<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:50:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315018" ref_strand="+" ref_description="SGN-E315018 [cTOB-4-E22]">
      <seq>gaaaaaaatgggcaaaaacactgaacaagaagaagagtttttattgaatcactcacaaaattcaacaaagggaggtttaaaaaccattcctttcatcatagtgaatgaatcatgtgagagattggcaagttttggtttgcaaccaaatatgataatctacataacaaaattttacaacattaatgctgctcatgcttcagttttgattaatttatggtcagcagtttcaaatgtattgtctattttgggagcttttatttctgattcttacattggaaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaagccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcagcacaacttgctgcaattttgtgttcttttgggcttatttccattggtgctggttttgttagaccttgttccattgcattgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2348" stop="3610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2654" g_stop="2726" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="101" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2727" i_stop="2812" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2813" g_stop="3030" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="319" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3031" i_stop="3132" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3133" g_stop="3310" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="497" r_length="178" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E315018" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2654" e_stop="2726"/>
          <exon e_start="2813" e_stop="3030"/>
          <exon e_start="3133" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAATTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAGGTATGTGTAAATTGTAACAATTTTGTCTTCTCACTTTACTCTTTGTTTGTAATTTTGTTTAATTGATTCATTGTGTTGCATTGTAGTGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATTTTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTCTTGTTAGACCTTGTTCCATAGCATTGGGTG</genome_strand>
        <mrna_strand>GAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG......................................................................................TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAAGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315019" ref_strand="+" ref_description="SGN-E315019 [cTOB-4-E24]">
      <seq>gaaaaatttgggcataaacactgaacaagaagaagagtttttattgaatcactcacaaaattcaacaaagggaggtttaaaaaccattcctttcatcatagtgaatgaatcatgtgagagattggcaagttttggtttgcaaccaaatatgataatctacataacaaaattttacaacattaatgctgctcatgcttcagttttgattaatttatggtcagcagtttcaaatgtattgtctattttgggagcttttatttctgattcttacattggaaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaggccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcaccacaacttgctgcaattttgtgttcttttgggcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2348" stop="3563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2654" g_stop="2726" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="101" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2727" i_stop="2812" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2813" g_stop="3030" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="319" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3031" i_stop="3132" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3133" g_stop="3263" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="450" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E315019" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2654" e_stop="2726"/>
          <exon e_start="2813" e_stop="3030"/>
          <exon e_start="3133" e_stop="3263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAATTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAGGTATGTGTAAATTGTAACAATTTTGTCTTCTCACTTTACTCTTTGTTTGTAATTTTGTTTAATTGATTCATTGTGTTGCATTGTAGTGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATTTTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTAT</genome_strand>
        <mrna_strand>GAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG......................................................................................TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCACCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338968" ref_strand="+" ref_description="SGN-E338968 [cTOF-6-G15]">
      <seq>aaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaggccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcagcacaacttgctgcaattttgtgttcttttgggcttatttccattggtgctggttttgttagaccttgttccattgcattgggtgcagaccaattgggtaacaaagaaaatctagataatgagagacttctggatagctatttcagttggttctatgcaagtgtcggagtttcaattgttcttgcagttactgtaattgtttatatccaagatcattttggttggcaagttgggtttggtgtccctgctttgctcatggttttatctgtttccgttttcttggttggatctcctcattatatcaaagcaaagcctgaaggtagtttgttcactggattgtttcaagtagcagtcgcagccttcagaaaaagacatatcaacgttcaattgaattataatgacgactcctactataaagcacctgaatcaaagctcctcgaaccatccactgacttcaggtgtttgaatagagcttgcataattgaagatcctaacatggagttgaaacctgatggaaaagcttcagatccatggagtctctgctctgtggaacaagtcaaataatgaagtgttttcttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2688" stop="4188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2988" g_stop="3030" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3031" i_stop="3132" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3133" g_stop="3683" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="594" r_length="551" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3684" i_stop="3763" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3764" g_stop="3888" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="718" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E338968" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2988" e_stop="3030"/>
          <exon e_start="3133" e_stop="3683"/>
          <exon e_start="3764" e_stop="3888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATTTTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTCTTGTTAGACCTTGTTCCATAGCATTGGGTGCCGACCAATTGGAGAACAAAGAAAATCCAGATAACGAGAGACTTATGGATAGCTATTTCAATTGGTTCTATGCCAGTATCGGAGTTGCAATTGTTTTTGCAGTTACTGTAATTGTTTATATCCAAGACCATTTTGGTTGGCAAGTTGGGTTTGGTGTTCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGATTGGATCTCCTCATTATATCAAAGCAAAACCTAAAGGGAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAACACCTGAATCAAAGCTCCTCGAACCATCCACGGACTTCAGGTATATGTGTCTCCATCTTTTCCTCAATGGTATAGACATCATCAATATCTATTCGTGATTCATTGTATATTATATTATAGGTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCG</genome_strand>
        <mrna_strand>AAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGTTACTGTAATTGTTTATATCCAAGATCATTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG................................................................................GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTC-AAATAATGAAGTGTTTTCTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295136" ref_strand="+" ref_description="SGN-E295136 [cLET-20-K20]">
      <seq>tgcggtcaatattaacatgattgctatggaacaacagcagcgcaacttgctgcaattttgtgttcttttgggcttatttccattggcgctggatttgttagaccttgttccattgcattgggtgcagaccaattgggtaacaaagaaaatctagataatgagagacttctggatagctatttcagttggttctatgcaagtgtcggagtttcaattgttcttgcaggtactgtaattgtttatatccaagatcattttggctggcaagttgggtttggtgtccctgctttgctcatgggtctatctgtttccgttatcttggttggatctcctcattatatgaaagcaaagcctgaaggtagtttgttcactggattgtttcaagtagcaggcgctgtcttcagaaaaagacaggtcaacgttcaattgaattatggtgacgactcctacctataaagcaccctgaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2887" stop="3957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3187" g_stop="3657" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E295136" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3187" e_stop="3657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTCTTGTTAGACCTTGTTCCATAGCATTGGGTGCCGACCAATTGGAGAACAAAGAAAATCCAGATAACGAGAGACTTATGGATAGCTATTTCAATTGGTTCTATGCCAGTATCGGAGTTGCAATTGTTTTTGCAGTTACTGTAATTGTTTATATCCAAGACCATTTTGGTTGGCAAGTTGGGTTTGGTGTTCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGATTGGATCTCCTCATTATATCAAAGCAAAACCTAAAGGGAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTA-CTATAAAACA-CCTGAATCAAAG</genome_strand>
        <mrna_strand>TGCGGTCAATATTAACATGATTGCTATGGAACAACAGCAGCGCAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGCGCTGGATTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGGTACTGTAATTGTTTATATCCAAGATCATTTTGGCTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGGTCTATCTGTTTCCGTTATCTTGGTTGGATCTCCTCATTATATGAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGGCGCTGTCTTCAGAAAAAGACAGGTCAACGTTCAATTGAATTATGGTGACGACTCCTACCTATAAAGCACCCTGAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704423" ref_strand="+" ref_description="SGN-E704423 [FA24BA07]">
      <seq>cataattgaagatcctcacgtggagttgaaacctgatggaaaagcttcagatccgtggagtctctgctttgtggaacaagtcgaaataatgaagtgttttcttagagttcttcccatgtggtccacctgtattatgcttcttgtgtcgttcggtcagccactttcgatatatcaactattgaccgtggatagacacattactcctcagtttgaaatcccagcaggatcattcggcatgattaccgttttttctttgacaatctggatggctttttacgatcgtgcagtggttcctttactgtctaggtatactggactgtcgactgggataagtccattttccagaatggggattggcttatttctgggcattgtgggtacgacactttcagctataacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactatacggggtggctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccggcttaattaacagtctcttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatctagattactactgctggctaataactttcttatgtgtgattaacttcctctattttttagccgtttgtcgattcactgatcagcatcaccatgatggtaggagtagcttatttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="7099" stop="5666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6799" g_stop="5964" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E704423" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6799" e_stop="5964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTATCGTTCAGTCAACCACTATCGATATATCAACTACTGACCGTGGATAGACACATTACCCCTCGGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACTGTTCTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCATTGGTTCCTTTACTGTCAAGGTATACTGGACTGCCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTAGCTACAGTACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATGAATGCAGGGTTTGAGGATGACCCAAATGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTCTGAATGTGGTTGGACAGATTGAGTTCATATACAGTCTATTTCCAAAAACGATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTTGCGCTTTCCAACTTAATTAGTAGTCTCTTGGTGAGCGTGGTGGATAATATTACCTCAGCCAGATGCAACACAAGCTGGCTCGCGACCAACATAAATAGAGGTCACCTAGATTACTACTGCTGGCTAATGACTTTCTTATGTGTGATTAACTTCCTCTATTTTCTAGCTGTTTGTCGGTTTACTGATAAGCAAAAACATGATGGTAGGAGTAGCTTATTTCCTGAGG</genome_strand>
        <mrna_strand>CATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707271" ref_strand="+" ref_description="SGN-E707271 [FA32CB06]">
      <seq>gcatgttgggtttggtgtccctgctttgctcatggttttatctgtttccgtttatttaattggatctcctctttatataaaaccaaaatctgaagggagtttgttcactggattatttcaagtagcagtcgcagccttcagaaaaagacatattaatgttcagttgaattataatgacgactgctactataaagcacctgaatcaaagctcctcgaaccatccactgacttcaggtgtttgaatagagcttgcataattgaagatcctcacgtggagttgaaacctgatggaaaagcttcagatccgtggagtctctgctttgtggaacaagtcgaaataatgaagtgttttcttagagttcttcccatgtggtccacctgtattatgcttcttgtgtcgttcggtcagccactttcgatatatcaactattgaccgtggatagacacattactcctcagtttgaaatcccagcaggatcattcggcatgattaccgttttttctttgacaatctggatggctttttacgatcgtgcagtggttcctttactgtctaggtatactggactgtcgactgggataagtccattttccagaatggggattggcttatttctgggcattgtgggtacgacactttcagctataacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactatacggggtggctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccgggcttattaacagtctcttggtgagcgtggtggatagtactacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="7431" stop="5833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7131" g_stop="6898" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6897" i_stop="6818" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6817" g_stop="6133" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="919" r_length="685" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E707271" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7131" e_stop="6898"/>
          <exon e_start="6817" e_stop="6133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAGGTATACGTGCCTCCATCTTTTCCTCAATGGTATAGACATCATCAATATCTATTCGTGATTCATTGTATATTATATTATAGGTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTATCGTTCAGTCAACCACTATCGATATATCAACTACTGACCGTGGATAGACACATTACCCCTCGGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACTGTTCTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCATTGGTTCCTTTACTGTCAAGGTATACTGGACTGCCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTAGCTACAGTACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATGAATGCAGGGTTTGAGGATGACCCAAATGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTCTGAATGTGGTTGGACAGATTGAGTTCATATACAGTCTATTTCCAAAAACGATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTTGCGCTTTCCAACTTAATTAGTAGTCTCTTGGTGAGCGTGGTGGATAATATTACCTCA</genome_strand>
        <mrna_strand>GCATGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTGAAGGGAGTTTGTTCACTGGATTATTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATTAATGTTCAGTTGAATTATAATGACGACTGCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG................................................................................GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGGCTTATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338968" ref_strand="+" ref_description="SGN-E338968 [cTOF-6-G15]">
      <seq>aaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaggccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcagcacaacttgctgcaattttgtgttcttttgggcttatttccattggtgctggttttgttagaccttgttccattgcattgggtgcagaccaattgggtaacaaagaaaatctagataatgagagacttctggatagctatttcagttggttctatgcaagtgtcggagtttcaattgttcttgcagttactgtaattgtttatatccaagatcattttggttggcaagttgggtttggtgtccctgctttgctcatggttttatctgtttccgttttcttggttggatctcctcattatatcaaagcaaagcctgaaggtagtttgttcactggattgtttcaagtagcagtcgcagccttcagaaaaagacatatcaacgttcaattgaattataatgacgactcctactataaagcacctgaatcaaagctcctcgaaccatccactgacttcaggtgtttgaatagagcttgcataattgaagatcctaacatggagttgaaacctgatggaaaagcttcagatccatggagtctctgctctgtggaacaagtcaaataatgaagtgttttcttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="7893" stop="6393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7593" g_stop="7551" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7550" i_stop="7449" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="6898" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="594" r_length="551" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6897" i_stop="6818" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6817" g_stop="6693" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="718" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E338968" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7593" e_stop="7551"/>
          <exon e_start="7448" e_stop="6898"/>
          <exon e_start="6817" e_stop="6693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGTTACTGTAATTGTTTATATCCAAGATCATTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAGGTATACGTGCCTCCATCTTTTCCTCAATGGTATAGACATCATCAATATCTATTCGTGATTCATTGTATATTATATTATAGGTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCG</genome_strand>
        <mrna_strand>AAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGTTACTGTAATTGTTTATATCCAAGATCATTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG................................................................................GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTC-AAATAATGAAGTGTTTTCTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295136" ref_strand="+" ref_description="SGN-E295136 [cLET-20-K20]">
      <seq>tgcggtcaatattaacatgattgctatggaacaacagcagcgcaacttgctgcaattttgtgttcttttgggcttatttccattggcgctggatttgttagaccttgttccattgcattgggtgcagaccaattgggtaacaaagaaaatctagataatgagagacttctggatagctatttcagttggttctatgcaagtgtcggagtttcaattgttcttgcaggtactgtaattgtttatatccaagatcattttggctggcaagttgggtttggtgtccctgctttgctcatgggtctatctgtttccgttatcttggttggatctcctcattatatgaaagcaaagcctgaaggtagtttgttcactggattgtttcaagtagcaggcgctgtcttcagaaaaagacaggtcaacgttcaattgaattatggtgacgactcctacctataaagcaccctgaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="7694" stop="6624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7394" g_stop="6924" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E295136" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7394" e_stop="6924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGTTACTGTAATTGTTTATATCCAAGATCATTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTA-CTATAAAGCA-CCTGAATCAAAG</genome_strand>
        <mrna_strand>TGCGGTCAATATTAACATGATTGCTATGGAACAACAGCAGCGCAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGCGCTGGATTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGGTACTGTAATTGTTTATATCCAAGATCATTTTGGCTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGGTCTATCTGTTTCCGTTATCTTGGTTGGATCTCCTCATTATATGAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGGCGCTGTCTTCAGAAAAAGACAGGTCAACGTTCAATTGAATTATGGTGACGACTCCTACCTATAAAGCACCCTGAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315018" ref_strand="+" ref_description="SGN-E315018 [cTOB-4-E22]">
      <seq>gaaaaaaatgggcaaaaacactgaacaagaagaagagtttttattgaatcactcacaaaattcaacaaagggaggtttaaaaaccattcctttcatcatagtgaatgaatcatgtgagagattggcaagttttggtttgcaaccaaatatgataatctacataacaaaattttacaacattaatgctgctcatgcttcagttttgattaatttatggtcagcagtttcaaatgtattgtctattttgggagcttttatttctgattcttacattggaaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaagccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcagcacaacttgctgcaattttgtgttcttttgggcttatttccattggtgctggttttgttagaccttgttccattgcattgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8254" stop="6971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7954" g_stop="7854" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7853" i_stop="7769" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7768" g_stop="7551" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="319" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7550" i_stop="7449" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7448" g_stop="7271" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="497" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E315018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7954" e_stop="7854"/>
          <exon e_start="7768" e_stop="7551"/>
          <exon e_start="7448" e_stop="7271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAATGGGCAAAAACACTGAACAAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAGGTATGTGTAAATTGTAACAATTTTGTCTTCTCACTTTACTCTTTGTTTGTAATTTGTTTAATTGATTCATTGTGTTGTATTGTAGTGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTG</genome_strand>
        <mrna_strand>GAAAAAAATGGGCAAAAACACTGAACAAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG.....................................................................................TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAAGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315019" ref_strand="+" ref_description="SGN-E315019 [cTOB-4-E24]">
      <seq>gaaaaatttgggcataaacactgaacaagaagaagagtttttattgaatcactcacaaaattcaacaaagggaggtttaaaaaccattcctttcatcatagtgaatgaatcatgtgagagattggcaagttttggtttgcaaccaaatatgataatctacataacaaaattttacaacattaatgctgctcatgcttcagttttgattaatttatggtcagcagtttcaaatgtattgtctattttgggagcttttatttctgattcttacattggaaggtttagggctgtggctattggaaccatctctagcctaataggaatgcttgttctttggctcacaacaatatttccacaactcaggccgttaccctgcggtcagtatcaacatgattgtaatggaacaacagcaccacaacttgctgcaattttgtgttcttttgggcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8254" stop="7018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7954" g_stop="7854" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7853" i_stop="7769" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7768" g_stop="7551" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="319" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7550" i_stop="7449" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7448" g_stop="7318" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="450" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E315019" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7954" e_stop="7854"/>
          <exon e_start="7768" e_stop="7551"/>
          <exon e_start="7448" e_stop="7318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAATGGGCAAAAACACTGAACAAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAGGTATGTGTAAATTGTAACAATTTTGTCTTCTCACTTTACTCTTTGTTTGTAATTTGTTTAATTGATTCATTGTGTTGTATTGTAGTGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTAT</genome_strand>
        <mrna_strand>GAAAAATTTGGGCATAAACACTGAACAAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG.....................................................................................TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA......................................................................................................GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCACCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329397" ref_strand="+" ref_description="SGN-E329397 [cTOD-2-N19]">
      <seq>aacaaggaagaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccctgtggtcagtatcaacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8230" stop="7074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7928" g_stop="7854" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="108" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7853" i_stop="7769" i_length="85">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7768" g_stop="7551" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="326" r_length="218" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7550" i_stop="7449" i_length="102">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7448" g_stop="7374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="401" r_length="75" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E329397" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7928" e_stop="7854"/>
          <exon e_start="7768" e_stop="7551"/>
          <exon e_start="7448" e_stop="7374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAGGTATGTGTAAATTGTAACAATTTTGTCTTCTCACTTTACTCTTTGTTTGTAATTTGTTTAATTGATTCATTGTGTTGTATTGTAGTGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATAGTAAGTTTAATTTGCCCTGTTTTTTTAATTCTTGTAAAGATTAGAAACTTGACATATTCAAAACTCTCTTGTGTTATACAACTTTATTCTTTTGGCCTACAGGGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGAT</genome_strand>
        <mrna_strand>AAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG.....................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT......................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318201" ref_strand="+" ref_description="SGN-E318201 [cTOA-29-P19]">
      <seq>tttttagcatgcatatacatttatttatctctcaaaaacttctctctttcttccactctctttggagttaacaaggaagaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccctgtggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgttagaccttgttcagtagcatttggtgctgatcaattagagaacaacgaaatccagataatgagagagttatggatacctatttcaactggttttatgctagtgtaggaaatttcatctctggtgcaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12954" stop="14455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13254" g_stop="13430" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="395" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14155" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="679" r_length="284" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E318201" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13254" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAGCATGCATATACATTTATTTATCTCTCAAAAACTTCTCTCTTTCTTCCACTCTCTTTGGAGTTAACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACT</genome_strand>
        <mrna_strand>TTTTTAGCATGCATATACATTTATTTATCTCTCAAAAACTTCTCTCTTTCTTCCACTCTCTTTGGAGTTAACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAAC-AACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAAATTTCATCTCTGGTGCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329397" ref_strand="+" ref_description="SGN-E329397 [cTOD-2-N19]">
      <seq>aacaaggaagaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccctgtggtcagtatcaacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13023" stop="14245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13323" g_stop="13430" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="326" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="13945" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="401" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E329397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13323" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="13945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGAT</genome_strand>
        <mrna_strand>AACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709736" ref_strand="+" ref_description="SGN-E709736 [FA52DH08]">
      <seq>caaggaagaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccctgtggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgttagaccttgttcagtagcatttggtgctgatcaattagagaacaaacgaaatccagataatgagagagttatggatacctatttcaactggttttatgctagtgtaggaatttcaatctctgttgcaattactgtaattgtttatatccaagtgcagtttggttggcaagttgggtttggtgtcccctgctttgctcatggttttatctgtttccgtttatttaattggatctcctctttatataaaaccaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13025" stop="14579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13325" g_stop="13430" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="324" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14279" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="734" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E709736" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13325" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGT-CCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTG</genome_strand>
        <mrna_strand>CAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGTCCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322344" ref_strand="+" ref_description="SGN-E322344 [cTOB-24-O12]">
      <seq>gaagaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccctgtggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgttagaccttgttcagtagcatttggtgctgatcaattagagaacaaacgaaatccagataatgagagagttatggatacctatttcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13029" stop="15595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13329" g_stop="13430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="320" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14106" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="556" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14107" i_stop="15213" i_length="1107">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15214" g_stop="15295" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="638" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E322344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13329" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14106"/>
          <exon e_start="15214" e_stop="15295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTGAAGGGAGTTTGTTCACTGGATTATTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATTAATGTTCAGTTGAATTATAATGACGACTGCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAGGTATGTAGACATCTTCAATGTCCATTCGTGTGCTTACTATTATAGAATATTTGTTTTACTGACTTGTATTACATGAAATTGTCCAATGCATTTAGTTAAGCAAATGATTAGTGTGTTTAAGGGTCTTCGTTTACCCATCTCATACTCATTTTCGTTTGGCATTTATCGAAGGAAATGAAGAGTTCAAAATAGATACTTGAAGGGTGTGTATAGTAAAATTTTTCCATGTTTGGTTGGTTTGATTTTTCGAGAAAATATTTTTCTAGATAAACAAATAAAGAAAATGTCTTTCCTGATGGAGGTAAGGGAAAACAAGTTACACTTTGATTCATTCGTTCGTTGTATATTGTAGGTGTTTGAATAGAGCTTGCATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATA</genome_strand>
        <mrna_strand>GAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390293" ref_strand="+" ref_description="SGN-E390293 [TUS-40-O17]">
      <seq>agaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccccctggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgttagaccttgttcagtagcatttggtgctgatcaattagagaacaaacgaaatccagataatgagagagttatggatacctatttcaactggttttatgctagtgtaggaatttcaatctctgttgcaattactgtaattgtttatatccaagtgcagtttggttgnngcagttgggtttggtgtccctgctttgctcatggttttatctgtttccctttatttaattggatctcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13031" stop="14560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13331" g_stop="13430" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="318" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14260" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="709" r_length="391" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E390293" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13331" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGC-AAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTT</genome_strand>
        <mrna_strand>AGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCCCTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGNNGCAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCCTTTATTTAATTGGATCTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396160" ref_strand="+" ref_description="SGN-E396160 [TUS-39-P18]">
      <seq>agaaagaaaatggggaataaaccagaagaagaagagtttttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccccctggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgttagaccttgttcagtagcatttggtgctgatcaattagagaacaaacgaaatccagataatgagagagttatggatacctatttcaactggttttatgctagtgtaggaatttcaatctctgttgcaattactgtaattgtttatatccaagtgcagtttggttggcaagttgggtttggtgtccctgctttgctcatggttttatctgtttccgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13031" stop="14541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13331" g_stop="13430" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="318" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14241" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="689" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E396160" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13331" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTA</genome_strand>
        <mrna_strand>AGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCCCTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318649" ref_strand="+" ref_description="SGN-E318649 [cTOB-9-N2]">
      <seq>ttactaaatcactcacaaaattcaacaaagggtggtgtaaaaaccattcctttcattatagtgaatgaatcatgtgagagagtagcaagttttggtttgcaaccaaacatgatactctatataacaaaattttacaacatggatgctgctcgtgcttcagttttgttgaatttatggtcagcactttcaaatggattggctatttttggggcttttatttctgattcttacattggaagatttagggctattgctattggaactatctccagtctaattggaatgatacttctttggctcactacaatatttccacaactcaggccgttaccccctggtcagtatcaacttgattgtaacgcagcaacatcaacgcaacttgctgtaattttgtgttcttttgggcttattgccattggtgctggttttgctagaccttgttcagtagcatttggtgctgatcaattagagaacaaacgaaatccagataatgagagagttatggatacctatttcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13070" stop="14411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13370" g_stop="13430" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13517" g_stop="13734" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="279" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13871" g_stop="14111" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="520" r_length="241" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E318649" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13370" e_stop="13430"/>
          <exon e_start="13517" e_stop="13734"/>
          <exon e_start="13871" e_stop="14111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAGGTATATTTGTTTTCTTCTTTTGCTCTTTTCTTATTTCTTAGCTTGTTTCATTGTGTCACATAGTTTTTTTTTTTTTTTTTTTGTAGTGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATTGTAAGTTCACTTGCACAATTTGTCGTGTTAAAATCGCAAATTTAAGATCTGATTGGGTATATGCAAACAACAATTAAATTATCACAACTTTAAGTTGTAGACTTAGTACTGTTTATTCCTTTTATCATCTCATCAGGGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACT</genome_strand>
        <mrna_strand>TTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG......................................................................................TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT........................................................................................................................................GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCCCTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGCTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707271" ref_strand="+" ref_description="SGN-E707271 [FA32CB06]">
      <seq>gcatgttgggtttggtgtccctgctttgctcatggttttatctgtttccgtttatttaattggatctcctctttatataaaaccaaaatctgaagggagtttgttcactggattatttcaagtagcagtcgcagccttcagaaaaagacatattaatgttcagttgaattataatgacgactgctactataaagcacctgaatcaaagctcctcgaaccatccactgacttcaggtgtttgaatagagcttgcataattgaagatcctcacgtggagttgaaacctgatggaaaagcttcagatccgtggagtctctgctttgtggaacaagtcgaaataatgaagtgttttcttagagttcttcccatgtggtccacctgtattatgcttcttgtgtcgttcggtcagccactttcgatatatcaactattgaccgtggatagacacattactcctcagtttgaaatcccagcaggatcattcggcatgattaccgttttttctttgacaatctggatggctttttacgatcgtgcagtggttcctttactgtctaggtatactggactgtcgactgggataagtccattttccagaatggggattggcttatttctgggcattgtgggtacgacactttcagctataacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactatacggggtggctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccgggcttattaacagtctcttggtgagcgtggtggatagtactacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13888" stop="15758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14188" g_stop="14421" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14422" i_stop="14773" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14774" g_stop="15458" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="919" r_length="685" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E707271" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14188" e_stop="14421"/>
          <exon e_start="14774" e_stop="15458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTGAAGGGAGTTTGTTCACTGGATTATTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATTAATGTTCAGTTGAATTATAATGACGACTGCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAGGTATGTAGACATCTTCAATGTCCATTCGTGTGCTTACTATTATAGAATATTTGTTTTACTGACTTGTATTACATGAAATTGTCCAATGCATTTAGTTAAGCAAATGATTAGTGTGTTTAAGGGTCTTCGTTTACCCATCTCATACTCATTTTCGTTTGGCATTTATCGAAGGAAATGAAGAGTTCAAAATAGATACTTGAAGGGTGTGTATAGTAAAATTTTTCCATGTTTGGTTGGTTTGATTTTTCGAGAAAATATTTTTCTAGATAAACAAATAAAGAAAATGTCTTTCCTGATGGAGGTAAGGGAAAACAAGTTACACTTTGATTCATTCGTTCGTTGTATATTGTAGGTGTTTGAATAGAGCTTGCATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCA</genome_strand>
        <mrna_strand>GCATGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTGAAGGGAGTTTGTTCACTGGATTATTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATTAATGTTCAGTTGAATTATAATGACGACTGCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGGCTTATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704423" ref_strand="+" ref_description="SGN-E704423 [FA24BA07]">
      <seq>cataattgaagatcctcacgtggagttgaaacctgatggaaaagcttcagatccgtggagtctctgctttgtggaacaagtcgaaataatgaagtgttttcttagagttcttcccatgtggtccacctgtattatgcttcttgtgtcgttcggtcagccactttcgatatatcaactattgaccgtggatagacacattactcctcagtttgaaatcccagcaggatcattcggcatgattaccgttttttctttgacaatctggatggctttttacgatcgtgcagtggttcctttactgtctaggtatactggactgtcgactgggataagtccattttccagaatggggattggcttatttctgggcattgtgggtacgacactttcagctataacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactatacggggtggctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccggcttaattaacagtctcttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatctagattactactgctggctaataactttcttatgtgtgattaacttcctctattttttagccgtttgtcgattcactgatcagcatcaccatgatggtaggagtagcttatttcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14492" stop="15927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14792" g_stop="15627" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E704423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14792" e_stop="15627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATG</genome_strand>
        <mrna_strand>CATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390454" ref_strand="+" ref_description="SGN-E390454 [TUS-39-P18](-)">
      <seq>gggcattgtgggtacgacactttcagctataacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctctatgtggtttgtaccacagttggcactatacggggtggctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccggcttaattaacagtctcttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatttagattactactgctggctaataacttttttatgtgtgattaacttcctctattttttagccgtttgtcgattcactgatcagcatccccatgatggtaggagtagcttatttcctgatgcagaagaggaacactttgagaataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaactttttttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaacctcacacatatgtcaataaaatttttagttgatgagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14858" stop="16127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15158" g_stop="15826" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="701"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E390454" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15158" e_stop="15826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGT</genome_strand>
        <mrna_strand>GGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATTTAGATTACTACTGCTGGCTAATAACTTTTTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCCCCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTTTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTTTTTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390292" ref_strand="+" ref_description="SGN-E390292 [TUS-40-O17](-)">
      <seq>aacagaaaccatacgacgcaataaggcaatcaacgcagggtttgaggatgatccgaacgctgtgttaaacatgtcctttatgtggtttgtaccacagttggcactatacggggtgggtgaggctttgaatgtggttggacagatcgagtttatatatagtttatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccgggttaattaacagttttttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatttagattactactgctgggtaataacttttttatgtgtgattaacttcctttattttttagccgtttgtcgattcactgatcagcatccccatgatggtaggagtagcttatttcctgatgcagaagaggaacactttgagaataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaactttttttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaacctcacacatatgtcaataaaatttttagttgatgagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14888" stop="16127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15188" g_stop="15826" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="671"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E390292" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15188" e_stop="15826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGT</genome_strand>
        <mrna_strand>AACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTTTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGGTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTTTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGGTTAATTAACAGTTTTTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATTTAGATTACTACTGCTGGGTAATAACTTTTTTATGTGTGATTAACTTCCTTTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCCCCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTTTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTTTTTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355134" ref_strand="+" ref_description="SGN-E355134 [cTOS-18-C1]">
