<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:59:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6531" ref_strand="+" ref_description="SGN-M6531 C2_At1g07040 [cosii_markers]">
      <seq>agcattggtcccgataaacccatgaaaaaaaatacattcttcttctcagttgataaagcccaattaaggaacaataaacaaccaaaaaagatgtcatcaatgatcaaattaccatcttgcatgttaagtgtcaattcatcttctttttcaatcaaatcatcaatttttccaaaatccatctctttctcctctagccatattaataatttcaagaacccttttttgaactctaaaactccaatggaaaatcagagtttttcaatgttatctgcttctaaacctcaaaatggagctgtaattcaagattcttcttttcagggaagtgaatcattcttcaggagtgtgttggggaacatggaagccatatatctgaataaaaaccccactgctaaggctattttggagctcgttcgttctgctgatgatgatcaaatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttagattttggttacgaacgacgagaggagctgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtatcaacttccagtcgtgggagtggggttcacgggccattgccaagaatatttatatccgaacttcttgttgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaatatttcgcactgtggaaaagaatatgctgcacttgcaagtgcatttgggattttgacatgggaaaaaccctcgtattcggaatttcaactactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcattggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggttttctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctttttcgaattttcagacggcattacagaagcagtaccttgttcatacattgaatttgctgagagacttgtactaccgcaatataaagatttaccagcagaaaaggtggaggagtttcacaggcgggacgggtttgaagttggaaatgccgacaagatatttgagagtacatccaaggatcagttaactcgtcgtgctgcatgaaagtaagcgcgaagcagttggatgtttcgactctgtggagctaattcttggcatgttcagctggatgactactccaagattaaactgttgttgaaagaagatgatattgtagctctgaaagtattattatctgtaactatcacaaatttactcttggcatatacacctgatatatcaataaattagtttggatgataaagtagataaaaaaaataattaaacaccaatattgatgtagtcagtgcaaaaataaacttgtcaatgctatccatcttatgatttctctcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="26804" stop="21678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26187" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25338" g_stop="25189" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="468" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="684" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="806" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="970" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1125" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22371" g_stop="21977" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1126" r_stop="1520" r_length="395" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-M6531" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26187"/>
          <exon e_start="25338" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="21977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAGGTGAATTTCATCAAACCCCTTGAGTATAATCATTGATTAGTTGTTGTTAATCATGCTGTAATCTCATTACTATGTAGGATTTTTTTGTATGTGGTGTATTTGGCTCATTTCTTTGTGATTAAAAAGGTTTTTTTTTTTTGTATAGTAGTTGTTAAAAAGGAACAATCTTTTTTTTTATTTTAGCCTTTTAGGTTTGTAATAAGTTTTTGTTTTTAACTTTTGCTCTCTTGGTGACTATATATAAGTGTTAGGAGGTGGAGGGTACTTACCATCCGAGCGATCTTTGTGGTTTTTAGGTCTGTAATATGTTGCTTAATTGAGGATCTAATTGTTTTTGTGGGCCAAGACTTGGTAAATATTTATATTGATTAATGGTTGTAGGGGTCAATACAACAACATACTCGATGTAGTGCCACGAGTAGGGTCTAGGGAGGGTAGTGTTTAAGCATAGCTTACCCTTATTTTGGGAGGTAGTGAGGTATAGACCCTCGAGCTCAAGTGAAATGTTTATATGGCACAATGAAAGGAAAAGGAATGATATACTTGTTGAGAATAGGTTTTGGATTCGTTAGAGGAACTTGTAATGTTATTATTATGATGATTATATGAAATGAGCTTAAGTGAAGAAGTGGGAACTGAAATAGCTGACCCTGAATTGTTTGGAGCTGAGGTGTAATTGTTGTCGTTGTGTCCTGGTTGTAAGACCGGAATATCAGTTTGCTCCAACACCATTTTGAATGAATTAGTTATTTTGAGCTTGCAACACTACTTTCATCTTCTAATGGGATTTTGATTTTTCTTTTTTGAGTGGTGTTGATTGACTAATTTTTTTGGATTTGAGTATTCAGGGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</genome_strand>
        <mrna_strand>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAAAAAAAATAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6531-2" ref_strand="+" ref_description="SGN-M6531-2 C2_At1g07040-2 [cosii_markers]">
      <seq>ccccgggctgcaggattttccgcacgaggcttgttcgttctgctgacggtgatcagatttgctatgatcattttgcatttaggacatttggggtaaatggtcatggcattgattctatgtcaaagttcttcttggattttggttacgaacgacgagaagagttgagattccctgctaagaagttgaaagctttctggttttctcctccgaaggtttcaacttccagtcgtgggagtggggttaacgggccattgccaagaatatttatatccgaacttcttgtcgatcagcttagtccagaagctcaggaaataatcaaaaagtacactaacatttcgcactgcggaaaagagtatgctgcacttgcaagtgcattcgggattttgacatgggaaaaaccctcgtattcggaatttcaacaactggctagggagagtgagtatgctgcctggacacttgtcaatggatatgcattgaatcatgttaccatatctacccatcggttggcatcaaatctgagaagcatcggaaatctaaatcaatttatcgaagaaaatggtttcaatttgaactctgaagggggtattctaaaggtgagccctgatggtcttttgctgcaaagttcaactgtagcagattctacctctttcgaattttcagatggcactacagaagcagtaccttgttcatacattgaatttgctgagcgacttgtactaccgcaatataaagatttacccacagaaaaggtggaggagtttcataggcgggacggatttgaagttggaaatgctgacaagatatttgagagtacatccaaggatcagttaacccgtcgtgcagcatgagagcagttggacgtttcgactgtgtgaaggtaatttcttggcatattcaactggatgactactccaagattaactgttggaagaagatgatattgtagtattattatccgtaactatcacaaatttcctcttggcatataccacctgatatgtcaagaaattagtttggatgataagtagatagatgaaataattaaacaccaatattgatgtagtcagagcaaaaataaagttgtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="25554" stop="21709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25251" g_stop="25189" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="92" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106">
            <donor d_prob="0.813" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25082" g_stop="24867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="308" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24308" g_stop="24187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="430" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259">
            <donor d_prob="0.714" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23927" g_stop="23764" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="594" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23036" g_stop="22882" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="749" r_length="155" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22371" g_stop="22009" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="1089" r_length="340" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-M6531-2" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>1083</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6531-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25251" e_stop="25189"/>
          <exon e_start="25082" e_stop="24867"/>
          <exon e_start="24308" e_stop="24187"/>
          <exon e_start="23927" e_stop="23764"/>
          <exon e_start="23036" e_stop="22882"/>
          <exon e_start="22371" e_stop="22009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGGGTACGATTGTTCTTCTTTAATGCAAAATTTGAGATGGAGATGTGGAAAAACTTGTTTATGTGAGCATACTAATAACTACATTTCTTTGTGGTGCTGATCACTGCAGGTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAGGTTTTTCATTAGCTAGTTGCTTTACATAGCTTTTTGTATGCTTTTTAACAGAACAATTTCTGGTCTAATGGATGAATTTCACATTTCAAAAGTTCGGTTCTTTTTTTGTATGATATTTTCCAACAATTTATACCCCTTTTGCTTTCAAGTGTAGATTTATTTAGATATTGGACATTAATTAGATATATTAGAATTAAAATAAGACCAAGAAAGGGAGTATAGTTCAAAATGTTTTGTAATTGTACTGATTGTAGTAGTCCTGATATCGTTGGGAGGCACCTTGATGATATCTTTTGCAGTGGAGGTATTGCTTTTACTTGGTACCTGGTTTACTTCAACTGTTCTTGAATATTTTCTGAATTCAAGATTGATGTATATGACATAGTGTGACATTTCAGACCTTTCAGTTCTTCAAAGTCGCAACCTCGCAGAAGTAGAGAAAGAAATTTCATGTTTATCCTGGCTAACTTCTATTTTTCTCTAGTGAAGGTCACTTCTAAATAATCTCATAGATGGTCAGCTTTTTATTTACACGGAACTTCATTTTTTTTCTTGTAGGAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAGGTACTGGGCATTGTCCACCATGTTTTAATTTCATGACGTATTTTATATGCCCCGTGCTAGCTCATGGATCAAGTTGAATAGTGACGTTTCAATAGATTGTAGCTTACTGGTGTCATTTAGAGAGTGGGAATGATATTAATACATCTCTAGCAGAATTCATACTTTTTTACAACCAACTGAACTAGTTTAACACTAATTATCATCAACAGCATTGTCAATTTAATTATTGTTATTCTGTTGTGATTGTTGAAATTATCAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGGGTTAGTATAAAGTAATTTTATGTATTACTCCTCTTTCCTTTTTTTTTGGCCAACTCTTTAATTTTAACTTCTCATTTGATATGTTTGATCACAAAGATTAAAAGATATTTTAGAACATTGTATAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTTAACTCCGTTTACTTAATCTGTTCTCATTAAGTTCAGTGTTTACCCCAGCAACCGTTCTGAAACCAAAATCTTGTGAGCTCTTTTTATTAATACCTGTTAGTTCAGCTGAAGTAAAAGGTCTTTGCCTGCCTGCAACTCCCAACTTACTGATTTTCTTCTTCCCAATATGCGCACCTGACTAAGTGTAAATTAGTACGTAGTAGTAGGAAGATTACAACTCTCGCTTTAGTAAAACATTACGCTATGATCTTCAAATTTTCTTGGTAACTAGACTAAGATGTTAGTTGATAAGGGATGTATCTTGGTGTATCTGTTTGGTACTTCAACGAAGGAAATCCAGGTTGAAGAGCTTTTTGGTGCTGTGTTCTGTTTTACTTTTTTTTGCCTCAGAAAGTTATTGCTCATTATATTTTTGAATATTTGGAACATGTATTGACGACATATAATTCATTTTCGTCATAGGGAACCCGTTGATTTTGAAATCTCGTTTCTTTTAAGCGACAACTGTTCTTTTAAAATGGTCTCCTGATATTGCAAAGAAGTCTTGATTTATTCTCTTTCTTTCCAGTGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAGGTCAGTTCCAGTTATCCCTCAATTTTCTTGCATATTTATCTGCAGTAAAAGCAATAAATCGATAACATGGACTTGGTTCGTCCAACACCTGTTCATAACCATAGACGAGAATAATCGCCGTGTCATGTACCCTTTATGGTTGTTCAAATACTTGTATGGCAATGTAATTGAATAAAATCTACCTACTCTTAAGCTTTAAAATGGAAAACATTTGTCTGCTGAGTTGAAAAACTAAAAAAGATATCATGTGTTGTGATTGGATTCGAACACGTGCTTATTGTAATATCTTAATTCGAAGTAGTCTCGAGGTTTAGGTTCTATTCTTGGGACTTAACTAAATTCACGGTGCTGCATTTTGCGTAGTTTAAATCCACATGTTCTACTTTCAACCACATGGGAGTATACAATTTTATGATTTTTCCAATAGTAAGGTAGCTTGAACGTAAACTAGACTTTTTGCACTTCGATGAAACGCCTCTTTGATCAACTATGTTTTGATACTTTCTTTAGGTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAA-TTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATA-CACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATG</genome_strand>
        <mrna_strand>CTTGTTCGTTCTGCTGACGGTGATCAGATTTGCTATGATCATTTTGCATTTAGGACATTTGGG..........................................................................................................GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTGGATTTTGGTTACGAACGACGAGAAGAGTTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTTTCAACTTCCAGTCGTGGGAGTGGGGTTAACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTCGATCAGCTTAGTCCAGAAGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAATCAAAAAGTACACTAACATTTCGCACTGCGGAAAAGAGTATGCTGCACTTGCAAGTGCATTCGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACAACTGGCTAG...................................................................................................................................................................................................................................................................GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATCGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTATTCTAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTCTTTCGAATTTTCAGATGGCACTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGCGACTTGTACTACCGCAATATAAAGATTTACCCACAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGAGTTTCATAGGCGGGACGGATTTGAAGTTGGAAATGCTGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACCCGTCGTGCAGCAT----G--A----G-AGCAGTTGGACGTTTCGACTGTGTGAAGGTAATTTCTTGGCATATTCAACTGGATGACTACTCCAAGATT-AACTGTTG--G-AAGAAGATGATA-T-T-G---T---AGTATTATTATCCGTAACTATCACAAATTTCCTCTTGGCATATACCACCTGATATGTCAAGAAATTAGTTTGGATGAT-AAGTAGATAGATGAAATAATTAAACACCAATATTGATGTAGTCAGAGCAAAAATAAAGTTGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2117" ref_strand="+" ref_description="SGN-M2117 T1592 [cos_markers]">
      <seq>aggccggcgatgcccattgtctatatccaaatcagaagaaaacctctcatttttctctaaattactccaggaggccactctccggtaccgcaactttgagattctgcgattatcggcgtcgccggacggtacctatcagggctagttccaccgatgctgtcgtcattgagacgtcggagcagtcggacgtagtttttaaggagactttctcgttgaaacgaccggaaagggctgaaggaaagatatccatcagattggataaggggaaggatgaagagaattggaacctcactgtgggatgtagtttgccagggaaatggatccttcactggggggtccattatacagatgacactggcagtgaatgggatcaacctcctccagagatgcggccgtcaggttcaattgccataaaggattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="29731" stop="31651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30028" g_stop="30256" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30902" g_stop="31032" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="361" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31289" g_stop="31343" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="416" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31496" g_stop="31503" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="424" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-M2117" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30028" e_stop="30256"/>
          <exon e_start="30902" e_stop="31032"/>
          <exon e_start="31289" e_stop="31343"/>
          <exon e_start="31496" e_stop="31503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGGCGAAGCCCAAAG-CTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGGGTAAATTGTTGTATTTGATATTTATTCGTGTGTATATGTATTTACCTAGATATTTGCAGATCCGTGCATTGCGTGCTCTATTTTTCGCTTGAATATTTATTGGATCAATAGAAATGAGAGATTTTTATAGGAATTAATGAGTATTTGGAGCTTGAAGAATTGAGTTTTTCGCGTTTCCCGCCATTTCTGTGAGGAATTTCCTTTTTGTTAATTAATACAAGTAGTTTTGGATTGTTTGTTAAGTGTAAAAGCAAACTCTGCATGATTGGGCGTTGTGTATTCTCTCTTGGTTCAAAAGAATTGATATGTGTTTGGATCAGTGTTTAGCAACTATTCATATTGTTGTTATTATTATTATTTTGATGGGTTTCAACCCACTTCATTGATCACTTGGCCTACACAACTATTCATGTTAGTTTATGTTTGCATAAAGGGAAAAAAAGGAAGAAGAAGATTGGTCAAAAGTAGAGAGAGTAGCTGAAAATTCTGCCGTCATTTATAGATGTGCAGTTTTCTTTAATGCATATGTTTGAATCTCCTCTATTTCTTAAATAAAAGTGTAAGTGTTATTTGGCGAGCCCATTAATGGTATAGCGAAAGAAAAAAGGGCTGTTGAGGAGTGATTGTCTTGTGTTGGTATTGCAGGCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAGGTTAGTCTGATTTGAATATGGAAGCACTGCTATTTTTTTGTCCTTTTGGAGGTAGGAATAACTAGGTGAATAAATTTTACAATATCATGTATAGAAAAGGAATTAGCTTTAATTCAAGTTGTAGTCTTTAAGATGGGAAAATAGCTTTTTAGTTCTCGTTTGGAGATATATACCTCTTCAACTTTTGTGTAATAGTTATTAATTTCCTAAAGACTCTGAATATATTGTTTTTAATGTTTGTATTTTAAACTGGCAGTGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAGGTGTCTGCTACTATCCCTCTTGCTAGTTCGCTTAGTCCCCTTTTCTGTTAATATTTCTTCTTGAATGTGGATATAGTCGCTTCAATTTCAATTTAAGGTGTGTATCTCTTTCTCATATTTTTCTTTAAATGTGAATTTCATTGTTGTTACAGGATTATGC</genome_strand>
        <mrna_strand>AGGCCGGCGATGCCCATTGTCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTACTCCAGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTCGCCGGACGGTACCTATCAGGGCTAGTTCCACCGATGCTGTCGTCATTGAGACGTCGGAGCAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG................................................................................................................................................................................................................................................................TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG........................................................................................................................................................GATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7008" ref_strand="+" ref_description="SGN-M7008 C2_At1g69830 [cosii_markers]">
      <seq>ggaaactggagtttggtatcagcacagagggcgggacttcaaaattcctcttgttgactgccttgatgatgatgctaataccgttggtgttaaaaagggatcgggcatatggtcaggatcgcttgggaagctgtcaaacatcctccttaagccagaagctgctccttctaaaggggaatcaagcagcaatgacgggtctagtgtgaaaagcaggcgtcttgaagggttctacgaggagcatgccatagtaaaagagactcttgttgataacacagttagtgtctctgttaagcagtgtccagagactgccaagaatattttgtatatagataccgacttacctggaaatgtaattcttcactggggaatctgcaaaggtgatactaaaatatgggaacttcctgcaatgccatatccaacggaaacagtagtgttcaagaataatgcactgcggactttactgcagagaaaagagggaggcaatggttctaaaggactgtttactttggatggaggaccttccggatttgcttttgtggtgaagctagacgaaaatacgtggttgaattgtaagggagacgacttttatatacctctgccaagtggccaacatcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="31465" stop="36042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31765" g_stop="31880" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443">
            <donor d_prob="0.293" d_score="0.86"/>
