVQRLVQASAKEGIKIDRSLSSSRDGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="97266" PGL_stop="97914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97266" e_stop="97914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="97266" e_stop="97914" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97266" stop="97914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97267" stop="97651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATAGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTACCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCTAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  S  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  Y  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  *  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  I  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  T  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  *  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  L  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97267" stop="97914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDIVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFTAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="97925" PGL_stop="98732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97925" e_stop="98732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="97925" e_stop="98732" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97925" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCCTATGCCAGTGCCGTAGGAAGTTTAATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  P  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  N  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97927" stop="98730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 163 chains have been computed
$ 
$ memory statistics:
$ 475440 bytes spliced alignments in total
$ 140 spliced alignments have been stored
$ 3396 bytes was the average size of a spliced alignment
$ 30928 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1627 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 177 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:54:40
-->