      <seq>gctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccggcttaattaacagtctcttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatctagattactactgctggctaataactttcttatgtgtgattaacttcctctattttttagccgtttgtcgattcactgatcagcatcaccatgatggtaggagtagcttatttcctgatgcagaagaggaacactctgagaataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaacttctcttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaacctcacacatatgtcaataaaatttttagttgatgagtattatttttcctgatagctggggttaagtacgttaaccagtaaaaatgaatggatagactatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15003" stop="16195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15303" g_stop="15892" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="600"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E355134" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15303" e_stop="15892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAA</genome_strand>
        <mrna_strand>GCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCCTGATAGCTGGGGTTAAGTACGTTAACCAGTAAAAATGAATGGATAGACTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356611" ref_strand="+" ref_description="SGN-E356611 [cTOS-21-L7]">
      <seq>gctgaggctttgaatgtggttggacagatcgagtttatatatagtctatttccaaaaaccatgtccagctttgcagcagctctttacacgtttggcctagcgcttgccggcttaattaacagtctcttggtgagcgtggtggatagtactacctcagctggaggcaacacaagttggctcgccacaaacataaacagaggtcatctagattactactgctggctaataactttcttatgtgtgattaacttcctctattttttagccgtttgtcgattcactgatcagcatcaccatgatggtaggagtagcttatttcctgatgcagaagaggaacactctgagaataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaacttctcttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaacctcacacatatgtcaataaaatttttagttgatgagtattatttttcttgatagctgtggtaagttagtttaaccagtaaaaatgaatggatagattatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15003" stop="16195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15303" g_stop="15892" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E356611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15303" e_stop="15892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAA</genome_strand>
        <mrna_strand>GCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGGTAAGTTAGTTTAACCAGTAAAAATGAATGGATAGATTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215949" ref_strand="+" ref_description="SGN-E215949 [cLEL-13-C13](-)">
      <seq>agccgtttgtcgattcactgatcagcatcaccatgatggtaggagtagcttatttcctgatgcagaagaggaacactctaagaataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaacttctcttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaactctcacacatatgtcaataaaatttttagttgatgagtattatttttcttgatagctgtgttaagttagtttaacaagtaaaaatgaatggatagattatgtaaatatccatttgtgtggatttatttattaaatatttcttaattttgtttctattgttatttgtcatttttgacaaatcaagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15266" stop="16281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15566" g_stop="15974" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="427"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E215949" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15566" e_stop="15974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAAC-CTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAAATATCCATTTGTGTGGATTTATTTATTAAATATTTCTTAATTTTGTTTCTATTGTTATTTGTCATTTTTGACAAATCAAGAA</genome_strand>
        <mrna_strand>AGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTAAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACTCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAAATATCCATTTGTGTGGATTTATTTATTAAATATTTCTTAATTTTGTTTCTATTGTTATTTGTCATTTTTGACAAATCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216332" ref_strand="+" ref_description="SGN-E216332 [cLEL-13-C13](-)">
      <seq>ataggcgttttcatggtgcgtaatgtgtacgctatgtttgtgtttgaacatttgcatgtattgtaacttctcttaaatccttgacctagaataaattgagggcttctgtctttaagacagagaagacgagtgccaaaaaacctcacacatatgtcaataaaatttttagttgatgagtattatttttcttgatagctgtgttaagttagtttaacaagtaaaaatgaatggatagattatgtaaatatccatttgtgtggatttatttattaaatatttcttaattttgtttctattgttatttgtcatttttgacaaatcaagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15349" stop="16281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15649" g_stop="15974" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="343"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E216332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15649" e_stop="15974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAAATATCCATTTGTGTGGATTTATTTATTAAATATTTCTTAATTTTGTTTCTATTGTTATTTGTCATTTTTGACAAATCAAGAA</genome_strand>
        <mrna_strand>ATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAAATATCCATTTGTGTGGATTTATTTATTAAATATTTCTTAATTTTGTTTCTATTGTTATTTGTCATTTTTGACAAATCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539931" ref_strand="+" ref_description="SGN-E539931 [TUS-59-P3]">
      <seq>ctttttacgaccgtgttttggtccctttgctatctaaatatactggacggccaagagggctaagtcctgttacccgaatgggaattggcttattagtctcgtgcatgtctatggcattgtctgcaataacagaaagcataagacaaaaaaaggcaatagaggaagggcatgaggacgacccacatgctttagtgaacatgtctgctatgtggctcgtgccacagtatttactactcggagtggctgaggcagcccatgcagttggacagattgagttcttctactctctatttcccaaaagcatggctagcatcgcgtcagctatgtacactattggaactgctgtgtcgagtttgtttggaagtattctggtgagtggtgtggattggcttacatcaacgggaggtaaaacgagctggctttctagcaacattaataagggtcacttggattactatttctggctacttgcttttttgagtttgctcaactttttctattttgtgatggtctgccggttatatgaaactgggaatgatggaagcagtaggttatctcatgtggctgatgaggaagaatgcgactatagactcttatctgaatcttgatgatatgttgtactgcatccttgaatgatccaactacaactaatttaggcagtagagtgttttcatatatattttgaagtatgttgtgaattttctcagacaaaattttggatatcagattgtcttttgtcgaatgtaggcttaagaaaatggtacttgttggattttaagcatcttaatagtattttaaagtgcataattcctaatgagaaatgtcaaatttatagctgcacgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19678" stop="21124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19978" g_stop="20824" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E539931" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19978" e_stop="20824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTACGACCGTGTTTTGGTCCCTTTGCTATCTAAATATACTGGACGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGCTTATTAGTCTCGTGCATGTCTATGGCATTGTCTGCAATAACAGAAAGCATAAGACAAAAAAAGGCAATAGAGGAAGGGCATGAGGACGACCCACATGCTTTAGTGAACATGTCTGCTATGTGGCTCGTGCCACAGTATTTACTACTCGGAGTGGCTGAGGCAGCCCATGCAGTTGGACAGATTGAGTTCTTCTACTCTCTATTTCCCAAAAGCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATGGTACTTGTTGGATTTTAAGCATCTTAATAGTATTTTAAAGTGCATAATTCCTAATGAGAAATGTCAAATTTATAGCTGCACGTTTGA</genome_strand>
        <mrna_strand>CTTTTTACGACCGTGTTTTGGTCCCTTTGCTATCTAAATATACTGGACGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGCTTATTAGTCTCGTGCATGTCTATGGCATTGTCTGCAATAACAGAAAGCATAAGACAAAAAAAGGCAATAGAGGAAGGGCATGAGGACGACCCACATGCTTTAGTGAACATGTCTGCTATGTGGCTCGTGCCACAGTATTTACTACTCGGAGTGGCTGAGGCAGCCCATGCAGTTGGACAGATTGAGTTCTTCTACTCTCTATTTCCCAAAAGCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTTCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATGGTACTTGTTGGATTTTAAGCATCTTAATAGTATTTTAAAGTGCATAATTCCTAATGAGAAATGTCAAATTTATAGCTGCACGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287988" ref_strand="+" ref_description="SGN-E287988 [cLES-7-K2]">
      <seq>gctatctaaatatactggacggccaagagggctaagtcctgttacccgaatgggaattggcttattagtctcgtgcatgtctatggcattgtctgcaataacagaaagcataagacaaaaaaaggcaatagaggaagggcatgaggacgacccacatgctttagtgaacatgtctgctatgtggctcgtgccacagtatttactactcggagtggctgaggcagcccatgcagttggacagattgagttcttctactctctatttcccaaaagcatggctagcatcgcgtcagctatgtacactattggaactgctgtgtcgagtttgtttggaagtattctggtgagtggtgtggattggcttacatcaacgggaggtaaaacgagctggctttctagcaacattaataagggtcacttggattactatttctggctacttgcttttttgagtttgctcaactttttctattttgtgatggtctgccggttatatgaaactgggaatgatggaagcaataggttatctcatgtggctgatgaggaagaatgcgactatagactcttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19706" stop="20877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20006" g_stop="20577" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E287988" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20006" e_stop="20577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATCTAAATATACTGGACGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGCTTATTAGTCTCGTGCATGTCTATGGCATTGTCTGCAATAACAGAAAGCATAAGACAAAAAAAGGCAATAGAGGAAGGGCATGAGGACGACCCACATGCTTTAGTGAACATGTCTGCTATGTGGCTCGTGCCACAGTATTTACTACTCGGAGTGGCTGAGGCAGCCCATGCAGTTGGACAGATTGAGTTCTTCTACTCTCTATTTCCCAAAAGCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTG</genome_strand>
        <mrna_strand>GCTATCTAAATATACTGGACGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGCTTATTAGTCTCGTGCATGTCTATGGCATTGTCTGCAATAACAGAAAGCATAAGACAAAAAAAGGCAATAGAGGAAGGGCATGAGGACGACCCACATGCTTTAGTGAACATGTCTGCTATGTGGCTCGTGCCACAGTATTTACTACTCGGAGTGGCTGAGGCAGCCCATGCAGTTGGACAGATTGAGTTCTTCTACTCTCTATTTCCCAAAAGCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAATAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548301" ref_strand="+" ref_description="SGN-E548301 [TUS-59-P3](-)">
      <seq>gcatggctagcatcgcgtcagctatgtacactattggaactgctgtgtcgagtttgtttggaagtattctggtgagtggtgtggattggcttacatcaacgggaggtaaaacgagctggctttctagcaacattaataagggtcacttggattactatttctggctacttgcttttttgagtttgctcaactttttctattttgtgatggtctgccggttatatgaaactgggaatgatggaagcagtaggttatctcatgtggctgatgaggaagaatgcgactatagactcttatctgaatcttgatgatatgttgtactgcatccttgaatgatccaactacaactaatttaggcagtagagtgttttcatatatattttgaagtatgttgtgaatttcctcagacaaaattttggatatcagattgtcttttgtcgaatgtaggcttaagaaaatggtacttgttggattttaagcatcttaatagtattttaaagtgcataattcctaatgagaaatgtcaaatttatagctgcacgtttgaagcatatgttgtgcagcatttgagttgtcatttgatgacattatatgctcaattacttgtattcgtagttgaatatggtcattagttgttagtaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="19978" stop="105666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20278" g_stop="20924" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20925" i_stop="21913" i_length="989">
            <donor d_prob="0.887" d_score="0.92"/>
            <acceptor a_prob="0.575" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21914" g_stop="21927" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="661" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E548301" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20278" e_stop="20924"/>
          <exon e_start="21914" e_stop="21927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATGGTACTTGTTGGATTTTAAGCATCTTAATAGTATTTTAAAGTGCATAATTCCTAATGAGAAATGTCAAATTTATAGCTGCACGTTTGAAGCATATGTTGTGCAGCATTTGAGTTGTCATTTGATGACATTATATGCTCAATTACTTGTATTCGTAGTTGAATATGGTCATTAGTTGTTAGTAACTCAGGTAAACTATTAACTATGCATCTACTCAATTCAGTACCTCATTATCTTCCTATTTATTCTTTTCAGTTATCATTTTATTTTCAACAATAATTTGTTATATTTATGATATATTACGTCAATAGTATTAACTATTAAATTATCAAAGTAATAATTACACAAATTTCAATCACGTAATGACTTTCCAGACCCTTAAAAGACTTCATAAGAAAGATGGATGAATGTAAAGAAAGTGAAAAACTTAGGACGAACAACTACTTCCCTAGCCTCTTATATATAGTAGTAATAACGTACTAAAAAATAAAGATTTTTTTAAAAACATAAAAGAAACATTTCATTAAGGAAACAATCTTTTTTTTCTATGTCGTAATTTTTTCATATATTCCTTCGGTCGAACAATAGTTGTCCACTATACTATTTTGAAATGTTCAACAATACTTGTCCACTTTATGAAATCAATGAATACTTTTACGCTTATTTTCTAATTTATCCTTATCATTAATTATAGTTAATTTTTCAACACATGTTATTTATTATATTTAAATGGTAATATAGTAAAACTTATTTTTCTATTTATAATTTCTTAAGGGGTTTATCAAGTCGATAATGAACAACTATTGTTGGACAGAGTATCTTTTAAATATTTTGAATTGTCTATTATTGTGACTTATAGTACTTACATAGTTTACAAATACATAAATTTTCAGCCAAATTTAAACTGTTAGGCTCTTAAAAATTGAAATGTGTCAAATAAATTGAGATAGATGGATCGGAATAGTAATTCTGATAGTTTTTTGGGAATAAGTGTTGGGAGAAACAAATGCATGATAGTAAATAAGAATATTGTGATCTTTTTAAATGTAGCCATTATATGGAACAAATTATTATGGTTATTTCAGGCAAGGAGCATGGACCTGATCACCTGGGAATGTGGTTTATTGTTTCTACTCTTTCTCCCACTCATATTATAAAGCCATTGAAGTGCAAAAACAGAGAAACAAAGTGAA</genome_strand>
        <mrna_strand>GCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATGGTACTTGTTGGATTTTAAGCATCTTAATAGTATTTTAAAGTGCATAATTCCTAATGAGAAATGTCAAATTTATAGCTGCACGTTTGAAGCATATGTTGTGCAGCATTTGAGTTGTCATTTGATGACATTATATGCTCAATTACTTGTATTCGTAGTTGAATATGGTCATTAGTTGTTAGTAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238825" ref_strand="+" ref_description="SGN-E238825 [cLEL-9-A21](-)">
      <seq>gagtttgtttgaaggtattctggtgagtggtgtgaattggcttacatcaacgggaggtaaaacgagctggctttctagcaacattaataagggtcacttggattactatttctggctacttgcttttttgagtttgctcaactttttctattttgtgatggtctgccggttatatgaaactgggaatgatggaagcagtaggttatctcatgtggctgatgaggaagaatgcgactatagactcttatctgaatcttgatgatatgttgtactgcatccttgaatgatccaactacaactaatttaggcagtagagtgttttcatatatattttgaagtatgttgtgaatttcctcagacaaaattttggatatcagattgtcttttgtcgaatgtaggcttaagaaaatggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20027" stop="21040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20327" g_stop="20737" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="430"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E238825" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20327" e_stop="20737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATG</genome_strand>
        <mrna_strand>GAGTTTGTTTGAAGGTATTCTGGTGAGTGGTGTGAATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238774" ref_strand="+" ref_description="SGN-E238774 [cLEL-9-A21](-)">
      <seq>ctttctagcaacattaataagggtcacttggattactatttctggctacttgcttttttgagtttgctcaactttttctattttgtgatggtctgccggttatatgaaactgggaatgatggaagcagtaggttatctcatgtggctgatgaggaagaatgcgactatagactcttatctgaatcttgatgatatgttgtactgcatccttgaatgatccaactacaactaatttaggcagtagagtgttttcatatatattttgaagtatgttgtgaatttcctcagacaaaattttggatatcagattgtcttttgtcgaatgtaggcttaagaccctggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20097" stop="21032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20397" g_stop="20732" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="360"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E238774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20397" e_stop="20732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGA</genome_strand>
        <mrna_strand>CTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549945" ref_strand="+" ref_description="SGN-E549945 [TUS-5-J24]">
      <seq>gtggtccactggttttgtgatctttgtggacatgaatgtgtttgcattttccttacttcaaacaaaaaccatggatagacacatcttccctcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttgacaatctggattgctttctacgaccgtgttttggtccctttactatcaaaatatactggacagccaagagggctaagtcctgtcaccagaatggggattggcttaatagcctccagtatgtctattgcattatcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggtttgtgccacagtatgcactactcggagtggctgaggctgcccatgcagttggacagattgagttcttgtatgctctattaccgaaaagcatgtccagcactgcgtcagctatgtacactgttgggactgctgtgtcgagtttgattggaagtattctggtgagtagtgtggattggctttcatcaacgggaggtaaaacgagctggctttcgagcaacattaaccagggtcacattgattactttttctggctacttacatttttngacttgctaaacttgttatattttttgctcatctgctggttttatgaagttggcaataatgggagcagtaattcagctcatgttgctgaagataaagaatgtgattatagactcttatctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22859" stop="24216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23159" g_stop="23916" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E549945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23159" e_stop="23916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTATCTGAAT</genome_strand>
        <mrna_strand>GTGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTNGACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTATCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389864" ref_strand="+" ref_description="SGN-E389864 [TUS-4-J24]">
      <seq>gtggtctcctggttttgtgatctttgtggacatgaatgtgtttgcattttccttacttcaaacaaaaaccatggatagacacatcttccctcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttgacaatctggattgctttctacgaccgtgttttggtccctttactatcaaaatatactggacagccaagagggctaagtcctgtcaccagaatggggattggcttaatagcctccagtatgtctattgcattatcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggtttgtgccacagtatgcactactcggagtggctgaggctgcccatgcagttggacagattgagttcttgtatgctctattaccgaaaagcatgtccagcactgcgtcagctatgtacactgttgggactgctgtgtcgagtttgattggaagtattctggtgagtagtgtggattggctttcatcnacggggaggtaaacgagctggctttcgagcaacattaaccagggtcacattgattactttttctggctacttacatttttgaacttgctaaacttgttatattttttgctcatctgctggntttatgaaaagtggcataatgggagcagtattncagctcatgttgctgaagataagaatgtgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22859" stop="24200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23159" g_stop="23900" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E389864" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23159" e_stop="23900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAAC-GGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTAT</genome_strand>
        <mrna_strand>GTGGTCTCCTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCNACGGGGAGGT-AAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGNTTTATGAAAAGTGGCATAATGGGAGCAGTATTNCAGCTCATGTTGCTGAAGAT-AAGAATGTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233717" ref_strand="+" ref_description="SGN-E233717 [cLED-14-A11]">
      <seq>tggtccactggttttgtgatctttgtggacatgaatgtgtttgcattttccttacttcaaacaaaaaccatggatagacacatcttccctcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttgacaatctggattgctttctacgaccgtgttttggtccctttactatcaaaatatactggacagccaagagggctaagtcctgtcaccagaatggggattggcttaatagcctccagtatgtctattgcattatcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggtttgtgccacagtatgcactactcggagtggctgaggctgcccatgcagttggacagattgagttcttgtatgctctattaccgaaaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22860" stop="23918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23160" g_stop="23618" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E233717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23160" e_stop="23618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATG</genome_strand>
        <mrna_strand>TGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390035" ref_strand="+" ref_description="SGN-E390035 [TUS-4-J24](-)">
      <seq>gacatgaatgtgtttgcatttccttacttcaaacaaaaaccatggatagacacatcttccctcactttgaagtaccagcagcatcattcagtgtgttcttgattattgcttgnacaatctggattgctttctacgaccgtgttttggtccctttactatcaaaatatactggacagccaagagggctaagtcctgtcaccagaatggggattggcttaatagcctccagtatgtctattgcattatcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggtttgtgccacagtatgcactactcggagtggctgaggctgcccatgcagttggacagattgagttcttgtatgctctattaccgaaaagcatgtccagcactgcgtcagctatgtacactgttgggactgctgtgtcgagtttgattggaagtattctggtgagtagtgtggattggctttcatcaacgggaggtaaaacgagctggctttcgagcaacattaaccagggtcacattgattactttttctggctacttacatttttgaacttgctaaacttgttatattttttgctcatctgctggttttatgaagttggcaataatgggagcagtaattcagctcatgttgctgaagataaagaatgtgaatatagactcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22887" stop="24210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23187" g_stop="23910" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E390035" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23187" e_stop="23910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTAT</genome_strand>
        <mrna_strand>GACATGAATGTGTTTGCA-TTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTGNACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGAATATAGACTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550256" ref_strand="+" ref_description="SGN-E550256 [TUS-5-J24](-)">
      <seq>cttcaaacaaaaaccatggatagacacatcttccctcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttgacaatctggattgctttctacgaccgtgttttggtccctttactatcaaaatatactggacagccaagagggctaagtcctgtcaccagaatggggattggcttaatagcctccagtatgtctattgcattatcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggtttgtgccacagtatgcactactcggagtggctgaggctgcccatgcagttggacagattgagttcttgtatgctctattaccgaaaagcatgtccagcactgcgtcagctatgtacactgttgggactgctgtgtcgagtttgattggaagtattctggtgagtagtgtggattggctttcatcaacgggaggtaaaacgagctggctttcgagcaacattaaccagggtcacattgattactttttctggctacttacatttttgaacttgctaaacttgttatattttttgctcatctgctggttttatgaagttggcaataatgggagcagtaattcagctcatgttgctgaagataaagaatgtgattatagactcttatctgtatcatgatgagatgtggactgcatttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22914" stop="24246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23214" g_stop="23946" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E550256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23214" e_stop="23946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTATCTGAATCATGATGATATGTTGGACTGCATTTTGAAT</genome_strand>
        <mrna_strand>CTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTATCTGTATCATGATGAGATG-TGGACTGCA-TTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234837" ref_strand="-" ref_description="SGN-E234837 [cLEL-6-K11](-)">
      <seq>tttttttttttttttttttttttcatccagaatgtatgaaactatatgaagattgtaaaggtcttaacatataagaacactttattatctaacttaattaactgtcaagaatgcagtacaacatatcatcaagattcatgtaagagtctataatcacactcttcctcatcagccacatgaggtaattcatcattcccagtctcataaaaccggcggacccatagaaaatataacaggttgagaaaactcattaaagcaggcaaccagaaatggtaatccaggtgacccttattaatgttgctagaaagccagctcgttttacctccccttgatgtaagccaatcctcactactcaccagaatacttccaatcaaactcgacacagcagttccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13194" stop="27022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24694" g_stop="24730" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.703"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24731" i_stop="26360" i_length="1630">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26722" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="396" r_length="360" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E234837" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234837" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24694" e_stop="24730"/>
          <exon e_start="26361" e_stop="26722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTTTTTTGAATGATTTAATTGCAAAATGTAAAATTACTACTTTAACGCACATATCAAAATCTTAAATACGAAAATCTTACGTAATCTCTATTTTGCGGGCTTGTGGAGAGTGGTGGGGGTGGGGTGGGGCTCCTTGTCTTGTCAATTTTATCACCAATAAGTGTGGTTGGTTGAAAATGGTGCTTTCACTGTCAAATCAAAGATGACACGAGGTAAATGAGCTGTTTCCTCGTGGATGGCTACAATTTTGTTAGCATAATTAATCTCTAAATTACTTAATTGGTAAGAGATATAAATATAAGTTTAGCTCATTGAGAGAGTATGATTCTAAATAAAAAATATAAAGATCGAAGATTAGGATAAAAGAATAGTAGTAGATAGTAGTTCATTTTACATCTAGTCATATAATATAGATATCACGTATAAATTTTTTTTCCTCCGTTGTGTATTAATATTTGTCGTCACAGGTATTTTGTACATTGTTATTTTATTTTCTAAATCCTTTTTCTTTTTAACCTTTTTGCTTTTTTTAATGAATGATCTATCGAAATCAACTTCTTTATCTCTCGCAAAAGTAAAGATAATATTTAGATACATTCTATTCTTTCTATATATGCCTTTGTGGAATAAATTGTTGTTGTTAACCACTTAATTGATCTAAATATATCTATAAGAAAGTTTTAATATCATTAAATAGTTTATTCAAAGGATAATTCACTGATTTCATTCCTTCACCAATGTTTTCATCACTAGCCATTTTTCAACTATCGTTATTGTCATTCACTATTAACAATCATTTATAATTACTATCGTAACAACTTGGGAACAAAATGATAAATATCATCACCAAAAATCATAATTTTTTCCCCACTATCGCTATCAATCACTGTAAATTTATAGTCATAAATTATGAGTGGTTCCTTCTTCTTTAATTTATTTATCCTTAGTATATTTTTTTTGGGAGAACTCTAACCTTACGTTTCAATGATGACAAATAGAAGACCACACCACTGAAAAACTTTTTAAAATATTTTATGTATTCTTTGTTTAAGACTCGAAATTTAAAAGTCATTTTTTACTTTATTAAAATCAGTATAAACTAAAAAGATCAGACAAAAGAAAAAGAAAATTGGAGCATTCATTTTCCTGAATACGATAAGTATTTTGGATGTAATGAATATAAGACGAGGCATGTGGACCAGGATAATTTAATGTTTTATTACATAATATATTAATGTATTATTTAATTTAAACTTTCACTATCATTTATATTTCCAATTTTTTAACGTGTAAAATTTAGACACATCAATTTTATATAAAATGGAGAAAAGAGATAATGAAAAAGAGCCATATCTTGTGACTTTACTTGGAGAAAAATTGTGGACATGCATTTACTTCGTATCGGTCAACATTTTAAAGATTAGAGTTAGTGTTGTCTATGGATACAAATTAAAGTTACTTTTTATTTTTGCTAAAATTGATACGGAGCGAAAAAAAAAAGTGAAACTAACTTTCTAATATTTTTCTAATTCAAGTGACAAAAATGACTTTTTAACCATTTAATCTAAAAAAAATTAAAAATAAATGTATTTTAATGTTAGTCTATTAAGTTAAGTGACATATTTATCGCGGAACGTAAGGAAAGTCATAAGATACATAGAAAAATTATATGAAGATTGTAGAGGTGTTAACATACAAAAACACTTCATTATCTAACTTTATTAACTGTCAAGAATGCAGTACAACATATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATGCATCATTCCCAGTTTCATAAAACCGGCAGATGAAATGAAAATATAACAAGTTGAGCAAACTCAAAAAAGTAAGCAGCCAGAAATGGTAATCCAGGTGACCTTTATTAATGTTGCTAGAAAGCCAGCTTGTTTTACCTCCTGTTGATGTAAGCCAATCCTCACTACTCACAAGAAAACTTCCAATCAAACTCGACGCTGCATTCCCAACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTCA-TCCAGAATGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTATATGAAGATTGTAAAGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAAC--ATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCGGACCCATAGAAAATATAACAGGTTGAGAAAACTCATTAAAGCAGGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATACTTCCAATCAAACTCGACACAGCAGTTCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234933" ref_strand="-" ref_description="SGN-E234933 [cLEL-6-K11](-)">
      <seq>tttttttttttttttttttttttcatccagaatgtatgaaactatatgaagattgtaaaggtcttaacatataagaacactttattatctaacttaattaactgtcaagaatgcagtacaacatatcatcaagattcatgtaagagtctataatcacactcttcctcatcagccacatgaggtaattcatcattcccagtctcataaaaccggcagacccatagaaaatataacaggttgagaaaactcattaaagcaagcaaccagaaatggtaatccaggtgacccttattaatgttgctagaaagccagctcgttttacctccccttgatgtaagccaatcctcactactcaccagaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13194" stop="26990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24694" g_stop="24730" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.703"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24731" i_stop="26360" i_length="1630">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26361" g_stop="26690" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="364" r_length="328" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E234933" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234933" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24694" e_stop="24730"/>
          <exon e_start="26361" e_stop="26690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTTTTTTGAATGATTTAATTGCAAAATGTAAAATTACTACTTTAACGCACATATCAAAATCTTAAATACGAAAATCTTACGTAATCTCTATTTTGCGGGCTTGTGGAGAGTGGTGGGGGTGGGGTGGGGCTCCTTGTCTTGTCAATTTTATCACCAATAAGTGTGGTTGGTTGAAAATGGTGCTTTCACTGTCAAATCAAAGATGACACGAGGTAAATGAGCTGTTTCCTCGTGGATGGCTACAATTTTGTTAGCATAATTAATCTCTAAATTACTTAATTGGTAAGAGATATAAATATAAGTTTAGCTCATTGAGAGAGTATGATTCTAAATAAAAAATATAAAGATCGAAGATTAGGATAAAAGAATAGTAGTAGATAGTAGTTCATTTTACATCTAGTCATATAATATAGATATCACGTATAAATTTTTTTTCCTCCGTTGTGTATTAATATTTGTCGTCACAGGTATTTTGTACATTGTTATTTTATTTTCTAAATCCTTTTTCTTTTTAACCTTTTTGCTTTTTTTAATGAATGATCTATCGAAATCAACTTCTTTATCTCTCGCAAAAGTAAAGATAATATTTAGATACATTCTATTCTTTCTATATATGCCTTTGTGGAATAAATTGTTGTTGTTAACCACTTAATTGATCTAAATATATCTATAAGAAAGTTTTAATATCATTAAATAGTTTATTCAAAGGATAATTCACTGATTTCATTCCTTCACCAATGTTTTCATCACTAGCCATTTTTCAACTATCGTTATTGTCATTCACTATTAACAATCATTTATAATTACTATCGTAACAACTTGGGAACAAAATGATAAATATCATCACCAAAAATCATAATTTTTTCCCCACTATCGCTATCAATCACTGTAAATTTATAGTCATAAATTATGAGTGGTTCCTTCTTCTTTAATTTATTTATCCTTAGTATATTTTTTTTGGGAGAACTCTAACCTTACGTTTCAATGATGACAAATAGAAGACCACACCACTGAAAAACTTTTTAAAATATTTTATGTATTCTTTGTTTAAGACTCGAAATTTAAAAGTCATTTTTTACTTTATTAAAATCAGTATAAACTAAAAAGATCAGACAAAAGAAAAAGAAAATTGGAGCATTCATTTTCCTGAATACGATAAGTATTTTGGATGTAATGAATATAAGACGAGGCATGTGGACCAGGATAATTTAATGTTTTATTACATAATATATTAATGTATTATTTAATTTAAACTTTCACTATCATTTATATTTCCAATTTTTTAACGTGTAAAATTTAGACACATCAATTTTATATAAAATGGAGAAAAGAGATAATGAAAAAGAGCCATATCTTGTGACTTTACTTGGAGAAAAATTGTGGACATGCATTTACTTCGTATCGGTCAACATTTTAAAGATTAGAGTTAGTGTTGTCTATGGATACAAATTAAAGTTACTTTTTATTTTTGCTAAAATTGATACGGAGCGAAAAAAAAAAGTGAAACTAACTTTCTAATATTTTTCTAATTCAAGTGACAAAAATGACTTTTTAACCATTTAATCTAAAAAAAATTAAAAATAAATGTATTTTAATGTTAGTCTATTAAGTTAAGTGACATATTTATCGCGGAACGTAAGGAAAGTCATAAGATACATAGAAAAATTATATGAAGATTGTAGAGGTGTTAACATACAAAAACACTTCATTATCTAACTTTATTAACTGTCAAGAATGCAGTACAACATATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATGCATCATTCCCAGTTTCATAAAACCGGCAGATGAAATGAAAATATAACAAGTTGAGCAAACTCAAAAAAGTAAGCAGCCAGAAATGGTAATCCAGGTGACCTTTATTAATGTTGCTAGAAAGCCAGCTTGTTTTACCTCCTGTTGATGTAAGCCAATCCTCACTACTCACAAGAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTCA-TCCAGAATGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTATATGAAGATTGTAAAGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAAC--ATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCAGACCCATAGAAAATATAACAGGTTGAGAAAACTCATTAAAGCAAGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285067" ref_strand="-" ref_description="SGN-E285067 [cLER-19-H20]">
      <seq>ttttttttttttttttttttttttttttttaaggtcttaacatataagaacactttattatctaacttaattaactgtcaagaatgcagtacaacatatcatcaagattcatgtaagagtctataatcacactcttcctcatcagccacatgaggtaattcatcattcccagtctcataaaaccggcagacccatagaaaatataacaagttgagaaaactcattaaagcaagcaaccagaaatggtaatccaggtgacccttattaatgttgctagaaagccagctcgttttacctccccttgatgtaagccaatcctcactactcaccagaatacttccaatcaaactcgacacagcagttccaacagtgtacatagctgacgcgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13194" stop="27045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25202" g_stop="25232" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.742"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25233" i_stop="26382" i_length="1150">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26383" g_stop="26746" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="393" r_length="362" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E285067" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25202" e_stop="25232"/>
          <exon e_start="26383" e_stop="26746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTTTTAACCTTTTTGCTTTTTTTAATGAATGATCTATCGAAATCAACTTCTTTATCTCTCGCAAAAGTAAAGATAATATTTAGATACATTCTATTCTTTCTATATATGCCTTTGTGGAATAAATTGTTGTTGTTAACCACTTAATTGATCTAAATATATCTATAAGAAAGTTTTAATATCATTAAATAGTTTATTCAAAGGATAATTCACTGATTTCATTCCTTCACCAATGTTTTCATCACTAGCCATTTTTCAACTATCGTTATTGTCATTCACTATTAACAATCATTTATAATTACTATCGTAACAACTTGGGAACAAAATGATAAATATCATCACCAAAAATCATAATTTTTTCCCCACTATCGCTATCAATCACTGTAAATTTATAGTCATAAATTATGAGTGGTTCCTTCTTCTTTAATTTATTTATCCTTAGTATATTTTTTTTGGGAGAACTCTAACCTTACGTTTCAATGATGACAAATAGAAGACCACACCACTGAAAAACTTTTTAAAATATTTTATGTATTCTTTGTTTAAGACTCGAAATTTAAAAGTCATTTTTTACTTTATTAAAATCAGTATAAACTAAAAAGATCAGACAAAAGAAAAAGAAAATTGGAGCATTCATTTTCCTGAATACGATAAGTATTTTGGATGTAATGAATATAAGACGAGGCATGTGGACCAGGATAATTTAATGTTTTATTACATAATATATTAATGTATTATTTAATTTAAACTTTCACTATCATTTATATTTCCAATTTTTTAACGTGTAAAATTTAGACACATCAATTTTATATAAAATGGAGAAAAGAGATAATGAAAAAGAGCCATATCTTGTGACTTTACTTGGAGAAAAATTGTGGACATGCATTTACTTCGTATCGGTCAACATTTTAAAGATTAGAGTTAGTGTTGTCTATGGATACAAATTAAAGTTACTTTTTATTTTTGCTAAAATTGATACGGAGCGAAAAAAAAAAGTGAAACTAACTTTCTAATATTTTTCTAATTCAAGTGACAAAAATGACTTTTTAACCATTTAATCTAAAAAAAATTAAAAATAAATGTATTTTAATGTTAGTCTATTAAGTTAAGTGACATATTTATCGCGGAACGTAAGGAAAGTCATAAGATACATAGAAAAATTATATGAAGATTGTAGAGGTGTTAACATACAAAAACACTTCATTATCTAACTTTATTAACTGTCAAGAATGCAGTACAACATATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATGCATCATTCCCAGTTTCATAAAACCGGCAGATGAAATGAAAATATAACAAGTTGAGCAAACTCAAAAAAGTAAGCAGCCAGAAATGGTAATCCAGGTGACCTTTATTAATGTTGCTAGAAAGCCAGCTTGTTTTACCTCCTGTTGATGTAAGCCAATCCTCACTACTCACAAGAAAACTTCCAATCAAACTCGACGCTGCATTCCCAACAGTGTCTATAGCAGACGCGATGCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAAC--ATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCAGACCCATAGAAAATATAACAAGTTGAGAAAACTCATTAAAGCAAGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATACTTCCAATCAAACTCGACACAGCAGTTCCAACAGTGTACATAGCTGACGCGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230581" ref_strand="+" ref_description="SGN-E230581 [cLEL-35-A6](-)">
      <seq>aaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctttacaatcttcaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27056" stop="13197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26756" g_stop="26367" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26366" i_stop="26172" i_length="195">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26171" g_stop="26155" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="404" r_length="17" r_score="0.765"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E230581" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26756" e_stop="26367"/>
          <exon e_start="26171" e_stop="26155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTTGTATGTTAACACCTCTACAATCTTCATATAATTTTTCTATGTATCTTATGACTTTCCTTACGTTCCGCGATAAATATGTCACTTAACTTAATAGACTAACATTAAAATACATTTATTTTTAATTTTTTTTAGATTAAATGGTTAAAAAGTCATTTTTGTCACTTGAATTAGAAAAATATTAGAAAGTTAGTTTCACTTTTTTTTTTCGCTCCGTATCAATTTTAGCAAAAATAAAAAGTAAC</genome_strand>
        <mrna_strand>AAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATG--ATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCA-AAA...................................................................................................................................................................................................CAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285073" ref_strand="+" ref_description="SGN-E285073 [cLER-19-J20]">
      <seq>cagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctgtattaccatttctggttgcttgctttaatgagtttgctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27045" stop="26083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26746" g_stop="26382" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E285073" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26746" e_stop="26382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTTGTATGTTAACACCTC</genome_strand>
        <mrna_strand>CAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGTATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTGCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATG--ATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223463" ref_strand="+" ref_description="SGN-E223463 [cLEL-14-K14](-)">
      <seq>ggcaccagaaaagcatggcaagcatcgcgtctgctatagacactgttgggaatgcagcgtcgagtttgattggaagttttcttgtgagtagtgaggattggcttacatcaacaggaggtaaaacaagctggctttctagcaacattaataaaggtcacctggattaccatttctggctgcttacttttttgagtttgctcaacttgttatattttcatttcatctgccggttttatgaaactgggaatgatgcattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatatgttgtactgcattcttgacagttaataaagttagataatgaagtgtttttgtatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27061" stop="26086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26764" g_stop="26388" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="393"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E223463" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26764" e_stop="26388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACC-GAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTTGTATGTTAA</genome_strand>
        <mrna_strand>GGCACCAGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTTGTATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745602" ref_strand="+" ref_description="SGN-E745602 [GI|47105268]">
      <seq>gatggtcctggggtttagtgtttttttctctctctctttttgtgtctgctaatcatatattaaagcaaagaagagaagtgaagaggaaacagaaaatagcagtggaaatgggcacagaatcacaagctgaaataaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaacatgataatttatttgatgacatattataacatgagtgctgctactggcactagtattattggtatatggggtgcactttcaagtggattggctattgttggggcgattattgctgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggttattctctggcttacatcaatgattccgcaactcacaactttggcatgttctcattttcaacatgtttgtaatggaccaacagcattccagcttgctgttctgtttacatcttttgtgtttacgtctatcggagctggttttgttagaccttgttctataatgtttggtgctgatcaattggaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaggggttgcaactatgattgcagttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaggtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtgcttaaatagagcttgtatgattgaagatcctgaaagagatttgaatgctgatggatcagcttcaaatccatggaatctgtgtagtgtggaacgagttgaatcactcaaggctcttattagaataattcctatgtggtcagccggttttatgatgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28742" stop="26094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28517" g_stop="28366" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="177" r_length="149" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28365" i_stop="28283" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28282" g_stop="28065" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="395" r_length="218" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28064" i_stop="27980" i_length="85">
            <donor d_prob="0.508" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27979" g_stop="27426" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="949" r_length="554" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27425" i_stop="27344" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27343" g_stop="26397" g_length="947"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1894" r_length="945" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1895" polyA_stop="1910"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E745602" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1871</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28517" e_stop="28366"/>
          <exon e_start="28282" e_stop="28065"/>
          <exon e_start="27979" e_stop="27426"/>
          <exon e_start="27343" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCCCTTTGTCTCTTTTAATCATATATCAAAGCAAAGAAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTTAAATTGTTTTGCAATGTGTTGATTCTAATTTCAATTTTTATTTGTTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTCTGTGTGCCATTTCAATGGAATAACATGTTTTTTTAAAACCACCATATCTGTTATGGCTTAACATTCTCCTTATACAGGGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAATTGGTACTATGCTAGCAATGGGGTTGCAACTATGATTGCAGTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGTAGGATTGTCCCAAGCATGTGTAGCAGCATTTAGAAAAAGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAGGTCAGTGTCTCCATCTTATGTCTAATTTTATTATATTGCACTTCATTAGAATAAGAGTTTATTGTATGATGAATATATGTAGGTGTTTAAATAGAGCTTGTATGATTGAAGATCGTGAAAGAGATTTGAATCCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAACCGGTTTAATGGTGTTTGTGGACATGAATGTATTCGCATTTGCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCGCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTT</genome_strand>
        <mrna_strand>TCTCTCTCTTTTTGTGTCTGCTAATCATATATTAAAGCAAAG-AAGAGA-A-GTGAAGAGGAAACAGAAAATAGCAGTGGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.....................................................................................GGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAG..................................................................................GTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATG--ATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541297" ref_strand="+" ref_description="SGN-E541297 [TUS-62-A8](-)">
      <seq>atgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27488" stop="26094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27189" g_stop="26397" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="792" polyA_stop="804"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E541297" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27189" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGTGGACATGAATGTATTCGCATTTGCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCGCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTT</genome_strand>
        <mrna_strand>ATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATG--ATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702297" ref_strand="+" ref_description="SGN-E702297 [FA18BD03]">
      <seq>aggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtgcttaaatagagcttgtatgattgaagatcctgaaagagatttgaatgctgatggatcagcttcaaatccatggaatctgtgtagtgtggaacgagttgaatcactcaaggctcttattagaataattcctatgtggtcagccggttttatgatgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataaaggtcaccgggattaccatttctggttgcttgctttaatgattttctcaacttgttatattttctatgggtctgccgggtttatgagactgggaatgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27814" stop="26248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27514" g_stop="27426" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27425" i_stop="27344" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27343" g_stop="26511" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="921" r_length="832" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E702297" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27514" e_stop="27426"/>