            <acceptor a_prob="0.945" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32324" g_stop="32673" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="466" r_length="350" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32674" i_stop="35595" i_length="2922">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35596" g_stop="35748" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="619" r_length="153" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-M7008" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31765" e_stop="31880"/>
          <exon e_start="32324" e_stop="32673"/>
          <exon e_start="35596" e_stop="35748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAGGTTGTCCAGGGTACTTTTTGCTGTGAAATGCATACCAAATGTTCATATTTCTTGCCTCTCCCTTACATTCAATCCATGTCATCTCTTTCATGTTAACCTCACTGACTTTCTCCAGAGAAGAAAATGACTTAGATATGTTGAAACATATCTTTTCTAACAATGAAGATTGTTCACCCAGGCTAAAGAAGGGTTATATCTGTTTATGAAATATCTGTTTTTGCACTACTGTACTGTTGTGAATTTATGTACTTAACAAGTTATTTTGTATTATAATAGTTCAATTACTGTAATAGTTTCTAATCAAACCATTCCTCTGCTTAGCTGATATCTCAGCATGGATAGAAAGATCCTTAATGTCTTATCTTATTTGAGTAATTCTGTGACAAATTCAAGTTGTACTGAGAAAAGAAAGTAGAAGTTAAGTTGCTCTTCTTGCATTGCAGGATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAATGAGGGGTCTAGTGCGAAAAACTGGCGTCTTGAAGGGTTTTATGAGGAGCATGCCATAGTAAAAGAGACTCTTGTCGATAACATAGTTAATGTCTCTGTTAAGCTGTGTCCAGAGACTGCTAAGAATATTTTGTGTATAGATACTGACTTACCTGGAAATGTAATTCTTCACTGGGGAATCTGCAAAGGTGATACTAAAATATGGGAACTTCCTGCAATGCCATATCCAGCGGAAACAGTAGTGTTCAAGAATAAGGCACTGCGGACTTTGCTGCAGGTACTTGCTTTTGGACTTCCGAACTTCCAATTCCTTAGTTGTGTGGTTCAGTTGAGTCTACCGACAGTTCACGTCTTAAAATGTTAGCCAATCAAAATGCTGTATAAATTTTTTTTCATCAGCAGTTCATTGATTTTTTCCTGACCTGCTATTGTAGATTTGTGGTCATGGAAATCTCGAATCCTGGATTTTACTAGTGTTTTGTGCCTGGAATCTTCATACTCCCTCCACCCGAGCTAGAAGTCTAAGTTTGATTTCATGTGTTTAAGAGAACAGTTGAGCATGTTAAGTCTTTAGTATTTGTTAGGGTGGGTGTAACATGCAGGCCTAATACGATGACTTTTTTGGCTTCAAGAATACAGTAAAAGTTGCATTAGCGACATAAACATCGTAAATTGGTCTACTATTTTAAAGAGTAAATCTTGGTCCTGCATAACTTTTTCGATATCTCTAAACTATATTAAATCTTTTCTGGACACAATGTTGGACAGTCCAAAAGAGGGAAATGCAACAGCAACAACTTAGCCACAGTCTCGAACAAGTTGGGTTAGGTTATATAAAAACTACCTCATCATGTCCCCCACACAAATCATCTCAAGAAACATTATACTCCAAAAGGGGGAAGTAGGATTATTTTTTTGGGGATAGAGGGAGGGAGCACTATTTTCTTCCTTTTTTAATTCTTTCCATTGGTCACACACTCACATGTTTAGTATTCCTTTGCCAGACTACTGCTTTAATGTATTGGATACCTTGAGAATTGGAATTTGGCTTCCCTACACCTTCTCCTTGAAAGTGGCACAGTAGTTCTGGATCAAACAGGGATTTTTGTTGCAGTGTGGAAGCTTGTGTCTGTTGTAGCTTAGCATGTGCATATCCAGAGAAACTAACCTTCCTCTTCTTCTTTGATGAATGAAGGATCGTGATAGCCTTTCTATTTTAAAATTTTAATCTGTTGGTCCAATTTTACATTAGTTGTCTGGTTCAGTTAAGTCTAGCAAGTTACATGCCCTTTAATGTTAAATCATTGAAAGTGCCTTGTGAATTGATGTAAAGGAGTCACTCTAGGTTATTGATGCAATTTTGTAAGCAGTATCTTGATCAAAATGCTTACTTAGGAAAAGGAAACATGGAAGTGGTCATGTGGATCTGTTTCTGACCAGTAAGTCAATGGATTTTATCAGCCATGTCTTTCTAACCTGCTATTTTGATTAGTGGCTGTCATGACCTCCGATCACGGATTTTTTGAAGTGCTGAAAACCTGGATCCTCGTTGATACTCTTTCCATTCAAAATGAGTTGTCTTTAGAGTAACTCAGCATGTTAATCAAAGGAGGAGCAAGATGTAAATTACTTAGCATTTCATGAGGGAATATGTGGGTGCTATATGTTAGACTTTTGTGGTTTAGAAATTAGATTGAACACTGTATTCTTAAGTGTAAAATGGTTCCTACATGATATTTAGAGTGCACAAACTATTTAAAAAACTGTAAAGAACTTTTTTTCTTATGAAAATAGTCAGAATTTTGGACGGTCTGAAAGGAATATGACATTTTTTGGGGGACTGTTTTGTTTTCTTTTCCGTTTGCCATTTGTTATCCCTTTGATATACTATATTGCTTAACATTTTAGTTGCCACGAAAAATGGAATCTTTGCCTTATCTACATTTACTTGGTGAAAGCAGCTGAATATGTCTGGACATGAAATGGGGCTACTAGTTGCTTAAAATGTGCAAGTTTGCACTAGCACATATACATCAAAGCAACTAGTCTTTCTCTTCTTCTTTAATGAATAAAGAGACGTATAGATAACTGGAGATTAAATGAATCAACACATTTTTGGGGACGATTTTCTAATTTAGTAATAACCGAAAGAAATTGGATTAAGAACTAGACAAATAACAGAATTAATGGGAAAATGGAAGTATAACAATTGACACTCCAATGAAGACTTCTGGAGCTGCATGAGAAAAGGAAGAAGATGTCATAGAATTGCAGAATGAAGAATAGAAGAGAAGGAAAATGGAAGAAGAAGGTCATATGATTAGGGGTAGAGAGAATATACCATAGGTTCGTTGCCTGCTCCTTTTCTCTTGGTTGTTATATATAGCAACCAAAAGTGATAGTGAGATGCACTATCTTAGCGTTTGGAGCTCATTAATCACTCACAATCTCAGCCCTCTACGTGTTATTAATATAACTAAATCTAGCTTCTTAATCATTTATATACCAGATCATGACAGGAAGTTTGACCTCTTTTTTCCCAAGGTTTTAATCTGTTTGTTTATTTTTATAAGAGGGGAATTCCTACATGTAGTGCAAATGTAGAACAATTGTTCTTTTCCAGGGAAACTTAGAATCGGACTGCTATCAGTTGAATATTTAATTTGAATAGAGATGATGCTTGATTTTTGTATACCGCGATTAGAGAGGAAACTACAAGGAAGGTAGCCGTTTGAGAACGTGAACATATTCTGAACTACTGTTTCTCAAGGGGAGGCTCAAACATGACTTAAGATACCAACCTGGGCTAATAAGTTTGCTACTGTCATCAAGCACTTTAAAGTTTGGAATCTTTTCCCTTCAACAACTGCTGTATTTTAGATTTGTCTGATCTCCCATGACGGAAGGGTCTGACAGAGTGGTGCACATGCATCTAGGATTCTTTTTAACTAGTCTATGTCTCTACAGTTAAAATTTGAGTTTATGCAACACAAATTTGCAACTTAGAATGTATCAATGTTTGATATAAAGTTGCAATGCCATACTTGTGGGTCTCTTTCTCATTGGATTATCATCTTCTTCACTTTTCTTTTCGAGATTCTCTTTGGAAAATTTCTCAATATCCCGGAAAATTAAGTAACCTTTTGTTTTTAAGACCAGCTATTTCTCTATATTTTGATGACATATGCTCTTGTTGCAGAGAAAAGAGGGAGGTAATGGTTCTTCGGGACTGTTTACTTTGGATGTAGGACTTGCCGGATTTGTTTTTGTGGTGAAGCTAGATGAAAATACGTGGTTGAATTGTAAGGGAGATGACTTTTATGTACCTCTGTCAAGTGGCACATTACATTTG</genome_strand>
        <mrna_strand>GGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAAATTCCTCTTGTTGACTGCCTTGATGATGATGCTAATACCGTTGGTGTTAAAAAGGGATCGGGCATATGGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCTTGGGAAGCTGTCAAACATCCTCCTTAAGCCAGAAGCTGCTCCTTCTAAAGGGGAATCAAGCAGCAATGACGGGTCTAGTGTGAAAAGCAGGCGTCTTGAAGGGTTCTACGAGGAGCATGCCATAGTAAAAGAGACTCTTGTTGATAACACAGTTAGTGTCTCTGTTAAGCAGTGTCCAGAGACTGCCAAGAATATTTTGTATATAGATACCGACTTACCTGGAAATGTAATTCTTCACTGGGGAATCTGCAAAGGTGATACTAAAATATGGGAACTTCCTGCAATGCCATATCCAACGGAAACAGTAGTGTTCAAGAATAATGCACTGCGGACTTTACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGAGGGAGGCAATGGTTCTAAAGGACTGTTTACTTTGGATGGAGGACCTTCCGGATTTGCTTTTGTGGTGAAGCTAGACGAAAATACGTGGTTGAATTGTAAGGGAGACGACTTTTATATACCTCTGCCAAGTGGCCAACATCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7008-2" ref_strand="+" ref_description="SGN-M7008-2 C2_At1g69830-2 [cosii_markers]">
      <seq>ctttggatggaggactttccggatttgtttttgtggtgaagctagatgaaaatatgtggttgaattgtaacggagacgacttttatgtacctctgtcaaatggcacattacatttggaggagagaaaacaaaacgaggagtcaaattcttcccagctagccaatcgtttgcctgaggagagccaagaaggctctgtgtatactgatgaaataataaaggagataaggagtttggtgagtgacatttcttctgaaaagagccgaaagacaaaaaataaggagacacaggaaaccattcttcaagaaattgagaagcttgctgcagaagcttatggtatattcagaagttcaatcccaacaataccagatattgctgtttctgattctgaggttatacaacctgatgtgaaagtaacatcaggaactggtacaggatttgagattttgtgccagggttttaattgggaatctcataaatctggaagatggtacaaggagctacatgaaaaagctgcggagttatcttcacttggattcagtgtgatctggttacctccaccaactgactcagtgtcagcagagggatacatgcctagggatttatataacttaaattccagatatggtagttttgatgaattgaaagttacggtaaagaaattccatgaagtgggcatcaaggttcttggtgatgttgtcttaaatcatagatgtgcaagtgaacggaatcaaaatggtatatggaatatctttggtggtcggttaaattgggatgagcgtgcagttgttgcagatgatccacatttccagggaaggggcaacaaaagtagtggagataatttccatgctgctcctaacattgatcattcccaggaattcgtgagaaaggatatcagggaatggttactctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="+" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="35333" stop="39128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35633" g_stop="36251" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36892" g_stop="37081" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="809" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38724" g_stop="38828" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="914" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="+" ref_id="SGN-M7008-2" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7008-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35633" e_stop="36251"/>
          <exon e_start="36892" e_stop="37081"/>
          <exon e_start="38724" e_stop="38828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGATGTAGGACTTGCCGGATTTGTTTTTGTGGTGAAGCTAGATGAAAATACGTGGTTGAATTGTAAGGGAGATGACTTTTATGTACCTCTGTCAAGTGGCACATTACATTTGGAGGAAAGTAAACAAAGCGAGGAGTCAAATTCTTCCCAGATAGTCAATCGTACGCCTGAGGAGAGCCAAATAGGCTCTGTGTATACTGATGAAATAATAAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAGGTATTATAATAAAAATTTTCTCCGTTTCCATTTTTGTTAGCGTAAATCATGCATTTTTGGTCTAATTTATAGCGCAAGTAATGGATATCATATCTGGATTTATGAGATGAAGTTCAAAGTATCTCAAACTGTTTATAATTATTTTTTTTTCATTATAATTTAAATAGGAGATACACCGAATATAATGAAGGGCAGTGTCATTTAAAATTTTTTGCTGATGAGAATTCAATGTCTCCTGGCTATTAGCTTCTTTATTTGGAGTTAAAATAGGGGATATGCCAACATTTAAGAAGGGAAACGTTGCTTGTACTTCCTCATTCCTTTTTCCCAATCTTTTCATTTTCTACTCGTTTGTTATGATTAAACATACAAAATTAGTTGCCACAAGAATATTTGTTTTGCTCTTTTGTTTTTTTTACTGAAGTTGCTTTCTGTCTTTCTCTGCTTTCTAGTAAACCGTTACTTAGTACCTAATTTTGGCATCTTATTTTATCCTTCATTTTGAACATTGATCAGGTAGTTCCTACTAGGTAAAATGAGACTTTCATGAAGCAAATTTATTTCTCTCTCGATTTGTGATTTTCTATCTGTACTTGTTTAGTGTATCTCATTTTTGTGTGGTTTTCTGTATCTTTATCAGATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAGGTGTGTATTTCTCTCTTGATTTTTCTTTGCTGTTGTACCAGCAAAGGAAATTTTTTGGTGATGCTTGTCCTTCACCAGAAGATTAGAAATAATCACAAATTCAGAGAGGATGCAGAGTAGCAAACTGGAATATTTGAGAATTTGCTTGTCCCCCACCGGATGAATAGTATATCCGTTCCTTACTTTGTAATTTGAAATCAATTGCAGTGAGATATTAATCCAGAGAATTCTTTTTACATTAAAATATTTTTAATATGTCAAAATAAGGTTTTCCAAAAGGGTTGTTGGAAAAGGTGAAAGGTCAAGGATAGGACTAATTGAGATTCTTGCTCAAACTAACATTATGGTTCTTTAGCCTTCTAATATGCTAACCTAGAATCCGTGTGCGCGATATATCATTTAGAATACATTAAGATCTTGAAAACTAAATGAAGCACTAAGAACACTATATTTGCATTGTTCACATTTTTTATCCTCAAATATTTCATCTTAGTTACATTACTATCTCTTTCATAATAAGGATATATTTGCCTTTTTACGCTAATACAAAACAGATCCTTGCTTCTCATGGTCCCTCTCCGTTCTTTCCTCTTTTGCCATTCCTCTCAATTTCGTTCTTCAGAAAAGCCTTCCTGTCAATCTCTTTCTATTGTCTTCCGCATTTGATCTCCGGCATCTGCTTCCTTGTTTTCCTATGCCATTTCCTTTTCTTCTGGGAATAACTTCATCATTAGATCGGTGGTGCTATCCATTTAATATACTGCCATCGTACGGTGGAACTTCATTGGTACCACCAACACCAGCTTCAATTGTGGACTAGTAGCGGGAGCCCATGGCTGAACCTTTTTCTTTGTACATTTTTTAACATTCATTGCTTGCTGTAGTCTTTGAAATAATCACAAATTTGTGCAATTGGAAATGGTCCAAGGCAAAAGAATGATTAACGTGTTTGCTATCATTGGATCATTGATACTCAAAATTATCTAGTGAGCGAGAAATCTGAAAAGAAGAAGAGAGTAACTAAGGGGAAACAGGAATGAGAAAAAAAGAAAACTTAAGAGGAAAGAAGTAGGAGATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTATTGTTTGCTCAAACATACAAAAAATAACCTTAAAATGATTAAATGGCAAAGGTAACTTTAAGGGAAATTTGAGAAATGAAAAAATTGAGACAATGCTAACCTACTATGGAAAAACCCATAAATATGGTTTAAACTCCTTGGGGGTTGGGTGAAGCAGACAAGAGAGGCCAAAATCATCATCTTTTACCCATTGGCTGGTGCTCTTATCTTCCTTTCGGAGTGCATTATCTGATTTCTATTTGCTTACTTCCAAAAGTAGACGGCATAAGTGAGGGGAGGTACACTTTCCTATACTCGTTTGATTTTCATTTGTGCTTTTAAATTGGCTGGCTTACTCTTTAAAATATCTATTAATCGCTAAAGCAATGTTCTGCAACTCCTTTACTATGGTTTAGCCAGAATAACTTTGTGGCTAGCATGACATTTTTGCTTCCCTTTCTCTTAATGAGATACGGACTGGTTTTACAAGATCTGTTTAACCAGATGTCTGAACTACCTTCTTTTTTCTACAGGGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTG</genome_strand>
        <mrna_strand>CTTTGGATGGAGGACTTTCCGGATTTGTTTTTGTGGTGAAGCTAGATGAAAATATGTGGTTGAATTGTAACGGAGACGACTTTTATGTACCTCTGTCAAATGGCACATTACATTTGGAGGAGAGAAAACAAAACGAGGAGTCAAATTCTTCCCAGCTAGCCAATCGTTTGCCTGAGGAGAGCCAAGAAGGCTCTGTGTATACTGATGAAATAATAAAGGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAAGGAGACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTTGCTGCAGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACCAGATATTGCTGTTTCTGATTCTGAGGTTATACAACCTGATGTGAAAGTAACATCAGGAACTGGTACAGGATTTGAGATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACAAGGAGCTACATGAAAAAGCTGCGGAGTTATCTTCACTTGGATTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCAGCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTAGTTTTGATGAATTGAAAGTTACGGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8780" ref_strand="+" ref_description="SGN-M8780 C2_At5g20220 [cosii_markers]">
      <seq>aaaaacatcaaaaagaaaataaaatctccattttaagtcacttcttcaatttgaagaaattctcatgtacaacgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaaacttagcttcttttatttacctattttatcttctttcactaataataatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgatgctgatttgcagccaaggaaggtcatttctagttcatcgagtccgagatcatggtttggcccaaatggacagtatataagagaactgccttgtccaagctgcagaggaagaggctacacttcatgtactgaatgtggaatcgagagatccaacttagattgttcgttgtgtaatggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagagtctatcgatgaacggccttgggagaaagctcgatcaagttcacctttaaaagtaaaagaagacgatgaagtggacgacttagacataaagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccaacacagaagtcaatttgaagatcagcagatcactaaaattggatgattgcagagcctaaatgccaaaactggattatttagtaaaaggatgaagattatccatggcgatccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50139" stop="46965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49839" g_stop="49598" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="461" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="550" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47513" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="683" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47340" g_stop="47265" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="759" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-M8780" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49839" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47513"/>
          <exon e_start="47340" e_stop="47265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAAGTTAGTATTCATTTTTCTGTTACTTGGTTTTCTTGTTTTGATGTTTCGATTTCACCACTATTGTCTGGACAATGTAGTGAACCTTTCATTTGGATGATCTTTGGTTCCTCAGGCGAAATGTTAAACTTTTTGACGGATTTTCCATTTCTTGAATATAATCTTTTTTGTTTAGTTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</genome_strand>
        <mrna_strand>AAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAACGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA............................................................................................................................................................................TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8780-2" ref_strand="+" ref_description="SGN-M8780-2 C2_At5g20220-2 [cosii_markers]">
      <seq>agggtcttctcttcatccacataactccttaaaaaacatcaaaaaaaaaatctccattttaagttactcctttgctctttcaatttcaagaaaatcctatgtacaatgtcaacaacaatatggtcatcaatgttgcctcaatggagatattgtaacaagaatttgcattattggatattaccaccttcaaaaactaagcttagcttcttttatttacccattttaccttctttcactaataatgatgattctgtatcacccatcaaacaaaatcaggctatgtatgacccttcagaggagctttttggacttgctgctgatttacagccaaggaaggtcatttctagtgcatcgagtccgagatcatggtttggcccaaatggccagtatataagagaattgccttgtccaagctgcagaggaagaggctacactccatgtactgaatgtggaatagagagatccaacttagattgtttgttgtgtaacggaaagggtatgataacttgtcatcagtgtggtggagattgtgtcatttgggaagaatctatcgatgaacggccttgggagaaagctcgatcaagttcccctttaaaagtaaaggaagacgatgaagtggacgacttagnacataagcttgacgcgaagagaaaaaccaagcgtgtctaccaatctcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0058L13-zML53/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0058L13.1" temp_strand="-" temp_description="C05HBa0058L13.1  AC194694.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0058L13, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="50168" stop="47247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49871" g_stop="49598" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49201" g_stop="49146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="332" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48341" g_stop="48179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="495" r_length="163" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48063" g_stop="47975" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47645" g_stop="47547" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="683" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0058L13.1" gen_strand="-" ref_id="SGN-M8780-2" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0058L13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8780-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49871" e_stop="49598"/>
          <exon e_start="49201" e_stop="49146"/>
          <exon e_start="48341" e_stop="48179"/>
          <exon e_start="48063" e_stop="47975"/>