          <exon e_start="27343" e_stop="26511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAGGTCAGTGTCTCCATCTTATGTCTAATTTTATTATATTGCACTTCATTAGAATAAGAGTTTATTGTATGATGAATATATGTAGGTGTTTAAATAGAGCTTGTATGATTGAAGATCGTGAAAGAGATTTGAATCCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAACCGGTTTAATGGTGTTTGTGGACATGAATGTATTCGCATTTGCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCGCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCAT</genome_strand>
        <mrna_strand>AGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAG..................................................................................GTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCGGGATTACCATTTCTGGTTGCTTGCTTTAATGA-TTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGGTTTATGAGACTGGGAATGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321114" ref_strand="+" ref_description="SGN-E321114 [cTOB-13-C14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgggaaggatgagatgagtagatcacctcatgtggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27418" stop="26193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27118" g_stop="26515" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E321114" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27118" e_stop="26515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGAT</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321109" ref_strand="+" ref_description="SGN-E321109 [cTOB-13-A14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27418" stop="26222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27118" g_stop="26522" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E321109" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27118" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGG</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290983" ref_strand="+" ref_description="SGN-E290983 [cLET-8-B23]">
      <seq>ttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27380" stop="26248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27081" g_stop="26542" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E290983" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27081" e_stop="26542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATC</genome_strand>
        <mrna_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321025" ref_strand="+" ref_description="SGN-E321025 [cTOB-13-B14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27418" stop="26250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27118" g_stop="26550" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E321025" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27118" e_stop="26550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTC</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235707" ref_strand="+" ref_description="SGN-E235707 [cLED-15-B6]">
      <seq>gttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaagtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcangtcagtgtctccgtcttttgtctgagtttattatattacaagttcattggaataagacattattgtatgatgaacatatatataggtgcttaaatagagcttgtatgattgaagatccctgaagagatttgaatgctgatggatcagcttcaaatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27991" stop="26970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27700" g_stop="27270" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E235707" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27700" e_stop="27270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGTAGGATTGTCCCAAGCATGTGTAGCAGCATTTAGAAAAAGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAGGTCAGTGTCTCCATCTTATGTCTAATTTTATTATATTGC-ACTTCATTAGAATAAGAGTTTATTGTATGATG-A-ATATATGTAGGTGTTTAAATAGAGCTTGTATGATTGAAGATCGTGAAAGAGATTTGAATCCTGATGGATCAGCTTCAAATCCAT</genome_strand>
        <mrna_strand>GTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAAGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCANGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCCTGAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541300" ref_strand="+" ref_description="SGN-E541300 [TUS-62-A8]">
      <seq>ggaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaggggttgcaactatgattgcagttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaggtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtcagtgtctccgtcttttgtctgagtttattatattacaagttcattggaataagacattattgtatgatgaacatatatataggtgcttaaatagagcttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28091" stop="27022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27791" g_stop="27322" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E541300" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27791" e_stop="27322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAATTGGTACTATGCTAGCAATGGGGTTGCAACTATGATTGCAGTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGTAGGATTGTCCCAAGCATGTGTAGCAGCATTTAGAAAAAGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAGGTCAGTGTCTCCATCTTATGTCTAATTTTATTATATTGC-ACTTCATTAGAATAAGAGTTTATTGTATGATG-A-ATATATGTAGGTGTTTAAATAGAGCTTGTATG</genome_strand>
        <mrna_strand>GGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295626" ref_strand="+" ref_description="SGN-E295626 [cLET-25-M1]">
      <seq>gaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaagggttgcaactatgattgcagttaccggtattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28090" stop="27252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27790" g_stop="27552" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E295626" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27790" e_stop="27552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAATTGGTACTATGCTAGCAATGGGGTTGCAACTATGATTGCAGTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGT</genome_strand>
        <mrna_strand>GAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAAGGGTTGCAACTATGATTGCAGTTACCGGTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331834" ref_strand="+" ref_description="SGN-E331834 [cTOD-7-B5]">
      <seq>tttccctttgtctcttttaatcatatatcaaagcaaagaaaaaaaaaaactgaagaggaaacagagaacgaaactgaaaatgggcactgaaatacaagatgaagtgaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaatctgataatttatttgatgacatattatagcatgagtgctgctacgggtactagtattattggattatggggtgcactttcaggtggattagctattgttggggcgattattgccgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggttattctttggctcacatcaatgataccgcaactcacgactttcgcctgttcacattttcaacatgtttgtaatggaccaacagcattccaacttgctgttctgtctacatcatttgcgtttacgtctattggagctggttttgttagaccttgttctataatgtttggtgctgatcaattggaacaaaaagggaaccctgagaatgagaagattattgagagatatttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28813" stop="27440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28513" g_stop="28366" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28365" i_stop="28283" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28282" g_stop="28065" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="367" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28064" i_stop="27980" i_length="85">
            <donor d_prob="0.508" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27979" g_stop="27740" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="607" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E331834" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28513" e_stop="28366"/>
          <exon e_start="28282" e_stop="28065"/>
          <exon e_start="27979" e_stop="27740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTTTGTCTCTTTTAATCATATATCAAAGCAAAG-AAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTTAAATTGTTTTGCAATGTGTTGATTCTAATTTCAATTTTTATTTGTTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTCTGTGTGCCATTTCAATGGAATAACATGTTTTTTTAAAACCACCATATCTGTTATGGCTTAACATTCTCCTTATACAGGGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAAT</genome_strand>
        <mrna_strand>TTTCCCTTTGTCTCTTTTAATCATATATCAAAGCAAAGAAAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.....................................................................................GGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291404" ref_strand="+" ref_description="SGN-E291404 [cLET-2-J24]">
      <seq>ggaaatgggcacagaatcacaagctgaaataaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaacatgataatttatttgatgacatattataacatgagtgctgctactggcactagtattattggtatatggggtgcactttcaagtggattggctattgttggggcgattattgctgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggatattctctggcttacatcaatgattccgcaactcacaactttggcatgttctcattttcaacatgtttgtaatggaccaacagcattccagcttgctgatctgtttacatcttttgtgtttacgtctatcggagctggttttgttagaccttgttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="28739" stop="27512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28439" g_stop="28366" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28365" i_stop="28283" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28282" g_stop="28065" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="292" r_length="218" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28064" i_stop="27980" i_length="85">
            <donor d_prob="0.508" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27979" g_stop="27812" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E291404" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28439" e_stop="28366"/>
          <exon e_start="28282" e_stop="28065"/>
          <exon e_start="27979" e_stop="27812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTTAAATTGTTTTGCAATGTGTTGATTCTAATTTCAATTTTTATTTGTTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTCTGTGTGCCATTTCAATGGAATAACATGTTTTTTTAAAACCACCATATCTGTTATGGCTTAACATTCTCCTTATACAGGGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATA</genome_strand>
        <mrna_strand>GGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.....................................................................................GGAATGGATATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGATCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745602" ref_strand="+" ref_description="SGN-E745602 [GI|47105268]">
      <seq>gatggtcctggggtttagtgtttttttctctctctctttttgtgtctgctaatcatatattaaagcaaagaagagaagtgaagaggaaacagaaaatagcagtggaaatgggcacagaatcacaagctgaaataaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaacatgataatttatttgatgacatattataacatgagtgctgctactggcactagtattattggtatatggggtgcactttcaagtggattggctattgttggggcgattattgctgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggttattctctggcttacatcaatgattccgcaactcacaactttggcatgttctcattttcaacatgtttgtaatggaccaacagcattccagcttgctgttctgtttacatcttttgtgtttacgtctatcggagctggttttgttagaccttgttctataatgtttggtgctgatcaattggaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaggggttgcaactatgattgcagttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaggtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtgcttaaatagagcttgtatgattgaagatcctgaaagagatttgaatgctgatggatcagcttcaaatccatggaatctgtgtagtgtggaacgagttgaatcactcaaggctcttattagaataattcctatgtggtcagccggttttatgatgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29945" stop="32701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30244" g_stop="30420" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30421" i_stop="30515" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30516" g_stop="30733" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="395" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30734" i_stop="30814" i_length="81">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30815" g_stop="31368" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="949" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="31453" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31454" g_stop="32400" g_length="947"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1896" r_length="947" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1897" polyA_stop="1910"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E745602" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1896</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30244" e_stop="30420"/>
          <exon e_start="30516" e_stop="30733"/>
          <exon e_start="30815" e_stop="31368"/>
          <exon e_start="31454" e_stop="32400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCCTGGGGTTTAGTGTTTTTTTCTCTCTCTCTTTTTGTGTCTGCTAATCATATATTAAAGCAAAGAAGAGAAGTGAAGAGGAAACAGAAAATAGCAGTGGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTCAAATTGTTTTGCAATGTGTTAATTCTAATATCAATTTTTTGTTATTGTTGTTGCTATTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTGTGCTAATTTAACAACATTTTTTTTAAAATTTGAACCAGCATATCTGTTATGGCTTAACATTCTTCTTGGACAGGGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTAT</genome_strand>
        <mrna_strand>GATGGTCCTGGGGTTTAGTGTTTTTTTCTCTCTCTCTTTTTGTGTCTGCTAATCATATATTAAAGCAAAGAAGAGAAGTGAAGAGGAAACAGAAAATAGCAGTGGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...............................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.................................................................................GGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAG.....................................................................................GTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291404" ref_strand="+" ref_description="SGN-E291404 [cLET-2-J24]">
      <seq>ggaaatgggcacagaatcacaagctgaaataaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaacatgataatttatttgatgacatattataacatgagtgctgctactggcactagtattattggtatatggggtgcactttcaagtggattggctattgttggggcgattattgctgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggatattctctggcttacatcaatgattccgcaactcacaactttggcatgttctcattttcaacatgtttgtaatggaccaacagcattccagcttgctgatctgtttacatcttttgtgtttacgtctatcggagctggttttgttagaccttgttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30047" stop="31282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30347" g_stop="30420" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30421" i_stop="30515" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30516" g_stop="30733" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="292" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30734" i_stop="30814" i_length="81">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30815" g_stop="30982" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E291404" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30347" e_stop="30420"/>
          <exon e_start="30516" e_stop="30733"/>
          <exon e_start="30815" e_stop="30982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTCAAATTGTTTTGCAATGTGTTAATTCTAATATCAATTTTTTGTTATTGTTGTTGCTATTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTGTGCTAATTTAACAACATTTTTTTTAAAATTTGAACCAGCATATCTGTTATGGCTTAACATTCTTCTTGGACAGGGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATA</genome_strand>
        <mrna_strand>GGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...............................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.................................................................................GGAATGGATATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGATCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312268" ref_strand="+" ref_description="SGN-E312268 [cTOA-5-N23]">
      <seq>caagaaagggtggtcttaggaccatgccattcatcatttgtactgctctcactctactcttttacttcaaattgttttgcaatgtgttaattctaatatcaattttttgttattgttgttgctattgttttcagtgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaacatgataatttatttgatgacatattataacatgagtgctgctactggcactagtattattggtatatggggtgcactttcaagtggattggctattgttggggcgattattgctgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggttattctctggcttacatcaatgattccgcaactcacaactttggcatgttctcattttcaacatgtttgtaatggaccaacagcattccagcttgctgttctgtttacatcttttgtgtttacgtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30082" stop="31252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30382" g_stop="30733" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30734" i_stop="30814" i_length="81">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30815" g_stop="30952" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="490" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E312268" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30382" e_stop="30733"/>
          <exon e_start="30815" e_stop="30952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTCAAATTGTTTTGCAATGTGTTAATTCTAATATCAATTTTTTGTTATTGTTGTTGCTATTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTGTGCTAATTTAACAACATTTTTTTTAAAATTTGAACCAGCATATCTGTTATGGCTTAACATTCTTCTTGGACAGGGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATC</genome_strand>
        <mrna_strand>CAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTGCTCTCACTCTACTCTTTTACTTCAAATTGTTTTGCAATGTGTTAATTCTAATATCAATTTTTTGTTATTGTTGTTGCTATTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.................................................................................GGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541300" ref_strand="+" ref_description="SGN-E541300 [TUS-62-A8]">
      <seq>ggaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaggggttgcaactatgattgcagttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaggtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtcagtgtctccgtcttttgtctgagtttattatattacaagttcattggaataagacattattgtatgatgaacatatatataggtgcttaaatagagcttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30703" stop="31775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31003" g_stop="31475" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E541300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31003" e_stop="31475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATG</genome_strand>
        <mrna_strand>GGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295626" ref_strand="+" ref_description="SGN-E295626 [cLET-25-M1]">
      <seq>gaacaaaaaggcaaccctgaaaacaagaagattgttgagagctatttcaattggtactatgctagcacaagggttgcaactatgattgcagttaccggtattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30704" stop="31542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31004" g_stop="31242" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E295626" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31004" e_stop="31242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATT</genome_strand>
        <mrna_strand>GAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAAGGGTTGCAACTATGATTGCAGTTACCGGTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235707" ref_strand="+" ref_description="SGN-E235707 [cLED-15-B6]">
      <seq>gttaccgttattatttatattcaagatcgttatggttggcaaattggctttggtatccctgttatactcatggttttgtctgtctcaacgttcctaatcggttcttctctttatatcaaagtgaaacccgatacaaacaacttgctattaggattgttccaagcaagtgcagctgcttttagaaaaaggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcangtcagtgtctccgtcttttgtctgagtttattatattacaagttcattggaataagacattattgtatgatgaacatatatataggtgcttaaatagagcttgtatgattgaagatccctgaagagatttgaatgctgatggatcagcttcaaatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30794" stop="31827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31094" g_stop="31527" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E235707" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31094" e_stop="31527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCAT</genome_strand>
        <mrna_strand>GTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAAGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCANGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCCTGAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702297" ref_strand="+" ref_description="SGN-E702297 [FA18BD03]">
      <seq>aggaaaacccctctttcattgactggttgtgatgactactatcattcgccatatgaaacagaggtcttaacgccatcaaaagacttcaggtgcttaaatagagcttgtatgattgaagatcctgaaagagatttgaatgctgatggatcagcttcaaatccatggaatctgtgtagtgtggaacgagttgaatcactcaaggctcttattagaataattcctatgtggtcagccggttttatgatgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataaaggtcaccgggattaccatttctggttgcttgctttaatgattttctcaacttgttatattttctatgggtctgccgggtttatgagactgggaatgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30980" stop="32586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31280" g_stop="31368" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31369" i_stop="31453" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31454" g_stop="32286" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="921" r_length="832" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E702297" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31280" e_stop="31368"/>
          <exon e_start="31454" e_stop="32286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAAT</genome_strand>
        <mrna_strand>AGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAG.....................................................................................GTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCGGGATTACCATTTCTGGTTGCTTGCTTTAATGA-TTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGGTTTATGAGACTGGGAATGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541297" ref_strand="+" ref_description="SGN-E541297 [TUS-62-A8](-)">
      <seq>atgtttgtagacatgaatgtattcgcattttctgtacttcaaacaaagacaatggatagacatatcttgccacactttgaagtaccagcagcatcattcagcgtgttcttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31308" stop="32701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31608" g_stop="32411" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E541297" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31608" e_stop="32411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACC</genome_strand>
        <mrna_strand>ATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290983" ref_strand="+" ref_description="SGN-E290983 [cLET-8-B23]">
      <seq>ttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31416" stop="32555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31716" g_stop="32255" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E290983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31716" e_stop="32255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</genome_strand>
        <mrna_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230581" ref_strand="-" ref_description="SGN-E230581 [cLEL-35-A6](-)">
      <seq>ttttttttttttttttgttttgaagattgtaaaggtcttaacatataagaacactttattatctaacttaattaactgtcaagaatgcagtacaacatatcatcaagattcatgtaagagtctataatcacactcttcctcatcagccacatgaggtaattcatcattcccagtctcataaaaccggcagacccatagaaaatataacaagttgagaaaactcattaaagcaagcaaccagaaatggtaatccaggtgacccttattaatgttgctagaaagccagctcgttttacctccccttgatgtaagccaatcctcactactcaccagaatacttccaatcaaactcgacacagcagttccaacagtgtacatagctgacgcgatgctggccatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="105665" stop="31741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33048" g_stop="33032" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33031" i_stop="32429" i_length="603">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32428" g_stop="32041" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="404" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E230581" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230581" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33048" e_stop="33032"/>
          <exon e_start="32428" e_stop="32041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTTTTTTTTTAGTTAAGAAATTTCAAAATCTATGTTTGTTCATAAAACACATAATAAATAAACACGATTTTTAACTTAACGTCAACAAACAATTGTTTTTCAGTTTTAAATGTACACAAGTAGACACTTAAATTATTATTAAATTGAAAAAATAGATACAAATATCCTACATGACATGATACACATAGGATGTCATTTAGGATTAATGTGTTCATTTTCTTAATTTTATACAAGTTTAAGTGTCTACTTGTGCATGTTCAAACTTTAAAGTCATATCTATGTATTATGCCTTTATAGAATATATTTTTTCTAACTTCAACCATTATAATTATGTAGAACATATTACACGTAGGACATTATATAGATGTGAATTGTCACACAAGATGTATGTGCTTACTTGTTAGATTTTATATAGACTTAAGTCATTGACTGTCACTTAACTTTGTTCGCGTTTTTTACTTTAACCTCTTATCTTAGGTTTGTTCTAATTGAACACATTTATATGTCTACTTGTTTAATTTTATACAAATTTAAGTATCTAGTTATGCACACTCAAAGTTATCAACTCAATACAAGTTAAGTTCAGAGACATACTCATCCAGAATGTATGAAACTATATGAAGATTGTAAAGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAACATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCAGACCCATAGAAAATATAACAAGTTGAGAAAACTCATTAAAGCAAGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATACTTCCAATCAAACTCGACACAGCAGTTCCAACAGTGTACATAGCTGACGCGATGCTGGCCATGCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTGAAGATTGTAAAGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAACATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCAGACCCATAGAAAATATAACAAGTTGAGAAAACTCATTAAAGCAAGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATACTTCCAATCAAACTCGACACAGCAGTTCCAACAGTGTACATAGCTGACGCGATGCTGGCCATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285067" ref_strand="+" ref_description="SGN-E285067 [cLER-19-H20]">
      <seq>cagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagaccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31751" stop="32718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32051" g_stop="32417" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="393"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E285067" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32051" e_stop="32417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACA</genome_strand>
        <mrna_strand>CAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285073" ref_strand="+" ref_description="SGN-E285073 [cLER-19-J20]">
      <seq>cagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctgtattaccatttctggttgcttgctttaatgagtttgctcaacttgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31751" stop="32713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32051" g_stop="32413" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E285073" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32051" e_stop="32413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTT</genome_strand>
        <mrna_strand>CAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGTATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTGCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230649" ref_strand="+" ref_description="SGN-E230649 [cLEL-35-A6](-)">
      <seq>gcatcgcgtcagctatgtacactgttgaactgctgtggcgagtttgattgaaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcagcattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacctgttatattttctatgggtccgccggttttattagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgatcatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctttacaatcttcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31753" stop="32728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32053" g_stop="32423" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="391"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E230649" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32053" e_stop="32423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTC</genome_strand>
        <mrna_strand>GCATCGCGTCAGCTATGTACACTGTT-GAACTGCTGTGGCGAGTTTGATTGAAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAGCATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACCTGTTATATTTTCTATGGGTCCGCCGGTTTTATTAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATCATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234837" ref_strand="+" ref_description="SGN-E234837 [cLEL-6-K11](-)">
      <seq>tgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcctgctttaatgagttttctcaacctgttatattttctatgggtccgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctttacaatcttcatatagtttcatacattctggatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31775" stop="32748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32075" g_stop="32448" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="396"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E234837" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32075" e_stop="32448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCATATAGTTTCATACATTCTGGATGA</genome_strand>
        <mrna_strand>TGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCCTGCTTTAATGAGTTTTCTCAACCTGTTATATTTTCTATGGGTCCGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCATATAGTTTCATACATTCTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234933" ref_strand="+" ref_description="SGN-E234933 [cLEL-6-K11](-)">
      <seq>gtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacctgttatattttctatgggtctgccggttttatgagactgggaatgatgaattacctcatgtggctgatgaggaagagtgtgattatagactcttacatgaatcttgatgatatgttgtactgcattcttgacagttaattaagttagataataaagtgttcttatatgttaagacctttacaatcttcatatagtttcatacattctggatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31807" stop="32748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32107" g_stop="32448" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="364"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E234933" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32107" e_stop="32448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCATATAGTTTCATACATTCTGGATGA</genome_strand>
        <mrna_strand>GTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACCTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCATATAGTTTCATACATTCTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331834" ref_strand="+" ref_description="SGN-E331834 [cTOD-7-B5]">
      <seq>tttccctttgtctcttttaatcatatatcaaagcaaagaaaaaaaaaaactgaagaggaaacagagaacgaaactgaaaatgggcactgaaatacaagatgaagtgaacacaagaaagggtggtcttaggaccatgccattcatcattttgaatgaatcatttgaaaggatagcaagttatggttcacaaacaaatctgataatttatttgatgacatattatagcatgagtgctgctacgggtactagtattattggattatggggtgcactttcaggtggattagctattgttggggcgattattgccgattgttattggggtcgatataatgctgttgcctatggaaccatcttcacttttattggaatggttattctttggctcacatcaatgataccgcaactcacgactttcgcctgttcacattttcaacatgtttgtaatggaccaacagcattccaacttgctgttctgtctacatcatttgcgtttacgtctattggagctggttttgttagaccttgttctataatgtttggtgctgatcaattggaacaaaaagggaaccctgagaatgagaagattattgagagatatttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="33558" stop="34919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33872" g_stop="33985" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33986" i_stop="34076" i_length="91">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34077" g_stop="34294" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="367" r_length="218" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34295" i_stop="34379" i_length="85">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34380" g_stop="34619" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="607" r_length="240" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E331834" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33872" e_stop="33985"/>
          <exon e_start="34077" e_stop="34294"/>
          <exon e_start="34380" e_stop="34619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGAAGAGAAGTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACAGAATCACAAGTTGAAGTGAACACAAGAAAGGGTGGTCTTAGAACCATGCCATTCATCATTAGTATTACTCTTACTCTTTCATTTTCTTTACTTGAATCGTTTTGCAATGTGTTAATTATAATTCCGTTTTTTCACTTGTTTGTTGTTTTCAGTGAATGAAGCATTTGAAATGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACGGGTACTAGTATTATTGGTATATGGGGCGCATTTTCAAGTGGATTAGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATTTAATGCTGTTGCCTATGGAACCATCTTCACTTTTATTGTGAGTTTTCTGTGCCATTTCAATGGAATAACATGTTTTTTTAAAACCACCATATCTGTTATGGCTTAACATTCCTCTTCGACAGGGAATGGTTATTCTTTGGCTAACATCAATGATTCCGCAACTCACGACTTTGGCCTGTTCTCAGTTGCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTTCATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCCATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTAAGAATGAGAAGATTATTGAAAGCTATTTCAAT</genome_strand>
        <mrna_strand>AAGAAAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT...........................................................................................TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT.....................................................................................GGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321114" ref_strand="+" ref_description="SGN-E321114 [cTOB-13-C14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgggaaggatgagatgagtagatcacctcatgtggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34942" stop="36176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35242" g_stop="35876" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E321114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35242" e_stop="35876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATG</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321109" ref_strand="+" ref_description="SGN-E321109 [cTOB-13-A14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34942" stop="36138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35242" g_stop="35838" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E321109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35242" e_stop="35838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGG</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321025" ref_strand="+" ref_description="SGN-E321025 [cTOB-13-B14]">
      <seq>gcactttgaagtaccagcagcatcattcagtgtgttcttgattattgctttaacaatctggattactttctacgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34942" stop="36110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35242" g_stop="35810" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E321025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35242" e_stop="35810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTC</genome_strand>
        <mrna_strand>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332476" ref_strand="-" ref_description="SGN-E332476 [cTOD-17-B24]">
      <seq>acgatcgtgttttggtccctttgctatcaaaatatactgaaggnccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgggaaggatgagatgagtagatcacctcatgtggctgatgagaaagaatgcgattatagactcttacatgaatcttgatgatatattgtattgcatccttgaatgatccaacaactactaattgagttggacaataaagtttttcatatgttaagaaaaaaaaaaaaaaaaaactcagactagttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35013" stop="36292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35313" g_stop="35992" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="698"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E332476" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332476" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35313" e_stop="35992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATGAGAAAGAATGCGATTATAGACTCTTACATGAATCTTGATGATATATTGTATTGCATCCTTGAATGATCCAACAACTACTAATTGAGTTGGACAATAAAGTTTTTCATATGTTAAGA</genome_strand>
        <mrna_strand>ACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGAAGGNCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATGAGAAAGAATGCGATTATAGACTCTTACATGAATCTTGATGATATATTGTATTGCATCCTTGAATGATCCAACAACTACTAATTGAGTTGGACAATAAAGTTTTTCATATGTTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332247" ref_strand="-" ref_description="SGN-E332247 [cTOD-17-C24]">
      <seq>cccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatagcggaagggcatgaagacgatccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcggaatagctgaggctacccatggagttggacagattgagtttttctacactctattaccgaaaagcatggcaagcatcgcgtcagctatgtacaccgttgggactgctgtgtcgagtttgactggaagtattctggtgagtagtgaagattggcttacatcaaggggaggtaaaacgagctggctttcgagcaacattaataagggtcacctggattaccatttctgggtgcttgcttctatgagttttctcaacctgctatattttctagttgtctgccggttttatgatactgggaaggatgagatgagtagatcacctcatgtggctgatgagaaagaatgcgattatagactcttacatgaatcttgatgatatattgtattgcatccttgaatgatccaacaactactaattgagttggacaataaagtttttcatatgttaagaaaaaaaaaaaaaaaaaactcagactagttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35079" stop="36292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35379" g_stop="35992" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="632"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E332247" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332247" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35379" e_stop="35992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATGAGAAAGAATGCGATTATAGACTCTTACATGAATCTTGATGATATATTGTATTGCATCCTTGAATGATCCAACAACTACTAATTGAGTTGGACAATAAAGTTTTTCATATGTTAAGA</genome_strand>
        <mrna_strand>CCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATGAGAAAGAATGCGATTATAGACTCTTACATGAATCTTGATGATATATTGTATTGCATCCTTGAATGATCCAACAACTACTAATTGAGTTGGACAATAAAGTTTTTCATATGTTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707161" ref_strand="+" ref_description="SGN-E707161 [FA32AH09]">
      <seq>cattctagagaaaatcaaagaactaaagcatacaatgagtactactttaaaggtattgatgttcccatttttggcttatggacacatatctccatatctaaacgtagctaagaagcttgcggacagaggattcttgatttacttgtgttcaacaccgataaatctcaaatccaccatcaacaaaatccccgaaaagtatgctgattcgattcagcttatcgaacttcacttaccagaattacccgaacttcctcctcattaccataccaccaatggtctcccacccaatctcaatcacatccttcgtagagccctgaaaatgtcgaaaccaaacttctcgaaaatcatgcaaaatctgaaacctgatttgttgatttacgacatattgcagcaatgggctgaagatgtggctactgaactaaacattccagcagttaagcttttgacttcgggtgttgctgtgttttcgtattttttcaacttaacgaagaaaccagaggttgaattcccttaccctgctatttatctcaggaaaattgagctagttagatggtgtgaaacgttgtcaaaacataacaaagagggagaagaacatgatgatggtttagcttatggaaatatgcaaatcatgttgatgagtacttctaaaattttagaagccaaatatattgattattgcattgaactgacaaattggaaagttgttccagttggttcactagttcaagattcaatcactaatgacgcggcggacgatgacatggagttaatagattggctaggaacaaaagatgagaattcaactgttttcgtctcctttgggagtgagtatttcttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="37144" stop="38585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37444" g_stop="38285" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E707161" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37444" e_stop="38285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTAGAGAAAATCAAAGAACTAAAGCATACAATGAGTACTACTTTAAAGGTATTGATGTTCCCATTTTTGGCTTATGGACACATATCTCCATATCTAAACGTAGCTAAGAAGCTTGCGGACAGAGGATTCTTGATTTACTTGTGTTCAACACCGATAAATCTCAAATCCACCATCAACAAAATCCCCGAAAAGTATGCTGATTCGATTCAGCTTATCGAACTTCACTTACCAGAATTACCCGAACTTCCTCCTCATTACCATACCACCAATGGTCTCCCACCCAATCTCAATCACATCCTTCGTAGAGCCCTGAAAATGTCGAAACCAAACTTCTCGAAAATCATGCAAAATCTGAAACCTGATTTGTTGATTTACGACATATTGCAGCAATGGGCTGAAGATGTGGCTACTGAACTAAACATTCCAGCAGTTAAGCTTTTGACTTCGGGTGTTGCTGTGTTTTCGTATTTTTTCAACTTAACGAAGAAACCAGAGGTTGAATTCCCTTACCCTGCTATTTATCTCAGGAAAATTGAGCTAGTTAGATGGTGTGAAACGTTGTCAAAACATAACAAAGAGGGAGAAGAACATGATGATGGTTTAGCTTATGGAAATATGCAAATCATGTTGATGAGTACTTCTAAAATTTTAGAAGCCAAATATATTGATTATTGCATTGAACTGACAAATTGGAAAGTTGTTCCAGTTGGTTCACTAGTTCAAGATTCAATCACTAATGACGCGGCGGACGATGACATGGAGTTAATAGATTGGCTAGGAACAAAAGATGAGAATTCAACTGTTTTCGTCTCCTTTGGGAGTGAGTATTTCTTGTCAA</genome_strand>
        <mrna_strand>CATTCTAGAGAAAATCAAAGAACTAAAGCATACAATGAGTACTACTTTAAAGGTATTGATGTTCCCATTTTTGGCTTATGGACACATATCTCCATATCTAAACGTAGCTAAGAAGCTTGCGGACAGAGGATTCTTGATTTACTTGTGTTCAACACCGATAAATCTCAAATCCACCATCAACAAAATCCCCGAAAAGTATGCTGATTCGATTCAGCTTATCGAACTTCACTTACCAGAATTACCCGAACTTCCTCCTCATTACCATACCACCAATGGTCTCCCACCCAATCTCAATCACATCCTTCGTAGAGCCCTGAAAATGTCGAAACCAAACTTCTCGAAAATCATGCAAAATCTGAAACCTGATTTGTTGATTTACGACATATTGCAGCAATGGGCTGAAGATGTGGCTACTGAACTAAACATTCCAGCAGTTAAGCTTTTGACTTCGGGTGTTGCTGTGTTTTCGTATTTTTTCAACTTAACGAAGAAACCAGAGGTTGAATTCCCTTACCCTGCTATTTATCTCAGGAAAATTGAGCTAGTTAGATGGTGTGAAACGTTGTCAAAACATAACAAAGAGGGAGAAGAACATGATGATGGTTTAGCTTATGGAAATATGCAAATCATGTTGATGAGTACTTCTAAAATTTTAGAAGCCAAATATATTGATTATTGCATTGAACTGACAAATTGGAAAGTTGTTCCAGTTGGTTCACTAGTTCAAGATTCAATCACTAATGACGCGGCGGACGATGACATGGAGTTAATAGATTGGCTAGGAACAAAAGATGAGAATTCAACTGTTTTCGTCTCCTTTGGGAGTGAGTATTTCTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319268" ref_strand="+" ref_description="SGN-E319268 [cTOB-16-E10]">