          <exon e_start="47645" e_stop="47547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTCTTCTCTTCATCCACATAACTCCTTAAAAAAACATCAAAAAGAAAAT-AAAATCTCCA-TT-TTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAGGTATTGAGTTTTTTCTTTTTTCCCTTTTGTTCTCCTTATATCACAAAATTATGTTTTGTCACACTAAAAAGGATGACATTATAGTTATACAATATTTTATAGCTAGTTAGGGGAGTAAGTTATTCATGTATAAAATTAATATTATGTTTGTTTTGTTATTTAGAAACTTATTTAACTATGTATATGCATTACTAATAGTTGCATAATTCTAACCATGCTACAAAACGACCCCTTAGTGTTAGTGGTAAAGTTTTAACTTTTATATTGAATAAAGTTTAAATTATTTAGTATGACATTTGTGATTTTAACTTCATGGTAGATATAGTTAAATTAACCTGTTGTTGCTTGGAACAAATTATCATAGAGGGGCTTATATTTAACATGTTGTATTGATAGGCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAGGTTTTAACTTTTTTCTTCTGCTTCTGTTTAATTGCTTTTATTAAATCATGGACTATGTTTTGTTGCTGAATTAGAGTTTCTATTTGTGTTTTCTGTTAAGTTTGTAAAGTTTGGCAATGACCTTATGTTTTCTTTTTTTTCTGTTGTTATATAGTTATGTTAAATCTATACTAGTAGTCGTAGTATTTCTCCTATAGTTTCTAGTCCTTCGATTTCTGTTACTGTCTATTGTCTCTTGTACTTTGATTATCACACTATCTTGTTGTGGTTATTGTTCCTTCTTTGCCATGATTTCTTCACTTCTATTATTTCATTTTTTATCTTCTTTGAAATGCTTTTTCTTGAGCCAAGGGTCTATCAGAAACTGCTTCTCGGCCTTCCAAGGTAGGGTGAGGTCTAGCCTACAATGTACCCTCACGAGACCTCACTTTTGGGATTACACGAATATGTTGTTGTTATTGTATTTTCCTTACATGTATTTTGTTATATTTCTGTAGTTTTTCTTAACTAATGGTAATTGTTGTGCTGAAGTATGATCACCTTCCTTCTTTTCTGAACGCGGAAATTTAATTGTGTGTTTGAAGTTTGCTCCTTGGAATAGTCCTTGAAACAGTAATACTTTTTAGTCTTTCATGCTAATAAGACAGTGACTGTATAGACTGGATACTTTGATAATCGGAGAACAAACTATATACCCCATCCAGCCATCCTCATGATAAGAAGCCTCTTTTCGTGTATTTACTCGTGATTATCCCCTGAGCAAGTTAACTATCCATTTTGACCTGTATTTTAATCATCTTCCAGGAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAGGTAACTTCTTTTGTAGATCATGTTTATTGAGCTCTAAATTACCTGTATATACACTTGATATGTAAGTTGATCGTATAAGAGTTATGTCCTTAGTATAAGTTTTCATGTACGGCAGGGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAGGTAATATTTCCCGCCTCAAGTTTCAGTTTAGATACCATTTTGCCAAAGCCATGTGTTCTCGTTGTACTATTATTACATCCGACTTGTACGTTTGCTCTATAATCAAGTTTTACTCATTGTTCTACTCTCAATATGTACCAACATGTTTGCATCGCCACATTTTGCTTAAGCATGGCATTCTGTTTTATGTAGTCGAAGGAGTTAAAATGACCTTTGTTTTATATTCTGCACTAGACATCTTGTGCTATAATCGTTCTTTCTTCGAACGCAATATTTCTCTGCAAATTTAGGTAACTTTGCTGATAAAAAATCTACATGATACTTTGCAGTTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAG-ACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</genome_strand>
        <mrna_strand>AGGGTCTTCTCTTCATCCACATAACTCCTT-AAAAAACATCAAAAAAAAAATCTCCATTTTAAGTTACTCCTTTGCTCTTTCAATTTCAAGAAAATCCTATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAGCTTAGCTTCTTTTATTTACCCATTTTACCTTCTTTCACTAATAATGATGATTCTGTATCACCCATCAAACAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGCTGCTGATTTACAGCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCATTTCTAGTGCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGCCAGTATATAAGAGAATTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTCCATGTACTGAATGTGGAATAGAGAGATCCAACTTAGATTGTTTGTTGTGTAACGGAAAG...................................................................................................................GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAATCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG.........................................................................................................................................................................................................................................................................................................................................TTCCCCTTTAAAAGTAAAGGAAGACGATGAAGTGGACGACTTAGNACAT-AAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="26504" PGL_stop="21977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26187"/>
            <exon e_start="25338" e_stop="25189"/>
            <exon e_start="25082" e_stop="24867"/>
            <exon e_start="24308" e_stop="24187"/>
            <exon e_start="23927" e_stop="23764"/>
            <exon e_start="23036" e_stop="22882"/>
            <exon e_start="22371" e_stop="21977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26187" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26186" i_stop="25339" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25338" e_stop="25189" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25188" i_stop="25083" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25082" e_stop="24867" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24866" i_stop="24309" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24308" e_stop="24187" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24186" i_stop="23928" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23764" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23763" i_stop="23037" i_length="727"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23036" e_stop="22882" e_length="155"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="22881" i_stop="22372" i_length="510"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="22371" e_stop="21977" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26187"/>
              <exon start="25338" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="21977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25251" stop="25189"/>
              <exon start="25082" stop="24867"/>
              <exon start="24308" stop="24187"/>
              <exon start="23927" stop="23764"/>
              <exon start="23036" stop="22882"/>
              <exon start="22371" stop="22009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6531-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTGGTCCCGATAAACCCATGAAAAAAAATACATTCTTCTTCTCAGTTGATAAAGCCCAATTAAGGAACAATAAACAACCAAAAAAGATGTCATCAATGATCAAATTACCATCTTGCATGTTAAGTGTCAATTCATCTTCTTTTTCAATCAAATCATCAATTTTTCCAAAATCCATCTCTTTCTCCTCTAGCCATATTAATAATTTCAAGAACCCTTTTTTGAACTCTAAAACTCCAATGGAAAATCAGAGTTTTTCAATGTTATCTGCTTCTAAACCTCAAAATGGAGCTGTAATTCAAGATTCTTCTTTTCAG : GGAAGTGAATCATTCTTCAGGAGTGTGTTGGGGAACATGGAAGCCATATATCTGAATAAAAACCCCACTGCTAAGGCTATTTTGGAGCTCGTTCGTTCTGCTGATGATGATCAAATTTGCTATGATCATTTTGCATTTAGGACATTTGGG : GTAAATGGTCATGGCATTGATTCTATGTCAAAGTTCTTCTTAGATTTTGGTTACGAACGACGAGAGGAGCTGAGATTCCCTGCTAAGAAGTTGAAAGCTTTCTGGTTTTCTCCTCCGAAGGTATCAACTTCCAGTCGTGGGAGTGGGGTTCACGGGCCATTGCCAAGAATATTTATATCCGAACTTCTTGTTGATCAGCTTAGTCCAGAAGCTCAG : GAAATAATCAAAAAGTACACTAATATTTCGCACTGTGGAAAAGAATATGCTGCACTTGCAAGTGCATTTGGGATTTTGACATGGGAAAAACCCTCGTATTCGGAATTTCAACTACTGGCTAG : GGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGGATATGCATTGAATCATGTTACCATATCTACCCATCGGTTGGCATCAAATCTGAGAAGCATTGGAAATCTAAATCAATTTATCGAAGAAAATGGTTTCAATTTGAACTCTGAAGGGGGTTTTCTAAAGG : TGAGCCCTGATGGTCTTTTGCTGCAAAGTTCAACTGTAGCAGATTCTACCTTTTTCGAATTTTCAGACGGCATTACAGAAGCAGTACCTTGTTCATACATTGAATTTGCTGAGAGACTTGTACTACCGCAATATAAAGATTTACCAGCAGAAAAG : GTGGAGGAGTTTCACAGGCGGGACGGGTTTGAAGTTGGAAATGCCGACAAGATATTTGAGAGTACATCCAAGGATCAGTTAACTCGTCGTGCTGCATGAAAGTAAGCGCGAAGCAGTTGGATGTTTCGACTCTGTGGAGCTAATTCTTGGCATGTTCAGCTGGATGACTACTCCAAGATTAAACTGTTGTTGAAAGAAGATGATATTGTAGCTCTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACACCTGATATATCAATAAATTAGTTTGGATGATAAAGTAGATAGATGGACTAATTAAACACCAATATTGATGTAGTCAGTGCAAAAATAAACTTGTCAATGCTATCCATCTTATGATTTCTCTCGACAAAAAT</gDNA_template>
            <first_frame> S  I  G  P  D  K  P  M  K  K  N  T  F  F  F  S  V  D  K  A  Q  L  R  N  N  K  Q  P  K  K  M  S  S  M  I  K  L  P  S  C  M  L  S  V  N  S  S  S  F  S  I  K  S  S  I  F  P  K  S  I  S  F  S  S  S  H  I  N  N  F  K  N  P  F  L  N  S  K  T  P  M  E  N  Q  S  F  S  M  L  S  A  S  K  P  Q  N  G  A  V  I  Q  D  S  S  F  Q  :  G  S  E  S  F  F  R  S  V  L  G  N  M  E  A  I  Y  L  N  K  N  P  T  A  K  A  I  L  E  L  V  R  S  A  D  D  D  Q  I  C  Y  D  H  F  A  F  R  T  F  G  :  V  N  G  H  G  I  D  S  M  S  K  F  F  L  D  F  G  Y  E  R  R  E  E  L  R  F  P  A  K  K  L  K  A  F  W  F  S  P  P  K  V  S  T  S  S  R  G  S  G  V  H  G  P  L  P  R  I  F  I  S  E  L  L  V  D  Q  L  S  P  E  A  Q  :  E  I  I  K  K  Y  T  N  I  S  H  C  G  K  E  Y  A  A  L  A  S  A  F  G  I  L  T  W  E  K  P  S  Y  S  E  F  Q  L  L  A  R :   E  S  E  Y  A  A  W  T  L  V  N  G  Y  A  L  N  H  V  T  I  S  T  H  R  L  A  S  N  L  R  S  I  G  N  L  N  Q  F  I  E  E  N  G  F  N  L  N  S  E  G  G  F  L  K   : V  S  P  D  G  L  L  L  Q  S  S  T  V  A  D  S  T  F  F  E  F  S  D  G  I  T  E  A  V  P  C  S  Y  I  E  F  A  E  R  L  V  L  P  Q  Y  K  D  L  P  A  E  K  :  V  E  E  F  H  R  R  D  G  F  E  V  G  N  A  D  K  I  F  E  S  T  S  K  D  Q  L  T  R  R  A  A  *  K  *  A  R  S  S  W  M  F  R  L  C  G  A  N  S  W  H  V  Q  L  D  D  Y  S  K  I  K  L  L  L  K  E  D  D  I  V  A  L  K  V  L  L  S  V  T  I  T  N  L  L  L  A  Y  T  P  D  I  S  I  N  *  F  G  *  *  S  R  *  M  D  *  L  N  T  N  I  D  V  V  S  A  K  I  N  L  S  M  L  S  I  L  *  F  L  S  T  K   </first_frame>
            <second_frame>  A  L  V  P  I  N  P  *  K  K  I  H  S  S  S  Q  L  I  K  P  N  *  G  T  I  N  N  Q  K  R  C  H  Q  *  S  N  Y  H  L  A  C  *  V  S  I  H  L  L  F  Q  S  N  H  Q  F  F  Q  N  P  S  L  S  P  L  A  I  L  I  I  S  R  T  L  F  *  T  L  K  L  Q  W  K  I  R  V  F  Q  C  Y  L  L  L  N  L  K  M  E  L  *  F  K  I  L  L  F  R :   E  V  N  H  S  S  G  V  C  W  G  T  W  K  P  Y  I  *  I  K  T  P  L  L  R  L  F  W  S  S  F  V  L  L  M  M  I  K  F  A  M  I  I  L  H  L  G  H  L  G :   *  M  V  M  A  L  I  L  C  Q  S  S  S  *  I  L  V  T  N  D  E  R  S  *  D  S  L  L  R  S  *  K  L  S  G  F  L  L  R  R  Y  Q  L  P  V  V  G  V  G  F  T  G  H  C  Q  E  Y  L  Y  P  N  F  L  L  I  S  L  V  Q  K  L  R :   K  *  S  K  S  T  L  I  F  R  T  V  E  K  N  M  L  H  L  Q  V  H  L  G  F  *  H  G  K  N  P  R  I  R  N  F  N  Y  W  L   : G  R  V  S  M  L  P  G  H  L  S  M  D  M  H  *  I  M  L  P  Y  L  P  I  G  W  H  Q  I  *  E  A  L  E  I  *  I  N  L  S  K  K  M  V  S  I  *  T  L  K  G  V  F  *  R  :  *  A  L  M  V  F  C  C  K  V  Q  L  *  Q  I  L  P  F  S  N  F  Q  T  A  L  Q  K  Q  Y  L  V  H  T  L  N  L  L  R  D  L  Y  Y  R  N  I  K  I  Y  Q  Q  K  R :   W  R  S  F  T  G  G  T  G  L  K  L  E  M  P  T  R  Y  L  R  V  H  P  R  I  S  *  L  V  V  L  H  E  S  K  R  E  A  V  G  C  F  D  S  V  E  L  I  L  G  M  F  S  W  M  T  T  P  R  L  N  C  C  *  K  K  M  I  L  *  L  *  K  Y  Y  Y  L  *  L  S  Q  I  Y  S  W  H  I  H  L  I  Y  Q  *  I  S  L  D  D  K  V  D  R  W  T  N  *  T  P  I  L  M  *  S  V  Q  K  *  T  C  Q  C  Y  P  S  Y  D  F  S  R  Q  K  </second_frame>
            <third_frame>   H  W  S  R  *  T  H  E  K  K  Y  I  L  L  L  S  *  *  S  P  I  K  E  Q  *  T  T  K  K  D  V  I  N  D  Q  I  T  I  L  H  V  K  C  Q  F  I  F  F  F  N  Q  I  I  N  F  S  K  I  H  L  F  L  L  *  P  Y  *  *  F  Q  E  P  F  F  E  L  *  N  S  N  G  K  S  E  F  F  N  V  I  C  F  *  T  S  K  W  S  C  N  S  R  F  F  F  S   : G  K  *  I  I  L  Q  E  C  V  G  E  H  G  S  H  I  S  E  *  K  P  H  C  *  G  Y  F  G  A  R  S  F  C  *  *  *  S  N  L  L  *  S  F  C  I  *  D  I  W   : G  K  W  S  W  H  *  F  Y  V  K  V  L  L  R  F  W  L  R  T  T  R  G  A  E  I  P  C  *  E  V  E  S  F  L  V  F  S  S  E  G  I  N  F  Q  S  W  E  W  G  S  R  A  I  A  K  N  I  Y  I  R  T  S  C  *  S  A  *  S  R  S  S   : G  N  N  Q  K  V  H  *  Y  F  A  L  W  K  R  I  C  C  T  C  K  C  I  W  D  F  D  M  G  K  T  L  V  F  G  I  S  T  T  G  *  :  G  E  *  V  C  C  L  D  T  C  Q  W  I  C  I  E  S  C  Y  H  I  Y  P  S  V  G  I  K  S  E  K  H  W  K  S  K  S  I  Y  R  R  K  W  F  Q  F  E  L  *  R  G  F  S  K  G :   E  P  *  W  S  F  A  A  K  F  N  C  S  R  F  Y  L  F  R  I  F  R  R  H  Y  R  S  S  T  L  F  I  H  *  I  C  *  E  T  C  T  T  A  I  *  R  F  T  S  R  K   : G  G  G  V  S  Q  A  G  R  V  *  S  W  K  C  R  Q  D  I  *  E  Y  I  Q  G  S  V  N  S  S  C  C  M  K  V  S  A  K  Q  L  D  V  S  T  L  W  S  *  F  L  A  C  S  A  G  *  L  L  Q  D  *  T  V  V  E  R  R  *  Y  C  S  S  E  S  I  I  I  C  N  Y  H  K  F  T  L  G  I  Y  T  *  Y  I  N  K  L  V  W  M  I  K  *  I  D  G  L  I  K  H  Q  Y  *  C  S  Q  C  K  N  K  L  V  N  A  I  H  L  M  I  S  L  D  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26187"/>
                    <exon start="25338" stop="25189"/>
                    <exon start="25082" stop="24867"/>
                    <exon start="24308" stop="24187"/>
                    <exon start="23927" stop="23764"/>
                    <exon start="23036" stop="22882"/>
                    <exon start="22371" stop="22273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGPDKPMKKNTFFFSVDKAQLRNNKQPKKMSSMIKLPSCMLSVNSSSFSIKSSIFPKSISFSSSHINNFKNPFLNSKTPMENQSFSMLSASKPQNGAVIQDSSFQGSESFFRSVLGNMEAIYLNKNPTAKAILELVRSADDDQICYDHFAFRTFGVNGHGIDSMSKFFLDFGYERREELRFPAKKLKAFWFSPPKVSTSSRGSGVHGPLPRIFISELLVDQLSPEAQEIIKKYTNISHCGKEYAALASAFGILTWEKPSYSEFQLLARESEYAAWTLVNGYALNHVTISTHRLASNLRSIGNLNQFIEENGFNLNSEGGFLKVSPDGLLLQSSTVADSTFFEFSDGITEAVPCSYIEFAERLVLPQYKDLPAEKVEEFHRRDGFEVGNADKIFESTSKDQLTRRAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="30028" PGL_stop="31503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30028" e_stop="30256"/>
            <exon e_start="30902" e_stop="31032"/>
            <exon e_start="31289" e_stop="31343"/>
            <exon e_start="31496" e_stop="31503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.963" e_score="0.930"/>
          <exon-intron don_prob="0.922" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="30028" e_stop="30256" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.963">
            <gDNA_intron_boundary i_start="30257" i_stop="30901" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30902" e_stop="31032" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31033" i_stop="31288" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31289" e_stop="31343" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31344" i_stop="31495" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31496" e_stop="31503" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30028" stop="30256"/>
              <exon start="30902" stop="31032"/>
              <exon start="31289" stop="31343"/>
              <exon start="31496" stop="31503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCGGCGAAGCCCAAAGCTATATCCAAATCAGAAGAAAACCTCTCATTTTTCTCTAAATTTCTCTCGGAGGCCACTCTCCGGTACCGCAACTTTGAGATTCTGCGATTATCGGCGTAGCCGGACGGTACCTATCAGAGCTAGCTCCACCGATGCTGCCGTCATTGAGACGTCGGAACAGTCGGACGTAGTTTTTAAGGAGACTTTCTCGTTGAAACGACCGGAAAGG : GCTGAAGGAAAGATATCCATCAGATTGGATAAGGGGAAGGATGAAGAGAATTGGAACCTCACTGTGGGATGTAGTTTGCCAGGGAAATGGATCCTTCACTGGGGGGTCCATTATACAGATGACACTGGCAG : TGAATGGGATCAACCTCCTCCAGAGATGCGGCCGTCAGGTTCAATTGCCATAAAG : GATTATGC</gDNA_template>
            <first_frame> S  P  A  K  P  K  A  I  S  K  S  E  E  N  L  S  F  F  S  K  F  L  S  E  A  T  L  R  Y  R  N  F  E  I  L  R  L  S  A  *  P  D  G  T  Y  Q  S  *  L  H  R  C  C  R  H  *  D  V  G  T  V  G  R  S  F  *  G  D  F  L  V  E  T  T  G  K   : G  *  R  K  D  I  H  Q  I  G  *  G  E  G  *  R  E  L  E  P  H  C  G  M  *  F  A  R  E  M  D  P  S  L  G  G  P  L  Y  R  *  H  W  Q  :  *  M  G  S  T  S  S  R  D  A  A  V  R  F  N  C  H  K   : G  L  C </first_frame>
            <second_frame>  L  R  R  S  P  K  L  Y  P  N  Q  K  K  T  S  H  F  S  L  N  F  S  R  R  P  L  S  G  T  A  T  L  R  F  C  D  Y  R  R  S  R  T  V  P  I  R  A  S  S  T  D  A  A  V  I  E  T  S  E  Q  S  D  V  V  F  K  E  T  F  S  L  K  R  P  E  R  :  A  E  G  K  I  S  I  R  L  D  K  G  K  D  E  E  N  W  N  L  T  V  G  C  S  L  P  G  K  W  I  L  H  W  G  V  H  Y  T  D  D  T  G  S :   E  W  D  Q  P  P  P  E  M  R  P  S  G  S  I  A  I  K  :  D  Y   </second_frame>
            <third_frame>   S  G  E  A  Q  S  Y  I  Q  I  R  R  K  P  L  I  F  L  *  I  S  L  G  G  H  S  P  V  P  Q  L  *  D  S  A  I  I  G  V  A  G  R  Y  L  S  E  L  A  P  P  M  L  P  S  L  R  R  R  N  S  R  T  *  F  L  R  R  L  S  R  *  N  D  R  K  G :   L  K  E  R  Y  P  S  D  W  I  R  G  R  M  K  R  I  G  T  S  L  W  D  V  V  C  Q  G  N  G  S  F  T  G  G  S  I  I  Q  M  T  L  A   : V  N  G  I  N  L  L  Q  R  C  G  R  Q  V  Q  L  P  *  R :   I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30029" stop="30256"/>