      <seq>aaaatttccccaatttcccccgttatgacacctttaagagtttccgcgatttctcctctgtaaatttttccatcatcatctctaacaatctcaactgcgactcccaattctactatcaacctagcattcattggttgatcaagttgcataggcatggcaactataggtaccccaaaatctatactttccatcgctgaattccaaccacaatgacttataaatcctcccgtactcggatgatttagaattcttggttgtggtgcaaatttgtccaaaactcttcccctctctccaattctttcaaaaaaaccttttggtaatacatcttcaagatttttctcttcacctttcggaaatcttacaacccatatgaaattaacattacttaactccaacccgaaagctacttcttccacatcttcttttgacaagaaatactcactcccaaaggagacgaaaacagttgaattctcatcttttgttcctagccaatctattaactccatgtcatcgtccgccgcgtcattagtgattgaatcttgaactagtgaaccaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="39009" stop="37849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38709" g_stop="38149" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E319268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38709" e_stop="38149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCCCCAATTTCCCCCGTTATGACACCTTTAAGAGTTTCCGCGATTTCTCCTCTGTAAATTTTTCCATCATCATCTCTAACAATCTCAACTGCGACTCCCAATTCTACTATCAACCTAGCATTCATTGGTTGATCAAGTTGCATAGGCATGGCAACTATAGGTACCCCAAAATCTATACTTTCCATCGCTGAATTCCAACCACAATGACTTATAAATCCTCCCGTACTCGGATGATTTAGAATTCTTGGTTGTGGTGCAAATTTGTCCAAAACTCTTCCCCTCTCTCCAATTCTTTCAAAAAAACCTTTTGGTAATACATCTTCAAGATTTTTCTCTTCACCTTTCGGAAATCTTACAACCCATATGAAATTAACATTACTTAACTCCAACCCGAAAGCTACTTCTTCCACATCTTCTTTTGACAAGAAATACTCACTCCCAAAGGAGACGAAAACAGTTGAATTCTCATCTTTTGTTCCTAGCCAATCTATTAACTCCATGTCATCGTCCGCCGCGTCATTAGTGATTGAATCTTGAACTAGTGAACCAACTGGA</genome_strand>
        <mrna_strand>AAAATTTCCCCAATTTCCCCCGTTATGACACCTTTAAGAGTTTCCGCGATTTCTCCTCTGTAAATTTTTCCATCATCATCTCTAACAATCTCAACTGCGACTCCCAATTCTACTATCAACCTAGCATTCATTGGTTGATCAAGTTGCATAGGCATGGCAACTATAGGTACCCCAAAATCTATACTTTCCATCGCTGAATTCCAACCACAATGACTTATAAATCCTCCCGTACTCGGATGATTTAGAATTCTTGGTTGTGGTGCAAATTTGTCCAAAACTCTTCCCCTCTCTCCAATTCTTTCAAAAAAACCTTTTGGTAATACATCTTCAAGATTTTTCTCTTCACCTTTCGGAAATCTTACAACCCATATGAAATTAACATTACTTAACTCCAACCCGAAAGCTACTTCTTCCACATCTTCTTTTGACAAGAAATACTCACTCCCAAAGGAGACGAAAACAGTTGAATTCTCATCTTTTGTTCCTAGCCAATCTATTAACTCCATGTCATCGTCCGCCGCGTCATTAGTGATTGAATCTTGAACTAGTGAACCAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326332" ref_strand="+" ref_description="SGN-E326332 [cTOC-14-B18]">
      <seq>agcttttaggaaaagaaatacccgtctttcatcgactaactatgatgaattgtatcgttggccacttgaatcagaggtcttgcctccatcaaaggactttaggtgtttaaatagagcttgcataattgaagatcctcaacgagatttgaatcccgatggatcagcttcaaatccatggaatctgtgtagtgtggaacaagttgaatcactcaaagctcttattaaagcacttcctatgtggtctacctgtttcatgattttcgtggatatgaatatattttcattttccttgcttcaaaccaagacgatggatagacacatcttccctcacttacaagtaccagcagcatcattcagtgtgtttatgattactgctttaacaatctggattgctttctacgaccgtgttttgatccctttgctatcaaaatatactggacagcctagagggctaagtcctgttaccagaatggggattgggttaatagcttccggtatgtctattgcattgtcagcaataacagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="40413" stop="41612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40713" g_stop="40814" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40815" i_stop="40886" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40887" g_stop="41312" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="528" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E326332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40713" e_stop="40814"/>
          <exon e_start="40887" e_stop="41312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTAGGAAAAGAAATACCCGTCTTTCATCGACTAACTATGATGAATTGTATCGTTGGCCACTTGAATCAGAGGTCTTGCCTCCATCAAAGGACTTTAGGTCAGTGACACCTTTTTCCATTGCTATATGATATTGCAGTTCACTTTAATACGTTTTTATTGTATGCTATAGGTGTTTAAATAGAGCTTGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTCAGTGTGTTTATGATTACTGCTTTAACAATCTGGATTGCTTTCTACGACCGTGTTTTGATCCCTTTGCTATCAAAATATACTGGACAGCCTAGAGGGCTAAGTCCTGTTACCAGAATGGGGATTGGGTTAATAGCTTCCGGTATGTCTATTGCATTGTCAGCAATAACAGAAAG</genome_strand>
        <mrna_strand>AGCTTTTAGGAAAAGAAATACCCGTCTTTCATCGACTAACTATGATGAATTGTATCGTTGGCCACTTGAATCAGAGGTCTTGCCTCCATCAAAGGACTTTAG........................................................................GTGTTTAAATAGAGCTTGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTCAGTGTGTTTATGATTACTGCTTTAACAATCTGGATTGCTTTCTACGACCGTGTTTTGATCCCTTTGCTATCAAAATATACTGGACAGCCTAGAGGGCTAAGTCCTGTTACCAGAATGGGGATTGGGTTAATAGCTTCCGGTATGTCTATTGCATTGTCAGCAATAACAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326440" ref_strand="+" ref_description="SGN-E326440 [cTOC-14-B6]">
      <seq>agcttttattaaaagaaatacccgtctttcatggactaaggatgatgaattgtatcgttggccacttgaatcagaggtcttgcctccatcaaaagactttaggtgtttaaatagagcttgcataattgaagatcctcaacgagatttgaatcccgatggatcagcttcaaatccatggaatctgtgtagtgtggaacaagttgaatcactcaaagctcttattaaagcacttcctatgtggtctacctgtttcatgattttcgtggatatgaatatattttcattttccttgcttcgaaccaagacgatggatagacacatcttccctcacttacaagtaccagcagcatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="40413" stop="41439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40713" g_stop="40814" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40815" i_stop="40886" i_length="72">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40887" g_stop="41139" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="355" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E326440" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40713" e_stop="40814"/>
          <exon e_start="40887" e_stop="41139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTAGGAAAAGAAATACCCGTCTTTCATCGACTAACTATGATGAATTGTATCGTTGGCCACTTGAATCAGAGGTCTTGCCTCCATCAAAGGACTTTAGGTCAGTGACACCTTTTTCCATTGCTATATGATATTGCAGTTCACTTTAATACGTTTTTATTGTATGCTATAGGTGTTTAAATAGAGCTTGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTC</genome_strand>
        <mrna_strand>AGCTTTTATTAAAAGAAATACCCGTCTTTCATGGACTAAGGATGATGAATTGTATCGTTGGCCACTTGAATCAGAGGTCTTGCCTCCATCAAAAGACTTTAG........................................................................GTGTTTAAATAGAGCTTGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCGAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296074" ref_strand="+" ref_description="SGN-E296074 [cLET-24-G17]">
      <seq>tgcataattgaagatcctcaacgagatttgaatcccgatggatcagcttcaaatccatggaatctgtgtagtgtggaacaagttgaatcactcaaagctcttattaaagcacttcctatgtggtctacctgtttcatgattttcgtggatatgaatatattttcattttccttgcttcaaaccaagacgatggatagacacatcttccctcacttacaagtaccagcagcatcattcagtgtgtttatgattactgctttaacaatctggattgctttctacgaccgtgttttgatccctttgctatcaaaatatactggacagcctagagggctaagtcctgttaccagaatggggattgggttaatagcttccggtatgtctattgcattgtcagcaataacagaaagcataagacgacaaagggcaatagaggaaggacatgaggacgatccaaatgctttagtgaacatgtctgctatgtggttcgtgccacagtatgcactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="40603" stop="41712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40903" g_stop="41412" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E296074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40903" e_stop="41412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTCAGTGTGTTTATGATTACTGCTTTAACAATCTGGATTGCTTTCTACGACCGTGTTTTGATCCCTTTGCTATCAAAATATACTGGACAGCCTAGAGGGCTAAGTCCTGTTACCAGAATGGGGATTGGGTTAATAGCTTCCGGTATGTCTATTGCATTGTCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTC</genome_strand>
        <mrna_strand>TGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTCAGTGTGTTTATGATTACTGCTTTAACAATCTGGATTGCTTTCTACGACCGTGTTTTGATCCCTTTGCTATCAAAATATACTGGACAGCCTAGAGGGCTAAGTCCTGTTACCAGAATGGGGATTGGGTTAATAGCTTCCGGTATGTCTATTGCATTGTCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="57947" stop="56923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57647" g_stop="57223" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57647" e_stop="57223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAGCCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTATGGCTGGATTTTTTACTGCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTGAAAAAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702840" ref_strand="+" ref_description="SGN-E702840 [FA19DD04]">
      <seq>gttcagccactcccttcttcttcttcaatggctgctgcaatttctttatcattttctttagaccctcaaactcaacacaattaccatcatcgttttcaccataatactagcttcaattcacataaagcttcaatctttaccccaaaatatacattcccttttgtaatctcatcaaaatcacacacttcaaatctgattatcccactttcaacatcccaatcttcttcatcttcttcctcaacatctccatcatcagtcttccaaaccccacttcaaacaggtagatttctcacaaatcaagaacttgaaaagcttgaatctttagggaaatataggtattttcaagaattggaatctggatcattgtgggttcgtgtgatgagggaagaagaaatggatgttactgtttggttgttggctgagtctttttctgattctatgttgatgcctaaagggtatgtgaaattcatggcatatttagtgaagcagtatatgattgagagaagagcactaatgccttatactgctacacttcttggattctatagagaaaatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgcttaggagaaggggcataggttggcatctgttgaaagcaagcgaggaactaatttctcaaatgagttcttctagagaggtttacttgcactgtcgaatgattgatactgctccactcaacatgtatagaaaagctggatataccattgttgagacagacaacattttttatcttgttggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="57982" stop="60080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58282" g_stop="58979" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59606" g_stop="59780" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="874" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E702840" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58282" e_stop="58979"/>
          <exon e_start="59606" e_stop="59780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCCACTCCCTTCTTCTTCTTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAGGTATCGTTTAACTGCTCTCTCCGTTTCATGTATATTACTTTTTTTTTAGTCTGTTCAAAAGAATGTCTCTTTCCCCTTTTTTAGTCACCTCACACGTTAAACAACAAGATTCAAAATTTCTCGAAACTTTCATAAAATCCGTGCCAAGTCAAGAGTAAAGAAAGAAATTGAAATAGAGGGAGTACTTGTTTCTTGTGTTAATTCCCAATTGATATAGTATCAGTTCTCTATCTCAATCAACATATTGATGATGGGGAAAATTAGTTAATCAAGTTGAGGTAAGGTATAACGCCGAATCTGACTCTGGTGTACTATTCAACTAATTGGTTGTGGTTGACTTGTTATATGTGCTTTTTTTTTTTGGTGTGTGTGTGTCTGTATATATGTGTAATTAACTTGTCAAATATATGCCTTGAGAGTGCAGAAGTGATTTTCAAGAGTCTACATGGATTCGCAAGAGATCATTCTCTGGCTGTATATGTCCTCCTTCCCAATGTCTTTTTCTGTTTGAACTTTTGACATACTTGCATAGGAAAAGTTGATGAATGTAATGTCATTCTTATTGGAAGAGTATATGGATGATGGACTAGTATTGAGTTCCGATATTTGTTATTATCATTTTCCAGAAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACA-TTTTTATCTTGTTGGCATTG</genome_strand>
        <mrna_strand>GTTCAGCCACTCCCTTCTTCTTCTTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTTATCTTGTTGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371123" ref_strand="+" ref_description="SGN-E371123 [TUS-28-F11]">
      <seq>ttcaatggctgctgcaatttctttatcattttctttagaccctcaaactcaacacaattaccatcatcgttttcaccataatactagcttcaattcacataaagcttcaatctttaccccaaaatatacattcccttttgtaatctcatcaaaatcacacacttcaaatctgattatcccactttcaacatcccaatcttcttcatcttcttcctcaacatctccatcatcagtcttccaaaccccacttcaaacaggtagatttctcacaaatcaagaacttgaaaagcttgaatctttagggaaatataggtattttcaagaattggaatctggatcattgtgggttcgtgtgatgagggaagaagaaatggatgttactgtttggttgttggctgagtctttttctgattctatgttgatgcctaaagggtatgtgaaattcatggcatatttagtgaagcagtatatgattgagagaagagcactaatgccttatactgctacacttcttggattctatagagaaaatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgcttaggagaaggggcataggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58005" stop="59279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58305" g_stop="58979" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E371123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58305" e_stop="58979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG</genome_strand>
        <mrna_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270718" ref_strand="+" ref_description="SGN-E270718 [cLEM-6-J13]">
      <seq>ttcaatggctgctgcaatttctttatcattttctttagaccctcaaactcaacacaattaccatcatcgttttcaccataatactagcttcaattcacataaagcttcaatctttaccccaaaatatacattcccttttgtaatctcatcaaaatcacacacttcaaatctgattatcccactttcaacatcccaatcttcttcatcttcttcctcaacatctccatcatcagtcttccaaaccccacttcaaacaggtagatttctcacaaatcaagaacttgaaaagcttgaatctttaaggaaatataggtattttcaagaattggaatctggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58005" stop="58944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58305" g_stop="58644" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E270718" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58305" e_stop="58644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCA</genome_strand>
        <mrna_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAAGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270770" ref_strand="+" ref_description="SGN-E270770 [cLEM-6-N4]">
      <seq>agaagagcactaatgccttatactgctacacttcttggattctatagagaaaatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgcttaggagaaggggcataggttggcatctgttgaaagcaagcgaggaactaatttctcaaatgagttcttctagagaggtttacttgcactgtcgaatgattgatactgctccactcaacatgtatagaaaagctggatataccattgttgagacagacaacatttttatcttgttggcattgcagcgacggaagcacttgatgtggaaagtccttccagattcagaaagcctttctgaagttgatgaatgcacttcttcagtagacacgtgaacatgtaaacatagacaagttttgaggtggattctggtcttcgatttgccaatattctacaggtttatatatccctgaaaacaatcatgttgaactttataacatgcagaagctatatgcaactctgtgaagtaatatgatgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58483" stop="63036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58783" g_stop="58979" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59606" g_stop="59896" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="488" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62617" g_stop="62736" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="608" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E270770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58783" e_stop="58979"/>
          <exon e_start="59606" e_stop="59896"/>
          <exon e_start="62617" e_stop="62736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAGGTATCGTTTAACTGCTCTCTCCGTTTCATGTATATTACTTTTTTTTTAGTCTGTTCAAAAGAATGTCTCTTTCCCCTTTTTTAGTCACCTCACACGTTAAACAACAAGATTCAAAATTTCTCGAAACTTTCATAAAATCCGTGCCAAGTCAAGAGTAAAGAAAGAAATTGAAATAGAGGGAGTACTTGTTTCTTGTGTTAATTCCCAATTGATATAGTATCAGTTCTCTATCTCAATCAACATATTGATGATGGGGAAAATTAGTTAATCAAGTTGAGGTAAGGTATAACGCCGAATCTGACTCTGGTGTACTATTCAACTAATTGGTTGTGGTTGACTTGTTATATGTGCTTTTTTTTTTTGGTGTGTGTGTGTCTGTATATATGTGTAATTAACTTGTCAAATATATGCCTTGAGAGTGCAGAAGTGATTTTCAAGAGTCTACATGGATTCGCAAGAGATCATTCTCTGGCTGTATATGTCCTCCTTCCCAATGTCTTTTTCTGTTTGAACTTTTGACATACTTGCATAGGAAAAGTTGATGAATGTAATGTCATTCTTATTGGAAGAGTATATGGATGATGGACTAGTATTGAGTTCCGATATTTGTTATTATCATTTTCCAGAAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAGGTACATTATTTTCCATGGTCAAGCCCTTTTTCATTCTTTAGGATCTATCTGTAGTCTATTGTACTGTGTTGTTTGTACATGTACATAATCAAACTTGATTTAGCTTTTTGTTTTCCTTTTTATAACCTGAATTGGAGCTGAAACTTATATTAAACTTTACTATTGTATTTGTGATGAACTCATGAATCATTACTCCTTAATCTTCAATAATTTGAACAAGAATGCGTCTGTTTTTACACCGGGGTGATAGCTGTCTTCAGCTTTGTGTGTGTGTATGTAGTATCATCAGAGGTTAACTTTTCCAGGGAATATAACAAACTTAAATATATCTGTTTTGAAAGCAAAGCAGCCAAGTGAAGTCTTAGTTTTCATTCTTTGATATGCGAGGATGAAACATCATAAGAAGTGGCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGTCTGTTCGAAAATAATATTAGCAAGGTTTTTCTGAAAGAAATGTTAATGAAGAATAACTTTTCTCTTCTATCTATACAATATTTATATCACAAGAATAAAGGATGAGGTAAGAAATTTCTTGACAGTCATTCACATGTATGTTTGCAACAGAATTCAAGTAAAACTAGTCGTAATTCCTTCTAGCAGGTAGAACGTTAATATTATTTGTTTTGAAAGAAGAAAGAAAAGGCTGACCTATGCATATCTGTGTGTATTTACGGCAGGAAGTAGAGGAAGGGCGTTGAACATTATTTAAATTGACATTTAGCATCAGCATATATGATTACTGCTTTTGTGTAGTAACACTTTGGATAGTTTTTTTTCTCTTTATACTCTCTTCATCATTCTTGTGTTATGGCTTTGTTTCACTTGTTTCCTTTTTTCTTTGCTCACATTATTTGTTTGTCGTAATGAACTAAATAACAATATGATATCCAAATTAATAGAAACTTCAGACTTAGATTTGATATGCAAGCAACTCACCAGTGTATATTCAGGGTCAAAATAGCCGAAAGTACCAAGTACCCTAGATGTCACACATGATTGTTGCCCTTCTGGCATCAACTTTGCTAGTCCAAAATCTGATATCTGTGCAGCAGAAGAGTATTGATTATCTAGTAGGATGTGTTTCATGAGAAGGAAAACATTTCCGCTGCATGAGTATTGATTATCTATTAGGGTGTGCTTGGTATGAAGGGAAACATTTCCGAATTTTTTCCTTCATACCACACACACCCTTAGTTCTATGAAGAGATCCCCTCCTATAAAAAGATATGAAGAAAATTAGAATATATGAAATGTTGGAGTACCTTTGCATCATAATTAGTGTTCAAAAGAATATTGGTGGATTTGAAGTCCCTATGAATTATAGGAATTCCAACAGCTGAACTTGAATGCAGATATGCAAGTCCTCTTGCTGCCCCAAGAGCTACCTTTAGCCTTAAGGGCCAATCCATTTTCACTTCTGCAATCCCTGCAATTTCAGTGAGACATAGTTAGGCATCAAAAGGTAAGAGTGTTCGAATCAGGAAACTTCAGCTCGTAAACCAACCATTTAAATGATCTTGAAGGTTCCCCTTGTGCATGTACTCATAGACTAGAAATCTGTGCTTTCCATCTGCACAATAGCCTATTAGTGATACCAGATTAGGATGATCCAGTCTGCTCAGAATATCGACTTCCACACGAAACTCACGCTCGCCTTCTGCTTCCTTGAATGAAGGTAGATCCATTTTCTTTATTGCTACAATCTATCAATTGGCAAAACAATCAAAGTCTATATTAGTTGATCTGCTTTCTCAAGTTTCCAGTGTTACAGTAGATGAAAATAAACGACCAATCTGAAACTCTCTCCCTTAACTTGTTTGTCTTACCTCTCCAGACCGCAGTGTACCCTTATAAACTCGACCAAATCCTCCTTTTCCAAGTAGATTGTCATCACTAAAAGAATTTGTTGCCTCCTCCATTTCTCTGAGTGTGAAGACTGATGATCCATGGCGTCTTTTTGCTGCAGGTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGC</genome_strand>
        <mrna_strand>AGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370783" ref_strand="+" ref_description="SGN-E370783 [TUS-28-H18]">
      <seq>agaagagcactaatgccttatactgctacacttcttggattctatagagaaaatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58483" stop="59272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58783" g_stop="58972" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E370783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58783" e_stop="58972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGC</genome_strand>
        <mrna_strand>AGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342814" ref_strand="+" ref_description="SGN-E342814 [cTOF-7-L15]">
      <seq>aatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgcttaggagaaggggcataggttggcatctgttgaaagcaagcgaggaactaatttctcaaatgagttcttctagagaggtttacttgcactgtcgaatgattgatactgctccactcaacatgtatagaaaagctggatataccattgttgagacagacaacatttttatcttgttggcattgcagcgacggaagcacttgatgtggaaagtccttccagattcagaaagcctttctgaagttgatgaatgcacttcttcagtagacacgtgaacatgtaaacatagacaagttttgaggtggattctggtcttcgatttgccaatattctacaggtttatatatccctgaaaacaatcatgttgaactttataacatgcagaagctatatgcaactctgtgaagtaatatgatgcagcacaggcaatcacaatagcgtgataaacattgctgctctattaagaagatgaaggataatgaagaggctggaaacatacaaggatttagcatatcctcagacttgcttctnctacgtttgttccacgctgacaccaaaccaaaaggcatgatnactgttctttctattgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58534" stop="63208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58834" g_stop="58979" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59606" g_stop="59896" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="437" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62617" g_stop="62908" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="729" r_length="292" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E342814" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58834" e_stop="58979"/>
          <exon e_start="59606" e_stop="59896"/>
          <exon e_start="62617" e_stop="62908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAGGTATCGTTTAACTGCTCTCTCCGTTTCATGTATATTACTTTTTTTTTAGTCTGTTCAAAAGAATGTCTCTTTCCCCTTTTTTAGTCACCTCACACGTTAAACAACAAGATTCAAAATTTCTCGAAACTTTCATAAAATCCGTGCCAAGTCAAGAGTAAAGAAAGAAATTGAAATAGAGGGAGTACTTGTTTCTTGTGTTAATTCCCAATTGATATAGTATCAGTTCTCTATCTCAATCAACATATTGATGATGGGGAAAATTAGTTAATCAAGTTGAGGTAAGGTATAACGCCGAATCTGACTCTGGTGTACTATTCAACTAATTGGTTGTGGTTGACTTGTTATATGTGCTTTTTTTTTTTGGTGTGTGTGTGTCTGTATATATGTGTAATTAACTTGTCAAATATATGCCTTGAGAGTGCAGAAGTGATTTTCAAGAGTCTACATGGATTCGCAAGAGATCATTCTCTGGCTGTATATGTCCTCCTTCCCAATGTCTTTTTCTGTTTGAACTTTTGACATACTTGCATAGGAAAAGTTGATGAATGTAATGTCATTCTTATTGGAAGAGTATATGGATGATGGACTAGTATTGAGTTCCGATATTTGTTATTATCATTTTCCAGAAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAGGTACATTATTTTCCATGGTCAAGCCCTTTTTCATTCTTTAGGATCTATCTGTAGTCTATTGTACTGTGTTGTTTGTACATGTACATAATCAAACTTGATTTAGCTTTTTGTTTTCCTTTTTATAACCTGAATTGGAGCTGAAACTTATATTAAACTTTACTATTGTATTTGTGATGAACTCATGAATCATTACTCCTTAATCTTCAATAATTTGAACAAGAATGCGTCTGTTTTTACACCGGGGTGATAGCTGTCTTCAGCTTTGTGTGTGTGTATGTAGTATCATCAGAGGTTAACTTTTCCAGGGAATATAACAAACTTAAATATATCTGTTTTGAAAGCAAAGCAGCCAAGTGAAGTCTTAGTTTTCATTCTTTGATATGCGAGGATGAAACATCATAAGAAGTGGCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGTCTGTTCGAAAATAATATTAGCAAGGTTTTTCTGAAAGAAATGTTAATGAAGAATAACTTTTCTCTTCTATCTATACAATATTTATATCACAAGAATAAAGGATGAGGTAAGAAATTTCTTGACAGTCATTCACATGTATGTTTGCAACAGAATTCAAGTAAAACTAGTCGTAATTCCTTCTAGCAGGTAGAACGTTAATATTATTTGTTTTGAAAGAAGAAAGAAAAGGCTGACCTATGCATATCTGTGTGTATTTACGGCAGGAAGTAGAGGAAGGGCGTTGAACATTATTTAAATTGACATTTAGCATCAGCATATATGATTACTGCTTTTGTGTAGTAACACTTTGGATAGTTTTTTTTCTCTTTATACTCTCTTCATCATTCTTGTGTTATGGCTTTGTTTCACTTGTTTCCTTTTTTCTTTGCTCACATTATTTGTTTGTCGTAATGAACTAAATAACAATATGATATCCAAATTAATAGAAACTTCAGACTTAGATTTGATATGCAAGCAACTCACCAGTGTATATTCAGGGTCAAAATAGCCGAAAGTACCAAGTACCCTAGATGTCACACATGATTGTTGCCCTTCTGGCATCAACTTTGCTAGTCCAAAATCTGATATCTGTGCAGCAGAAGAGTATTGATTATCTAGTAGGATGTGTTTCATGAGAAGGAAAACATTTCCGCTGCATGAGTATTGATTATCTATTAGGGTGTGCTTGGTATGAAGGGAAACATTTCCGAATTTTTTCCTTCATACCACACACACCCTTAGTTCTATGAAGAGATCCCCTCCTATAAAAAGATATGAAGAAAATTAGAATATATGAAATGTTGGAGTACCTTTGCATCATAATTAGTGTTCAAAAGAATATTGGTGGATTTGAAGTCCCTATGAATTATAGGAATTCCAACAGCTGAACTTGAATGCAGATATGCAAGTCCTCTTGCTGCCCCAAGAGCTACCTTTAGCCTTAAGGGCCAATCCATTTTCACTTCTGCAATCCCTGCAATTTCAGTGAGACATAGTTAGGCATCAAAAGGTAAGAGTGTTCGAATCAGGAAACTTCAGCTCGTAAACCAACCATTTAAATGATCTTGAAGGTTCCCCTTGTGCATGTACTCATAGACTAGAAATCTGTGCTTTCCATCTGCACAATAGCCTATTAGTGATACCAGATTAGGATGATCCAGTCTGCTCAGAATATCGACTTCCACACGAAACTCACGCTCGCCTTCTGCTTCCTTGAATGAAGGTAGATCCATTTTCTTTATTGCTACAATCTATCAATTGGCAAAACAATCAAAGTCTATATTAGTTGATCTGCTTTCTCAAGTTTCCAGTGTTACAGTAGATGAAAATAAACGACCAATCTGAAACTCTCTCCCTTAACTTGTTTGTCTTACCTCTCCAGACCGCAGTGTACCCTTATAAACTCGACCAAATCCTCCTTTTCCAAGTAGATTGTCATCACTAAAAGAATTTGTTGCCTCCTCCATTTCTCTGAGTGTGAAGACTGATGATCCATGGCGTCTTTTTGCTGCAGGTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTC</genome_strand>
        <mrna_strand>AATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTNCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATNACTGTTCTTTCTATTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371122" ref_strand="+" ref_description="SGN-E371122 [TUS-28-F11](-)">
      <seq>tgatgaatgcacttcttcagtagacacgtgaacatgtaaacatagacaagttttgaggtggattctggtcttcgatttgccaatattctacaggtttatatatccctgaaaacaatcatgttgaactttataacatgcagaagctatatgcaactctgtgaagtaatatgatgcagcacaggcaatcacaatagcgtgataaacattgctgctctattaagaagatgaaggataatgaagaggctggaaacatacaaggatttagcatatcctcagacttgcttctcctacgtttgttccacgctgacaccaaaccaaaaggcatgataactgttctttctattgattcagatgctttcttgtgtgttcaatgatgtattacatttgataagacagtaaacattgatggagaaaaggatacaagtttctaagctgtagagaaattaatgagaagaaaacaaaacaactcgaaaactactgaataattatgcattaaaacagaaaaccagctgaaggagaaagaagaatgaaaaaatagatatagaagtatattggaaagaggagatggatagagttgtatgagaatcctgttggagtatgtacaaagcaagtgagaagtttagcttatgacaagtacttgacattttaacagcttgtttggatggttgttattacctattgtattctgtttttctgtttagttttaatataacgtttgttttaactgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="59540" stop="63589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59840" g_stop="59896" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62617" g_stop="63297" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="738" r_length="681" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E371122" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59840" e_stop="59896"/>
          <exon e_start="62617" e_stop="63297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAGGTACATTATTTTCCATGGTCAAGCCCTTTTTCATTCTTTAGGATCTATCTGTAGTCTATTGTACTGTGTTGTTTGTACATGTACATAATCAAACTTGATTTAGCTTTTTGTTTTCCTTTTTATAACCTGAATTGGAGCTGAAACTTATATTAAACTTTACTATTGTATTTGTGATGAACTCATGAATCATTACTCCTTAATCTTCAATAATTTGAACAAGAATGCGTCTGTTTTTACACCGGGGTGATAGCTGTCTTCAGCTTTGTGTGTGTGTATGTAGTATCATCAGAGGTTAACTTTTCCAGGGAATATAACAAACTTAAATATATCTGTTTTGAAAGCAAAGCAGCCAAGTGAAGTCTTAGTTTTCATTCTTTGATATGCGAGGATGAAACATCATAAGAAGTGGCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGTCTGTTCGAAAATAATATTAGCAAGGTTTTTCTGAAAGAAATGTTAATGAAGAATAACTTTTCTCTTCTATCTATACAATATTTATATCACAAGAATAAAGGATGAGGTAAGAAATTTCTTGACAGTCATTCACATGTATGTTTGCAACAGAATTCAAGTAAAACTAGTCGTAATTCCTTCTAGCAGGTAGAACGTTAATATTATTTGTTTTGAAAGAAGAAAGAAAAGGCTGACCTATGCATATCTGTGTGTATTTACGGCAGGAAGTAGAGGAAGGGCGTTGAACATTATTTAAATTGACATTTAGCATCAGCATATATGATTACTGCTTTTGTGTAGTAACACTTTGGATAGTTTTTTTTCTCTTTATACTCTCTTCATCATTCTTGTGTTATGGCTTTGTTTCACTTGTTTCCTTTTTTCTTTGCTCACATTATTTGTTTGTCGTAATGAACTAAATAACAATATGATATCCAAATTAATAGAAACTTCAGACTTAGATTTGATATGCAAGCAACTCACCAGTGTATATTCAGGGTCAAAATAGCCGAAAGTACCAAGTACCCTAGATGTCACACATGATTGTTGCCCTTCTGGCATCAACTTTGCTAGTCCAAAATCTGATATCTGTGCAGCAGAAGAGTATTGATTATCTAGTAGGATGTGTTTCATGAGAAGGAAAACATTTCCGCTGCATGAGTATTGATTATCTATTAGGGTGTGCTTGGTATGAAGGGAAACATTTCCGAATTTTTTCCTTCATACCACACACACCCTTAGTTCTATGAAGAGATCCCCTCCTATAAAAAGATATGAAGAAAATTAGAATATATGAAATGTTGGAGTACCTTTGCATCATAATTAGTGTTCAAAAGAATATTGGTGGATTTGAAGTCCCTATGAATTATAGGAATTCCAACAGCTGAACTTGAATGCAGATATGCAAGTCCTCTTGCTGCCCCAAGAGCTACCTTTAGCCTTAAGGGCCAATCCATTTTCACTTCTGCAATCCCTGCAATTTCAGTGAGACATAGTTAGGCATCAAAAGGTAAGAGTGTTCGAATCAGGAAACTTCAGCTCGTAAACCAACCATTTAAATGATCTTGAAGGTTCCCCTTGTGCATGTACTCATAGACTAGAAATCTGTGCTTTCCATCTGCACAATAGCCTATTAGTGATACCAGATTAGGATGATCCAGTCTGCTCAGAATATCGACTTCCACACGAAACTCACGCTCGCCTTCTGCTTCCTTGAATGAAGGTAGATCCATTTTCTTTATTGCTACAATCTATCAATTGGCAAAACAATCAAAGTCTATATTAGTTGATCTGCTTTCTCAAGTTTCCAGTGTTACAGTAGATGAAAATAAACGACCAATCTGAAACTCTCTCCCTTAACTTGTTTGTCTTACCTCTCCAGACCGCAGTGTACCCTTATAAACTCGACCAAATCCTCCTTTTCCAAGTAGATTGTCATCACTAAAAGAATTTGTTGCCTCCTCCATTTCTCTGAGTGTGAAGACTGATGATCCATGGCGTCTTTTTGCTGCAGGTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAAT</genome_strand>
        <mrna_strand>TGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343904" ref_strand="+" ref_description="SGN-E343904 [cTOF-12-F8]">
      <seq>gcaaatatatgtgtacatagtcaaatctctgcactaacgtgtaatctttgatacgtccttgtttttctcagactcgtccaggctattattaaattattaagaaaatttgagatctttcggttgaatctgggttgtgttcttttattactttgacaacttactatatcctaccattctcattgctctttccaatgtacacttgaaacttttagctgatatttcaacttctgaatttgaagaatgcttcttggtgcatgttgataagattttgtgtcatccatgtcaatctgagaaggtctcagatcattctgaacgtatgcatagtcatgtttagccctttcgcatttgtgtggaggatcagctgaagttctttgatgcagtctaccattaagggtctttcgctactgtcggttctcacacagcgagatgctaggttagcaaacatggtgatagactccattgtgtatgagttcctgctaatctcagggtcaatcaccttacgcagcttcttcttatcattcaaaatatgtctcacctgcggtatcatcaaagaagtggatgtcaactagtgaaaagatttccaaagatatttcattttttgaacacttctcctatatgatgcttttttcgtcattacctgtagtactaaattctgatcacttggtccaggggtgaggtccacagccctgcgtccggttaaaagctcccaacatacacaccaaatgcataaacatcactttgtaaagtgagttttccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60005" stop="61364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60305" g_stop="61064" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E343904" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60305" e_stop="61064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCT-CCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGT</genome_strand>
        <mrna_strand>GCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAGGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCCAACAT-AC-ACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370782" ref_strand="+" ref_description="SGN-E370782 [TUS-28-H18](-)">
      <seq>tatccctgaaaacaatcatgttgaactttataacatgcagaagctatatgcaactctgtgaagtaatatgatgcagcacaggcaatcacaatagcgtgataaacattgctgctctattaagaagatgaaggataatgaagaggctggaaacatacaaggatttagcatatcctcagacttgcttctcctacgtttgttccacgctgacaccaaaccaaaaggcatgataactgttctttctattgattcagatgctttcttgtgtgttcaatgatgtattacatttgataagacagtaaacattgatggagaaaaggatacaagtttctaagctgtagagaaattaatgagaagaaaacaaaacaactcgaaaactactgaataattatgcattaaaacagaaaaccagctgaaggagaaagaagaatgaaaaaatagatatagaagtatattggaaagaggagatggatagagttgtatgagaatcctgttggagtatgtacaaagcaagtgagaagtttagcttatgacaagtacttgacattttaacagcttgtttggatggttgttattacctattgtattctgtttttctgtttagttttaatataacgtttgttttaactgttactctgaatcgttttttttctccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62360" stop="63613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62660" g_stop="63312" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="665"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E370782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62660" e_stop="63312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</genome_strand>
        <mrna_strand>TATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393090" ref_strand="+" ref_description="SGN-E393090 [TUS-37-N16](-)">
      <seq>gagaccttaggagattcaatgcttttgccattaggaggttgaaggagattcagtggtataggggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgttctttgaagggcaagaaagtagcaattgcagggaagaagaaggcccctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="345" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E393090" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTTTTGCCATTAGGAGGTTGAAGGAGATTCAGTGGTATAGGGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTTCTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCCCCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393397" ref_strand="+" ref_description="SGN-E393397 [TUS-38-L15](-)">
      <seq>gagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcattttttttggtaactaacttgtaaaagttacactttatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttttacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="345" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E393397" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTTTTTTGGTAACTAACTTGTAAAAGTTACACTTTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTTTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293059" ref_strand="+" ref_description="SGN-E293059 [cLET-12-A24]">
      <seq>agaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="327" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="344" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E293059" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374528" ref_strand="+" ref_description="SGN-E374528 [TUS-38-L16]">
      <seq>agaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="327" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="344" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E374528" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393091" ref_strand="+" ref_description="SGN-E393091 [TUS-37-N16]">
      <seq>gagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="345" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E393091" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393154" ref_strand="+" ref_description="SGN-E393154 [TUS-38-L15]">
      <seq>gagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="345" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E393154" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393223" ref_strand="+" ref_description="SGN-E393223 [TUS-38-M15]">
      <seq>gagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="345" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E393223" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398051" ref_strand="+" ref_description="SGN-E398051 [TUS-38-M15](-)">
      <seq>aacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagattgatttttcattttttttggtaaataaattgtaaaagttacactttatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgagatcatttttttacatttcaagataagagcttttcaagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65271" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64971" g_stop="64747" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="242" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E398051" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64971" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATTGATTTTTCATTTTTTTTGGTAAATAAATTGTAAAAGTTACACTTTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAGATCATTTTTTTACATTTCAAGATAAGAGCTTTTCAAGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374527" ref_strand="+" ref_description="SGN-E374527 [TUS-38-L16](-)">
      <seq>gagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctataaaggagtaaggcacatccaaggattgccttgcaaaggacaacgaacaaagaacaattgccgtactttgaagggcaaaaaagtagcaattgcagggaaaaaaaaggcacctcgttaaatcaagatcgatttttcattttttttggtaactaacttgtaaaagttacactttatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttttacatttcaagataagagcttttcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="328" r_length="320" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="344" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E374527" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAAT</genome_strand>
        <mrna_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAAAGGAGTAAGGCACATCCAAGGATTGCCTTGCAAAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAAAAAGTAGCAATTGCAGGGAAAAAAAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTTTTTTGGTAACTAACTTGTAAAAGTTACACTTTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTTTACATTTCAAGATAAGAGCTTTTCAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376236" ref_strand="+" ref_description="SGN-E376236 [TUS-48-K15]">
      <seq>agaccttaggagatttaatgctcttgccattatgaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcatgaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttggaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagctttttaagaaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65371" stop="39597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65066" g_stop="64749" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="324" r_length="317" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64748" i_stop="63253" i_length="1496">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63252" g_stop="63239" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="338" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E376236" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65066" e_stop="64749"/>
          <exon e_start="63252" e_stop="63239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACA</genome_strand>
        <mrna_strand>AGGAGATTTAATGCTCTTGCCATTATGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCATGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGGAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTTAAGAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225830" ref_strand="+" ref_description="SGN-E225830 [cLEL-17-F11](-)">
      <seq>gagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagagcaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66144" stop="13196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65844" g_stop="65681" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65066" g_stop="64763" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="468" r_length="304" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64762" i_stop="63253" i_length="1510">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63252" g_stop="63243" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="478" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E225830" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65844" e_stop="65681"/>
          <exon e_start="65066" e_stop="64763"/>
          <exon e_start="63252" e_stop="63243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAA</genome_strand>
        <mrna_strand>GAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAGCAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733539" ref_strand="+" ref_description="SGN-E733539 [LB10BB08]">
      <seq>agcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66692" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66392" g_stop="66293" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="325" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64790" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="602" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64789" i_stop="63804" i_length="986">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63803" g_stop="63784" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="622" r_length="20" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E733539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66392" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64790"/>
          <exon e_start="63803" e_stop="63784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAA</genome_strand>
        <mrna_strand>AGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372821" ref_strand="+" ref_description="SGN-E372821 [TUS-32-F6]">
      <seq>aatagaccagcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66772" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66472" g_stop="66293" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="405" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64763" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="709" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64762" i_stop="63922" i_length="841">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63921" g_stop="63889" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="742" r_length="33" r_score="0.697"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E372821" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66472" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64763"/>
          <exon e_start="63921" e_stop="63889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGA</genome_strand>
        <mrna_strand>AATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372820" ref_strand="+" ref_description="SGN-E372820 [TUS-32-F6](-)">
      <seq>aaaaagttgagttctctttgcaatacattcatggaattggccgcacccctgcacgccagattttggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaaaaggaacttatcccttttcgtgaaaaagtctttaagtacatgattgaaggagcccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctataaaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaaaaacaattgccgtactttgaagggcaaaaaagtagcaattgcagggaaaaaaaaggcccctcgttaaatcaagatcgatttttcattttttttggtaactaacttgtaaaagttacactttatattcctatggcaaactgggcatttgtttgttataaacagttttttccattgaaatcatttttttccctttcaagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66148" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65847" g_stop="65681" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65066" g_stop="64763" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="471" r_length="304" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64762" i_stop="63922" i_length="841">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63921" g_stop="63889" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="504" r_length="33" r_score="0.697"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E372820" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65847" e_stop="65681"/>
          <exon e_start="65066" e_stop="64763"/>
          <exon e_start="63921" e_stop="63889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGA</genome_strand>
        <mrna_strand>AAAAAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCCCTGCACGCCAGATTTTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAAAGGAACTTATCCCTTTTCGTGAAAAAGTCTTTAAGTACATGATTGAAGGAGCCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAAAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAAAACAATTGCCGTACTTTGAAGGGCAAAAAAGTAGCAATTGCAGGGAAAAAAAAGGCCCCTCGTTAAATCAAGATCGATTTTTCATTTTTTTTGGTAACTAACTTGTAAAAGTTACACTTTATATTCCTATGGCAAACTGGGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTTTCCCTTTCAAGATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348077" ref_strand="+" ref_description="SGN-E348077 [cTOF-31-L11]">
      <seq>accactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66103" stop="64463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65803" g_stop="65681" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65066" g_stop="64763" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="427" r_length="304" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64762" i_stop="64645" i_length="118">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.833" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64644" g_stop="64639" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="433" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E348077" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65803" e_stop="65681"/>
          <exon e_start="65066" e_stop="64763"/>
          <exon e_start="64644" e_stop="64639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAA</genome_strand>
        <mrna_strand>ACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAAAAAAAA......................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286774" ref_strand="-" ref_description="SGN-E286774 [cLES-14-L14]">
      <seq>tgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtggaaggagtgnaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataagagcttttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66658" stop="64451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66358" g_stop="66293" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="291" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64750" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="608" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E286774" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286774" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66358" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAG</genome_strand>
        <mrna_strand>TGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGAAGGAGTGNAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714236" ref_strand="+" ref_description="SGN-E714236 [FB10DE10]">
      <seq>cactgttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66634" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66334" g_stop="66293" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="267" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64751" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="583" r_length="316" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E714236" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66334" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAA</genome_strand>
        <mrna_strand>CACTGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCANAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340397" ref_strand="+" ref_description="SGN-E340397 [cTOF-2-J22]">
      <seq>aggcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66746" stop="64463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66449" g_stop="66293" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="382" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64758" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="691" r_length="309" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E340397" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66449" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTT</genome_strand>
        <mrna_strand>AGGCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376609" ref_strand="+" ref_description="SGN-E376609 [TUS-18-O14](-)">
      <seq>tccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66744" stop="64463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66444" g_stop="66293" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="377" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64760" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="684" r_length="307" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E376609" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66444" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCT</genome_strand>
        <mrna_strand>TCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348369" ref_strand="+" ref_description="SGN-E348369 [cTOF-27-K21]">
      <seq>cttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66675" stop="64463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66375" g_stop="66293" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="308" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64761" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="614" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E348369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66375" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGC</genome_strand>
        <mrna_strand>CTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285173" ref_strand="-" ref_description="SGN-E285173 [cLER-20-O22]">
      <seq>ctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66134" stop="64463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65834" g_stop="65681" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65066" g_stop="64763" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="458" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="469"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E285173" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285173" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65834" e_stop="65681"/>
          <exon e_start="65066" e_stop="64763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGA</genome_strand>
        <mrna_strand>CTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376610" ref_strand="+" ref_description="SGN-E376610 [TUS-18-O14]">
      <seq>gcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagtttttttcattgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66763" stop="64487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66463" g_stop="66293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="396" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64787" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="676" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E376610" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66463" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATC</genome_strand>
        <mrna_strand>GCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTTCATTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299407" ref_strand="+" ref_description="SGN-E299407 [cLET-43-I6]">
      <seq>aaaaatagaccagcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgattgttcatttcttttggtaactaacttgtaaaaattacactctatattcctatggcaaactgtgcatttgtttgttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66775" stop="64505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66475" g_stop="66293" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="408" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64805" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="670" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E299407" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66475" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACA</genome_strand>
        <mrna_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTGTTCATTTCTTTTGGTAACTAACTTGTAAAAATTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245468" ref_strand="+" ref_description="SGN-E245468 [cLEF-43-K9]">
      <seq>atcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66726" stop="64535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66426" g_stop="66293" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="359" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64835" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="591" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E245468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66426" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTAT</genome_strand>
        <mrna_strand>ATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293063" ref_strand="+" ref_description="SGN-E293063 [cLET-12-C8]">
      <seq>attttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgaaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66716" stop="64535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66416" g_stop="66293" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="347" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64835" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="579" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E293063" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66416" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTAT</genome_strand>
        <mrna_strand>ATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGA--AAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291859" ref_strand="+" ref_description="SGN-E291859 [cLET-7-H15]">
      <seq>attttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgaaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattacgaggttgaaggagattcactgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66716" stop="64540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66416" g_stop="66293" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="347" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64840" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="574" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E291859" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66416" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATT</genome_strand>
        <mrna_strand>ATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGA--AAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTACGAGGTTGAAGGAGATTCACTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231757" ref_strand="+" ref_description="SGN-E231757 [cLED-4-J2]">
      <seq>gcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66763" stop="64617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66463" g_stop="66293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="396" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64917" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="546" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E231757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66463" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAG</genome_strand>
        <mrna_strand>GCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288736" ref_strand="+" ref_description="SGN-E288736 [cLES-8-J12]">
      <seq>tcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagctccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagctgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggctgaaggagattcagtgctatagaggagcaaggcacatccaaggattgccttgcagaggacaaccaacaaagaacaattgccgtactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66712" stop="64647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66412" g_stop="66293" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="345" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="465" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E288736" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66412" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTG</genome_strand>
        <mrna_strand>TCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGCTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGCTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGCTGAAGGAGATTCAGTGCTATAGAGGAGCAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACCAACAAAGAACAATTGCCGTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295263" ref_strand="+" ref_description="SGN-E295263 [cLET-20-B13]">
      <seq>ggaaaaatagaccagcttaagggtacatattcaaccttcttcaataccggcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66776" stop="64715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66477" g_stop="66293" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="410" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="65015" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="462" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E295263" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66477" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="65015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATA</genome_strand>
        <mrna_strand>GGAAAAATAGACCAGCTTAAGGGTACATATTCAACCTTCTTCAATACCGGCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299306" ref_strand="+" ref_description="SGN-E299306 [cLET-43-P17]">
      <seq>aaaaatagaccagcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcagacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtccgaagaggaacttatcactcttcgtgaagaagtctctcagtacatgattgaaggagaccttaggagattcaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66775" stop="65365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66475" g_stop="66293" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="408" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E299306" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66475" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT</genome_strand>
        <mrna_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAGACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCCGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTCAGTACATGATTGAAGGAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299352" ref_strand="+" ref_description="SGN-E299352 [cLET-43-P22]">
      <seq>aaaatagaccagcgcaaggctggatgttttaccttctacaattgcagctgaatcaagattttcaacaatggcgcagacactagcaactcctgcacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66774" stop="65364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66474" g_stop="66293" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="406" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E299352" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66474" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT</genome_strand>
        <mrna_strand>AAAATAGACCAGCGCAAGGCTGGATGTTTTACCTTCTACAATTGCAGC-TGAATCAAGATTTTCAACAATGGCGCAGACACTAGCAACTCCTGCACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320489" ref_strand="+" ref_description="SGN-E320489 [cTOB-22-A21]">
      <seq>aatattgtaatctctcaatttaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagttgacaaattttggaatggcattagggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaatactacaagagtttcaaaggcaccctaactgtgattccaaagggaaatggaagttttggtaagtgggtgtgtgaatttgaaagggcaatgatgaaattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68121" stop="69771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68421" g_stop="68638" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69471" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="417" r_length="199" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E320489" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68421" e_stop="68638"/>
          <exon e_start="69271" e_stop="69471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTG</genome_strand>
        <mrna_strand>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTG-AATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTTGGTAAGTGGGTGTGTGAATTTGAAAGGGC-AATGATGAAATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692648" ref_strand="+" ref_description="SGN-E692648 [LH_Ea09E06]">
      <seq>cccgttcaattaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaaccataatggggttaagaccttattactatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68135" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68430" g_stop="68638" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="658" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="670"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E692648" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68430" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CCCGTTCAATT-AAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACCATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692928" ref_strand="+" ref_description="SGN-E692928 [LH_Ea09P22]">
      <seq>cgtctcaattaaaaaaaatgtcatccaatttaggaaaaattcctgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaaccataatggggttaagaccttattactatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68133" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68431" g_stop="68638" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="657" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="671"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E692928" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68431" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CGTCTCAATT-AAAAAAAATGTCATCCAATTTAGGAAAAATTCCTGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACCATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696768" ref_strand="+" ref_description="SGN-E696768 [LH_Ea09P22](-)">
      <seq>ctcaattaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttcgggtcatgtaagtgtaacaaaaacttgaataaataaaaacggaatggggttaagcccttattactattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68134" stop="69992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68434" g_stop="68638" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="654" r_length="450" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="673"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E696768" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68434" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CTCAA-TTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCGGGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAAACGGAATGGGGTTAAGCCCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696488" ref_strand="+" ref_description="SGN-E696488 [LH_Ea09E06](-)">
      <seq>ctcaattaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacatggctcgtcatgtaagtgtaacaaaaacttgaataaataaaaggataatggggttaagaccttattactattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68134" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68434" g_stop="68638" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="654" r_length="450" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="669"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E696488" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68434" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CTCAA-TTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACATGGCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAAGGATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690264" ref_strand="+" ref_description="SGN-E690264 [LH_Ea03A22]">
      <seq>ttcaattaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaaccataatggggttaagaccttattactatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68135" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68434" g_stop="68638" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="654" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="667"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E690264" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68434" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>TTCAATT-AAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACCATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694104" ref_strand="+" ref_description="SGN-E694104 [LH_Ea03A22](-)">
      <seq>ctcaattaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaacgataatggggttaagaccttattactatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68134" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68434" g_stop="68638" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="654" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="673"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E694104" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68434" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CTCAA-TTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACGATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249236" ref_strand="+" ref_description="SGN-E249236 [cLEF-50-J13]">
      <seq>tcaatttaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagttgacaaattttggaatggcattagggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaaggtaatgttcatgcattgtttcctcatgttttaattaatttacgtgtcgtaacagataacttatttattttacagatttcaaattctcattttttatggatggtttgtcggttacttgatcactatactacaaaaaaaatggtcattagcaataaaaactaatccaaaaaaacgtattttctaatttaatatcaaaagacttaaattttctatatctaaattcactattaaatattagaagtaacgaatctcaaaattctgactatgccacatagattataaaagtttagaagtacaaatctcaaaattctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68135" stop="69253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68435" g_stop="68953" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E249236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68435" e_stop="68953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAA</genome_strand>
        <mrna_strand>TCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691832" ref_strand="+" ref_description="SGN-E691832 [LH_Ea07C06]">
      <seq>ttgaaaaattgatgttgaagttgaggtgaaaagtccagtctacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaaccataatggggttaagaccttattactatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68165" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68465" g_stop="68638" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="176" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69721" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="626" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="638"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E691832" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68465" e_stop="68638"/>
          <exon e_start="69271" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>GAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTCTACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACCATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720978" ref_strand="+" ref_description="SGN-E720978 [FC12BF11]">
      <seq>aaaaattgatgttgaagttgaggtgaaaagtccagttgacaaattttggaatggcattagggactcaataaatttgttccccaaggcttcacctaatgaatacaaaagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcaccctaactgtgattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaatcattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttttaatgaataaaattacgtgcaggtatgtgagtagctactttacttttctagtcatgtaagtgtaataaaaacttgaataaataaaactataagggggttaagaccttattactatgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68166" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68466" g_stop="68638" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69730" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="633" r_length="460" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E720978" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68466" e_stop="68638"/>
          <exon e_start="69271" e_stop="69730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTATGTACTCCTT</genome_strand>
        <mrna_strand>AAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAAAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAAGGGGGTTAAGACCTTATTACTATGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692805" ref_strand="+" ref_description="SGN-E692805 [LH_Ea09K19]">
      <seq>cgtttagaagttgaggtgaaaagtccagtagacaaattttgcaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaataaaaccataatggggttaagaccttattactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68173" stop="70020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68473" g_stop="68638" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69719" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="614" r_length="448" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E692805" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68473" e_stop="68638"/>
          <exon e_start="69271" e_stop="69719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACT</genome_strand>
        <mrna_strand>CGTTTAGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGCAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAATAAAACCATAATGGGGTTAAGACCTTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696645" ref_strand="+" ref_description="SGN-E696645 [LH_Ea09K19](-)">
      <seq>gttgaagttgaggtgaaaagtccagtagacaaattttggaatggcattatggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcagcctaactgttattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaattattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttcaatgaataaaattacttgcaggaatgtgagtagctactttacttttctcgtcatgtaagtgtaacaaaaacttgaataaagaaaaccataatggggttaagaccttatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68176" stop="70017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68476" g_stop="68638" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69713" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="605" r_length="442" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="624"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E696645" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68476" e_stop="68638"/>
          <exon e_start="69271" e_stop="69713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTT</genome_strand>
        <mrna_strand>GTTGAAGTTGAGGTGAAAAGTCCAGTAGACAAATTTTGGAATGGCATTATGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCAGCCTAACTGTTATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATTATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAG-TTTCAATGAATAAAATTACTTGCAGGAATGTGAGTAGCTACTTTACTTTTCTCGTCATGTAAGTGTAACAAAAACTTGAATAAAGAAAACCATAATGGGGTTAAGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723234" ref_strand="+" ref_description="SGN-E723234 [FC19DE05]">
      <seq>tgacaaattttggaagggcattagggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcaccctaactgtgattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaatcattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatattatatagtttttaatgaataaaattacgtgcaggtatgtgagtagctactttacttttctagtcatgtaagtgtaataaaaacttgaataaataaaactataatggggttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68202" stop="70008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68502" g_stop="68638" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69271" g_stop="69708" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="575" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E723234" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68502" e_stop="68638"/>
          <exon e_start="69271" e_stop="69708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAG</genome_strand>
        <mrna_strand>TGACAAATTTTGGAAGGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATATTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711094" ref_strand="+" ref_description="SGN-E711094 [FB01AA07]">
      <seq>ccgattataaaagtttagaagtacaaatctcaaaattctttgaattcagactgtgccacgtaatctgaattcacatagtgacatgttaagtatatatagtgtgacaaacctggattgtagtgcactggtggaagtgtttcactgttaaccagaggtctcatgttcgagccctgtggatgaagaaaatcttgttgggagtgtcacacccgaacggactctgcagtgagcgatccagaattagtcggagctccaattcggcctccgaacatcgattggaaaaccaaaaaaaagtatatatactctgttcttttgttctatttttcattttattttataatttcattgtttttttttcatacagggtttccattggtgacattctcaaaagagaaaatagagtcaattgatgaggcaaataaaacattggtttattcagttattgatggtgaaaccttgaaatactacaagagtttcaaaggcaccctaactgtgattccaaagggaaatggaagtttggttaagtggtgttgtgaatttgaaagggcaaatgatgaaattcctgagccacaaatcattaaagaatttgctgtcaagaatttcaagaatcttgatgcttatctcattggggcataaaaagaccttatgacatatatgctatgtgatagaaattaataatcttcacatagtatatagtttttaatgaataaaattacgtgcaggtatgtgagtagctactttacttttctagtcatgtaagtgtaataaaaacttgaataaataaaactataatggggttaagaccttattactatgtaaaaannannaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68612" stop="70024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68910" g_stop="69721" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="842"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-E711094" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68910" e_stop="69721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</genome_strand>
        <mrna_strand>CCGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541763" ref_strand="+" ref_description="SGN-E541763 [TUS-62-L15](-)">
      <seq>gaactatacaatcagcaatatttgctttggttatggaaaaagatctaaatgcttggaaacttgagcttaacatggagcttcttgttatagttttaacggcaatttttgggagtttaatacgtagcaatgttcaaatgtggtgcatgcgtttgaaaggatcttcttttcctctatttttcaagccagtgggaattccaacagctagtgcttgtggatgtttactttttgctgatacttttcactatggaagtatgttgagtgcaattatatgtggaatgggttatttcactacactatggggacaactcaaagatgatgaaacaagtaaaaacattaagggtaggatattaccaacaactagtgatgagaaagttccacttttggaagaaagaggagaagacggagacgaagaagtcgaaggagattcaaaagtctaataaaagatggaaatttaataagatgatgaagataaatgttaagtgtttgctaggaattttaatatttgttgtatatatgtgttggagggaagtatttttttcaaaccttccaatgcaagttgaacaatgaaattgttgttcaacattatattgattgtttctctaggtagctatagaggttacgtacgctcttgttgatatgtgtgattgagaaatttggtgtatgttgattaatttcatcccatttgtaaatagtgtgcattgattttgatgagatatcgataatacgagtttgtgatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71840" stop="70201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71540" g_stop="71443" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71442" i_stop="71320" i_length="123">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71319" g_stop="71168" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="250" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71167" i_stop="71000" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70999" g_stop="70495" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="755" r_length="505" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E541763" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71540" e_stop="71443"/>
          <exon e_start="71319" e_stop="71168"/>
          <exon e_start="70999" e_stop="70495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATACAATCAGCAATATTTGCTTTGGTTATGGAAAAAGATCTAAATGCTTGGAAACTTGAGCTTAACATGGAGCTTCTTGTTATAGTTTTAACGGTAAATTTAATAAAGTGCACAAATTTATAATTTTCTATAGTCAATTCATCAATTATAACTATGGTCAAACTATATTAAGTTATTAACATGCAATTTTTATTTTTTTTTGTTCTTAAAAAATAGGCAATTTTTGGGAGTTTAATACGTAGCAATGTTCAAATGTGGTGCATGCGTTTGAAAGGATCTTCTTTTCCTCTATTTTTCAAGCCAGTGGGAATTCCAACAGCTAGTGCTTGTGGATGTTTACTTTTTGCTGATACTTTTCACTATGGAAGGCAAGTATATAAATTTTATCGATTTTTTTCCGTTAAATTATATACACTGACAATATATAAGTAAGAATAAATAGTCTTTACAGTATCAGTATACATGTTATATCTTGAGTTATTATTTTTTAAGTGATCTGATTGCGTAACATAATTGTATTGATGAATATTTTGTAGTATGTTGAGTGCAATTATATGTGGAATGGGTTATTTCACTACACTATGGGGACAACTCAAAGATGATGAAACAAGTAAAAACATTAAGGGTAGGATATTACCAACAACTAGTGATGAGAAAGTTCCACTTTTGGAAGAAAGAGGAGAAGACGGAGACGAAGAAGTCGAAGGAGATTCAAAAGTCTAATAAAAGATGGAAATTTAATAAGATGATGAAGATAAATGTTAAGTGTTTGCTAGGAATTTTAATATTTGTTGTATATATGTGTTGGAGGGAAGTATTTTTTTCAAACCTTCCAATGCAAGTTGAACAATGAAATTGTTGTTCAACATTATATTGATTGTTTCTCTAGGTAGCTATAGAGGTTACGTACGCTCTTGTTGATATGTGTGATTGAGAAATTTGGTGTATGTTGATTAATTTCATCCCATTTGTAAATAGTGTGCATTGATTTTGATGAGATATCGATAATACGAGTTTGTGATGGTATATATAAGATTGCGT</genome_strand>
        <mrna_strand>GAACTATACAATCAGCAATATTTGCTTTGGTTATGGAAAAAGATCTAAATGCTTGGAAACTTGAGCTTAACATGGAGCTTCTTGTTATAGTTTTAACG...........................................................................................................................GCAATTTTTGGGAGTTTAATACGTAGCAATGTTCAAATGTGGTGCATGCGTTTGAAAGGATCTTCTTTTCCTCTATTTTTCAAGCCAGTGGGAATTCCAACAGCTAGTGCTTGTGGATGTTTACTTTTTGCTGATACTTTTCACTATGGAAG........................................................................................................................................................................TATGTTGAGTGCAATTATATGTGGAATGGGTTATTTCACTACACTATGGGGACAACTCAAAGATGATGAAACAAGTAAAAACATTAAGGGTAGGATATTACCAACAACTAGTGATGAGAAAGTTCCACTTTTGGAAGAAAGAGGAGAAGACGGAGACGAAGAAGTCGAAGGAGATTCAAAAGTCTAATAAAAGATGGAAATTTAATAAGATGATGAAGATAAATGTTAAGTGTTTGCTAGGAATTTTAATATTTGTTGTATATATGTGTTGGAGGGAAGTATTTTTTTCAAACCTTCCAATGCAAGTTGAACAATGAAATTGTTGTTCAACATTATATTGATTGTTTCTCTAGGTAGCTATAGAGGTTACGTACGCTCTTGTTGATATGTGTGATTGAGAAATTTGGTGTATGTTGATTAATTTCATCCCATTTGTAAATAGTGTGCATTGATTTTGATGAGATATCGATAATACGAGTTTGTGATGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545714" ref_strand="+" ref_description="SGN-E545714 [TUS-68-L8](-)">
      <seq>gcatttgttttgacattttataagggccctccaatcattaaccaacacttaacttctactttctcatctcaacaaaattggatccttggaggagttatacttgcttgtgagtctatgtccacttcactatggtacattattcaggcttcaattcttaagatataccaagaagagatggtgatagtgtgtttgtattgcttctttgtgaccatcatatctacattaatatccctagtggtggagagaaatacaaatgcttggatcatatatctagacattcgtctcattgctattctctactcgggtataattggtatagcatttaggagttgtatgacaacatggtgcctcaagaagacagatcctctctttgtttcaatgtttaagccctttgccattgtttttgctatcctcattggtaccttttgctttagagatgctttctacttaggaagtttggtgggatcagtgaccacagtgattgggttttatgctgtgatgtggggaaaaactcaagaaaaatactatgaggggaacaacttagaaacacttgctgaaaataatgtccctctgctgcaaaatgaggcataaatacggtgtttgagtcagctcgtgtgcgcctcaattaattttatgtgatatttattatctttcattaaacaacacaaatactgaatcaattcatttcgaggaaagaaataattgtatgttagttgtaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90987" stop="13192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90687" g_stop="90544" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90543" i_stop="90353" i_length="191">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90352" g_stop="90194" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="303" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90193" i_stop="89908" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89907" g_stop="89756" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="455" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89210" g_stop="88942" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="723" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88941" i_stop="88173" i_length="769">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.586" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88172" g_stop="88146" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="750" r_length="27" r_score="0.519"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E545714" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90687" e_stop="90544"/>
          <exon e_start="90352" e_stop="90194"/>
          <exon e_start="89907" e_stop="89756"/>
          <exon e_start="89210" e_stop="88942"/>
          <exon e_start="88172" e_stop="88146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGTTTTGACATTTTATAAGGGCCCTCCAATCATTAACCAACACTTAACTTCTACTTTCTCATCTCAACAAAATTGGATCCTTGGAGGAGTTATACTTGCTTGTGAGTCTATGTCCACTTCACTATGGTACATTATTCAGGTCTGTCTGTTTGGTACGACGAAAATAATTTTTTACTTTTAAAAATGTATTTTTGTCAACGAAACACTAGGAAATGACTTTTGATGACTTTTAAAAATGCATATTTTATCAACGAAACATCAGAAAATGACTTTTGGCCGTGTGTGATTAATTAACTATGATATTTTTTTTTTTAATTTTTTGTTTTTTAGGCTTCAATTCTTAAGATATACCAAGAAGAGATGGTGATAGTGTGTTTGTATTGCTTCTTTGTGACCATCATATCTACATTAATATCCCTAGTGGTGGAGAGAAATACAAATGCTTGGATCATATATCTAGACATTCGTCTCATTGCTATTCTCTACTCGGTAATACTAACAACTAAACACACATTCATTTTCTTTTTGACTCGAATCTATAAAAAAGTTAAATTAGTTCACGAAAATATGACTAGTCTATGTTATTTTATGATTGGATGTGTTAATGACTCACTTATATTAAGTCAAATTCATCTAATAGATTGGGTTGATTTGAAGTACATGTATTGATTTATGAGAAAAATTGTCAAAATATTTTAAGTTGTTATTTGATATATGTTATTATAATTATACTTTATTTAAGACAATTAACTTACATTAGAATTTGTTCATTCAGGGTATAATTGGTATAGCATTTAGGAGTTGTATGACAACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAGGTATGTATTATTAACTATTATAAATTTGAGATAAGTATTTAAAATACCTCTAAATTTGGTGTGAATTATTAGTTTTCATCTTTGAAATATTGTCTGTCTGAAAAACATTCCTTCACTTTACTAATTGAACTTAAATAAATAAACTTCTTATCTTGTCATATTGGTAAAACATGCCTCTAAATTCTTGACAAGTTTAAAGGTGTTTTCAACATTTCTCTCGGCGTTTTATTTGAAGTCTCACGTTCCTATAAGAGTTTGAGATCATTTCTCAAGGCAAATCGAGAGTGTTTTTATATTCAATTAGTCAAGTAGAGAGATTTTTTAAAGGCTGTTAATAGTTCGGTATGAACCACACCAAGTTCATTCAGGAGTGTTTTCAATACGTTAAACTTCACGGCATGTTTTAATATTAATATTCTAATCATTTTAAAAGTTTCTATATTCAATAAAAAATTATCGATATGTTACGTAAAATGAAATGAATCTAGGGGTAAAATAAACATTTAAGATATGATATGTGTACTAATATAGACATTTGTTTGCAGTTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAATTTTCTCGGGAAAACGTGTAAAAAAACATGACAAACTAAAATGAAACAAAATAGTATATCATAACCTTGAGAAATAACTGAGCATAATATGACCTCTGGACATACTTCTAATAACACTACCTAACTATGTTTTGTAGATTGTAAAATATTATTTAACCAATTATTGTTTCAATAGGATGTCTATATAATTTAAAAACTCAATAATTTTTATATCCATATAACAAACCACATTTAAAAAAAAAAATACAATAGCTTTTTCTTAAATGAATATATTAGTGCAAGTGATAAACACCACCCACCCACTATGTTCATTCAGTATAAATTAAAATAAAGGAATACCACCCATGCTGGTACGTTAGAAATAAGTAAAATAAAGAAACTAATCATAATAAAATTTAAAATATATTGTAGATCCATTGTTAATTTCAATAAATACTGACAAAAAGACAAATCAAGAATATATTAGTGTTCTAAAAATAGACAATTAAAATATTGTTATGAATCGATATATGTTCCTTTTAATACAATTTGATTACTTCGAGGAATCTCATTAATTTAGATTCACGTTCAGAAAAATTCAAACATGTCCATTGGTTTTTAGAACAACTTTGTAAATATATCTTTGATATGAAAATCGAAAAAGTTTCAAATTCATAAATTTATTTTAATTGATTAAAAGAAATTTCGATTCAAAAGAGATGGAAATGAGTGGAGTGGTTCCAT</genome_strand>
        <mrna_strand>GCATTTGTTTTGACATTTTATAAGGGCCCTCCAATCATTAACCAACACTTAACTTCTACTTTCTCATCTCAACAAAATTGGATCCTTGGAGGAGTTATACTTGCTTGTGAGTCTATGTCCACTTCACTATGGTACATTATTCAG...............................................................................................................................................................................................GCTTCAATTCTTAAGATATACCAAGAAGAGATGGTGATAGTGTGTTTGTATTGCTTCTTTGTGACCATCATATCTACATTAATATCCCTAGTGGTGGAGAGAAATACAAATGCTTGGATCATATATCTAGACATTCGTCTCATTGCTATTCTCTACTCG..............................................................................................................................................................................................................................................................................................GGTATAATTGGTATAGCATTTAGGAGTTGTATGACAACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAA-AAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544062" ref_strand="+" ref_description="SGN-E544062 [TUS-66-D6](-)">
      <seq>cctctctttgtttcaatgtttaagccctttgccattgtttttgctatcctcattgggaccttttgcttaagggatgctttctccttaggaagtttggtgggatcagtgaccccagtgattgggttttatgctgtgatgtggggaaaaactcaagaaaaatactatgaggggaacaacttagaaccacttgctgaaaataatgtccctttgctgcaaaatgaggcataaatacggtgtttgagtcagctcgtgtgcgcctcaattaattttatgggatatttattatctttcattaaccaacccaaatactgaatcaattcatttcggggaaagaaataattgtatgttagttgtaaagatagtgttttaaatttatactcatgtattatatcgataaaaataaatatataaaaatcatttaaccaagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctttaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90147" stop="13181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89847" g_stop="89756" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89210" g_stop="88869" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="434" r_length="342" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88868" i_stop="88510" i_length="359">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88509" g_stop="88464" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="480" r_length="46" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E544062" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89847" e_stop="89756"/>
          <exon e_start="89210" e_stop="88869"/>
          <exon e_start="88509" e_stop="88464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAGGTATGTATTATTAACTATTATAAATTTGAGATAAGTATTTAAAATACCTCTAAATTTGGTGTGAATTATTAGTTTTCATCTTTGAAATATTGTCTGTCTGAAAAACATTCCTTCACTTTACTAATTGAACTTAAATAAATAAACTTCTTATCTTGTCATATTGGTAAAACATGCCTCTAAATTCTTGACAAGTTTAAAGGTGTTTTCAACATTTCTCTCGGCGTTTTATTTGAAGTCTCACGTTCCTATAAGAGTTTGAGATCATTTCTCAAGGCAAATCGAGAGTGTTTTTATATTCAATTAGTCAAGTAGAGAGATTTTTTAAAGGCTGTTAATAGTTCGGTATGAACCACACCAAGTTCATTCAGGAGTGTTTTCAATACGTTAAACTTCACGGCATGTTTTAATATTAATATTCTAATCATTTTAAAAGTTTCTATATTCAATAAAAAATTATCGATATGTTACGTAAAATGAAATGAATCTAGGGGTAAAATAAACATTTAAGATATGATATGTGTACTAATATAGACATTTGTTTGCAGTTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAATTTTCTCGGGAAAACGTGTAAAAAAACATGACAAACTAAAATGAAACAAAATAGTATATCATAACCTTGAGAAATAACTGAGCATAATATGACCTCTGGACATACTTCTAATAACACTACCTAACTATGTTTTGTAGATTGTAAAATATTATTTAACCAATTATTGTTTCAATAGGATGTCTATATAATTTAAAAACTCAATAATTTTTATATCCATATAACAAACCACATTTAAAAAAAAAAATACAATAGCTTTTTCTTAAATGAATATATTAGTGCAAGTGATAAACACCACCCACCCACTATGTTCATTCAGTATAAATTAAAATAAAGGAATACCACCCATGCTGGTACGTTAGAAATAAGTAAAATAAAGAAACTAATCATAATAAAATTTAAAATATA</genome_strand>