                    <exon start="30902" stop="31032"/>
                    <exon start="31289" stop="31343"/>
                    <exon start="31496" stop="31501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRSPKLYPNQKKTSHFSLNFSRRPLSGTATLRFCDYRRSRTVPIRASSTDAAVIETSEQSDVVFKETFSLKRPERAEGKISIRLDKGKDEENWNLTVGCSLPGKWILHWGVHYTDDTGSEWDQPPPEMRPSGSIAIKDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="31765" PGL_stop="38828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31765" e_stop="31880"/>
            <exon e_start="32324" e_stop="32673"/>
            <exon e_start="35596" e_stop="36251"/>
            <exon e_start="36892" e_stop="37081"/>
            <exon e_start="38724" e_stop="38828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.293" acc_prob="0.945" e_score="0.931"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.934"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.943"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="31765" e_stop="31880" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.293" acc_prob="0.945">
            <gDNA_intron_boundary i_start="31881" i_stop="32323" i_length="443"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="32324" e_stop="32673" e_length="350"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32674" i_stop="35595" i_length="2922"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="35596" e_stop="36251" e_length="656"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36252" i_stop="36891" i_length="640"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="36892" e_stop="37081" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37082" i_stop="38723" i_length="1642"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38724" e_stop="38828" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31765" stop="31880"/>
              <exon start="32324" stop="32673"/>
              <exon start="35596" stop="35748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35633" stop="36251"/>
              <exon start="36892" stop="37081"/>
              <exon start="38724" stop="38828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7008-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACTGGAGTTTGGTATCAGCACAGAGGGCGGGACTTCAAGATTCCTCTTGTTGACTGCCTTGACAATGATGCTAATATCGTTGGTGTTAAAAAGGAGTCGAACATATGGTCAG : GATCACTAGGAAAGCTGTCCAACATACTCCTTAATCCAGAAGCTTCTCCTTCTAAAGGGGAATCAAGCAGCAATGAGGGGTCTAGTGCGAAAAACTGGCGTCTTGAAGGGTTTTATGAGGAGCATGCCATAGTAAAAGAGACTCTTGTCGATAACATAGTTAATGTCTCTGTTAAGCTGTGTCCAGAGACTGCTAAGAATATTTTGTGTATAGATACTGACTTACCTGGAAATGTAATTCTTCACTGGGGAATCTGCAAAGGTGATACTAAAATATGGGAACTTCCTGCAATGCCATATCCAGCGGAAACAGTAGTGTTCAAGAATAAGGCACTGCGGACTTTGCTGCAG : AGAAAAGAGGGAGGTAATGGTTCTTCGGGACTGTTTACTTTGGATGTAGGACTTGCCGGATTTGTTTTTGTGGTGAAGCTAGATGAAAATACGTGGTTGAATTGTAAGGGAGATGACTTTTATGTACCTCTGTCAAGTGGCACATTACATTTGGAGGAAAGTAAACAAAGCGAGGAGTCAAATTCTTCCCAGATAGTCAATCGTACGCCTGAGGAGAGCCAAATAGGCTCTGTGTATACTGATGAAATAATAAAAGAGATAAGGAGTTTGGTGAGTGACATTTCTTCTGAAAAGAGCCGAAAGACAAAAAATAGGGAAACACAGGAAACCATTCTTCAAGAAATTGAGAAGCTGGCTGCTGAAGCTTATGGTATATTCAGAAGTTCAATCCCAACAATACTAGAAACTGTTGTTTCTGACTCTGAGGTTGTACAACCTGACGTGAAAGTAACTTCAGGAACTGGTACAGGATTTGAAATTTTGTGCCAGGGTTTTAATTGGGAATCTCATAAATCCGGAAGATGGTACAAGGAGCTGCATGATAAAGCTGCAGAGTTATCTTCACTTGGTTTCAGTGTGATCTGGTTACCTCCACCAACTGACTCAGTGTCACCAGAGGGATACATGCCTAGGGATTTATATAACTTAAATTCCAG : ATATGGTAGTTTTGATGAATTGAAAGTTACAGTAAAGAAATTCCATGAAGTGGGCATCAAGGTTCTTGGTGATGTTGTCTTAAATCATAGATGTGCAAGTGAACGGAATCAAAATGGTATATGGAATATCTTTGGTGGTCGGTTAAATTGGGATGAGCGTGCAGTTGTTGCAGATGATCCACATTTCCAG : GGAAGGGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCTAACATTGATCATTCCCAGGAATTCGTGAGAAAGGATATCAGGGAATGGTTACTCTGGCTG</gDNA_template>
            <first_frame> G  N  W  S  L  V  S  A  Q  R  A  G  L  Q  D  S  S  C  *  L  P  *  Q  *  C  *  Y  R  W  C  *  K  G  V  E  H  M  V  R :   I  T  R  K  A  V  Q  H  T  P  *  S  R  S  F  S  F  *  R  G  I  K  Q  Q  *  G  V  *  C  E  K  L  A  S  *  R  V  L  *  G  A  C  H  S  K  R  D  S  C  R  *  H  S  *  C  L  C  *  A  V  S  R  D  C  *  E  Y  F  V  Y  R  Y  *  L  T  W  K  C  N  S  S  L  G  N  L  Q  R  *  Y  *  N  M  G  T  S  C  N  A  I  S  S  G  N  S  S  V  Q  E  *  G  T  A  D  F  A  A   : E  K  R  G  R  *  W  F  F  G  T  V  Y  F  G  C  R  T  C  R  I  C  F  C  G  E  A  R  *  K  Y  V  V  E  L  *  G  R  *  L  L  C  T  S  V  K  W  H  I  T  F  G  G  K  *  T  K  R  G  V  K  F  F  P  D  S  Q  S  Y  A  *  G  E  P  N  R  L  C  V  Y  *  *  N  N  K  R  D  K  E  F  G  E  *  H  F  F  *  K  E  P  K  D  K  K  *  G  N  T  G  N  H  S  S  R  N  *  E  A  G  C  *  S  L  W  Y  I  Q  K  F  N  P  N  N  T  R  N  C  C  F  *  L  *  G  C  T  T  *  R  E  S  N  F  R  N  W  Y  R  I  *  N  F  V  P  G  F  *  L  G  I  S  *  I  R  K  M  V  Q  G  A  A  *  *  S  C  R  V  I  F  T  W  F  Q  C  D  L  V  T  S  T  N  *  L  S  V  T  R  G  I  H  A  *  G  F  I  *  L  K  F  Q  :  I  W  *  F  *  *  I  E  S  Y  S  K  E  I  P  *  S  G  H  Q  G  S  W  *  C  C  L  K  S  *  M  C  K  *  T  E  S  K  W  Y  M  E  Y  L  W  W  S  V  K  L  G  *  A  C  S  C  C  R  *  S  T  F  P   : G  K  G  Q  Q  K  *  W  R  *  F  P  C  C  S  *  H  *  S  F  P  G  I  R  E  K  G  Y  Q  G  M  V  T  L  A  </first_frame>
            <second_frame>  E  T  G  V  W  Y  Q  H  R  G  R  D  F  K  I  P  L  V  D  C  L  D  N  D  A  N  I  V  G  V  K  K  E  S  N  I  W  S   : G  S  L  G  K  L  S  N  I  L  L  N  P  E  A  S  P  S  K  G  E  S  S  S  N  E  G  S  S  A  K  N  W  R  L  E  G  F  Y  E  E  H  A  I  V  K  E  T  L  V  D  N  I  V  N  V  S  V  K  L  C  P  E  T  A  K  N  I  L  C  I  D  T  D  L  P  G  N  V  I  L  H  W  G  I  C  K  G  D  T  K  I  W  E  L  P  A  M  P  Y  P  A  E  T  V  V  F  K  N  K  A  L  R  T  L  L  Q  :  R  K  E  G  G  N  G  S  S  G  L  F  T  L  D  V  G  L  A  G  F  V  F  V  V  K  L  D  E  N  T  W  L  N  C  K  G  D  D  F  Y  V  P  L  S  S  G  T  L  H  L  E  E  S  K  Q  S  E  E  S  N  S  S  Q  I  V  N  R  T  P  E  E  S  Q  I  G  S  V  Y  T  D  E  I  I  K  E  I  R  S  L  V  S  D  I  S  S  E  K  S  R  K  T  K  N  R  E  T  Q  E  T  I  L  Q  E  I  E  K  L  A  A  E  A  Y  G  I  F  R  S  S  I  P  T  I  L  E  T  V  V  S  D  S  E  V  V  Q  P  D  V  K  V  T  S  G  T  G  T  G  F  E  I  L  C  Q  G  F  N  W  E  S  H  K  S  G  R  W  Y  K  E  L  H  D  K  A  A  E  L  S  S  L  G  F  S  V  I  W  L  P  P  P  T  D  S  V  S  P  E  G  Y  M  P  R  D  L  Y  N  L  N  S  R :   Y  G  S  F  D  E  L  K  V  T  V  K  K  F  H  E  V  G  I  K  V  L  G  D  V  V  L  N  H  R  C  A  S  E  R  N  Q  N  G  I  W  N  I  F  G  G  R  L  N  W  D  E  R  A  V  V  A  D  D  P  H  F  Q  :  G  R  G  N  K  S  S  G  D  N  F  H  A  A  P  N  I  D  H  S  Q  E  F  V  R  K  D  I  R  E  W  L  L  W  L </second_frame>
            <third_frame>   K  L  E  F  G  I  S  T  E  G  G  T  S  R  F  L  L  L  T  A  L  T  M  M  L  I  S  L  V  L  K  R  S  R  T  Y  G  Q  :  D  H  *  E  S  C  P  T  Y  S  L  I  Q  K  L  L  L  L  K  G  N  Q  A  A  M  R  G  L  V  R  K  T  G  V  L  K  G  F  M  R  S  M  P  *  *  K  R  L  L  S  I  T  *  L  M  S  L  L  S  C  V  Q  R  L  L  R  I  F  C  V  *  I  L  T  Y  L  E  M  *  F  F  T  G  E  S  A  K  V  I  L  K  Y  G  N  F  L  Q  C  H  I  Q  R  K  Q  *  C  S  R  I  R  H  C  G  L  C  C  R :   E  K  R  E  V  M  V  L  R  D  C  L  L  W  M  *  D  L  P  D  L  F  L  W  *  S  *  M  K  I  R  G  *  I  V  R  E  M  T  F  M  Y  L  C  Q  V  A  H  Y  I  W  R  K  V  N  K  A  R  S  Q  I  L  P  R  *  S  I  V  R  L  R  R  A  K  *  A  L  C  I  L  M  K  *  *  K  R  *  G  V  W  *  V  T  F  L  L  K  R  A  E  R  Q  K  I  G  K  H  R  K  P  F  F  K  K  L  R  S  W  L  L  K  L  M  V  Y  S  E  V  Q  S  Q  Q  Y  *  K  L  L  F  L  T  L  R  L  Y  N  L  T  *  K  *  L  Q  E  L  V  Q  D  L  K  F  C  A  R  V  L  I  G  N  L  I  N  P  E  D  G  T  R  S  C  M  I  K  L  Q  S  Y  L  H  L  V  S  V  *  S  G  Y  L  H  Q  L  T  Q  C  H  Q  R  D  T  C  L  G  I  Y  I  T  *  I  P   : D  M  V  V  L  M  N  *  K  L  Q  *  R  N  S  M  K  W  A  S  R  F  L  V  M  L  S  *  I  I  D  V  Q  V  N  G  I  K  M  V  Y  G  I  S  L  V  V  G  *  I  G  M  S  V  Q  L  L  Q  M  I  H  I  S  R :   E  G  A  T  K  V  V  E  I  I  S  M  L  L  L  T  L  I  I  P  R  N  S  *  E  R  I  S  G  N  G  Y  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31766" stop="31880"/>