        <mrna_strand>CCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGGACCTTTTGCTTAAGGGATGCTTTCTCCTTAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGGGATCAGTGACCCCAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAACCACTTGCTGAAAATAATGTCCCTTTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGGGATATTTATTATCTTTCATTAACCAACCCAAATACTGAATCAATTCATTTCGGGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTAAAAA.......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544063" ref_strand="+" ref_description="SGN-E544063 [TUS-66-D6]">
      <seq>aacatggtgcctcaagaagacagatcctctctttgtttcaatgtttaagccctttgccattgtttttgctatcctcattggtaccttttgctttagagatgctttctacttaggaagtttggtgggatcagtgaccacagtgattgggttttatgctgtgatgtggggaaaaactcaagaaaaatactatgaggggaacaacttagaaacacttgctgaaaataatgtccctctgctgcaaaatgaggcataaatacggtgtttgagtcagctcgtgtgcgcctcaattaattttatgtgatatttattatctttcattaaacaacacaaatactgaatcaattcatttcgaggaaagaaataattgtatgttagttgtaaagatagtgttttaaatttatactcatgtattatatcgataaaaataaatatataaaaatcatttaaccaagttnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90172" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89872" g_stop="89756" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89210" g_stop="88823" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="505" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E544063" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89872" e_stop="89756"/>
          <exon e_start="89210" e_stop="88823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAGGTATGTATTATTAACTATTATAAATTTGAGATAAGTATTTAAAATACCTCTAAATTTGGTGTGAATTATTAGTTTTCATCTTTGAAATATTGTCTGTCTGAAAAACATTCCTTCACTTTACTAATTGAACTTAAATAAATAAACTTCTTATCTTGTCATATTGGTAAAACATGCCTCTAAATTCTTGACAAGTTTAAAGGTGTTTTCAACATTTCTCTCGGCGTTTTATTTGAAGTCTCACGTTCCTATAAGAGTTTGAGATCATTTCTCAAGGCAAATCGAGAGTGTTTTTATATTCAATTAGTCAAGTAGAGAGATTTTTTAAAGGCTGTTAATAGTTCGGTATGAACCACACCAAGTTCATTCAGGAGTGTTTTCAATACGTTAAACTTCACGGCATGTTTTAATATTAATATTCTAATCATTTTAAAAGTTTCTATATTCAATAAAAAATTATCGATATGTTACGTAAAATGAAATGAATCTAGGGGTAAAATAAACATTTAAGATATGATATGTGTACTAATATAGACATTTGTTTGCAGTTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAATTTTCTCGGGAAAACGTGTAAAAAAACATGACAAACTAAAATGAAA</genome_strand>
        <mrna_strand>AACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302811" ref_strand="+" ref_description="SGN-E302811 [cLEY-2-K3]">
      <seq>acatggtgcctcaagaagacagatcctctctttgtttcaatgtttaagccctttgccattgtttttgctatcctcattggtaccttttgctttagagatgctttctacttaggaagtttggtgggatcagtgaccacagtgattgggttttatgctgtgatgtggggaaaaactcaagaaaaatactatgaggggaacaacttagaaacacttgctgaaaataatgtccctctgctgcaaaatgaggcataaatacggtgtttgagtcagctcgtgtgcgcctcaattaattttatgtgatatttattatctttcattaaacaacacaaatactgaatcaattcatttcgaggaaagaaataattgtatgttagttgtaaagatagtgttttaaatttatactcatgtattatatcgataaaaataaatatataaaaatcatttaaccaagttaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90171" stop="13194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89871" g_stop="89756" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89210" g_stop="88823" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="504" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-E302811" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89871" e_stop="89756"/>
          <exon e_start="89210" e_stop="88823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAGGTATGTATTATTAACTATTATAAATTTGAGATAAGTATTTAAAATACCTCTAAATTTGGTGTGAATTATTAGTTTTCATCTTTGAAATATTGTCTGTCTGAAAAACATTCCTTCACTTTACTAATTGAACTTAAATAAATAAACTTCTTATCTTGTCATATTGGTAAAACATGCCTCTAAATTCTTGACAAGTTTAAAGGTGTTTTCAACATTTCTCTCGGCGTTTTATTTGAAGTCTCACGTTCCTATAAGAGTTTGAGATCATTTCTCAAGGCAAATCGAGAGTGTTTTTATATTCAATTAGTCAAGTAGAGAGATTTTTTAAAGGCTGTTAATAGTTCGGTATGAACCACACCAAGTTCATTCAGGAGTGTTTTCAATACGTTAAACTTCACGGCATGTTTTAATATTAATATTCTAATCATTTTAAAAGTTTCTATATTCAATAAAAAATTATCGATATGTTACGTAAAATGAAATGAATCTAGGGGTAAAATAAACATTTAAGATATGATATGTGTACTAATATAGACATTTGTTTGCAGTTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAATTTTCTCGGGAAAACGTGTAAAAAAACATGACAAACTAAAATGAAA</genome_strand>
        <mrna_strand>ACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>140</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2654" PGL_stop="3888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2654" e_stop="2726"/>
            <exon e_start="2813" e_stop="3030"/>
            <exon e_start="3133" e_stop="3683"/>
            <exon e_start="3764" e_stop="3888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.960"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="2654" e_stop="2726" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="2727" i_stop="2812" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2813" e_stop="3030" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3031" i_stop="3132" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="3133" e_stop="3683" e_length="551"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="3684" i_stop="3763" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="3764" e_stop="3888" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2654" stop="2726"/>
              <exon start="2813" stop="3030"/>
              <exon start="3133" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2654" stop="2726"/>
              <exon start="2813" stop="3030"/>
              <exon start="3133" stop="3263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2988" stop="3030"/>
              <exon start="3133" stop="3683"/>
              <exon start="3764" stop="3888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3187" stop="3657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAGAATTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG : TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA : GGAATGCTTGTTCTTTGGCTCACAACAATTTTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTCTTGTTAGACCTTGTTCCATAGCATTGGGTGCCGACCAATTGGAGAACAAAGAAAATCCAGATAACGAGAGACTTATGGATAGCTATTTCAATTGGTTCTATGCCAGTATCGGAGTTGCAATTGTTTTTGCAGTTACTGTAATTGTTTATATCCAAGACCATTTTGGTTGGCAAGTTGGGTTTGGTGTTCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGATTGGATCTCCTCATTATATCAAAGCAAAACCTAAAGGGAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAACACCTGAATCAAAGCTCCTCGAACCATCCACGGACTTCAG : GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCG</gDNA_template>
            <first_frame> E  K  E  F  L  L  N  H  S  Q  N  S  T  K  G  G  L  K  T  I  P  F  I  I   : V  N  E  S  C  E  R  L  A  S  F  G  L  Q  P  N  M  I  I  Y  I  T  K  F  Y  N  I  N  A  A  H  A  S  V  L  I  N  L  W  S  A  V  S  N  V  L  S  I  L  G  A  F  I  S  D  S  Y  I  G  R  F  R  A  V  A  I  G  T  I  S  S  L  I  :  G  M  L  V  L  W  L  T  T  I  F  P  Q  L  R  P  L  P  C  G  Q  Y  Q  H  D  C  N  G  T  T  A  A  Q  L  A  A  I  L  C  S  F  G  L  I  S  I  G  A  G  L  V  R  P  C  S  I  A  L  G  A  D  Q  L  E  N  K  E  N  P  D  N  E  R  L  M  D  S  Y  F  N  W  F  Y  A  S  I  G  V  A  I  V  F  A  V  T  V  I  V  Y  I  Q  D  H  F  G  W  Q  V  G  F  G  V  P  A  L  L  M  V  L  S  V  S  V  F  L  I  G  S  P  H  Y  I  K  A  K  P  K  G  S  L  F  T  G  L  F  Q  V  A  V  A  A  F  R  K  R  H  I  N  V  Q  L  N  Y  N  D  D  S  Y  Y  K  T  P  E  S  K  L  L  E  P  S  T  D  F  R :   C  L  N  R  A  C  I  I  E  D  P  N  M  E  L  K  P  D  G  K  A  S  D  P  W  S  L  C  S  V  E  Q  V  K  I  M  K  C  F  L  T  </first_frame>
            <second_frame>  K  K  N  F  Y  *  I  T  H  K  I  Q  Q  R  E  V  *  K  P  F  L  S  S  *  :  *  M  N  H  V  R  D  W  Q  V  L  V  C  N  Q  I  *  *  S  T  *  Q  N  F  T  T  L  M  L  L  M  L  Q  F  *  L  I  Y  G  Q  Q  F  Q  M  Y  C  L  F  W  E  L  L  F  L  I  L  T  L  E  G  L  G  L  W  L  L  E  P  S  L  A  *  * :   E  C  L  F  F  G  S  Q  Q  F  F  H  N  S  G  R  Y  P  A  V  S  I  N  M  I  V  M  E  Q  Q  Q  H  N  L  L  Q  F  C  V  L  L  G  L  F  P  L  V  L  V  L  L  D  L  V  P  *  H  W  V  P  T  N  W  R  T  K  K  I  Q  I  T  R  D  L  W  I  A  I  S  I  G  S  M  P  V  S  E  L  Q  L  F  L  Q  L  L  *  L  F  I  S  K  T  I  L  V  G  K  L  G  L  V  F  L  L  C  S  W  F  Y  L  F  P  F  S  *  L  D  L  L  I  I  S  K  Q  N  L  K  G  V  C  S  L  D  C  F  K  *  Q  S  Q  P  S  E  K  D  I  S  T  F  N  *  I  I  M  T  T  P  T  I  K  H  L  N  Q  S  S  S  N  H  P  R  T  S   : G  V  *  I  E  L  A  *  L  K  I  L  T  W  S  *  N  L  M  E  K  L  Q  I  H  G  V  S  A  L  W  N  K  S  K  *  *  S  V  F  L  P </second_frame>
            <third_frame>   K  R  I  F  I  E  S  L  T  K  F  N  K  G  R  F  K  N  H  S  F  H  H  S :   E  *  I  M  *  E  I  G  K  F  W  F  A  T  K  Y  D  N  L  H  N  K  I  L  Q  H  *  C  C  S  C  F  S  F  D  *  F  M  V  S  S  F  K  C  I  V  Y  F  G  S  F  Y  F  *  F  L  H  W  K  V  *  G  C  G  Y  W  N  H  L  *  P  N   : R  N  A  C  S  L  A  H  N  N  F  S  T  T  Q  A  V  T  L  R  S  V  S  T  *  L  *  W  N  N  S  S  T  T  C  C  N  F  V  F  F  W  A  Y  F  H  W  C  W  S  C  *  T  L  F  H  S  I  G  C  R  P  I  G  E  Q  R  K  S  R  *  R  E  T  Y  G  *  L  F  Q  L  V  L  C  Q  Y  R  S  C  N  C  F  C  S  Y  C  N  C  L  Y  P  R  P  F  W  L  A  S  W  V  W  C  S  C  F  A  H  G  F  I  C  F  R  F  L  D  W  I  S  S  L  Y  Q  S  K  T  *  R  E  F  V  H  W  I  V  S  S  S  S  R  S  L  Q  K  K  T  Y  Q  R  S  I  E  L  *  *  R  L  L  L  *  N  T  *  I  K  A  P  R  T  I  H  G  L  Q  :  V  F  E  *  S  L  H  N  *  R  S  *  H  G  V  E  T  *  W  K  S  F  R  S  M  E  S  L  L  C  G  T  S  Q  N  N  E  V  F  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2654" stop="2726"/>
                    <exon start="2813" stop="3030"/>
                    <exon start="3133" stop="3683"/>
                    <exon start="3764" stop="3887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEFLLNHSQNSTKGGLKTIPFIIVNESCERLASFGLQPNMIIYITKFYNINAAHASVLINLWSAVSNVLSILGAFISDSYIGRFRAVAIGTISSLIGMLVLWLTTIFPQLRPLPCGQYQHDCNGTTAAQLAAILCSFGLISIGAGLVRPCSIALGADQLENKENPDNERLMDSYFNWFYASIGVAIVFAVTVIVYIQDHFGWQVGFGVPALLMVLSVSVFLIGSPHYIKAKPKGSLFTGLFQVAVAAFRKRHINVQLNYNDDSYYKTPESKLLEPSTDFRCLNRACIIEDPNMELKPDGKASDPWSLCSVEQVKIMKCFLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7954" PGL_stop="5964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7954" e_stop="7854"/>
            <exon e_start="7768" e_stop="7551"/>
            <exon e_start="7448" e_stop="6898"/>
            <exon e_start="6817" e_stop="5964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7954" e_stop="7854" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7853" i_stop="7769" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7768" e_stop="7551" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7550" i_stop="7449" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7448" e_stop="6898" e_length="551"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6897" i_stop="6818" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.928">
            <gDNA_exon_boundary e_start="6817" e_stop="5964" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7954" stop="7854"/>
              <exon start="7768" stop="7551"/>
              <exon start="7448" stop="7271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7954" stop="7854"/>
              <exon start="7768" stop="7551"/>
              <exon start="7448" stop="7318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7928" stop="7854"/>
              <exon start="7768" stop="7551"/>
              <exon start="7448" stop="7374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7593" stop="7551"/>
              <exon start="7448" stop="6898"/>
              <exon start="6817" stop="6693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7394" stop="6924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7131" stop="6898"/>
              <exon start="6817" stop="6133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6799" stop="5964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAAATGGGCAAAAACACTGAACAAGAAGAAGAGTTTTTATTGAATCACTCACAAAATTCAACAAAGGGAGGTTTAAAAACCATTCCTTTCATCATAG : TGAATGAATCATGTGAGAGATTGGCAAGTTTTGGTTTGCAACCAAATATGATAATCTACATAACAAAATTTTACAACATTAATGCTGCTCATGCTTCAGTTTTGATTAATTTATGGTCAGCAGTTTCAAATGTATTGTCTATTTTGGGAGCTTTTATTTCTGATTCTTACATTGGAAGGTTTAGGGCTGTGGCTATTGGAACCATCTCTAGCCTAATA : GGAATGCTTGTTCTTTGGCTCACAACAATATTTCCACAACTCAGGCCGTTACCCTGCGGTCAGTATCAACATGATTGTAATGGAACAACAGCAGCACAACTTGCTGCAATTTTGTGTTCTTTTGGGCTTATTTCCATTGGTGCTGGTTTTGTTAGACCTTGTTCCATTGCATTGGGTGCAGACCAATTGGGTAACAAAGAAAATCTAGATAATGAGAGACTTCTGGATAGCTATTTCAGTTGGTTCTATGCAAGTGTCGGAGTTTCAATTGTTCTTGCAGTTACTGTAATTGTTTATATCCAAGATCATTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTTCTTGGTTGGATCTCCTCATTATATCAAAGCAAAGCCTGAAGGTAGTTTGTTCACTGGATTGTTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATCAACGTTCAATTGAATTATAATGACGACTCCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG : GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTAACATGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCATGGAGTCTCTGCTCTGTGGAACAAGTCAAAATAATGAAGTGTTTTCTTACCGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTATCGTTCAGTCAACCACTATCGATATATCAACTACTGACCGTGGATAGACACATTACCCCTCGGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACTGTTCTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCATTGGTTCCTTTACTGTCAAGGTATACTGGACTGCCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTAGCTACAGTACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATGAATGCAGGGTTTGAGGATGACCCAAATGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTCTGAATGTGGTTGGACAGATTGAGTTCATATACAGTCTATTTCCAAAAACGATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTTGCGCTTTCCAACTTAATTAGTAGTCTCTTGGTGAGCGTGGTGGATAATATTACCTCAGCCAGATGCAACACAAGCTGGCTCGCGACCAACATAAATAGAGGTCACCTAGATTACTACTGCTGGCTAATGACTTTCTTATGTGTGATTAACTTCCTCTATTTTCTAGCTGTTTGTCGGTTTACTGATAAGCAAAAACATGATGGTAGGAGTAGCTTATTTCCTGAGG</gDNA_template>
            <first_frame> E  K  N  G  Q  K  H  *  T  R  R  R  V  F  I  E  S  L  T  K  F  N  K  G  R  F  K  N  H  S  F  H  H  S :   E  *  I  M  *  E  I  G  K  F  W  F  A  T  K  Y  D  N  L  H  N  K  I  L  Q  H  *  C  C  S  C  F  S  F  D  *  F  M  V  S  S  F  K  C  I  V  Y  F  G  S  F  Y  F  *  F  L  H  W  K  V  *  G  C  G  Y  W  N  H  L  *  P  N   : R  N  A  C  S  L  A  H  N  N  I  S  T  T  Q  A  V  T  L  R  S  V  S  T  *  L  *  W  N  N  S  S  T  T  C  C  N  F  V  F  F  W  A  Y  F  H  W  C  W  F  C  *  T  L  F  H  C  I  G  C  R  P  I  G  *  Q  R  K  S  R  *  *  E  T  S  G  *  L  F  Q  L  V  L  C  K  C  R  S  F  N  C  S  C  S  Y  C  N  C  L  Y  P  R  S  F  W  L  A  S  W  V  W  C  P  C  F  A  H  G  F  I  C  F  R  F  L  G  W  I  S  S  L  Y  Q  S  K  A  *  R  *  F  V  H  W  I  V  S  S  S  S  R  S  L  Q  K  K  T  Y  Q  R  S  I  E  L  *  *  R  L  L  L  *  S  T  *  I  K  A  P  R  T  I  H  *  L  Q  :  V  F  E  *  S  L  H  N  *  R  S  *  H  G  V  E  T  *  W  K  S  F  R  S  M  E  S  L  L  C  G  T  S  Q  N  N  E  V  F  S  Y  R  S  S  H  V  V  H  L  Y  Y  A  S  C  I  V  Q  S  T  T  I  D  I  S  T  T  D  R  G  *  T  H  Y  P  S  V  *  N  P  S  R  I  I  R  H  D  Y  C  S  F  F  D  N  L  D  G  F  L  R  S  C  I  G  S  F  T  V  K  V  Y  W  T  A  D  W  D  K  S  I  F  Q  N  G  D  W  L  I  S  G  H  C  S  Y  S  T  F  S  Y  N  R  N  H  T  T  Q  *  G  N  E  C  R  V  *  G  *  P  K  C  C  V  K  H  V  L  Y  V  V  C  T  T  V  G  T  I  R  G  G  *  G  S  E  C  G  W  T  D  *  V  H  I  Q  S  I  S  K  N  D  V  Q  L  C  S  S  S  L  H  V  W  P  C  A  F  Q  L  N  *  *  S  L  G  E  R  G  G  *  Y  Y  L  S  Q  M  Q  H  K  L  A  R  D  Q  H  K  *  R  S  P  R  L  L  L  L  A  N  D  F  L  M  C  D  *  L  P  L  F  S  S  C  L  S  V  Y  *  *  A  K  T  *  W  *  E  *  L  I  S  *   </first_frame>
            <second_frame>  K  K  M  G  K  N  T  E  Q  E  E  E  F  L  L  N  H  S  Q  N  S  T  K  G  G  L  K  T  I  P  F  I  I   : V  N  E  S  C  E  R  L  A  S  F  G  L  Q  P  N  M  I  I  Y  I  T  K  F  Y  N  I  N  A  A  H  A  S  V  L  I  N  L  W  S  A  V  S  N  V  L  S  I  L  G  A  F  I  S  D  S  Y  I  G  R  F  R  A  V  A  I  G  T  I  S  S  L  I  :  G  M  L  V  L  W  L  T  T  I  F  P  Q  L  R  P  L  P  C  G  Q  Y  Q  H  D  C  N  G  T  T  A  A  Q  L  A  A  I  L  C  S  F  G  L  I  S  I  G  A  G  F  V  R  P  C  S  I  A  L  G  A  D  Q  L  G  N  K  E  N  L  D  N  E  R  L  L  D  S  Y  F  S  W  F  Y  A  S  V  G  V  S  I  V  L  A  V  T  V  I  V  Y  I  Q  D  H  F  G  W  Q  V  G  F  G  V  P  A  L  L  M  V  L  S  V  S  V  F  L  V  G  S  P  H  Y  I  K  A  K  P  E  G  S  L  F  T  G  L  F  Q  V  A  V  A  A  F  R  K  R  H  I  N  V  Q  L  N  Y  N  D  D  S  Y  Y  K  A  P  E  S  K  L  L  E  P  S  T  D  F  R :   C  L  N  R  A  C  I  I  E  D  P  N  M  E  L  K  P  D  G  K  A  S  D  P  W  S  L  C  S  V  E  Q  V  K  I  M  K  C  F  L  T  V  L  P  M  W  S  T  C  I  M  L  L  V  S  F  S  Q  P  L  S  I  Y  Q  L  L  T  V  D  R  H  I  T  P  R  F  E  I  P  A  G  S  F  G  M  I  T  V  L  S  L  T  I  W  M  A  F  Y  D  R  A  L  V  P  L  L  S  R  Y  T  G  L  P  T  G  I  S  P  F  S  R  M  G  I  G  L  F  L  G  I  V  A  T  V  L  S  A  I  T  E  T  I  R  R  N  K  A  M  N  A  G  F  E  D  D  P  N  A  V  L  N  M  S  S  M  W  F  V  P  Q  L  A  L  Y  G  V  A  E  A  L  N  V  V  G  Q  I  E  F  I  Y  S  L  F  P  K  T  M  S  S  F  A  A  A  L  Y  T  F  G  L  A  L  S  N  L  I  S  S  L  L  V  S  V  V  D  N  I  T  S  A  R  C  N  T  S  W  L  A  T  N  I  N  R  G  H  L  D  Y  Y  C  W  L  M  T  F  L  C  V  I  N  F  L  Y  F  L  A  V  C  R  F  T  D  K  Q  K  H  D  G  R  S  S  L  F  P  E  </second_frame>
            <third_frame>   K  K  W  A  K  T  L  N  K  K  K  S  F  Y  *  I  T  H  K  I  Q  Q  R  E  V  *  K  P  F  L  S  S  *  :  *  M  N  H  V  R  D  W  Q  V  L  V  C  N  Q  I  *  *  S  T  *  Q  N  F  T  T  L  M  L  L  M  L  Q  F  *  L  I  Y  G  Q  Q  F  Q  M  Y  C  L  F  W  E  L  L  F  L  I  L  T  L  E  G  L  G  L  W  L  L  E  P  S  L  A  *  * :   E  C  L  F  F  G  S  Q  Q  Y  F  H  N  S  G  R  Y  P  A  V  S  I  N  M  I  V  M  E  Q  Q  Q  H  N  L  L  Q  F  C  V  L  L  G  L  F  P  L  V  L  V  L  L  D  L  V  P  L  H  W  V  Q  T  N  W  V  T  K  K  I  *  I  M  R  D  F  W  I  A  I  S  V  G  S  M  Q  V  S  E  F  Q  L  F  L  Q  L  L  *  L  F  I  S  K  I  I  L  V  G  K  L  G  L  V  S  L  L  C  S  W  F  Y  L  F  P  F  S  W  L  D  L  L  I  I  S  K  Q  S  L  K  V  V  C  S  L  D  C  F  K  *  Q  S  Q  P  S  E  K  D  I  S  T  F  N  *  I  I  M  T  T  P  T  I  K  H  L  N  Q  S  S  S  N  H  P  L  T  S   : G  V  *  I  E  L  A  *  L  K  I  L  T  W  S  *  N  L  M  E  K  L  Q  I  H  G  V  S  A  L  W  N  K  S  K  *  *  S  V  F  L  P  F  F  P  C  G  P  P  V  L  C  F  L  Y  R  S  V  N  H  Y  R  Y  I  N  Y  *  P  W  I  D  T  L  P  L  G  L  K  S  Q  Q  D  H  S  A  *  L  L  F  F  L  *  Q  S  G  W  L  F  T  I  V  H  W  F  L  Y  C  Q  G  I  L  D  C  R  L  G  *  V  H  F  P  E  W  G  L  A  Y  F  W  A  L  *  L  Q  Y  F  Q  L  *  Q  K  P  Y  D  A  I  R  Q  *  M  Q  G  L  R  M  T  Q  M  L  C  *  T  C  P  L  C  G  L  Y  H  S  W  H  Y  T  G  W  L  R  L  *  M  W  L  D  R  L  S  S  Y  T  V  Y  F  Q  K  R  C  P  A  L  Q  Q  L  F  T  R  L  A  L  R  F  P  T  *  L  V  V  S  W  *  A  W  W  I  I  L  P  Q  P  D  A  T  Q  A  G  S  R  P  T  *  I  E  V  T  *  I  T  T  A  G  *  *  L  S  Y  V  *  L  T  S  S  I  F  *  L  F  V  G  L  L  I  S  K  N  M  M  V  G  V  A  Y  F  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7953" stop="7854"/>
                    <exon start="7768" stop="7551"/>
                    <exon start="7448" stop="6898"/>
                    <exon start="6817" stop="5965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1722</number_coding_nucleotides>
                  <number_encoded_amino_acids>574</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMGKNTEQEEEFLLNHSQNSTKGGLKTIPFIIVNESCERLASFGLQPNMIIYITKFYNINAAHASVLINLWSAVSNVLSILGAFISDSYIGRFRAVAIGTISSLIGMLVLWLTTIFPQLRPLPCGQYQHDCNGTTAAQLAAILCSFGLISIGAGFVRPCSIALGADQLGNKENLDNERLLDSYFSWFYASVGVSIVLAVTVIVYIQDHFGWQVGFGVPALLMVLSVSVFLVGSPHYIKAKPEGSLFTGLFQVAVAAFRKRHINVQLNYNDDSYYKAPESKLLEPSTDFRCLNRACIIEDPNMELKPDGKASDPWSLCSVEQVKIMKCFLTVLPMWSTCIMLLVSFSQPLSIYQLLTVDRHITPRFEIPAGSFGMITVLSLTIWMAFYDRALVPLLSRYTGLPTGISPFSRMGIGLFLGIVATVLSAITETIRRNKAMNAGFEDDPNAVLNMSSMWFVPQLALYGVAEALNVVGQIEFIYSLFPKTMSSFAAALYTFGLALSNLISSLLVSVVDNITSARCNTSWLATNINRGHLDYYCWLMTFLCVINFLYFLAVCRFTDKQKHDGRSSLFPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13254" PGL_stop="15974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13254" e_stop="13430"/>
            <exon e_start="13517" e_stop="13734"/>
            <exon e_start="13871" e_stop="14421"/>
            <exon e_start="14774" e_stop="15974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13254" e_stop="13430" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13517" e_stop="13734" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="13871" e_stop="14421" e_length="551"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14422" i_stop="14773" i_length="352"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14774" e_stop="15974" e_length="1201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13254" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13323" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="13945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13325" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13331" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13331" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13370" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14188" stop="14421"/>
              <exon start="14774" stop="15458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14792" stop="15627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15158" stop="15826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15188" stop="15826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15303" stop="15892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15303" stop="15892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15566" stop="15974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15649" stop="15974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAGCATGCATATACATTTATTTATCTCTCAAAAACTTCTCTCTTTCTTCCACTCTCTTTGGAGTTAACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG : TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT : GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGTAGGAATTTCAATCTCTGTTGCAATTACTGTAATTGTTTATATCCAAGTGCAGTTTGGTTGGCAAGTTGGGTTTGGTGTCCCTGCTTTGCTCATGGTTTTATCTGTTTCCGTTTATTTAATTGGATCTCCTCTTTATATAAAACCAAAATCTGAAGGGAGTTTGTTCACTGGATTATTTCAAGTAGCAGTCGCAGCCTTCAGAAAAAGACATATTAATGTTCAGTTGAATTATAATGACGACTGCTACTATAAAGCACCTGAATCAAAGCTCCTCGAACCATCCACTGACTTCAG : GTGTTTGAATAGAGCTTGCATAATTGAAGATCCTCACGTGGAGTTGAAACCTGATGGAAAAGCTTCAGATCCGTGGAGTCTCTGCTTTGTGGAACAAGTCGAAATAATGAAGTGTTTTCTTAGAGTTCTTCCCATGTGGTCCACCTGTATTATGCTTCTTGTGTCGTTCGGTCAGCCACTTTCGATATATCAACTATTGACCGTGGATAGACACATTACTCCTCAGTTTGAAATCCCAGCAGGATCATTCGGCATGATTACCGTTTTTTCTTTGACAATCTGGATGGCTTTTTACGATCGTGCAGTGGTTCCTTTACTGTCTAGGTATACTGGACTGTCGACTGGGATAAGTCCATTTTCCAGAATGGGGATTGGCTTATTTCTGGGCATTGTGGGTACGACACTTTCAGCTATAACAGAAACCATACGACGCAATAAGGCAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATACGGGGTGGCTGAGGCTTTGAATGTGGTTGGACAGATCGAGTTTATATATAGTCTATTTCCAAAAACCATGTCCAGCTTTGCAGCAGCTCTTTACACGTTTGGCCTAGCGCTTGCCGGCTTAATTAACAGTCTCTTGGTGAGCGTGGTGGATAGTACTACCTCAGCTGGAGGCAACACAAGTTGGCTCGCCACAAACATAAACAGAGGTCATCTAGATTACTACTGCTGGCTAATAACTTTCTTATGTGTGATTAACTTCCTCTATTTTTTAGCCGTTTGTCGATTCACTGATCAGCATCACCATGATGGTAGGAGTAGCTTATTTCCTGATGCAGAAGAGGAACACTCTGAGAATAGGCGTTTTCATGGTGCGTAATGTGTACGCTATGTTTGTGTTTGAACATTTGCATGTATTGTAACTTCTCTTAAATCCTTGACCTAGAATAAATTGAGGGCTTCTGTCTTTAAGACAGAGAAGACGAGTGCCAAAAAACCTCACACATATGTCAATAAAATTTTTAGTTGATGAGTATTATTTTTCTTGATAGCTGTGTTAAGTTAGTTTAACAAGTAAAAATGAATGGATAGATTATGTAAATATCCATTTGTGTGGATTTATTTATTAAATATTTCTTAATTTTGTTTCTATTGTTATTTGTCATTTTTGACAAATCAAGAA</gDNA_template>
            <first_frame> F  L  A  C  I  Y  I  Y  L  S  L  K  N  F  S  L  S  S  T  L  F  G  V  N  K  E  E  R  K  W  G  I  N  Q  K  K  K  S  F  Y  *  I  T  H  K  I  Q  Q  R  V  V  *  K  P  F  L  S  L  *  :  *  M  N  H  V  R  E  *  Q  V  L  V  C  N  Q  T  *  Y  S  I  *  Q  N  F  T  T  W  M  L  L  V  L  Q  F  C  *  I  Y  G  Q  H  F  Q  M  D  W  L  F  L  G  L  L  F  L  I  L  T  L  E  D  L  G  L  L  L  L  E  L  S  P  V  *  L :   E  *  Y  F  F  G  S  L  Q  Y  F  H  N  S  G  R  Y  P  V  V  S  I  N  L  I  V  T  Q  Q  H  Q  R  N  L  L  *  F  C  V  L  L  G  L  L  P  L  V  L  V  L  L  D  L  V  Q  *  H  L  V  L  I  N  *  R  T  N  E  I  Q  I  M  R  E  L  W  I  P  I  S  T  G  F  M  L  V  *  E  F  Q  S  L  L  Q  L  L  *  L  F  I  S  K  C  S  L  V  G  K  L  G  L  V  S  L  L  C  S  W  F  Y  L  F  P  F  I  *  L  D  L  L  F  I  *  N  Q  N  L  K  G  V  C  S  L  D  Y  F  K  *  Q  S  Q  P  S  E  K  D  I  L  M  F  S  *  I  I  M  T  T  A  T  I  K  H  L  N  Q  S  S  S  N  H  P  L  T  S   : G  V  *  I  E  L  A  *  L  K  I  L  T  W  S  *  N  L  M  E  K  L  Q  I  R  G  V  S  A  L  W  N  K  S  K  *  *  S  V  F  L  E  F  F  P  C  G  P  P  V  L  C  F  L  C  R  S  V  S  H  F  R  Y  I  N  Y  *  P  W  I  D  T  L  L  L  S  L  K  S  Q  Q  D  H  S  A  *  L  P  F  F  L  *  Q  S  G  W  L  F  T  I  V  Q  W  F  L  Y  C  L  G  I  L  D  C  R  L  G  *  V  H  F  P  E  W  G  L  A  Y  F  W  A  L  W  V  R  H  F  Q  L  *  Q  K  P  Y  D  A  I  R  Q  S  T  Q  G  L  R  M  I  R  T  L  C  *  T  C  P  L  C  G  L  Y  H  S  W  H  Y  T  G  W  L  R  L  *  M  W  L  D  R  S  S  L  Y  I  V  Y  F  Q  K  P  C  P  A  L  Q  Q  L  F  T  R  L  A  *  R  L  P  A  *  L  T  V  S  W  *  A  W  W  I  V  L  P  Q  L  E  A  T  Q  V  G  S  P  Q  T  *  T  E  V  I  *  I  T  T  A  G  *  *  L  S  Y  V  *  L  T  S  S  I  F  *  P  F  V  D  S  L  I  S  I  T  M  M  V  G  V  A  Y  F  L  M  Q  K  R  N  T  L  R  I  G  V  F  M  V  R  N  V  Y  A  M  F  V  F  E  H  L  H  V  L  *  L  L  L  N  P  *  P  R  I  N  *  G  L  L  S  L  R  Q  R  R  R  V  P  K  N  L  T  H  M  S  I  K  F  L  V  D  E  Y  Y  F  S  *  *  L  C  *  V  S  L  T  S  K  N  E  W  I  D  Y  V  N  I  H  L  C  G  F  I  Y  *  I  F  L  N  F  V  S  I  V  I  C  H  F  *  Q  I  K   </first_frame>
            <second_frame>  F  *  H  A  Y  T  F  I  Y  L  S  K  T  S  L  F  L  P  L  S  L  E  L  T  R  K  K  E  N  G  E  *  T  R  R  R  R  V  F  T  K  S  L  T  K  F  N  K  G  W  C  K  N  H  S  F  H  Y  S :   E  *  I  M  *  E  S  S  K  F  W  F  A  T  K  H  D  T  L  Y  N  K  I  L  Q  H  G  C  C  S  C  F  S  F  V  E  F  M  V  S  T  F  K  W  I  G  Y  F  W  G  F  Y  F  *  F  L  H  W  K  I  *  G  Y  C  Y  W  N  Y  L  Q  S  N   : W  N  D  T  S  L  A  H  Y  N  I  S  T  T  Q  A  V  T  L  W  S  V  S  T  *  L  *  R  S  N  I  N  A  T  C  C  N  F  V  F  F  W  A  Y  C  H  W  C  W  F  C  *  T  L  F  S  S  I  W  C  *  S  I  R  E  Q  T  K  S  R  *  *  E  S  Y  G  Y  L  F  Q  L  V  L  C  *  C  R  N  F  N  L  C  C  N  Y  C  N  C  L  Y  P  S  A  V  W  L  A  S  W  V  W  C  P  C  F  A  H  G  F  I  C  F  R  L  F  N  W  I  S  S  L  Y  K  T  K  I  *  R  E  F  V  H  W  I  I  S  S  S  S  R  S  L  Q  K  K  T  Y  *  C  S  V  E  L  *  *  R  L  L  L  *  S  T  *  I  K  A  P  R  T  I  H  *  L  Q  :  V  F  E  *  S  L  H  N  *  R  S  S  R  G  V  E  T  *  W  K  S  F  R  S  V  E  S  L  L  C  G  T  S  R  N  N  E  V  F  S  *  S  S  S  H  V  V  H  L  Y  Y  A  S  C  V  V  R  S  A  T  F  D  I  S  T  I  D  R  G  *  T  H  Y  S  S  V  *  N  P  S  R  I  I  R  H  D  Y  R  F  F  F  D  N  L  D  G  F  L  R  S  C  S  G  S  F  T  V  *  V  Y  W  T  V  D  W  D  K  S  I  F  Q  N  G  D  W  L  I  S  G  H  C  G  Y  D  T  F  S  Y  N  R  N  H  T  T  Q  *  G  N  Q  R  R  V  *  G  *  S  E  R  C  V  K  H  V  L  Y  V  V  C  T  T  V  G  T  I  R  G  G  *  G  F  E  C  G  W  T  D  R  V  Y  I  *  S  I  S  K  N  H  V  Q  L  C  S  S  S  L  H  V  W  P  S  A  C  R  L  N  *  Q  S  L  G  E  R  G  G  *  Y  Y  L  S  W  R  Q  H  K  L  A  R  H  K  H  K  Q  R  S  S  R  L  L  L  L  A  N  N  F  L  M  C  D  *  L  P  L  F  F  S  R  L  S  I  H  *  S  A  S  P  *  W  *  E  *  L  I  S  *  C  R  R  G  T  L  *  E  *  A  F  S  W  C  V  M  C  T  L  C  L  C  L  N  I  C  M  Y  C  N  F  S  *  I  L  D  L  E  *  I  E  G  F  C  L  *  D  R  E  D  E  C  Q  K  T  S  H  I  C  Q  *  N  F  *  L  M  S  I  I  F  L  D  S  C  V  K  L  V  *  Q  V  K  M  N  G  *  I  M  *  I  S  I  C  V  D  L  F  I  K  Y  F  L  I  L  F  L  L  L  F  V  I  F  D  K  S  R  </second_frame>
            <third_frame>   F  S  M  H  I  H  L  F  I  S  Q  K  L  L  S  F  F  H  S  L  W  S  *  Q  G  R  K  K  M  G  N  K  P  E  E  E  E  F  L  L  N  H  S  Q  N  S  T  K  G  G  V  K  T  I  P  F  I  I   : V  N  E  S  C  E  R  V  A  S  F  G  L  Q  P  N  M  I  L  Y  I  T  K  F  Y  N  M  D  A  A  R  A  S  V  L  L  N  L  W  S  A  L  S  N  G  L  A  I  F  G  A  F  I  S  D  S  Y  I  G  R  F  R  A  I  A  I  G  T  I  S  S  L  I  :  G  M  I  L  L  W  L  T  T  I  F  P  Q  L  R  P  L  P  C  G  Q  Y  Q  L  D  C  N  A  A  T  S  T  Q  L  A  V  I  L  C  S  F  G  L  I  A  I  G  A  G  F  V  R  P  C  S  V  A  F  G  A  D  Q  L  E  N  K  R  N  P  D  N  E  R  V  M  D  T  Y  F  N  W  F  Y  A  S  V  G  I  S  I  S  V  A  I  T  V  I  V  Y  I  Q  V  Q  F  G  W  Q  V  G  F  G  V  P  A  L  L  M  V  L  S  V  S  V  Y  L  I  G  S  P  L  Y  I  K  P  K  S  E  G  S  L  F  T  G  L  F  Q  V  A  V  A  A  F  R  K  R  H  I  N  V  Q  L  N  Y  N  D  D  C  Y  Y  K  A  P  E  S  K  L  L  E  P  S  T  D  F  R :   C  L  N  R  A  C  I  I  E  D  P  H  V  E  L  K  P  D  G  K  A  S  D  P  W  S  L  C  F  V  E  Q  V  E  I  M  K  C  F  L  R  V  L  P  M  W  S  T  C  I  M  L  L  V  S  F  G  Q  P  L  S  I  Y  Q  L  L  T  V  D  R  H  I  T  P  Q  F  E  I  P  A  G  S  F  G  M  I  T  V  F  S  L  T  I  W  M  A  F  Y  D  R  A  V  V  P  L  L  S  R  Y  T  G  L  S  T  G  I  S  P  F  S  R  M  G  I  G  L  F  L  G  I  V  G  T  T  L  S  A  I  T  E  T  I  R  R  N  K  A  I  N  A  G  F  E  D  D  P  N  A  V  L  N  M  S  S  M  W  F  V  P  Q  L  A  L  Y  G  V  A  E  A  L  N  V  V  G  Q  I  E  F  I  Y  S  L  F  P  K  T  M  S  S  F  A  A  A  L  Y  T  F  G  L  A  L  A  G  L  I  N  S  L  L  V  S  V  V  D  S  T  T  S  A  G  G  N  T  S  W  L  A  T  N  I  N  R  G  H  L  D  Y  Y  C  W  L  I  T  F  L  C  V  I  N  F  L  Y  F  L  A  V  C  R  F  T  D  Q  H  H  H  D  G  R  S  S  L  F  P  D  A  E  E  E  H  S  E  N  R  R  F  H  G  A  *  C  V  R  Y  V  C  V  *  T  F  A  C  I  V  T  S  L  K  S  L  T  *  N  K  L  R  A  S  V  F  K  T  E  K  T  S  A  K  K  P  H  T  Y  V  N  K  I  F  S  *  *  V  L  F  F  L  I  A  V  L  S  *  F  N  K  *  K  *  M  D  R  L  C  K  Y  P  F  V  W  I  Y  L  L  N  I  S  *  F  C  F  Y  C  Y  L  S  F  L  T  N  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13325" stop="13430"/>
                    <exon start="13517" stop="13734"/>
                    <exon start="13871" stop="14421"/>
                    <exon start="14774" stop="15671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1770</number_coding_nucleotides>
                  <number_encoded_amino_acids>590</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRKKMGNKPEEEEFLLNHSQNSTKGGVKTIPFIIVNESCERVASFGLQPNMILYITKFYNMDAARASVLLNLWSALSNGLAIFGAFISDSYIGRFRAIAIGTISSLIGMILLWLTTIFPQLRPLPCGQYQLDCNAATSTQLAVILCSFGLIAIGAGFVRPCSVAFGADQLENKRNPDNERVMDTYFNWFYASVGISISVAITVIVYIQVQFGWQVGFGVPALLMVLSVSVYLIGSPLYIKPKSEGSLFTGLFQVAVAAFRKRHINVQLNYNDDCYYKAPESKLLEPSTDFRCLNRACIIEDPHVELKPDGKASDPWSLCFVEQVEIMKCFLRVLPMWSTCIMLLVSFGQPLSIYQLLTVDRHITPQFEIPAGSFGMITVFSLTIWMAFYDRAVVPLLSRYTGLSTGISPFSRMGIGLFLGIVGTTLSAITETIRRNKAINAGFEDDPNAVLNMSSMWFVPQLALYGVAEALNVVGQIEFIYSLFPKTMSSFAAALYTFGLALAGLINSLLVSVVDSTTSAGGNTSWLATNINRGHLDYYCWLITFLCVINFLYFLAVCRFTDQHHHDGRSSLFPDAEEEHSENRRFHGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13323" e_stop="13430"/>
            <exon e_start="13517" e_stop="13734"/>
            <exon e_start="13871" e_stop="14106"/>
            <exon e_start="15214" e_stop="15295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13323" e_stop="13430" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13431" i_stop="13516" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13517" e_stop="13734" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13735" i_stop="13870" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13871" e_stop="14106" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14107" i_stop="15213" i_length="1107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15214" e_stop="15295" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13323" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="13945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13329" stop="13430"/>
              <exon start="13517" stop="13734"/>
              <exon start="13871" stop="14106"/>
              <exon start="15214" stop="15295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAGGAAGAAAGAAAATGGGGAATAAACCAGAAGAAGAAGAGTTTTTACTAAATCACTCACAAAATTCAACAAAGGGTGGTGTAAAAACCATTCCTTTCATTATAG : TGAATGAATCATGTGAGAGAGTAGCAAGTTTTGGTTTGCAACCAAACATGATACTCTATATAACAAAATTTTACAACATGGATGCTGCTCGTGCTTCAGTTTTGTTGAATTTATGGTCAGCACTTTCAAATGGATTGGCTATTTTTGGGGCTTTTATTTCTGATTCTTACATTGGAAGATTTAGGGCTATTGCTATTGGAACTATCTCCAGTCTAATT : GGAATGATACTTCTTTGGCTCACTACAATATTTCCACAACTCAGGCCGTTACCCTGTGGTCAGTATCAACTTGATTGTAACGCAGCAACATCAACGCAACTTGCTGTAATTTTGTGTTCTTTTGGGCTTATTGCCATTGGTGCTGGTTTTGTTAGACCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCCAGATAATGAGAGAGTTATGGATACCTATTT : CAATCAACGCAGGGTTTGAGGATGATCCGAACGCTGTGTTAAACATGTCCTCTATGTGGTTTGTACCACAGTTGGCACTATA</gDNA_template>
            <first_frame> N  K  E  E  R  K  W  G  I  N  Q  K  K  K  S  F  Y  *  I  T  H  K  I  Q  Q  R  V  V  *  K  P  F  L  S  L  *  :  *  M  N  H  V  R  E  *  Q  V  L  V  C  N  Q  T  *  Y  S  I  *  Q  N  F  T  T  W  M  L  L  V  L  Q  F  C  *  I  Y  G  Q  H  F  Q  M  D  W  L  F  L  G  L  L  F  L  I  L  T  L  E  D  L  G  L  L  L  L  E  L  S  P  V  *  L :   E  *  Y  F  F  G  S  L  Q  Y  F  H  N  S  G  R  Y  P  V  V  S  I  N  L  I  V  T  Q  Q  H  Q  R  N  L  L  *  F  C  V  L  L  G  L  L  P  L  V  L  V  L  L  D  L  V  Q  *  H  L  V  L  I  N  *  R  T  N  E  I  Q  I  M  R  E  L  W  I  P  I   : S  I  N  A  G  F  E  D  D  P  N  A  V  L  N  M  S  S  M  W  F  V  P  Q  L  A  L   </first_frame>
            <second_frame>  T  R  K  K  E  N  G  E  *  T  R  R  R  R  V  F  T  K  S  L  T  K  F  N  K  G  W  C  K  N  H  S  F  H  Y  S :   E  *  I  M  *  E  S  S  K  F  W  F  A  T  K  H  D  T  L  Y  N  K  I  L  Q  H  G  C  C  S  C  F  S  F  V  E  F  M  V  S  T  F  K  W  I  G  Y  F  W  G  F  Y  F  *  F  L  H  W  K  I  *  G  Y  C  Y  W  N  Y  L  Q  S  N   : W  N  D  T  S  L  A  H  Y  N  I  S  T  T  Q  A  V  T  L  W  S  V  S  T  *  L  *  R  S  N  I  N  A  T  C  C  N  F  V  F  F  W  A  Y  C  H  W  C  W  F  C  *  T  L  F  S  S  I  W  C  *  S  I  R  E  Q  T  K  S  R  *  *  E  S  Y  G  Y  L  F  :  Q  S  T  Q  G  L  R  M  I  R  T  L  C  *  T  C  P  L  C  G  L  Y  H  S  W  H  Y  </second_frame>
            <third_frame>   Q  G  R  K  K  M  G  N  K  P  E  E  E  E  F  L  L  N  H  S  Q  N  S  T  K  G  G  V  K  T  I  P  F  I  I   : V  N  E  S  C  E  R  V  A  S  F  G  L  Q  P  N  M  I  L  Y  I  T  K  F  Y  N  M  D  A  A  R  A  S  V  L  L  N  L  W  S  A  L  S  N  G  L  A  I  F  G  A  F  I  S  D  S  Y  I  G  R  F  R  A  I  A  I  G  T  I  S  S  L  I  :  G  M  I  L  L  W  L  T  T  I  F  P  Q  L  R  P  L  P  C  G  Q  Y  Q  L  D  C  N  A  A  T  S  T  Q  L  A  V  I  L  C  S  F  G  L  I  A  I  G  A  G  F  V  R  P  C  S  V  A  F  G  A  D  Q  L  E  N  K  R  N  P  D  N  E  R  V  M  D  T  Y  F :   N  Q  R  R  V  *  G  *  S  E  R  C  V  K  H  V  L  Y  V  V  C  T  T  V  G  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13325" stop="13430"/>
                    <exon start="13517" stop="13734"/>
                    <exon start="13871" stop="14106"/>
                    <exon start="15214" stop="15232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRKKMGNKPEEEEFLLNHSQNSTKGGVKTIPFIIVNESCERVASFGLQPNMILYITKFYNMDAARASVLLNLWSALSNGLAIFGAFISDSYIGRFRAIAIGTISSLIGMILLWLTTIFPQLRPLPCGQYQLDCNAATSTQLAVILCSFGLIAIGAGFVRPCSVAFGADQLENKRNPDNERVMDTYFNQRRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19978" PGL_stop="21927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19978" e_stop="20924"/>
            <exon e_start="21914" e_stop="21927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.887" acc_prob="0.575" e_score="0.999"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="19978" e_stop="20924" e_length="947"/>
          </exon>
          <intron i_serial="1" don_prob="0.887" acc_prob="0.575">
            <gDNA_intron_boundary i_start="20925" i_stop="21913" i_length="989"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="21914" e_stop="21927" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19978" stop="20824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20006" stop="20577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20278" stop="20924"/>
              <exon start="21914" stop="21927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20327" stop="20737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20397" stop="20732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTACGACCGTGTTTTGGTCCCTTTGCTATCTAAATATACTGGACGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGCTTATTAGTCTCGTGCATGTCTATGGCATTGTCTGCAATAACAGAAAGCATAAGACAAAAAAAGGCAATAGAGGAAGGGCATGAGGACGACCCACATGCTTTAGTGAACATGTCTGCTATGTGGCTCGTGCCACAGTATTTACTACTCGGAGTGGCTGAGGCAGCCCATGCAGTTGGACAGATTGAGTTCTTCTACTCTCTATTTCCCAAAAGCATGGCTAGCATCGCGTCAGCTATGTACACTATTGGAACTGCTGTGTCGAGTTTGTTTGGAAGTATTCTGGTGAGTGGTGTGGATTGGCTTACATCAACGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACTTGGATTACTATTTCTGGCTACTTGCTTTTTTGAGTTTGCTCAACTTTTTCTATTTTGTGATGGTCTGCCGGTTATATGAAACTGGGAATGATGGAAGCAGTAGGTTATCTCATGTGGCTGATGAGGAAGAATGCGACTATAGACTCTTATCTGAATCTTGATGATATGTTGTACTGCATCCTTGAATGATCCAACTACAACTAATTTAGGCAGTAGAGTGTTTTCATATATATTTTGAAGTATGTTGTGAATTTCCTCAGACAAAATTTTGGATATCAGATTGTCTTTTGTCGAATGTAGGCTTAAGAAAATGGTACTTGTTGGATTTTAAGCATCTTAATAGTATTTTAAAGTGCATAATTCCTAATGAGAAATGTCAAATTTATAGCTGCACGTTTGAAGCATATGTTGTGCAGCATTTGAGTTGTCATTTGATGACATTATATGCTCAATTACTTGTATTCGTAGTTGAATATGGTCATTAGTTGTTAGTAACTCAG : AGAAACAAAGTGAA</gDNA_template>
            <first_frame> L  F  T  T  V  F  W  S  L  C  Y  L  N  I  L  D  G  Q  E  G  *  V  L  L  P  E  W  E  L  A  Y  *  S  R  A  C  L  W  H  C  L  Q  *  Q  K  A  *  D  K  K  R  Q  *  R  K  G  M  R  T  T  H  M  L  *  *  T  C  L  L  C  G  S  C  H  S  I  Y  Y  S  E  W  L  R  Q  P  M  Q  L  D  R  L  S  S  S  T  L  Y  F  P  K  A  W  L  A  S  R  Q  L  C  T  L  L  E  L  L  C  R  V  C  L  E  V  F  W  *  V  V  W  I  G  L  H  Q  R  E  V  K  R  A  G  F  L  A  T  L  I  R  V  T  W  I  T  I  S  G  Y  L  L  F  *  V  C  S  T  F  S  I  L  *  W  S  A  G  Y  M  K  L  G  M  M  E  A  V  G  Y  L  M  W  L  M  R  K  N  A  T  I  D  S  Y  L  N  L  D  D  M  L  Y  C  I  L  E  *  S  N  Y  N  *  F  R  Q  *  S  V  F  I  Y  I  L  K  Y  V  V  N  F  L  R  Q  N  F  G  Y  Q  I  V  F  C  R  M  *  A  *  E  N  G  T  C  W  I  L  S  I  L  I  V  F  *  S  A  *  F  L  M  R  N  V  K  F  I  A  A  R  L  K  H  M  L  C  S  I  *  V  V  I  *  *  H  Y  M  L  N  Y  L  Y  S  *  L  N  M  V  I  S  C  *  *  L  R :   E  T  K  *  </first_frame>
            <second_frame>  F  L  R  P  C  F  G  P  F  A  I  *  I  Y  W  T  A  K  R  A  K  S  C  Y  P  N  G  N  W  L  I  S  L  V  H  V  Y  G  I  V  C  N  N  R  K  H  K  T  K  K  G  N  R  G  R  A  *  G  R  P  T  C  F  S  E  H  V  C  Y  V  A  R  A  T  V  F  T  T  R  S  G  *  G  S  P  C  S  W  T  D  *  V  L  L  L  S  I  S  Q  K  H  G  *  H  R  V  S  Y  V  H  Y  W  N  C  C  V  E  F  V  W  K  Y  S  G  E  W  C  G  L  A  Y  I  N  G  R  *  N  E  L  A  F  *  Q  H  *  *  G  S  L  G  L  L  F  L  A  T  C  F  F  E  F  A  Q  L  F  L  F  C  D  G  L  P  V  I  *  N  W  E  *  W  K  Q  *  V  I  S  C  G  *  *  G  R  M  R  L  *  T  L  I  *  I  L  M  I  C  C  T  A  S  L  N  D  P  T  T  T  N  L  G  S  R  V  F  S  Y  I  F  *  S  M  L  *  I  S  S  D  K  I  L  D  I  R  L  S  F  V  E  C  R  L  K  K  M  V  L  V  G  F  *  A  S  *  *  Y  F  K  V  H  N  S  *  *  E  M  S  N  L  *  L  H  V  *  S  I  C  C  A  A  F  E  L  S  F  D  D  I  I  C  S  I  T  C  I  R  S  *  I  W  S  L  V  V  S  N  S   : E  K  Q  S  E </second_frame>
            <third_frame>   F  Y  D  R  V  L  V  P  L  L  S  K  Y  T  G  R  P  R  G  L  S  P  V  T  R  M  G  I  G  L  L  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  Q  K  K  A  I  E  E  G  H  E  D  D  P  H  A  L  V  N  M  S  A  M  W  L  V  P  Q  Y  L  L  L  G  V  A  E  A  A  H  A  V  G  Q  I  E  F  F  Y  S  L  F  P  K  S  M  A  S  I  A  S  A  M  Y  T  I  G  T  A  V  S  S  L  F  G  S  I  L  V  S  G  V  D  W  L  T  S  T  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  Y  F  W  L  L  A  F  L  S  L  L  N  F  F  Y  F  V  M  V  C  R  L  Y  E  T  G  N  D  G  S  S  R  L  S  H  V  A  D  E  E  E  C  D  Y  R  L  L  S  E  S  *  *  Y  V  V  L  H  P  *  M  I  Q  L  Q  L  I  *  A  V  E  C  F  H  I  Y  F  E  V  C  C  E  F  P  Q  T  K  F  W  I  S  D  C  L  L  S  N  V  G  L  R  K  W  Y  L  L  D  F  K  H  L  N  S  I  L  K  C  I  I  P  N  E  K  C  Q  I  Y  S  C  T  F  E  A  Y  V  V  Q  H  L  S  C  H  L  M  T  L  Y  A  Q  L  L  V  F  V  V  E  Y  G  H  *  L  L  V  T  Q  :  R  N  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19980" stop="20585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDRVLVPLLSKYTGRPRGLSPVTRMGIGLLVSCMSMALSAITESIRQKKAIEEGHEDDPHALVNMSAMWLVPQYLLLGVAEAAHAVGQIEFFYSLFPKSMASIASAMYTIGTAVSSLFGSILVSGVDWLTSTGGKTSWLSSNINKGHLDYYFWLLAFLSLLNFFYFVMVCRLYETGNDGSSRLSHVADEEECDYRLLSES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20634" stop="20909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVECFHIYFEVCCEFPQTKFWISDCLLSNVGLRKWYLLDFKHLNSILKCIIPNEKCQIYSCTFEAYVVQHLSCHLMTLYAQLLVFVVEYGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23159" PGL_stop="23946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23159" e_stop="23946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23159" e_stop="23946" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23159" stop="23916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23159" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23160" stop="23618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23187" stop="23910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23214" stop="23946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTCCACTGGTTTTGTGATCTTTGTGGACATGAATGTGTTTGCATTTTCCTTACTTCAAACAAAAACCATGGATAGACACATCTTCCCTCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTGACAATCTGGATTGCTTTCTACGACCGTGTTTTGGTCCCTTTACTATCAAAATATACTGGACAGCCAAGAGGGCTAAGTCCTGTCACCAGAATGGGGATTGGCTTAATAGCCTCCAGTATGTCTATTGCATTATCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTTGTGCCACAGTATGCACTACTCGGAGTGGCTGAGGCTGCCCATGCAGTTGGACAGATTGAGTTCTTGTATGCTCTATTACCGAAAAGCATGTCCAGCACTGCGTCAGCTATGTACACTGTTGGGACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGTGGATTGGCTTTCATCAACGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAACCAGGGTCACATTGATTACTTTTTCTGGCTACTTACATTTTTGAACTTGCTAAACTTGTTATATTTTTTGCTCATCTGCTGGTTTTATGAAGTTGGCAATAATGGGAGCAGTAATTCAGCTCATGTTGCTGAAGATAAAGAATGTGATTATAGACTCTTATCTGAATCATGATGATATGTTGGACTGCATTTTGAAT</gDNA_template>
            <first_frame> V  V  H  W  F  C  D  L  C  G  H  E  C  V  C  I  F  L  T  S  N  K  N  H  G  *  T  H  L  P  S  L  *  S  T  S  S  I  I  Q  C  V  L  D  Y  C  F  D  N  L  D  C  F  L  R  P  C  F  G  P  F  T  I  K  I  Y  W  T  A  K  R  A  K  S  C  H  Q  N  G  D  W  L  N  S  L  Q  Y  V  Y  C  I  I  S  N  N  R  K  H  K  T  T  K  G  N  R  G  R  T  *  G  R  S  K  C  F  S  E  H  V  C  Y  V  V  C  A  T  V  C  T  T  R  S  G  *  G  C  P  C  S  W  T  D  *  V  L  V  C  S  I  T  E  K  H  V  Q  H  C  V  S  Y  V  H  C  W  D  C  C  V  E  F  D  W  K  Y  S  G  E  *  C  G  L  A  F  I  N  G  R  *  N  E  L  A  F  E  Q  H  *  P  G  S  H  *  L  L  F  L  A  T  Y  I  F  E  L  A  K  L  V  I  F  F  A  H  L  L  V  L  *  S  W  Q  *  W  E  Q  *  F  S  S  C  C  *  R  *  R  M  *  L  *  T  L  I  *  I  M  M  I  C  W  T  A  F  *   </first_frame>
            <second_frame>  W  S  T  G  F  V  I  F  V  D  M  N  V  F  A  F  S  L  L  Q  T  K  T  M  D  R  H  I  F  P  H  F  E  V  P  A  A  S  F  S  V  F  L  I  I  A  L  T  I  W  I  A  F  Y  D  R  V  L  V  P  L  L  S  K  Y  T  G  Q  P  R  G  L  S  P  V  T  R  M  G  I  G  L  I  A  S  S  M  S  I  A  L  S  A  I  T  E  S  I  R  R  Q  R  A  I  E  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  V  A  E  A  A  H  A  V  G  Q  I  E  F  L  Y  A  L  L  P  K  S  M  S  S  T  A  S  A  M  Y  T  V  G  T  A  V  S  S  L  I  G  S  I  L  V  S  S  V  D  W  L  S  S  T  G  G  K  T  S  W  L  S  S  N  I  N  Q  G  H  I  D  Y  F  F  W  L  L  T  F  L  N  L  L  N  L  L  Y  F  L  L  I  C  W  F  Y  E  V  G  N  N  G  S  S  N  S  A  H  V  A  E  D  K  E  C  D  Y  R  L  L  S  E  S  *  *  Y  V  G  L  H  F  E  </second_frame>
            <third_frame>   G  P  L  V  L  *  S  L  W  T  *  M  C  L  H  F  P  Y  F  K  Q  K  P  W  I  D  T  S  S  L  T  L  K  Y  Q  Q  H  H  S  V  C  S  *  L  L  L  *  Q  S  G  L  L  S  T  T  V  F  W  S  L  Y  Y  Q  N  I  L  D  S  Q  E  G  *  V  L  S  P  E  W  G  L  A  *  *  P  P  V  C  L  L  H  Y  Q  Q  *  Q  K  A  *  D  D  K  G  Q  *  R  K  D  M  R  T  I  Q  M  L  *  *  T  C  L  L  C  G  L  C  H  S  M  H  Y  S  E  W  L  R  L  P  M  Q  L  D  R  L  S  S  C  M  L  Y  Y  R  K  A  C  P  A  L  R  Q  L  C  T  L  L  G  L  L  C  R  V  *  L  E  V  F  W  *  V  V  W  I  G  F  H  Q  R  E  V  K  R  A  G  F  R  A  T  L  T  R  V  T  L  I  T  F  S  G  Y  L  H  F  *  T  C  *  T  C  Y  I  F  C  S  S  A  G  F  M  K  L  A  I  M  G  A  V  I  Q  L  M  L  L  K  I  K  N  V  I  I  D  S  Y  L  N  H  D  D  M  L  D  C  I  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23160" stop="23921"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSTGFVIFVDMNVFAFSLLQTKTMDRHIFPHFEVPAASFSVFLIIALTIWIAFYDRVLVPLLSKYTGQPRGLSPVTRMGIGLIASSMSIALSAITESIRRQRAIEEGHEDDPNALVNMSAMWFVPQYALLGVAEAAHAVGQIEFLYALLPKSMSSTASAMYTVGTAVSSLIGSILVSSVDWLSSTGGKTSWLSSNINQGHIDYFFWLLTFLNLLNLLYFLLICWFYEVGNNGSSNSAHVAEDKECDYRLLSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24694" PGL_stop="26746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24694" e_stop="24730"/>
            <exon e_start="26361" e_stop="26722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.703"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.703">
            <gDNA_exon_boundary e_start="24694" e_stop="24730" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24731" i_stop="26360" i_length="1630"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="26361" e_stop="26722" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24694" stop="24730"/>
              <exon start="26361" stop="26722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24694" stop="24730"/>
              <exon start="26361" stop="26690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234933" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAATTTTTTTTGAATGATTTAATTGCAAAATGTA : AAAAATTATATGAAGATTGTAGAGGTGTTAACATACAAAAACACTTCATTATCTAACTTTATTAACTGTCAAGAATGCAGTACAACATATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATGCATCATTCCCAGTTTCATAAAACCGGCAGATGAAATGAAAATATAACAAGTTGAGCAAACTCAAAAAAGTAAGCAGCCAGAAATGGTAATCCAGGTGACCTTTATTAATGTTGCTAGAAAGCCAGCTTGTTTTACCTCCTGTTGATGTAAGCCAATCCTCACTACTCACAAGAAAACTTCCAATCAAACTCGACGCTGCATTCCCAACA</gDNA_template>
            <first_frame> F  *  F  F  L  N  D  L  I  A  K  C   : K  K  L  Y  E  D  C  R  G  V  N  I  Q  K  H  F  I  I  *  L  Y  *  L  S  R  M  Q  Y  N  I  Y  H  Q  D  S  C  K  S  L  *  S  H  S  S  S  S  A  T  *  G  N  A  S  F  P  V  S  *  N  R  Q  M  K  *  K  Y  N  K  L  S  K  L  K  K  V  S  S  Q  K  W  *  S  R  *  P  L  L  M  L  L  E  S  Q  L  V  L  P  P  V  D  V  S  Q  S  S  L  L  T  R  K  L  P  I  K  L  D  A  A  F  P  T </first_frame>
            <second_frame>  F  N  F  F  *  M  I  *  L  Q  N  V  :  K  N  Y  M  K  I  V  E  V  L  T  Y  K  N  T  S  L  S  N  F  I  N  C  Q  E  C  S  T  T  Y  I  I  K  I  H  V  R  V  Y  N  H  T  L  P  H  Q  P  H  E  V  M  H  H  S  Q  F  H  K  T  G  R  *  N  E  N  I  T  S  *  A  N  S  K  K  *  A  A  R  N  G  N  P  G  D  L  Y  *  C  C  *  K  A  S  L  F  Y  L  L  L  M  *  A  N  P  H  Y  S  Q  E  N  F  Q  S  N  S  T  L  H  S  Q   </second_frame>
            <third_frame>   L  I  F  F  E  *  F  N  C  K  M  * :   K  I  I  *  R  L  *  R  C  *  H  T  K  T  L  H  Y  L  T  L  L  T  V  K  N  A  V  Q  H  I  S  S  R  F  M  *  E  S  I  I  T  L  F  L  I  S  H  M  R  *  C  I  I  P  S  F  I  K  P  A  D  E  M  K  I  *  Q  V  E  Q  T  Q  K  S  K  Q  P  E  M  V  I  Q  V  T  F  I  N  V  A  R  K  P  A  C  F  T  S  C  *  C  K  P  I  L  T  T  H  K  K  T  S  N  Q  T  R  R  C  I  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24719" stop="24730"/>
                    <exon start="26361" stop="26546"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQNVKNYMKIVEVLTYKNTSLSNFINCQECSTTYIIKIHVRVYNHTLPHQPHEVMHHSQFHKTGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25202" e_stop="25232"/>
            <exon e_start="26383" e_stop="26746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.742"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.742">
            <gDNA_exon_boundary e_start="25202" e_stop="25232" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25233" i_stop="26382" i_length="1150"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="26383" e_stop="26746" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25202" stop="25232"/>
              <exon start="26383" stop="26746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285067" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTCTTTTTAACCTTTTTGCTTTTTTTA : AGGTGTTAACATACAAAAACACTTCATTATCTAACTTTATTAACTGTCAAGAATGCAGTACAACATATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATGCATCATTCCCAGTTTCATAAAACCGGCAGATGAAATGAAAATATAACAAGTTGAGCAAACTCAAAAAAGTAAGCAGCCAGAAATGGTAATCCAGGTGACCTTTATTAATGTTGCTAGAAAGCCAGCTTGTTTTACCTCCTGTTGATGTAAGCCAATCCTCACTACTCACAAGAAAACTTCCAATCAAACTCGACGCTGCATTCCCAACAGTGTCTATAGCAGACGCGATGCTT</gDNA_template>
            <first_frame> L  F  L  F  N  L  F  A  F  F   : K  V  L  T  Y  K  N  T  S  L  S  N  F  I  N  C  Q  E  C  S  T  T  Y  I  I  K  I  H  V  R  V  Y  N  H  T  L  P  H  Q  P  H  E  V  M  H  H  S  Q  F  H  K  T  G  R  *  N  E  N  I  T  S  *  A  N  S  K  K  *  A  A  R  N  G  N  P  G  D  L  Y  *  C  C  *  K  A  S  L  F  Y  L  L  L  M  *  A  N  P  H  Y  S  Q  E  N  F  Q  S  N  S  T  L  H  S  Q  Q  C  L  *  Q  T  R  C   </first_frame>
            <second_frame>  F  F  F  L  T  F  L  L  F  L  :  R  C  *  H  T  K  T  L  H  Y  L  T  L  L  T  V  K  N  A  V  Q  H  I  S  S  R  F  M  *  E  S  I  I  T  L  F  L  I  S  H  M  R  *  C  I  I  P  S  F  I  K  P  A  D  E  M  K  I  *  Q  V  E  Q  T  Q  K  S  K  Q  P  E  M  V  I  Q  V  T  F  I  N  V  A  R  K  P  A  C  F  T  S  C  *  C  K  P  I  L  T  T  H  K  K  T  S  N  Q  T  R  R  C  I  P  N  S  V  Y  S  R  R  D  A  </second_frame>
            <third_frame>   F  S  F  *  P  F  C  F  F  * :   G  V  N  I  Q  K  H  F  I  I  *  L  Y  *  L  S  R  M  Q  Y  N  I  Y  H  Q  D  S  C  K  S  L  *  S  H  S  S  S  S  A  T  *  G  N  A  S  F  P  V  S  *  N  R  Q  M  K  *  K  Y  N  K  L  S  K  L  K  K  V  S  S  Q  K  W  *  S  R  *  P  L  L  M  L  L  E  S  Q  L  V  L  P  P  V  D  V  S  Q  S  S  L  L  T  R  K  L  P  I  K  L  D  A  A  F  P  T  V  S  I  A  D  A  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25202" stop="25232"/>
                    <exon start="26383" stop="26546"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLFNLFAFFKVLTYKNTSLSNFINCQECSTTYIIKIHVRVYNHTLPHQPHEVMHHSQFHKTGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="28517" PGL_stop="26155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28517" e_stop="28366"/>
            <exon e_start="28282" e_stop="28065"/>
            <exon e_start="27979" e_stop="27426"/>
            <exon e_start="27343" e_stop="26367"/>
            <exon e_start="26171" e_stop="26155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.986"/>
          <exon-intron don_prob="0.508" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="0.928"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.940"/>
          <exon-only e_score="0.765"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="28517" e_stop="28366" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28365" i_stop="28283" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28282" e_stop="28065" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.508" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28064" i_stop="27980" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="27979" e_stop="27426" e_length="554"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27425" i_stop="27344" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="27343" e_stop="26367" e_length="977"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26366" i_stop="26172" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="0.765">
            <gDNA_exon_boundary e_start="26171" e_stop="26155" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28517" stop="28366"/>
              <exon start="28282" stop="28065"/>
              <exon start="27979" stop="27426"/>
              <exon start="27343" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28513" stop="28366"/>
              <exon start="28282" stop="28065"/>
              <exon start="27979" stop="27740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28439" stop="28366"/>
              <exon start="28282" stop="28065"/>
              <exon start="27979" stop="27812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27790" stop="27552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27514" stop="27426"/>
              <exon start="27343" stop="26511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27189" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27118" stop="26515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27118" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27118" stop="26550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27081" stop="26542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26764" stop="26388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26756" stop="26367"/>
              <exon start="26171" stop="26155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26746" stop="26382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTCCCTTTGTCTCTTTTAATCATATATCAAAGCAAAGAAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT : TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT : GGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAATTGGTACTATGCTAGCAATGGGGTTGCAACTATGATTGCAGTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGTAGGATTGTCCCAAGCATGTGTAGCAGCATTTAGAAAAAGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAG : GTGTTTAAATAGAGCTTGTATGATTGAAGATCGTGAAAGAGATTTGAATCCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAACCGGTTTAATGGTGTTTGTGGACATGAATGTATTCGCATTTGCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCGCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCCTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATCTGCCGGTTTTATGAAACTGGGAATGATGCATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATATGTTGTACTGCATTCTTGACAGTTAATAAAGTTAGATAATGAAGTGTTTTTGTATGTTAACACCTCTACAATCTTCATATA : CAAAAATAAAAAGTAAC</gDNA_template>
            <first_frame> S  L  S  L  C  L  F  *  S  Y  I  K  A  K  K  K  K  T  E  E  E  T  E  N  E  T  E  N  G  H  *  N  T  R  *  S  E  H  K  K  G  W  S  *  D  H  A  I  H  H  F :   E  *  I  I  *  K  D  S  K  L  W  F  T  N  K  S  D  N  L  F  D  D  I  L  *  H  E  C  C  Y  G  Y  *  Y  Y  W  I  M  G  C  T  F  R  W  I  S  Y  C  W  G  D  Y  C  R  L  L  L  G  S  I  *  C  C  C  L  W  N  H  L  H  F  Y   : W  N  G  Y  S  L  A  H  I  N  D  T  A  T  H  D  F  R  L  F  T  F  S  T  C  L  *  W  T  N  S  I  P  T  C  C  S  V  Y  I  I  C  V  Y  V  Y  W  S  W  F  C  *  T  L  F  Y  N  V  W  C  *  S  I  G  T  K  R  E  P  *  E  *  E  D  Y  *  E  I  F  Q  L  V  L  C  *  Q  W  G  C  N  Y  D  C  S  Y  H  N  Y  L  Y  S  R  S  L  W  L  A  N  W  L  W  R  P  C  F  T  H  G  F  V  Y  L  N  V  P  N  R  F  S  S  L  Y  Q  S  E  N  *  Y  K  Q  L  A  S  R  I  V  P  S  M  C  S  S  I  *  K  K  K  N  P  S  F  I  D  W  L  R  *  L  L  S  F  A  I  *  N  R  G  L  N  A  I  K  G  L  Q  :  V  F  K  *  S  L  Y  D  *  R  S  *  K  R  F  E  S  *  W  I  S  F  K  S  M  E  S  V  *  C  G  T  S  *  I  T  Q  G  S  Y  *  N  N  S  Y  V  V  N  R  F  N  G  V  C  G  H  E  C  I  R  I  C  C  T  S  N  K  D  N  G  *  T  Y  L  A  A  L  *  S  T  S  S  I  I  Q  C  V  P  D  Y  R  F  N  N  V  D  Y  F  L  *  S  S  F  G  P  F  A  I  *  I  Y  W  K  S  K  R  A  K  S  C  Y  P  N  E  N  W  V  N  S  L  L  Y  V  N  G  I  V  S  N  N  R  K  H  K  T  K  K  G  N  H  R  R  A  *  G  R  S  K  C  F  S  K  H  V  C  Y  V  V  R  A  T  V  C  T  T  R  Y  S  Y  G  Y  T  W  S  W  T  N  *  V  L  L  H  S  I  T  E  K  H  G  K  H  R  V  C  Y  R  H  C  W  E  C  S  V  E  F  D  W  K  F  S  C  E  *  *  G  L  A  Y  I  N  R  R  *  N  K  L  A  F  *  Q  H  *  *  R  S  P  G  L  P  F  L  A  A  Y  F  F  E  F  A  Q  L  V  I  F  S  F  H  L  P  V  L  *  N  W  E  *  C  I  T  S  C  G  *  *  G  R  V  *  L  *  T  L  T  *  I  L  M  I  Y  V  V  L  H  S  *  Q  L  I  K  L  D  N  E  V  F  L  Y  V  N  T  S  T  I  F  I  Y :   K  N  K  K  *  </first_frame>
            <second_frame>  L  F  P  F  V  S  F  N  H  I  S  K  Q  R  K  K  K  L  K  R  K  Q  R  T  K  L  K  M  G  T  E  I  Q  D  E  V  N  T  R  K  G  G  L  R  T  M  P  F  I  I   : L  N  E  S  F  E  R  I  A  S  Y  G  S  Q  T  N  L  I  I  Y  L  M  T  Y  Y  S  M  S  A  A  T  G  T  S  I  I  G  L  W  G  A  L  S  G  G  L  A  I  V  G  A  I  I  A  D  C  Y  W  G  R  Y  N  A  V  A  Y  G  T  I  F  T  F  I  :  G  M  V  I  L  W  L  T  S  M  I  P  Q  L  T  T  F  A  C  S  H  F  Q  H  V  C  N  G  P  T  A  F  Q  L  A  V  L  S  T  S  F  A  F  T  S  I  G  A  G  F  V  R  P  C  S  I  M  F  G  A  D  Q  L  E  Q  K  G  N  P  E  N  E  K  I  I  E  R  Y  F  N  W  Y  Y  A  S  N  G  V  A  T  M  I  A  V  T  T  I  I  Y  I  Q  D  R  Y  G  W  Q  I  G  F  G  V  P  V  L  L  M  V  L  S  I  S  T  F  L  I  G  S  P  L  Y  I  K  V  K  T  D  T  N  N  L  L  V  G  L  S  Q  A  C  V  A  A  F  R  K  R  K  T  R  L  S  L  T  G  C  D  D  Y  Y  H  S  P  Y  E  T  E  V  L  T  P  S  K  D  F  R :   C  L  N  R  A  C  M  I  E  D  R  E  R  D  L  N  P  D  G  S  A  S  N  P  W  N  L  C  S  V  E  R  V  E  S  L  K  A  L  I  R  I  I  P  M  W  S  T  G  L  M  V  F  V  D  M  N  V  F  A  F  A  V  L  Q  T  K  T  M  D  R  H  I  L  P  H  F  E  V  P  A  A  S  F  S  V  F  L  I  I  A  L  T  M  W  I  I  F  Y  D  R  L  L  V  P  L  L  S  K  Y  T  G  S  P  R  G  L  S  P  V  T  R  M  R  I  G  L  T  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  R  K  R  A  I  T  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  I  A  T  A  T  H  G  V  G  Q  I  E  F  F  Y  T  L  L  P  K  S  M  A  S  I  A  S  A  I  D  T  V  G  N  A  A  S  S  L  I  G  S  F  L  V  S  S  E  D  W  L  T  S  T  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  H  F  W  L  L  T  F  L  S  L  L  N  L  L  Y  F  H  F  I  C  R  F  Y  E  T  G  N  D  A  L  P  H  V  A  D  E  E  E  C  D  Y  R  L  L  H  E  S  *  *  Y  M  L  Y  C  I  L  D  S  *  *  S  *  I  M  K  C  F  C  M  L  T  P  L  Q  S  S  Y   : T  K  I  K  S  N </second_frame>
            <third_frame>   S  F  P  L  S  L  L  I  I  Y  Q  S  K  E  K  K  N  *  R  G  N  R  E  R  N  *  K  W  A  L  K  Y  K  M  K  *  T  Q  E  R  V  V  L  G  P  C  H  S  S  F  :  *  M  N  H  L  K  G  *  Q  V  M  V  H  K  Q  I  *  *  F  I  *  *  H  I  I  A  *  V  L  L  R  V  L  V  L  L  D  Y  G  V  H  F  Q  V  D  *  L  L  L  G  R  L  L  P  I  V  I  G  V  D  I  M  L  L  P  M  E  P  S  S  L  L  L :   E  W  L  F  F  G  S  H  Q  *  Y  R  N  S  R  L  S  P  V  H  I  F  N  M  F  V  M  D  Q  Q  H  S  N  L  L  F  C  L  H  H  L  R  L  R  L  L  E  L  V  L  L  D  L  V  L  *  C  L  V  L  I  N  W  N  K  K  G  T  L  R  M  R  R  L  L  R  D  I  S  I  G  T  M  L  A  M  G  L  Q  L  *  L  Q  L  P  Q  L  F  I  F  K  I  V  M  V  G  K  L  A  L  A  S  L  F  Y  S  W  F  C  L  S  Q  R  S  *  S  V  L  L  F  I  S  K  *  K  L  I  Q  T  T  C  *  *  D  C  P  K  H  V  *  Q  H  L  E  K  E  K  P  V  F  H  *  L  V  A  M  T  T  I  I  R  H  M  K  Q  R  S  *  R  H  Q  R  T  S   : G  V  *  I  E  L  V  *  L  K  I  V  K  E  I  *  I  L  M  D  Q  L  Q  I  H  G  I  C  V  V  W  N  E  L  N  H  S  R  L  L  L  E  *  F  L  C  G  Q  P  V  *  W  C  L  W  T  *  M  Y  S  H  L  L  Y  F  K  Q  R  Q  W  I  D  I  S  C  R  T  L  K  Y  Q  Q  H  H  S  V  C  S  *  L  S  L  *  Q  C  G  L  F  S  M  I  V  F  W  S  L  C  Y  L  N  I  L  E  V  Q  E  G  *  V  L  L  P  E  *  E  L  G  *  Q  S  L  V  C  Q  W  H  C  Q  Q  *  Q  K  A  *  D  E  K  G  Q  S  Q  K  G  M  R  T  I  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y  S  V  *  L  R  L  H  M  E  L  D  K  L  S  S  S  T  L  Y  Y  R  K  A  W  Q  A  S  R  L  L  *  T  L  L  G  M  Q  R  R  V  *  L  E  V  F  L  *  V  V  R  I  G  L  H  Q  Q  E  V  K  Q  A  G  F  L  A  T  L  I  K  V  T  W  I  T  I  S  G  C  L  L  F  *  V  C  S  T  C  Y  I  F  I  S  S  A  G  F  M  K  L  G  M  M  H  Y  L  M  W  L  M  R  K  S  V  I  I  D  S  Y  M  N  L  D  D  I  C  C  T  A  F  L  T  V  N  K  V  R  *  *  S  V  F  V  C  *  H  L  Y  N  L  H  I  :  Q  K  *  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28516" stop="28366"/>
                    <exon start="28282" stop="28065"/>
                    <exon start="27979" stop="27426"/>
                    <exon start="27343" stop="26455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPFVSFNHISKQRKKKLKRKQRTKLKMGTEIQDEVNTRKGGLRTMPFIILNESFERIASYGSQTNLIIYLMTYYSMSAATGTSIIGLWGALSGGLAIVGAIIADCYWGRYNAVAYGTIFTFIGMVILWLTSMIPQLTTFACSHFQHVCNGPTAFQLAVLSTSFAFTSIGAGFVRPCSIMFGADQLEQKGNPENEKIIERYFNWYYASNGVATMIAVTTIIYIQDRYGWQIGFGVPVLLMVLSISTFLIGSPLYIKVKTDTNNLLVGLSQACVAAFRKRKTRLSLTGCDDYYHSPYETEVLTPSKDFRCLNRACMIEDRERDLNPDGSASNPWNLCSVERVESLKALIRIIPMWSTGLMVFVDMNVFAFAVLQTKTMDRHILPHFEVPAASFSVFLIIALTMWIIFYDRLLVPLLSKYTGSPRGLSPVTRMRIGLTVSCMSMALSAITESIRRKRAITEGHEDDPNALVNMSAMWFVPQYALLGIATATHGVGQIEFFYTLLPKSMASIASAIDTVGNAASSLIGSFLVSSEDWLTSTGGKTSWLSSNINKGHLDYHFWLLTFLSLLNLLYFHFICRFYETGNDALPHVADEEECDYRLLHES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28513" e_stop="28366"/>
            <exon e_start="28282" e_stop="28065"/>
            <exon e_start="27979" e_stop="27270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.986"/>
          <exon-intron don_prob="0.508" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="28513" e_stop="28366" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28365" i_stop="28283" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28282" e_stop="28065" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.508" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28064" i_stop="27980" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.904">
            <gDNA_exon_boundary e_start="27979" e_stop="27270" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28513" stop="28366"/>
              <exon start="28282" stop="28065"/>
              <exon start="27979" stop="27740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28439" stop="28366"/>
              <exon start="28282" stop="28065"/>
              <exon start="27979" stop="27812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27791" stop="27322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27790" stop="27552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27700" stop="27270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCTTTGTCTCTTTTAATCATATATCAAAGCAAAGAAAAAAAAAACTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACTGAAATACAAGATGAAGTGAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT : TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAGCATGAGTGCTGCTACGGGTACTAGTATTATTGGATTATGGGGTGCACTTTCAGGTGGATTAGCTATTGTTGGGGCGATTATTGCCGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT : GGAATGGTTATTCTTTGGCTCACATCAATGATACCGCAACTCACGACTTTCGCCTGTTCACATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAACTTGCTGTTCTGTCTACATCATTTGCGTTTACGTCTATTGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTGAGAATGAGAAGATTATTGAGAGATATTTCAATTGGTACTATGCTAGCAATGGGGTTGCAACTATGATTGCAGTTACCACAATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGCGTCCCTGTTTTACTCATGGTTTTGTCTATCTCAACGTTCCTAATCGGTTCTCCTCTTTATATCAAAGTGAAAACTGATACAAACAACTTGCTAGTAGGATTGTCCCAAGCATGTGTAGCAGCATTTAGAAAAAGAAAAACCCGTCTTTCATTGACTGGTTGCGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAGGACTTCAGGTCAGTGTCTCCATCTTATGTCTAATTTTATTATATTGCACTTCATTAGAATAAGAGTTTATTGTATGATGAATATATGTAGGTGTTTAAATAGAGCTTGTATGATTGAAGATCGTGAAAGAGATTTGAATCCTGATGGATCAGCTTCAAATCCAT</gDNA_template>
            <first_frame> F  P  F  V  S  F  N  H  I  S  K  Q  R  K  K  K  L  K  R  K  Q  R  T  K  L  K  M  G  T  E  I  Q  D  E  V  N  T  R  K  G  G  L  R  T  M  P  F  I  I   : L  N  E  S  F  E  R  I  A  S  Y  G  S  Q  T  N  L  I  I  Y  L  M  T  Y  Y  S  M  S  A  A  T  G  T  S  I  I  G  L  W  G  A  L  S  G  G  L  A  I  V  G  A  I  I  A  D  C  Y  W  G  R  Y  N  A  V  A  Y  G  T  I  F  T  F  I  :  G  M  V  I  L  W  L  T  S  M  I  P  Q  L  T  T  F  A  C  S  H  F  Q  H  V  C  N  G  P  T  A  F  Q  L  A  V  L  S  T  S  F  A  F  T  S  I  G  A  G  F  V  R  P  C  S  I  M  F  G  A  D  Q  L  E  Q  K  G  N  P  E  N  E  K  I  I  E  R  Y  F  N  W  Y  Y  A  S  N  G  V  A  T  M  I  A  V  T  T  I  I  Y  I  Q  D  R  Y  G  W  Q  I  G  F  G  V  P  V  L  L  M  V  L  S  I  S  T  F  L  I  G  S  P  L  Y  I  K  V  K  T  D  T  N  N  L  L  V  G  L  S  Q  A  C  V  A  A  F  R  K  R  K  T  R  L  S  L  T  G  C  D  D  Y  Y  H  S  P  Y  E  T  E  V  L  T  P  S  K  D  F  R  S  V  S  P  S  Y  V  *  F  Y  Y  I  A  L  H  *  N  K  S  L  L  Y  D  E  Y  M  *  V  F  K  *  S  L  Y  D  *  R  S  *  K  R  F  E  S  *  W  I  S  F  K  S   </first_frame>
            <second_frame>  F  P  L  S  L  L  I  I  Y  Q  S  K  E  K  K  N  *  R  G  N  R  E  R  N  *  K  W  A  L  K  Y  K  M  K  *  T  Q  E  R  V  V  L  G  P  C  H  S  S  F  :  *  M  N  H  L  K  G  *  Q  V  M  V  H  K  Q  I  *  *  F  I  *  *  H  I  I  A  *  V  L  L  R  V  L  V  L  L  D  Y  G  V  H  F  Q  V  D  *  L  L  L  G  R  L  L  P  I  V  I  G  V  D  I  M  L  L  P  M  E  P  S  S  L  L  L :   E  W  L  F  F  G  S  H  Q  *  Y  R  N  S  R  L  S  P  V  H  I  F  N  M  F  V  M  D  Q  Q  H  S  N  L  L  F  C  L  H  H  L  R  L  R  L  L  E  L  V  L  L  D  L  V  L  *  C  L  V  L  I  N  W  N  K  K  G  T  L  R  M  R  R  L  L  R  D  I  S  I  G  T  M  L  A  M  G  L  Q  L  *  L  Q  L  P  Q  L  F  I  F  K  I  V  M  V  G  K  L  A  L  A  S  L  F  Y  S  W  F  C  L  S  Q  R  S  *  S  V  L  L  F  I  S  K  *  K  L  I  Q  T  T  C  *  *  D  C  P  K  H  V  *  Q  H  L  E  K  E  K  P  V  F  H  *  L  V  A  M  T  T  I  I  R  H  M  K  Q  R  S  *  R  H  Q  R  T  S  G  Q  C  L  H  L  M  S  N  F  I  I  L  H  F  I  R  I  R  V  Y  C  M  M  N  I  C  R  C  L  N  R  A  C  M  I  E  D  R  E  R  D  L  N  P  D  G  S  A  S  N  P  </second_frame>
            <third_frame>   S  L  C  L  F  *  S  Y  I  K  A  K  K  K  K  T  E  E  E  T  E  N  E  T  E  N  G  H  *  N  T  R  *  S  E  H  K  K  G  W  S  *  D  H  A  I  H  H  F :   E  *  I  I  *  K  D  S  K  L  W  F  T  N  K  S  D  N  L  F  D  D  I  L  *  H  E  C  C  Y  G  Y  *  Y  Y  W  I  M  G  C  T  F  R  W  I  S  Y  C  W  G  D  Y  C  R  L  L  L  G  S  I  *  C  C  C  L  W  N  H  L  H  F  Y   : W  N  G  Y  S  L  A  H  I  N  D  T  A  T  H  D  F  R  L  F  T  F  S  T  C  L  *  W  T  N  S  I  P  T  C  C  S  V  Y  I  I  C  V  Y  V  Y  W  S  W  F  C  *  T  L  F  Y  N  V  W  C  *  S  I  G  T  K  R  E  P  *  E  *  E  D  Y  *  E  I  F  Q  L  V  L  C  *  Q  W  G  C  N  Y  D  C  S  Y  H  N  Y  L  Y  S  R  S  L  W  L  A  N  W  L  W  R  P  C  F  T  H  G  F  V  Y  L  N  V  P  N  R  F  S  S  L  Y  Q  S  E  N  *  Y  K  Q  L  A  S  R  I  V  P  S  M  C  S  S  I  *  K  K  K  N  P  S  F  I  D  W  L  R  *  L  L  S  F  A  I  *  N  R  G  L  N  A  I  K  G  L  Q  V  S  V  S  I  L  C  L  I  L  L  Y  C  T  S  L  E  *  E  F  I  V  *  *  I  Y  V  G  V  *  I  E  L  V  *  L  K  I  V  K  E  I  *  I  L  M  D  Q  L  Q  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28513" stop="28366"/>
                    <exon start="28282" stop="28065"/>
                    <exon start="27979" stop="27401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFVSFNHISKQRKKKLKRKQRTKLKMGTEIQDEVNTRKGGLRTMPFIILNESFERIASYGSQTNLIIYLMTYYSMSAATGTSIIGLWGALSGGLAIVGAIIADCYWGRYNAVAYGTIFTFIGMVILWLTSMIPQLTTFACSHFQHVCNGPTAFQLAVLSTSFAFTSIGAGFVRPCSIMFGADQLEQKGNPENEKIIERYFNWYYASNGVATMIAVTTIIYIQDRYGWQIGFGVPVLLMVLSISTFLIGSPLYIKVKTDTNNLLVGLSQACVAAFRKRKTRLSLTGCDDYYHSPYETEVLTPSKDFRSVSPSYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="30244" PGL_stop="32448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30244" e_stop="30420"/>
            <exon e_start="30516" e_stop="30733"/>
            <exon e_start="30815" e_stop="31368"/>
            <exon e_start="31454" e_stop="32448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.735" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="30244" e_stop="30420" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="30421" i_stop="30515" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30516" e_stop="30733" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.735" acc_prob="0.967">
            <gDNA_intron_boundary i_start="30734" i_stop="30814" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30815" e_stop="31368" e_length="554"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.958">
            <gDNA_intron_boundary i_start="31369" i_stop="31453" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31454" e_stop="32448" e_length="995"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30244" stop="30420"/>
              <exon start="30516" stop="30733"/>
              <exon start="30815" stop="31368"/>
              <exon start="31454" stop="32400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30347" stop="30420"/>
              <exon start="30516" stop="30733"/>
              <exon start="30815" stop="30982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31004" stop="31242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31280" stop="31368"/>
              <exon start="31454" stop="32286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31608" stop="32411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31716" stop="32255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32051" stop="32417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32051" stop="32413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32053" stop="32423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32075" stop="32448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32107" stop="32448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGGTCCTGGGGTTTAGTGTTTTTTTCTCTCTCTCTTTTTGTGTCTGCTAATCATATATTAAAGCAAAGAAGAGAAGTGAAGAGGAAACAGAAAATAGCAGTGGAAATGGGCACAGAATCACAAGCTGAAATAAACACAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTT : TGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT : GGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCTATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAG : GTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACGAGTTGAATCACTCAAGGCTCTTATTAGAATAATTCCTATGTGGTCAGCCGGTTTTATGATGTTTGTAGACATGAATGTATTCGCATTTTCTGTACTTCAAACAAAGACAATGGATAGACATATCTTGCCACACTTTGAAGTACCAGCAGCATCATTCAGCGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTCTGCCGGTTTTATGAGACTGGGAATGATGAATTACCTCATGTGGCTGATGAGGAAGAGTGTGATTATAGACTCTTACATGAATCTTGATGATATGTTGTACTGCATTCTTGACAGTTAATTAAGTTAGATAATAAAGTGTTCTTATATGTTAAGACCTTTACAATCTTCATATAGTTTCATACATTCTGGATGA</gDNA_template>
            <first_frame> H  G  P  G  V  *  C  F  F  L  S  L  F  L  C  L  L  I  I  Y  *  S  K  E  E  K  *  R  G  N  R  K  *  Q  W  K  W  A  Q  N  H  K  L  K  *  T  Q  E  R  V  V  L  G  P  C  H  S  S  F  :  *  M  N  H  L  K  G  *  Q  V  M  V  H  K  Q  T  *  *  F  I  *  *  H  I  I  T  *  V  L  L  L  A  L  V  L  L  V  Y  G  V  H  F  Q  V  D  W  L  L  L  G  R  L  L  L  I  V  I  G  V  D  I  M  L  L  P  M  E  P  S  S  L  L  L :   E  W  L  F  S  G  L  H  Q  *  F  R  N  S  Q  L  W  H  V  L  I  F  N  M  F  V  M  D  Q  Q  H  S  S  L  L  F  C  L  H  L  L  C  L  R  L  S  E  L  V  L  L  D  L  V  L  *  C  L  V  L  I  N  W  N  K  K  A  T  L  K  T  R  R  L  L  R  A  I  S  I  G  T  M  L  A  Q  G  L  Q  L  *  L  Q  L  P  L  L  F  I  F  K  I  V  M  V  G  K  L  A  L  V  S  L  L  Y  S  W  F  C  L  S  Q  R  S  *  S  V  L  L  F  I  S  K  *  N  P  I  Q  T  T  C  Y  *  D  C  S  K  Q  V  Q  L  L  L  E  K  G  K  P  L  F  H  *  L  V  V  M  T  T  I  I  R  H  M  K  Q  R  S  *  R  H  Q  K  T  S   : G  A  *  I  E  L  V  *  L  K  I  L  K  E  I  *  M  L  M  D  Q  L  Q  I  H  G  I  C  V  V  W  N  E  L  N  H  S  R  L  L  L  E  *  F  L  C  G  Q  P  V  L  *  C  L  *  T  *  M  Y  S  H  F  L  Y  F  K  Q  R  Q  W  I  D  I  S  C  H  T  L  K  Y  Q  Q  H  H  S  A  C  S  *  L  L  L  *  Q  S  G  L  L  S  M  I  V  F  W  S  L  C  Y  Q  N  I  L  E  G  Q  E  G  *  V  L  L  P  E  W  E  L  G  *  Q  S  L  V  C  L  W  H  C  Q  Q  *  Q  K  A  *  D  E  K  G  Q  S  Q  K  G  M  R  T  T  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y  S  G  *  L  R  L  P  M  E  L  D  R  L  N  S  S  T  L  Y  Y  R  K  A  W  P  A  S  R  Q  L  C  T  L  L  E  L  L  C  R  V  *  L  E  V  F  W  *  V  V  R  I  G  L  H  Q  G  E  V  K  R  A  G  F  L  A  T  L  I  R  V  T  W  I  T  I  S  G  C  L  L  *  *  V  F  S  T  C  Y  I  F  Y  G  S  A  G  F  M  R  L  G  M  M  N  Y  L  M  W  L  M  R  K  S  V  I  I  D  S  Y  M  N  L  D  D  M  L  Y  C  I  L  D  S  *  L  S  *  I  I  K  C  S  Y  M  L  R  P  L  Q  S  S  Y  S  F  I  H  S  G  * </first_frame>
            <second_frame>  M  V  L  G  F  S  V  F  F  S  L  S  F  C  V  C  *  S  Y  I  K  A  K  K  R  S  E  E  E  T  E  N  S  S  G  N  G  H  R  I  T  S  *  N  K  H  K  K  G  W  S  *  D  H  A  I  H  H  F :   E  *  I  I  *  K  D  S  K  L  W  F  T  N  K  H  D  N  L  F  D  D  I  L  *  H  E  C  C  Y  W  H  *  Y  Y  W  Y  M  G  C  T  F  K  W  I  G  Y  C  W  G  D  Y  C  *  L  L  L  G  S  I  *  C  C  C  L  W  N  H  L  H  F  Y   : W  N  G  Y  S  L  A  Y  I  N  D  S  A  T  H  N  F  G  M  F  S  F  S  T  C  L  *  W  T  N  S  I  P  A  C  C  S  V  Y  I  F  C  V  Y  V  Y  R  S  W  F  C  *  T  L  F  Y  N  V  W  C  *  S  I  G  T  K  R  Q  P  *  K  Q  E  D  C  *  E  L  F  Q  L  V  L  C  *  H  R  G  C  N  Y  D  C  S  Y  R  Y  Y  L  Y  S  R  S  L  W  L  A  N  W  L  W  Y  P  C  Y  T  H  G  F  V  C  L  N  V  P  N  R  F  F  S  L  Y  Q  S  E  T  R  Y  K  Q  L  A  I  R  I  V  P  S  R  C  S  C  F  *  K  K  E  N  P  S  F  I  D  W  L  *  *  L  L  S  F  A  I  *  N  R  G  L  N  A  I  K  R  L  Q  :  V  L  K  *  S  L  Y  D  *  R  S  *  K  R  F  E  C  *  W  I  S  F  K  S  M  E  S  V  *  C  G  T  S  *  I  T  Q  G  S  Y  *  N  N  S  Y  V  V  S  R  F  Y  D  V  C  R  H  E  C  I  R  I  F  C  T  S  N  K  D  N  G  *  T  Y  L  A  T  L  *  S  T  S  S  I  I  Q  R  V  L  D  Y  C  F  N  N  L  D  Y  F  L  *  S  C  F  G  P  F  A  I  K  I  Y  W  K  A  K  R  A  K  S  C  Y  P  N  G  N  W  V  N  S  L  L  Y  V  Y  G  I  V  S  N  N  R  K  H  K  T  K  K  G  N  H  R  R  A  *  G  R  P  K  C  F  S  K  H  V  C  Y  V  V  R  A  T  V  C  T  T  R  D  S  *  G  Y  P  W  S  W  T  D  *  I  L  L  H  S  I  T  E  K  H  G  Q  H  R  V  S  Y  V  H  C  W  N  C  C  V  E  F  D  W  K  Y  S  G  E  *  *  G  L  A  Y  I  K  G  R  *  N  E  L  A  F  *  Q  H  *  *  G  S  P  G  L  P  F  L  V  A  C  F  N  E  F  S  Q  L  V  I  F  S  M  G  L  P  V  L  *  D  W  E  *  *  I  T  S  C  G  *  *  G  R  V  *  L  *  T  L  T  *  I  L  M  I  C  C  T  A  F  L  T  V  N  *  V  R  *  *  S  V  L  I  C  *  D  L  Y  N  L  H  I  V  S  Y  I  L  D   </second_frame>
            <third_frame>   W  S  W  G  L  V  F  F  S  L  S  L  F  V  S  A  N  H  I  L  K  Q  R  R  E  V  K  R  K  Q  K  I  A  V  E  M  G  T  E  S  Q  A  E  I  N  T  R  K  G  G  L  R  T  M  P  F  I  I   : L  N  E  S  F  E  R  I  A  S  Y  G  S  Q  T  N  M  I  I  Y  L  M  T  Y  Y  N  M  S  A  A  T  G  T  S  I  I  G  I  W  G  A  L  S  S  G  L  A  I  V  G  A  I  I  A  D  C  Y  W  G  R  Y  N  A  V  A  Y  G  T  I  F  T  F  I  :  G  M  V  I  L  W  L  T  S  M  I  P  Q  L  T  T  L  A  C  S  H  F  Q  H  V  C  N  G  P  T  A  F  Q  L  A  V  L  F  T  S  F  V  F  T  S  I  G  A  G  F  V  R  P  C  S  I  M  F  G  A  D  Q  L  E  Q  K  G  N  P  E  N  K  K  I  V  E  S  Y  F  N  W  Y  Y  A  S  T  G  V  A  T  M  I  A  V  T  V  I  I  Y  I  Q  D  R  Y  G  W  Q  I  G  F  G  I  P  V  I  L  M  V  L  S  V  S  T  F  L  I  G  S  S  L  Y  I  K  V  K  P  D  T  N  N  L  L  L  G  L  F  Q  A  G  A  A  A  F  R  K  R  K  T  P  L  S  L  T  G  C  D  D  Y  Y  H  S  P  Y  E  T  E  V  L  T  P  S  K  D  F  R :   C  L  N  R  A  C  M  I  E  D  P  E  R  D  L  N  A  D  G  S  A  S  N  P  W  N  L  C  S  V  E  R  V  E  S  L  K  A  L  I  R  I  I  P  M  W  S  A  G  F  M  M  F  V  D  M  N  V  F  A  F  S  V  L  Q  T  K  T  M  D  R  H  I  L  P  H  F  E  V  P  A  A  S  F  S  V  F  L  I  I  A  L  T  I  W  I  T  F  Y  D  R  V  L  V  P  L  L  S  K  Y  T  G  R  P  R  G  L  S  P  V  T  R  M  G  I  G  L  T  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  R  K  R  A  I  T  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  I  A  E  A  T  H  G  V  G  Q  I  E  F  F  Y  T  L  L  P  K  S  M  A  S  I  A  S  A  M  Y  T  V  G  T  A  V  S  S  L  I  G  S  I  L  V  S  S  E  D  W  L  T  S  R  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  H  F  W  L  L  A  L  M  S  F  L  N  L  L  Y  F  L  W  V  C  R  F  Y  E  T  G  N  D  E  L  P  H  V  A  D  E  E  E  C  D  Y  R  L  L  H  E  S  *  *  Y  V  V  L  H  S  *  Q  L  I  K  L  D  N  K  V  F  L  Y  V  K  T  F  T  I  F  I  *  F  H  T  F  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30246" stop="30420"/>
                    <exon start="30516" stop="30733"/>
                    <exon start="30815" stop="31368"/>
                    <exon start="31454" stop="32342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1833</number_coding_nucleotides>