                    <exon start="32324" stop="32673"/>
                    <exon start="35596" stop="36251"/>
                    <exon start="36892" stop="37081"/>
                    <exon start="38724" stop="38828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETGVWYQHRGRDFKIPLVDCLDNDANIVGVKKESNIWSGSLGKLSNILLNPEASPSKGESSSNEGSSAKNWRLEGFYEEHAIVKETLVDNIVNVSVKLCPETAKNILCIDTDLPGNVILHWGICKGDTKIWELPAMPYPAETVVFKNKALRTLLQRKEGGNGSSGLFTLDVGLAGFVFVVKLDENTWLNCKGDDFYVPLSSGTLHLEESKQSEESNSSQIVNRTPEESQIGSVYTDEIIKEIRSLVSDISSEKSRKTKNRETQETILQEIEKLAAEAYGIFRSSIPTILETVVSDSEVVQPDVKVTSGTGTGFEILCQGFNWESHKSGRWYKELHDKAAELSSLGFSVIWLPPPTDSVSPEGYMPRDLYNLNSRYGSFDELKVTVKKFHEVGIKVLGDVVLNHRCASERNQNGIWNIFGGRLNWDERAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIREWLLWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="49871" PGL_stop="47265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49871" e_stop="49598"/>
            <exon e_start="49201" e_stop="49146"/>
            <exon e_start="48341" e_stop="48179"/>
            <exon e_start="48063" e_stop="47975"/>
            <exon e_start="47645" e_stop="47513"/>
            <exon e_start="47340" e_stop="47265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.880"/>
          <exon-intron don_prob="0.999" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.880">
            <gDNA_exon_boundary e_start="49871" e_stop="49598" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="49597" i_stop="49202" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49201" e_stop="49146" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.814">
            <gDNA_intron_boundary i_start="49145" i_stop="48342" i_length="804"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48341" e_stop="48179" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.740">
            <gDNA_intron_boundary i_start="48178" i_stop="48064" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48063" e_stop="47975" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47974" i_stop="47646" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47645" e_stop="47513" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.888">
            <gDNA_intron_boundary i_start="47512" i_stop="47341" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47340" e_stop="47265" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49871" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8780-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49839" stop="49598"/>
              <exon start="49201" stop="49146"/>
              <exon start="48341" stop="48179"/>
              <exon start="48063" stop="47975"/>
              <exon start="47645" stop="47513"/>
              <exon start="47340" stop="47265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTCTTCTCTTCATCCACATAACTCCTTAAAAAAACATCAAAAAGAAAATAAAATCTCCATTTTAAGTCACTTCTTCAATTTGAAGAAATTCTCATGTACAATGTCAACAACAATATGGTCATCAATGTTGCCTCAATGGAGATATTGTAACAAGAATTTGCATTATTGGATATTACCACCTTCAAAAACTAAACTTAGCTTCTTTTATTTACCTATTTTATCTTCTTTCACTAATAATAATGATTCTGTATCACCCATCAAACAAAATCAG : GCTATGTATGACCCTTCAGAGGAGCTTTTTGGACTTGATGCTGATTTGCAGCCAAG : GAAGGTCATTTCTAGTTCATCGAGTCCGAGATCATGGTTTGGCCCAAATGGACAGTATATAAGAGAACTGCCTTGTCCAAGCTGCAGAGGAAGAGGCTACACTTCATGTACTGAATGTGGAATCGAGAGATCCAACTTAGATTGTTCGTTGTGTAATGGAAAG : GGTATGATAACTTGTCATCAGTGTGGTGGAGATTGTGTCATTTGGGAAGAGTCTATCGATGAACGGCCTTGGGAGAAAGCTCGATCAAG : TTCACCTTTAAAAGTAAAAGAAGACGATGAAGTGGACGACTTAGACATAAAGCTTGACGCGAAGAGAAAAACCAAGCGTGTCTACCAATCTCCCAACACAGAAGTCAATTTGAAGATCAGCAGATCACTAAAA : TTGGATGATTGCAGAGCCTAAATGCCAAAACTGGATTATTTAGTAAAAGGATGAAGATTATCCATGGCGATCCGAT</gDNA_template>
            <first_frame> A  V  F  S  S  S  T  *  L  L  K  K  T  S  K  R  K  *  N  L  H  F  K  S  L  L  Q  F  E  E  I  L  M  Y  N  V  N  N  N  M  V  I  N  V  A  S  M  E  I  L  *  Q  E  F  A  L  L  D  I  T  T  F  K  N  *  T  *  L  L  L  F  T  Y  F  I  F  F  H  *  *  *  *  F  C  I  T  H  Q  T  K  S   : G  Y  V  *  P  F  R  G  A  F  W  T  *  C  *  F  A  A  K  :  E  G  H  F  *  F  I  E  S  E  I  M  V  W  P  K  W  T  V  Y  K  R  T  A  L  S  K  L  Q  R  K  R  L  H  F  M  Y  *  M  W  N  R  E  I  Q  L  R  L  F  V  V  *  W  K   : G  Y  D  N  L  S  S  V  W  W  R  L  C  H  L  G  R  V  Y  R  *  T  A  L  G  E  S  S  I  K  :  F  T  F  K  S  K  R  R  R  *  S  G  R  L  R  H  K  A  *  R  E  E  K  N  Q  A  C  L  P  I  S  Q  H  R  S  Q  F  E  D  Q  Q  I  T  K   : I  G  *  L  Q  S  L  N  A  K  T  G  L  F  S  K  R  M  K  I  I  H  G  D  P   </first_frame>
            <second_frame>  L  S  S  L  H  P  H  N  S  L  K  K  H  Q  K  E  N  K  I  S  I  L  S  H  F  F  N  L  K  K  F  S  C  T  M  S  T  T  I  W  S  S  M  L  P  Q  W  R  Y  C  N  K  N  L  H  Y  W  I  L  P  P  S  K  T  K  L  S  F  F  Y  L  P  I  L  S  S  F  T  N  N  N  D  S  V  S  P  I  K  Q  N  Q  :  A  M  Y  D  P  S  E  E  L  F  G  L  D  A  D  L  Q  P  R :   K  V  I  S  S  S  S  S  P  R  S  W  F  G  P  N  G  Q  Y  I  R  E  L  P  C  P  S  C  R  G  R  G  Y  T  S  C  T  E  C  G  I  E  R  S  N  L  D  C  S  L  C  N  G  K  :  G  M  I  T  C  H  Q  C  G  G  D  C  V  I  W  E  E  S  I  D  E  R  P  W  E  K  A  R  S  S :   S  P  L  K  V  K  E  D  D  E  V  D  D  L  D  I  K  L  D  A  K  R  K  T  K  R  V  Y  Q  S  P  N  T  E  V  N  L  K  I  S  R  S  L  K  :  L  D  D  C  R  A  *  M  P  K  L  D  Y  L  V  K  G  *  R  L  S  M  A  I  R  </second_frame>
            <third_frame>   C  L  L  F  I  H  I  T  P  *  K  N  I  K  K  K  I  K  S  P  F  *  V  T  S  S  I  *  R  N  S  H  V  Q  C  Q  Q  Q  Y  G  H  Q  C  C  L  N  G  D  I  V  T  R  I  C  I  I  G  Y  Y  H  L  Q  K  L  N  L  A  S  F  I  Y  L  F  Y  L  L  S  L  I  I  M  I  L  Y  H  P  S  N  K  I  R :   L  C  M  T  L  Q  R  S  F  L  D  L  M  L  I  C  S  Q   : G  R  S  F  L  V  H  R  V  R  D  H  G  L  A  Q  M  D  S  I  *  E  N  C  L  V  Q  A  A  E  E  E  A  T  L  H  V  L  N  V  E  S  R  D  P  T  *  I  V  R  C  V  M  E  R :   V  *  *  L  V  I  S  V  V  E  I  V  S  F  G  K  S  L  S  M  N  G  L  G  R  K  L  D  Q   : V  H  L  *  K  *  K  K  T  M  K  W  T  T  *  T  *  S  L  T  R  R  E  K  P  S  V  S  T  N  L  P  T  Q  K  S  I  *  R  S  A  D  H  *  N :   W  M  I  A  E  P  K  C  Q  N  W  I  I  *  *  K  D  E  D  Y  P  W  R  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0058L13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49870" stop="49598"/>
                    <exon start="49201" stop="49146"/>
                    <exon start="48341" stop="48179"/>
                    <exon start="48063" stop="47975"/>
                    <exon start="47645" stop="47513"/>
                    <exon start="47340" stop="47320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSLHPHNSLKKHQKENKISILSHFFNLKKFSCTMSTTIWSSMLPQWRYCNKNLHYWILPPSKTKLSFFYLPILSSFTNNNDSVSPIKQNQAMYDPSEELFGLDADLQPRKVISSSSSPRSWFGPNGQYIRELPCPSCRGRGYTSCTECGIERSNLDCSLCNGKGMITCHQCGGDCVIWEESIDERPWEKARSSSPLKVKEDDEVDDLDIKLDAKRKTKRVYQSPNTEVNLKISRSLKLDDCRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 16216 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2316 bytes was the average size of a spliced alignment
$ 9632 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2408 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:59:23
-->