                  <number_encoded_amino_acids>611</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSWGLVFFSLSLFVSANHILKQRREVKRKQKIAVEMGTESQAEINTRKGGLRTMPFIILNESFERIASYGSQTNMIIYLMTYYNMSAATGTSIIGIWGALSSGLAIVGAIIADCYWGRYNAVAYGTIFTFIGMVILWLTSMIPQLTTLACSHFQHVCNGPTAFQLAVLFTSFVFTSIGAGFVRPCSIMFGADQLEQKGNPENKKIVESYFNWYYASTGVATMIAVTVIIYIQDRYGWQIGFGIPVILMVLSVSTFLIGSSLYIKVKPDTNNLLLGLFQAGAAAFRKRKTPLSLTGCDDYYHSPYETEVLTPSKDFRCLNRACMIEDPERDLNADGSASNPWNLCSVERVESLKALIRIIPMWSAGFMMFVDMNVFAFSVLQTKTMDRHILPHFEVPAASFSVFLIIALTIWITFYDRVLVPLLSKYTGRPRGLSPVTRMGIGLTVSCMSMALSAITESIRRKRAITEGHEDDPNALVNMSAMWFVPQYALLGIAEATHGVGQIEFFYTLLPKSMASIASAMYTVGTAVSSLIGSILVSSEDWLTSRGGKTSWLSSNINKGHLDYHFWLLALMSFLNLLYFLWVCRFYETGNDELPHVADEEECDYRLLHES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31003" e_stop="31527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31003" e_stop="31527" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31003" stop="31475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31004" stop="31242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31094" stop="31527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACAAAAAGGCAACCCTGAAAACAAGAAGATTGTTGAGAGCTATTTCAATTGGTACTATGCTAGCACAGGGGTTGCAACTATGATTGCAGTTACCGTTATTATTTATATTCAAGATCGTTATGGTTGGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTCTCTTTATATCAAAGTGAAACCCGATACAAACAACTTGCTATTAGGATTGTTCCAAGCAGGTGCAGCTGCTTTTAGAAAAAGGAAAACCCCTCTTTCATTGACTGGTTGTGATGACTACTATCATTCGCCATATGAAACAGAGGTCTTAACGCCATCAAAAGACTTCAGGTCAGTGTCTCCGTCTTTTGTCTGAGTTTATTATATTACAAGTTCATTGGAATAAGACATTATTGTATGATGAACATATATATAGGTGCTTAAATAGAGCTTGTATGATTGAAGATCCTGAAAGAGATTTGAATGCTGATGGATCAGCTTCAAATCCAT</gDNA_template>
            <first_frame> G  T  K  R  Q  P  *  K  Q  E  D  C  *  E  L  F  Q  L  V  L  C  *  H  R  G  C  N  Y  D  C  S  Y  R  Y  Y  L  Y  S  R  S  L  W  L  A  N  W  L  W  Y  P  C  Y  T  H  G  F  V  C  L  N  V  P  N  R  F  F  S  L  Y  Q  S  E  T  R  Y  K  Q  L  A  I  R  I  V  P  S  R  C  S  C  F  *  K  K  E  N  P  S  F  I  D  W  L  *  *  L  L  S  F  A  I  *  N  R  G  L  N  A  I  K  R  L  Q  V  S  V  S  V  F  C  L  S  L  L  Y  Y  K  F  I  G  I  R  H  Y  C  M  M  N  I  Y  I  G  A  *  I  E  L  V  *  L  K  I  L  K  E  I  *  M  L  M  D  Q  L  Q  I  H </first_frame>
            <second_frame>  E  Q  K  G  N  P  E  N  K  K  I  V  E  S  Y  F  N  W  Y  Y  A  S  T  G  V  A  T  M  I  A  V  T  V  I  I  Y  I  Q  D  R  Y  G  W  Q  I  G  F  G  I  P  V  I  L  M  V  L  S  V  S  T  F  L  I  G  S  S  L  Y  I  K  V  K  P  D  T  N  N  L  L  L  G  L  F  Q  A  G  A  A  A  F  R  K  R  K  T  P  L  S  L  T  G  C  D  D  Y  Y  H  S  P  Y  E  T  E  V  L  T  P  S  K  D  F  R  S  V  S  P  S  F  V  *  V  Y  Y  I  T  S  S  L  E  *  D  I  I  V  *  *  T  Y  I  *  V  L  K  *  S  L  Y  D  *  R  S  *  K  R  F  E  C  *  W  I  S  F  K  S   </second_frame>
            <third_frame>   N  K  K  A  T  L  K  T  R  R  L  L  R  A  I  S  I  G  T  M  L  A  Q  G  L  Q  L  *  L  Q  L  P  L  L  F  I  F  K  I  V  M  V  G  K  L  A  L  V  S  L  L  Y  S  W  F  C  L  S  Q  R  S  *  S  V  L  L  F  I  S  K  *  N  P  I  Q  T  T  C  Y  *  D  C  S  K  Q  V  Q  L  L  L  E  K  G  K  P  L  F  H  *  L  V  V  M  T  T  I  I  R  H  M  K  Q  R  S  *  R  H  Q  K  T  S  G  Q  C  L  R  L  L  S  E  F  I  I  L  Q  V  H  W  N  K  T  L  L  Y  D  E  H  I  Y  R  C  L  N  R  A  C  M  I  E  D  P  E  R  D  L  N  A  D  G  S  A  S  N  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31004" stop="31393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKGNPENKKIVESYFNWYYASTGVATMIAVTVIIYIQDRYGWQIGFGIPVILMVLSVSTFLIGSSLYIKVKPDTNNLLLGLFQAGAAAFRKRKTPLSLTGCDDYYHSPYETEVLTPSKDFRSVSPSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30382" e_stop="30733"/>
            <exon e_start="30815" e_stop="30952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.735" acc_prob="0.967" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30382" e_stop="30733" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.735" acc_prob="0.967">
            <gDNA_intron_boundary i_start="30734" i_stop="30814" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30815" e_stop="30952" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30382" stop="30733"/>
              <exon start="30815" stop="30952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAAAGGGTGGTCTTAGGACCATGCCATTCATCATTTGTACTACTCTCACTCTACTCTTTTACTTCAAATTGTTTTGCAATGTGTTAATTCTAATATCAATTTTTTGTTATTGTTGTTGCTATTGTTTTCAGTGAATGAATCATTTGAAAGGATAGCAAGTTATGGTTCACAAACAAACATGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACTGGCACTAGTATTATTGGTATATGGGGTGCACTTTCAAGTGGATTGGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATATAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT : GGAATGGTTATTCTCTGGCTTACATCAATGATTCCGCAACTCACAACTTTGGCATGTTCTCATTTTCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTACATCTTTTGTGTTTACGTCTATC</gDNA_template>
            <first_frame> Q  E  R  V  V  L  G  P  C  H  S  S  F  V  L  L  S  L  Y  S  F  T  S  N  C  F  A  M  C  *  F  *  Y  Q  F  F  V  I  V  V  A  I  V  F  S  E  *  I  I  *  K  D  S  K  L  W  F  T  N  K  H  D  N  L  F  D  D  I  L  *  H  E  C  C  Y  W  H  *  Y  Y  W  Y  M  G  C  T  F  K  W  I  G  Y  C  W  G  D  Y  C  *  L  L  L  G  S  I  *  C  C  C  L  W  N  H  L  H  F  Y   : W  N  G  Y  S  L  A  Y  I  N  D  S  A  T  H  N  F  G  M  F  S  F  S  T  C  L  *  W  T  N  S  I  P  A  C  C  S  V  Y  I  F  C  V  Y  V  Y  </first_frame>
            <second_frame>  K  K  G  W  S  *  D  H  A  I  H  H  L  Y  Y  S  H  S  T  L  L  L  Q  I  V  L  Q  C  V  N  S  N  I  N  F  L  L  L  L  L  L  L  F  S  V  N  E  S  F  E  R  I  A  S  Y  G  S  Q  T  N  M  I  I  Y  L  M  T  Y  Y  N  M  S  A  A  T  G  T  S  I  I  G  I  W  G  A  L  S  S  G  L  A  I  V  G  A  I  I  A  D  C  Y  W  G  R  Y  N  A  V  A  Y  G  T  I  F  T  F  I  :  G  M  V  I  L  W  L  T  S  M  I  P  Q  L  T  T  L  A  C  S  H  F  Q  H  V  C  N  G  P  T  A  F  Q  L  A  V  L  F  T  S  F  V  F  T  S  I </second_frame>
            <third_frame>   R  K  G  G  L  R  T  M  P  F  I  I  C  T  T  L  T  L  L  F  Y  F  K  L  F  C  N  V  L  I  L  I  S  I  F  C  Y  C  C  C  Y  C  F  Q  *  M  N  H  L  K  G  *  Q  V  M  V  H  K  Q  T  *  *  F  I  *  *  H  I  I  T  *  V  L  L  L  A  L  V  L  L  V  Y  G  V  H  F  Q  V  D  W  L  L  L  G  R  L  L  L  I  V  I  G  V  D  I  M  L  L  P  M  E  P  S  S  L  L  L :   E  W  L  F  S  G  L  H  Q  *  F  R  N  S  Q  L  W  H  V  L  I  F  N  M  F  V  M  D  Q  Q  H  S  S  L  L  F  C  L  H  L  L  C  L  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30401" stop="30733"/>
                    <exon start="30815" stop="30952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DHAIHHLYYSHSTLLLQIVLQCVNSNINFLLLLLLLFSVNESFERIASYGSQTNMIIYLMTYYNMSAATGTSIIGIWGALSSGLAIVGAIIADCYWGRYNAVAYGTIFTFIGMVILWLTSMIPQLTTLACSHFQHVCNGPTAFQLAVLFTSFVFTSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="33048" PGL_stop="32041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33048" e_stop="33032"/>
            <exon e_start="32428" e_stop="32041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.824"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.824">
            <gDNA_exon_boundary e_start="33048" e_stop="33032" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33031" i_stop="32429" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="32428" e_stop="32041" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33048" stop="33032"/>
              <exon start="32428" stop="32041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230581" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTTTTTTTTTTTA : TATATGAAGATTGTAAAGGTCTTAACATATAAGAACACTTTATTATCTAACTTAATTAACTGTCAAGAATGCAGTACAACATATCATCAAGATTCATGTAAGAGTCTATAATCACACTCTTCCTCATCAGCCACATGAGGTAATTCATCATTCCCAGTCTCATAAAACCGGCAGACCCATAGAAAATATAACAAGTTGAGAAAACTCATTAAAGCAAGCAACCAGAAATGGTAATCCAGGTGACCCTTATTAATGTTGCTAGAAAGCCAGCTCGTTTTACCTCCCCTTGATGTAAGCCAATCCTCACTACTCACCAGAATACTTCCAATCAAACTCGACACAGCAGTTCCAACAGTGTACATAGCTGACGCGATGCTGGCCATGCTTT</gDNA_template>
            <first_frame> S  S  F  F  F  Y :   I  *  R  L  *  R  S  *  H  I  R  T  L  Y  Y  L  T  *  L  T  V  K  N  A  V  Q  H  I  I  K  I  H  V  R  V  Y  N  H  T  L  P  H  Q  P  H  E  V  I  H  H  S  Q  S  H  K  T  G  R  P  I  E  N  I  T  S  *  E  N  S  L  K  Q  A  T  R  N  G  N  P  G  D  P  Y  *  C  C  *  K  A  S  S  F  Y  L  P  L  M  *  A  N  P  H  Y  S  P  E  Y  F  Q  S  N  S  T  Q  Q  F  Q  Q  C  T  *  L  T  R  C  W  P  C  F </first_frame>
            <second_frame>  L  L  F  F  F   : I  Y  E  D  C  K  G  L  N  I  *  E  H  F  I  I  *  L  N  *  L  S  R  M  Q  Y  N  I  S  S  R  F  M  *  E  S  I  I  T  L  F  L  I  S  H  M  R  *  F  I  I  P  S  L  I  K  P  A  D  P  *  K  I  *  Q  V  E  K  T  H  *  S  K  Q  P  E  M  V  I  Q  V  T  L  I  N  V  A  R  K  P  A  R  F  T  S  P  *  C  K  P  I  L  T  T  H  Q  N  T  S  N  Q  T  R  H  S  S  S  N  S  V  H  S  *  R  D  A  G  H  A   </second_frame>
            <third_frame>   F  F  F  F  L  :  Y  M  K  I  V  K  V  L  T  Y  K  N  T  L  L  S  N  L  I  N  C  Q  E  C  S  T  T  Y  H  Q  D  S  C  K  S  L  *  S  H  S  S  S  S  A  T  *  G  N  S  S  F  P  V  S  *  N  R  Q  T  H  R  K  Y  N  K  L  R  K  L  I  K  A  S  N  Q  K  W  *  S  R  *  P  L  L  M  L  L  E  S  Q  L  V  L  P  P  L  D  V  S  Q  S  S  L  L  T  R  I  L  P  I  K  L  D  T  A  V  P  T  V  Y  I  A  D  A  M  L  A  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042B19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="33872" PGL_stop="34619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33872" e_stop="33985"/>
            <exon e_start="34077" e_stop="34294"/>
            <exon e_start="34380" e_stop="34619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.978" e_score="0.895"/>
          <exon-intron don_prob="0.828" acc_prob="0.961" e_score="0.954"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="33872" e_stop="33985" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33986" i_stop="34076" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="34077" e_stop="34294" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="0.961">
            <gDNA_intron_boundary i_start="34295" i_stop="34379" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="34380" e_stop="34619" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33872" stop="33985"/>
              <exon start="34077" stop="34294"/>
              <exon start="34380" stop="34619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCAAGAAGAGAAGTGAAGAGGAAACAGAGAACGAAACTGAAAATGGGCACAGAATCACAAGTTGAAGTGAACACAAGAAAGGGTGGTCTTAGAACCATGCCATTCATCATTA : TGAATGAAGCATTTGAAATGATAGCAAGTTATGGTTCACAAACAAATCTGATAATTTATTTGATGACATATTATAACATGAGTGCTGCTACGGGTACTAGTATTATTGGTATATGGGGCGCATTTTCAAGTGGATTAGCTATTGTTGGGGCGATTATTGCTGATTGTTATTGGGGTCGATTTAATGCTGTTGCCTATGGAACCATCTTCACTTTTATT : GGAATGGTTATTCTTTGGCTAACATCAATGATTCCGCAACTCACGACTTTGGCCTGTTCTCAGTTGCAACATGTTTGTAATGGACCAACAGCATTCCAGCTTGCTGTTCTGTTTTCATCTTTTGTGTTTACGTCTATCGGAGCTGGTTTTGTTAGACCTTGTTCCATAATGTTTGGTGCTGATCAATTGGAACAAAAAGGGAACCCTAAGAATGAGAAGATTATTGAAAGCTATTTCAAT</gDNA_template>
            <first_frame> R  Q  E  E  K  *  R  G  N  R  E  R  N  *  K  W  A  Q  N  H  K  L  K  *  T  Q  E  R  V  V  L  E  P  C  H  S  S  L  :  *  M  K  H  L  K  *  *  Q  V  M  V  H  K  Q  I  *  *  F  I  *  *  H  I  I  T  *  V  L  L  R  V  L  V  L  L  V  Y  G  A  H  F  Q  V  D  *  L  L  L  G  R  L  L  L  I  V  I  G  V  D  L  M  L  L  P  M  E  P  S  S  L  L  L :   E  W  L  F  F  G  *  H  Q  *  F  R  N  S  R  L  W  P  V  L  S  C  N  M  F  V  M  D  Q  Q  H  S  S  L  L  F  C  F  H  L  L  C  L  R  L  S  E  L  V  L  L  D  L  V  P  *  C  L  V  L  I  N  W  N  K  K  G  T  L  R  M  R  R  L  L  K  A  I  S   </first_frame>
            <second_frame>  G  K  K  R  S  E  E  E  T  E  N  E  T  E  N  G  H  R  I  T  S  *  S  E  H  K  K  G  W  S  *  N  H  A  I  H  H  Y :   E  *  S  I  *  N  D  S  K  L  W  F  T  N  K  S  D  N  L  F  D  D  I  L  *  H  E  C  C  Y  G  Y  *  Y  Y  W  Y  M  G  R  I  F  K  W  I  S  Y  C  W  G  D  Y  C  *  L  L  L  G  S  I  *  C  C  C  L  W  N  H  L  H  F  Y   : W  N  G  Y  S  L  A  N  I  N  D  S  A  T  H  D  F  G  L  F  S  V  A  T  C  L  *  W  T  N  S  I  P  A  C  C  S  V  F  I  F  C  V  Y  V  Y  R  S  W  F  C  *  T  L  F  H  N  V  W  C  *  S  I  G  T  K  R  E  P  *  E  *  E  D  Y  *  K  L  F  Q  </second_frame>
            <third_frame>   A  R  R  E  V  K  R  K  Q  R  T  K  L  K  M  G  T  E  S  Q  V  E  V  N  T  R  K  G  G  L  R  T  M  P  F  I  I   : M  N  E  A  F  E  M  I  A  S  Y  G  S  Q  T  N  L  I  I  Y  L  M  T  Y  Y  N  M  S  A  A  T  G  T  S  I  I  G  I  W  G  A  F  S  S  G  L  A  I  V  G  A  I  I  A  D  C  Y  W  G  R  F  N  A  V  A  Y  G  T  I  F  T  F  I  :  G  M  V  I  L  W  L  T  S  M  I  P  Q  L  T  T  L  A  C  S  Q  L  Q  H  V  C  N  G  P  T  A  F  Q  L  A  V  L  F  S  S  F  V  F  T  S  I  G  A  G  F  V  R  P  C  S  I  M  F  G  A  D  Q  L  E  Q  K  G  N  P  K  N  E  K  I  I  E  S  Y  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33874" stop="33985"/>
                    <exon start="34077" stop="34294"/>
                    <exon start="34380" stop="34619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARREVKRKQRTKLKMGTESQVEVNTRKGGLRTMPFIIMNEAFEMIASYGSQTNLIIYLMTYYNMSAATGTSIIGIWGAFSSGLAIVGAIIADCYWGRFNAVAYGTIFTFIGMVILWLTSMIPQLTTLACSQLQHVCNGPTAFQLAVLFSSFVFTSIGAGFVRPCSIMFGADQLEQKGNPKNEKIIESYFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="35242" PGL_stop="35992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35242" e_stop="35992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="35242" e_stop="35992" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35242" stop="35876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35242" stop="35838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35242" stop="35810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35313" stop="35992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35379" stop="35992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332247" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACTTTGAAGTACCAGCAGCATCATTCAGTGTGTTCTTGATTATTGCTTTAACAATCTGGATTACTTTCTACGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATAGCGGAAGGGCATGAAGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGAATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAGTTTTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCAGCTATGTACACCGTTGGGACTGCTGTGTCGAGTTTGACTGGAAGTATTCTGGTGAGTAGTGAAGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCGAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGGTGCTTGCTTCTATGAGTTTTCTCAACCTGCTATATTTTCTAGTTGTCTGCCGGTTTTATGATACTGGGAAGGATGAGATGAGTAGATCACCTCATGTGGCTGATGAGAAAGAATGCGATTATAGACTCTTACATGAATCTTGATGATATATTGTATTGCATCCTTGAATGATCCAACAACTACTAATTGAGTTGGACAATAAAGTTTTTCATATGTTAAGA</gDNA_template>
            <first_frame> A  L  *  S  T  S  S  I  I  Q  C  V  L  D  Y  C  F  N  N  L  D  Y  F  L  R  S  C  F  G  P  F  A  I  K  I  Y  W  K  A  K  R  A  K  S  C  Y  P  N  G  N  W  V  N  S  L  L  Y  V  Y  G  I  V  S  N  N  R  K  H  K  T  K  K  G  N  S  G  R  A  *  R  R  S  K  C  F  S  K  H  V  C  Y  V  V  R  A  T  V  C  T  T  R  N  S  *  G  Y  P  W  S  W  T  D  *  V  F  L  H  S  I  T  E  K  H  G  K  H  R  V  S  Y  V  H  R  W  D  C  C  V  E  F  D  W  K  Y  S  G  E  *  *  R  L  A  Y  I  K  G  R  *  N  E  L  A  F  E  Q  H  *  *  G  S  P  G  L  P  F  L  G  A  C  F  Y  E  F  S  Q  P  A  I  F  S  S  C  L  P  V  L  *  Y  W  E  G  *  D  E  *  I  T  S  C  G  *  *  E  R  M  R  L  *  T  L  T  *  I  L  M  I  Y  C  I  A  S  L  N  D  P  T  T  T  N  *  V  G  Q  *  S  F  S  Y  V  K  </first_frame>
            <second_frame>  H  F  E  V  P  A  A  S  F  S  V  F  L  I  I  A  L  T  I  W  I  T  F  Y  D  R  V  L  V  P  L  L  S  K  Y  T  G  R  P  R  G  L  S  P  V  T  R  M  G  I  G  L  T  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  R  K  R  A  I  A  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  I  A  E  A  T  H  G  V  G  Q  I  E  F  F  Y  T  L  L  P  K  S  M  A  S  I  A  S  A  M  Y  T  V  G  T  A  V  S  S  L  T  G  S  I  L  V  S  S  E  D  W  L  T  S  R  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  H  F  W  V  L  A  S  M  S  F  L  N  L  L  Y  F  L  V  V  C  R  F  Y  D  T  G  K  D  E  M  S  R  S  P  H  V  A  D  E  K  E  C  D  Y  R  L  L  H  E  S  *  *  Y  I  V  L  H  P  *  M  I  Q  Q  L  L  I  E  L  D  N  K  V  F  H  M  L  R </second_frame>
            <third_frame>   T  L  K  Y  Q  Q  H  H  S  V  C  S  *  L  L  L  *  Q  S  G  L  L  S  T  I  V  F  W  S  L  C  Y  Q  N  I  L  E  G  Q  E  G  *  V  L  L  P  E  W  E  L  G  *  Q  S  L  V  C  L  W  H  C  Q  Q  *  Q  K  A  *  D  E  K  G  Q  *  R  K  G  M  K  T  I  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y  S  E  *  L  R  L  P  M  E  L  D  R  L  S  F  S  T  L  Y  Y  R  K  A  W  Q  A  S  R  Q  L  C  T  P  L  G  L  L  C  R  V  *  L  E  V  F  W  *  V  V  K  I  G  L  H  Q  G  E  V  K  R  A  G  F  R  A  T  L  I  R  V  T  W  I  T  I  S  G  C  L  L  L  *  V  F  S  T  C  Y  I  F  *  L  S  A  G  F  M  I  L  G  R  M  R  *  V  D  H  L  M  W  L  M  R  K  N  A  I  I  D  S  Y  M  N  L  D  D  I  L  Y  C  I  L  E  *  S  N  N  Y  *  L  S  W  T  I  K  F  F  I  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35243" stop="35914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFEVPAASFSVFLIIALTIWITFYDRVLVPLLSKYTGRPRGLSPVTRMGIGLTVSCMSMALSAITESIRRKRAIAEGHEDDPNALVNMSAMWFVPQYALLGIAEATHGVGQIEFFYTLLPKSMASIASAMYTVGTAVSSLTGSILVSSEDWLTSRGGKTSWLSSNINKGHLDYHFWVLASMSFLNLLYFLVVCRFYDTGKDEMSRSPHVADEKECDYRLLHES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="37444" PGL_stop="38285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37444" e_stop="38285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="37444" e_stop="38285" e_length="842"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37444" stop="38285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTCTAGAGAAAATCAAAGAACTAAAGCATACAATGAGTACTACTTTAAAGGTATTGATGTTCCCATTTTTGGCTTATGGACACATATCTCCATATCTAAACGTAGCTAAGAAGCTTGCGGACAGAGGATTCTTGATTTACTTGTGTTCAACACCGATAAATCTCAAATCCACCATCAACAAAATCCCCGAAAAGTATGCTGATTCGATTCAGCTTATCGAACTTCACTTACCAGAATTACCCGAACTTCCTCCTCATTACCATACCACCAATGGTCTCCCACCCAATCTCAATCACATCCTTCGTAGAGCCCTGAAAATGTCGAAACCAAACTTCTCGAAAATCATGCAAAATCTGAAACCTGATTTGTTGATTTACGACATATTGCAGCAATGGGCTGAAGATGTGGCTACTGAACTAAACATTCCAGCAGTTAAGCTTTTGACTTCGGGTGTTGCTGTGTTTTCGTATTTTTTCAACTTAACGAAGAAACCAGAGGTTGAATTCCCTTACCCTGCTATTTATCTCAGGAAAATTGAGCTAGTTAGATGGTGTGAAACGTTGTCAAAACATAACAAAGAGGGAGAAGAACATGATGATGGTTTAGCTTATGGAAATATGCAAATCATGTTGATGAGTACTTCTAAAATTTTAGAAGCCAAATATATTGATTATTGCATTGAACTGACAAATTGGAAAGTTGTTCCAGTTGGTTCACTAGTTCAAGATTCAATCACTAATGACGCGGCGGACGATGACATGGAGTTAATAGATTGGCTAGGAACAAAAGATGAGAATTCAACTGTTTTCGTCTCCTTTGGGAGTGAGTATTTCTTGTCAA</gDNA_template>
            <first_frame> H  S  R  E  N  Q  R  T  K  A  Y  N  E  Y  Y  F  K  G  I  D  V  P  I  F  G  L  W  T  H  I  S  I  S  K  R  S  *  E  A  C  G  Q  R  I  L  D  L  L  V  F  N  T  D  K  S  Q  I  H  H  Q  Q  N  P  R  K  V  C  *  F  D  S  A  Y  R  T  S  L  T  R  I  T  R  T  S  S  S  L  P  Y  H  Q  W  S  P  T  Q  S  Q  S  H  P  S  *  S  P  E  N  V  E  T  K  L  L  E  N  H  A  K  S  E  T  *  F  V  D  L  R  H  I  A  A  M  G  *  R  C  G  Y  *  T  K  H  S  S  S  *  A  F  D  F  G  C  C  C  V  F  V  F  F  Q  L  N  E  E  T  R  G  *  I  P  L  P  C  Y  L  S  Q  E  N  *  A  S  *  M  V  *  N  V  V  K  T  *  Q  R  G  R  R  T  *  *  W  F  S  L  W  K  Y  A  N  H  V  D  E  Y  F  *  N  F  R  S  Q  I  Y  *  L  L  H  *  T  D  K  L  E  S  C  S  S  W  F  T  S  S  R  F  N  H  *  *  R  G  G  R  *  H  G  V  N  R  L  A  R  N  K  R  *  E  F  N  C  F  R  L  L  W  E  *  V  F  L  V   </first_frame>
            <second_frame>  T  L  E  K  I  K  E  L  K  H  T  M  S  T  T  L  K  V  L  M  F  P  F  L  A  Y  G  H  I  S  P  Y  L  N  V  A  K  K  L  A  D  R  G  F  L  I  Y  L  C  S  T  P  I  N  L  K  S  T  I  N  K  I  P  E  K  Y  A  D  S  I  Q  L  I  E  L  H  L  P  E  L  P  E  L  P  P  H  Y  H  T  T  N  G  L  P  P  N  L  N  H  I  L  R  R  A  L  K  M  S  K  P  N  F  S  K  I  M  Q  N  L  K  P  D  L  L  I  Y  D  I  L  Q  Q  W  A  E  D  V  A  T  E  L  N  I  P  A  V  K  L  L  T  S  G  V  A  V  F  S  Y  F  F  N  L  T  K  K  P  E  V  E  F  P  Y  P  A  I  Y  L  R  K  I  E  L  V  R  W  C  E  T  L  S  K  H  N  K  E  G  E  E  H  D  D  G  L  A  Y  G  N  M  Q  I  M  L  M  S  T  S  K  I  L  E  A  K  Y  I  D  Y  C  I  E  L  T  N  W  K  V  V  P  V  G  S  L  V  Q  D  S  I  T  N  D  A  A  D  D  D  M  E  L  I  D  W  L  G  T  K  D  E  N  S  T  V  F  V  S  F  G  S  E  Y  F  L  S  </second_frame>
            <third_frame>   L  *  R  K  S  K  N  *  S  I  Q  *  V  L  L  *  R  Y  *  C  S  H  F  W  L  M  D  T  Y  L  H  I  *  T  *  L  R  S  L  R  T  E  D  S  *  F  T  C  V  Q  H  R  *  I  S  N  P  P  S  T  K  S  P  K  S  M  L  I  R  F  S  L  S  N  F  T  Y  Q  N  Y  P  N  F  L  L  I  T  I  P  P  M  V  S  H  P  I  S  I  T  S  F  V  E  P  *  K  C  R  N  Q  T  S  R  K  S  C  K  I  *  N  L  I  C  *  F  T  T  Y  C  S  N  G  L  K  M  W  L  L  N  *  T  F  Q  Q  L  S  F  *  L  R  V  L  L  C  F  R  I  F  S  T  *  R  R  N  Q  R  L  N  S  L  T  L  L  F  I  S  G  K  L  S  *  L  D  G  V  K  R  C  Q  N  I  T  K  R  E  K  N  M  M  M  V  *  L  M  E  I  C  K  S  C  *  *  V  L  L  K  F  *  K  P  N  I  L  I  I  A  L  N  *  Q  I  G  K  L  F  Q  L  V  H  *  F  K  I  Q  S  L  M  T  R  R  T  M  T  W  S  *  *  I  G  *  E  Q  K  M  R  I  Q  L  F  S  S  P  L  G  V  S  I  S  C  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37445" stop="38284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEKIKELKHTMSTTLKVLMFPFLAYGHISPYLNVAKKLADRGFLIYLCSTPINLKSTINKIPEKYADSIQLIELHLPELPELPPHYHTTNGLPPNLNHILRRALKMSKPNFSKIMQNLKPDLLIYDILQQWAEDVATELNIPAVKLLTSGVAVFSYFFNLTKKPEVEFPYPAIYLRKIELVRWCETLSKHNKEGEEHDDGLAYGNMQIMLMSTSKILEAKYIDYCIELTNWKVVPVGSLVQDSITNDAADDDMELIDWLGTKDENSTVFVSFGSEYFLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="38709" PGL_stop="38149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38709" e_stop="38149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38709" e_stop="38149" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38709" stop="38149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTTCCCCAATTTCCCCCGTTATGACACCTTTAAGAGTTTCCGCGATTTCTCCTCTGTAAATTTTTCCATCATCATCTCTAACAATCTCAACTGCGACTCCCAATTCTACTATCAACCTAGCATTCATTGGTTGATCAAGTTGCATAGGCATGGCAACTATAGGTACCCCAAAATCTATACTTTCCATCGCTGAATTCCAACCACAATGACTTATAAATCCTCCCGTACTCGGATGATTTAGAATTCTTGGTTGTGGTGCAAATTTGTCCAAAACTCTTCCCCTCTCTCCAATTCTTTCAAAAAAACCTTTTGGTAATACATCTTCAAGATTTTTCTCTTCACCTTTCGGAAATCTTACAACCCATATGAAATTAACATTACTTAACTCCAACCCGAAAGCTACTTCTTCCACATCTTCTTTTGACAAGAAATACTCACTCCCAAAGGAGACGAAAACAGTTGAATTCTCATCTTTTGTTCCTAGCCAATCTATTAACTCCATGTCATCGTCCGCCGCGTCATTAGTGATTGAATCTTGAACTAGTGAACCAACTGGA</gDNA_template>
            <first_frame> K  I  S  P  I  S  P  V  M  T  P  L  R  V  S  A  I  S  P  L  *  I  F  P  S  S  S  L  T  I  S  T  A  T  P  N  S  T  I  N  L  A  F  I  G  *  S  S  C  I  G  M  A  T  I  G  T  P  K  S  I  L  S  I  A  E  F  Q  P  Q  *  L  I  N  P  P  V  L  G  *  F  R  I  L  G  C  G  A  N  L  S  K  T  L  P  L  S  P  I  L  S  K  K  P  F  G  N  T  S  S  R  F  F  S  S  P  F  G  N  L  T  T  H  M  K  L  T  L  L  N  S  N  P  K  A  T  S  S  T  S  S  F  D  K  K  Y  S  L  P  K  E  T  K  T  V  E  F  S  S  F  V  P  S  Q  S  I  N  S  M  S  S  S  A  A  S  L  V  I  E  S  *  T  S  E  P  T  G </first_frame>
            <second_frame>  K  F  P  Q  F  P  P  L  *  H  L  *  E  F  P  R  F  L  L  C  K  F  F  H  H  H  L  *  Q  S  Q  L  R  L  P  I  L  L  S  T  *  H  S  L  V  D  Q  V  A  *  A  W  Q  L  *  V  P  Q  N  L  Y  F  P  S  L  N  S  N  H  N  D  L  *  I  L  P  Y  S  D  D  L  E  F  L  V  V  V  Q  I  C  P  K  L  F  P  S  L  Q  F  F  Q  K  N  L  L  V  I  H  L  Q  D  F  S  L  H  L  S  E  I  L  Q  P  I  *  N  *  H  Y  L  T  P  T  R  K  L  L  L  P  H  L  L  L  T  R  N  T  H  S  Q  R  R  R  K  Q  L  N  S  H  L  L  F  L  A  N  L  L  T  P  C  H  R  P  P  R  H  *  *  L  N  L  E  L  V  N  Q  L   </second_frame>
            <third_frame>   N  F  P  N  F  P  R  Y  D  T  F  K  S  F  R  D  F  S  S  V  N  F  S  I  I  I  S  N  N  L  N  C  D  S  Q  F  Y  Y  Q  P  S  I  H  W  L  I  K  L  H  R  H  G  N  Y  R  Y  P  K  I  Y  T  F  H  R  *  I  P  T  T  M  T  Y  K  S  S  R  T  R  M  I  *  N  S  W  L  W  C  K  F  V  Q  N  S  S  P  L  S  N  S  F  K  K  T  F  W  *  Y  I  F  K  I  F  L  F  T  F  R  K  S  Y  N  P  Y  E  I  N  I  T  *  L  Q  P  E  S  Y  F  F  H  I  F  F  *  Q  E  I  L  T  P  K  G  D  E  N  S  *  I  L  I  F  C  S  *  P  I  Y  *  L  H  V  I  V  R  R  V  I  S  D  *  I  L  N  *  *  T  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38469" stop="38167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRILGCGANLSKTLPLSPILSKKPFGNTSSRFFSSPFGNLTTHMKLTLLNSNPKATSSTSSFDKKYSLPKETKTVEFSSFVPSQSINSMSSSAASLVIES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38707" stop="38513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFPNFPRYDTFKSFRDFSSVNFSIIISNNLNCDSQFYYQPSIHWLIKLHRHGNYRYPKIYTFHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="40713" PGL_stop="41412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40713" e_stop="40814"/>
            <exon e_start="40887" e_stop="41412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40713" e_stop="40814" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.980">
            <gDNA_intron_boundary i_start="40815" i_stop="40886" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40887" e_stop="41412" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40814"/>
              <exon start="40887" stop="41312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40713" stop="40814"/>
              <exon start="40887" stop="41139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40903" stop="41412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTTTTAGGAAAAGAAATACCCGTCTTTCATCGACTAACTATGATGAATTGTATCGTTGGCCACTTGAATCAGAGGTCTTGCCTCCATCAAAGGACTTTAG : GTGTTTAAATAGAGCTTGCATAATTGAAGATCCTCAACGAGATTTGAATCCCGATGGATCAGCTTCAAATCCATGGAATCTGTGTAGTGTGGAACAAGTTGAATCACTCAAAGCTCTTATTAAAGCACTTCCTATGTGGTCTACCTGTTTCATGATTTTCGTGGATATGAATATATTTTCATTTTCCTTGCTTCAAACCAAGACGATGGATAGACACATCTTCCCTCACTTACAAGTACCAGCAGCATCATTCAGTGTGTTTATGATTACTGCTTTAACAATCTGGATTGCTTTCTACGACCGTGTTTTGATCCCTTTGCTATCAAAATATACTGGACAGCCTAGAGGGCTAAGTCCTGTTACCAGAATGGGGATTGGGTTAATAGCTTCCGGTATGTCTATTGCATTGTCAGCAATAACAGAAAGCATAAGACGACAAAGGGCAATAGAGGAAGGACATGAGGACGATCCAAATGCTTTAGTGAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTC</gDNA_template>
            <first_frame> S  F  *  E  K  K  Y  P  S  F  I  D  *  L  *  *  I  V  S  L  A  T  *  I  R  G  L  A  S  I  K  G  L  *  :  V  F  K  *  S  L  H  N  *  R  S  S  T  R  F  E  S  R  W  I  S  F  K  S  M  E  S  V  *  C  G  T  S  *  I  T  Q  S  S  Y  *  S  T  S  Y  V  V  Y  L  F  H  D  F  R  G  Y  E  Y  I  F  I  F  L  A  S  N  Q  D  D  G  *  T  H  L  P  S  L  T  S  T  S  S  I  I  Q  C  V  Y  D  Y  C  F  N  N  L  D  C  F  L  R  P  C  F  D  P  F  A  I  K  I  Y  W  T  A  *  R  A  K  S  C  Y  Q  N  G  D  W  V  N  S  F  R  Y  V  Y  C  I  V  S  N  N  R  K  H  K  T  T  K  G  N  R  G  R  T  *  G  R  S  K  C  F  S  E  H  V  C  Y  V  V  R  A  T  V  C  T  T  </first_frame>
            <second_frame>  A  F  R  K  R  N  T  R  L  S  S  T  N  Y  D  E  L  Y  R  W  P  L  E  S  E  V  L  P  P  S  K  D  F  R :   C  L  N  R  A  C  I  I  E  D  P  Q  R  D  L  N  P  D  G  S  A  S  N  P  W  N  L  C  S  V  E  Q  V  E  S  L  K  A  L  I  K  A  L  P  M  W  S  T  C  F  M  I  F  V  D  M  N  I  F  S  F  S  L  L  Q  T  K  T  M  D  R  H  I  F  P  H  L  Q  V  P  A  A  S  F  S  V  F  M  I  T  A  L  T  I  W  I  A  F  Y  D  R  V  L  I  P  L  L  S  K  Y  T  G  Q  P  R  G  L  S  P  V  T  R  M  G  I  G  L  I  A  S  G  M  S  I  A  L  S  A  I  T  E  S  I  R  R  Q  R  A  I  E  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L </second_frame>
            <third_frame>   L  L  G  K  E  I  P  V  F  H  R  L  T  M  M  N  C  I  V  G  H  L  N  Q  R  S  C  L  H  Q  R  T  L   : G  V  *  I  E  L  A  *  L  K  I  L  N  E  I  *  I  P  M  D  Q  L  Q  I  H  G  I  C  V  V  W  N  K  L  N  H  S  K  L  L  L  K  H  F  L  C  G  L  P  V  S  *  F  S  W  I  *  I  Y  F  H  F  P  C  F  K  P  R  R  W  I  D  T  S  S  L  T  Y  K  Y  Q  Q  H  H  S  V  C  L  *  L  L  L  *  Q  S  G  L  L  S  T  T  V  F  *  S  L  C  Y  Q  N  I  L  D  S  L  E  G  *  V  L  L  P  E  W  G  L  G  *  *  L  P  V  C  L  L  H  C  Q  Q  *  Q  K  A  *  D  D  K  G  Q  *  R  K  D  M  R  T  I  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40714" stop="40814"/>
                    <exon start="40887" stop="41412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFRKRNTRLSSTNYDELYRWPLESEVLPPSKDFRCLNRACIIEDPQRDLNPDGSASNPWNLCSVEQVESLKALIKALPMWSTCFMIFVDMNIFSFSLLQTKTMDRHIFPHLQVPAASFSVFMITALTIWIAFYDRVLIPLLSKYTGQPRGLSPVTRMGIGLIASGMSIALSAITESIRRQRAIEEGHEDDPNALVNMSAMWFVPQYALL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="57647" PGL_stop="57223"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57647" e_stop="57223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="57647" e_stop="57223" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57647" stop="57223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAGCCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTATGGCTGGATTTTTTACTGCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTGAAAAAT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  H  N  L  K  L  V  V  M  A  G  F  F  T  A  N  F  S  L  F  S  L  F  W  L  L  K  N  S  L  *  K   </first_frame>
            <second_frame>  T  K  I  Y  V  E  S  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  D  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  T  I  *  S  W  L  L  W  L  D  F  L  L  R  I  S  L  F  F  L  S  F  G  C  *  K  T  L  S  E  K  </second_frame>
            <third_frame>   P  R  F  T  W  K  A  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  T  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  W  I  F  Y  C  E  F  L  S  F  F  S  L  L  A  A  E  K  L  S  L  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0042B19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="58282" PGL_stop="63312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58282" e_stop="58979"/>
            <exon e_start="59606" e_stop="59896"/>
            <exon e_start="62617" e_stop="63312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58282" e_stop="58979" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59606" e_stop="59896" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.969">
            <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62617" e_stop="63312" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58282" stop="58979"/>
              <exon start="59606" stop="59780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58305" stop="58979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58305" stop="58644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58783" stop="58979"/>
              <exon start="59606" stop="59896"/>
              <exon start="62617" stop="62736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58783" stop="58972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58834" stop="58979"/>
              <exon start="59606" stop="59896"/>
              <exon start="62617" stop="62908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59840" stop="59896"/>
              <exon start="62617" stop="63297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62660" stop="63312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCAGCCACTCCCTTCTTCTTCTTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG : AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG : GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</gDNA_template>
            <first_frame> V  Q  P  L  P  S  S  S  S  M  A  A  A  I  S  L  S  F  S  L  D  P  Q  T  Q  H  N  Y  H  H  R  F  H  H  N  T  S  F  N  S  H  K  A  S  I  F  T  P  K  Y  T  F  P  F  V  I  S  S  K  S  H  T  S  N  L  I  I  P  L  S  T  S  Q  S  S  S  S  S  S  S  T  S  P  S  S  V  F  Q  T  P  L  Q  T  G  R  F  L  T  N  Q  E  L  E  K  L  E  S  L  G  K  Y  R  Y  F  Q  E  L  E  S  G  S  L  W  V  R  V  M  R  E  E  E  M  D  V  T  V  W  L  L  A  E  S  F  S  D  S  M  L  M  P  K  G  Y  V  K  F  M  A  Y  L  V  K  Q  Y  M  I  E  R  R  A  L  M  P  Y  T  A  T  L  L  G  F  Y  R  E  N  G  E  D  A  D  L  Q  L  A  G  T  V  E  V  C  F  D  K  R  G  A  N  A  N  S  P  T  P  T  P  P  K  N  S  P  Y  I  C  N  M  T  V  D  K  L  L  R  R :   R  G  I  G  W  H  L  L  K  A  S  E  E  L  I  S  Q  M  S  S  S  R  E  V  Y  L  H  C  R  M  I  D  T  A  P  L  N  M  Y  R  K  A  G  Y  T  I  V  E  T  D  N  I  F  I  L  L  A  L  Q  R  R  K  H  L  M  W  K  V  L  P  D  S  E  S  L  S  E  V  D  E  C  T  S  S  V  D  T  *  T  C  K  H  R  Q  V  L  R :   W  I  L  V  F  D  L  P  I  F  Y  R  F  I  Y  P  *  K  Q  S  C  *  T  L  *  H  A  E  A  I  C  N  S  V  K  *  Y  D  A  A  Q  A  I  T  I  A  *  *  T  L  L  L  Y  *  E  D  E  G  *  *  R  G  W  K  H  T  R  I  *  H  I  L  R  L  A  S  P  T  F  V  P  R  *  H  Q  T  K  R  H  D  N  C  S  F  Y  *  F  R  C  F  L  V  C  S  M  M  Y  Y  I  *  *  D  S  K  H  *  W  R  K  G  Y  K  F  L  S  C  R  E  I  N  E  K  K  T  K  Q  L  E  N  Y  *  I  I  M  H  *  N  R  K  P  A  E  G  E  R  R  M  K  K  *  I  *  K  Y  I  G  K  R  R  W  I  E  L  Y  E  N  P  V  G  V  C  T  K  Q  V  R  S  L  A  Y  D  K  Y  L  T  F  *  Q  L  V  W  M  V  V  I  T  Y  C  I  L  F  F  C  L  V  L  I  *  R  L  F  *  L  L  L  *  I  V  F  F  L   </first_frame>
            <second_frame>  F  S  H  S  L  L  L  L  Q  W  L  L  Q  F  L  Y  H  F  L  *  T  L  K  L  N  T  I  T  I  I  V  F  T  I  I  L  A  S  I  H  I  K  L  Q  S  L  P  Q  N  I  H  S  L  L  *  S  H  Q  N  H  T  L  Q  I  *  L  S  H  F  Q  H  P  N  L  L  H  L  L  P  Q  H  L  H  H  Q  S  S  K  P  H  F  K  Q  V  D  F  S  Q  I  K  N  L  K  S  L  N  L  *  G  N  I  G  I  F  K  N  W  N  L  D  H  C  G  F  V  *  *  G  K  K  K  W  M  L  L  F  G  C  W  L  S  L  F  L  I  L  C  *  C  L  K  G  M  *  N  S  W  H  I  *  *  S  S  I  *  L  R  E  E  H  *  C  L  I  L  L  H  F  L  D  S  I  E  K  M  E  K  M  Q  I  C  N  W  L  E  L  W  K  C  V  L  T  K  G  V  L  M  L  I  L  P  H  L  H  L  P  R  T  L  H  T  F  A  I  *  Q  *  I  S  C  L  G   : E  G  A  *  V  G  I  C  *  K  Q  A  R  N  *  F  L  K  *  V  L  L  E  R  F  T  C  T  V  E  *  L  I  L  L  H  S  T  C  I  E  K  L  D  I  P  L  L  R  Q  T  T  F  L  S  C  W  H  C  S  D  G  S  T  *  C  G  K  S  F  Q  I  Q  K  A  F  L  K  L  M  N  A  L  L  Q  *  T  R  E  H  V  N  I  D  K  F  *   : G  G  F  W  S  S  I  C  Q  Y  S  T  G  L  Y  I  P  E  N  N  H  V  E  L  Y  N  M  Q  K  L  Y  A  T  L  *  S  N  M  M  Q  H  R  Q  S  Q  *  R  D  K  H  C  C  S  I  K  K  M  K  D  N  E  E  A  G  N  I  Q  G  F  S  I  S  S  D  L  L  L  L  R  L  F  H  A  D  T  K  P  K  G  M  I  T  V  L  S  I  D  S  D  A  F  L  C  V  Q  *  C  I  T  F  D  K  T  V  N  I  D  G  E  K  D  T  S  F  *  A  V  E  K  L  M  R  R  K  Q  N  N  S  K  T  T  E  *  L  C  I  K  T  E  N  Q  L  K  E  K  E  E  *  K  N  R  Y  R  S  I  L  E  R  G  D  G  *  S  C  M  R  I  L  L  E  Y  V  Q  S  K  *  E  V  *  L  M  T  S  T  *  H  F  N  S  L  F  G  W  L  L  L  P  I  V  F  C  F  S  V  *  F  *  Y  N  V  C  F  N  C  Y  S  E  S  F  F  F  S  </second_frame>
            <third_frame>   S  A  T  P  F  F  F  F  N  G  C  C  N  F  F  I  I  F  F  R  P  S  N  S  T  Q  L  P  S  S  F  S  P  *  Y  *  L  Q  F  T  *  S  F  N  L  Y  P  K  I  Y  I  P  F  C  N  L  I  K  I  T  H  F  K  S  D  Y  P  T  F  N  I  P  I  F  F  I  F  F  L  N  I  S  I  I  S  L  P  N  P  T  S  N  R  *  I  S  H  K  S  R  T  *  K  A  *  I  F  R  E  I  *  V  F  S  R  I  G  I  W  I  I  V  G  S  C  D  E  G  R  R  N  G  C  Y  C  L  V  V  G  *  V  F  F  *  F  Y  V  D  A  *  R  V  C  E  I  H  G  I  F  S  E  A  V  Y  D  *  E  K  S  T  N  A  L  Y  C  Y  T  S  W  I  L  *  R  K  W  R  R  C  R  F  A  I  G  W  N  C  G  S  V  F  *  Q  K  G  C  *  C  *  F  S  H  T  Y  T  S  Q  E  L  S  I  H  L  Q  Y  D  S  R  *  A  A  *  E  :  K  G  H  R  L  A  S  V  E  S  K  R  G  T  N  F  S  N  E  F  F  *  R  G  L  L  A  L  S  N  D  *  Y  C  S  T  Q  H  V  *  K  S  W  I  Y  H  C  *  D  R  Q  H  F  Y  L  V  G  I  A  A  T  E  A  L  D  V  E  S  P  S  R  F  R  K  P  F  *  S  *  *  M  H  F  F  S  R  H  V  N  M  *  T  *  T  S  F  E  :  V  D  S  G  L  R  F  A  N  I  L  Q  V  Y  I  S  L  K  T  I  M  L  N  F  I  T  C  R  S  Y  M  Q  L  C  E  V  I  *  C  S  T  G  N  H  N  S  V  I  N  I  A  A  L  L  R  R  *  R  I  M  K  R  L  E  T  Y  K  D  L  A  Y  P  Q  T  C  F  S  Y  V  C  S  T  L  T  P  N  Q  K  A  *  *  L  F  F  L  L  I  Q  M  L  S  C  V  F  N  D  V  L  H  L  I  R  Q  *  T  L  M  E  K  R  I  Q  V  S  K  L  *  R  N  *  *  E  E  N  K  T  T  R  K  L  L  N  N  Y  A  L  K  Q  K  T  S  *  R  R  K  K  N  E  K  I  D  I  E  V  Y  W  K  E  E  M  D  R  V  V  *  E  S  C  W  S  M  Y  K  A  S  E  K  F  S  L  *  Q  V  L  D  I  L  T  A  C  L  D  G  C  Y  Y  L  L  Y  S  V  F  L  F  S  F  N  I  T  F  V  L  T  V  T  L  N  R  F  F  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58282" stop="58979"/>
                    <exon start="59606" stop="59870"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQPLPSSSSMAAAISLSFSLDPQTQHNYHHRFHHNTSFNSHKASIFTPKYTFPFVISSKSHTSNLIIPLSTSQSSSSSSSTSPSSVFQTPLQTGRFLTNQELEKLESLGKYRYFQELESGSLWVRVMREEEMDVTVWLLAESFSDSMLMPKGYVKFMAYLVKQYMIERRALMPYTATLLGFYRENGEDADLQLAGTVEVCFDKRGANANSPTPTPPKNSPYICNMTVDKLLRRRGIGWHLLKASEELISQMSSSREVYLHCRMIDTAPLNMYRKAGYTIVETDNIFILLALQRRKHLMWKVLPDSESLSEVDECTSSVDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60305" e_stop="61064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="60305" e_stop="61064" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60305" stop="61064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGT</gDNA_template>
            <first_frame> A  N  I  C  V  H  S  Q  I  S  A  L  T  C  N  L  *  Y  V  L  V  F  L  R  L  V  Q  A  I  I  K  L  L  R  K  F  E  I  F  R  L  N  L  G  C  V  L  L  L  L  *  Q  L  T  I  S  Y  H  S  H  C  S  F  Q  C  T  L  E  T  F  S  *  Y  F  N  F  *  I  *  R  M  L  L  G  A  C  *  *  D  F  V  S  S  M  S  I  *  E  G  L  R  S  F  *  T  Y  A  *  S  C  L  A  L  S  H  L  C  G  G  S  A  E  V  L  *  C  S  L  P  L  R  V  F  R  Y  C  R  F  S  H  S  E  M  L  G  *  Q  T  W  *  *  T  P  L  C  M  S  S  C  *  S  Q  G  Q  S  P  Y  A  A  S  S  Y  H  S  K  Y  V  S  P  A  V  S  S  K  K  W  M  S  T  S  E  K  I  S  K  D  I  S  F  F  E  H  F  S  Y  M  M  L  F  S  S  L  P  V  V  L  N  S  D  H  L  V  Q  G  *  G  P  Q  P  C  V  R  L  K  A  P  T  *  Q  H  Q  M  H  K  H  H  F  V  K  *  V  F  Q  </first_frame>
            <second_frame>  Q  I  Y  V  Y  I  V  K  S  L  H  *  R  V  I  F  D  T  S  L  F  F  S  D  S  S  R  L  L  L  N  Y  *  E  N  L  R  S  F  G  *  I  W  V  V  F  F  Y  Y  F  D  N  L  L  Y  P  T  I  L  I  A  L  S  N  V  H  L  K  L  L  A  D  I  S  T  S  E  F  E  E  C  F  L  V  H  V  D  K  I  L  C  H  P  C  Q  S  E  K  V  S  D  H  S  E  R  M  H  S  H  V  *  P  F  R  I  C  V  E  D  Q  L  K  F  F  D  A  V  Y  H  *  G  S  F  A  T  V  G  S  H  T  A  R  C  *  V  S  K  H  G  D  R  L  H  C  V  *  V  P  A  N  L  R  V  N  H  L  T  Q  L  L  L  I  I  Q  N  M  S  H  L  R  Y  H  Q  R  S  G  C  Q  L  V  K  R  F  P  K  I  F  H  F  L  N  T  S  P  I  *  C  F  F  R  H  Y  L  *  Y  *  I  L  I  T  W  S  K  G  E  V  H  S  P  A  S  G  *  K  L  Q  H  N  N  T  K  C  I  N  I  T  L  *  S  E  F  S  S </second_frame>
            <third_frame>   K  Y  M  C  T  *  S  N  L  C  T  N  V  *  S  L  I  R  P  C  F  S  Q  T  R  P  G  Y  Y  *  I  I  K  K  I  *  D  L  S  V  E  S  G  L  C  S  F  I  T  L  T  T  Y  Y  I  L  P  F  S  L  L  F  P  M  Y  T  *  N  F  *  L  I  F  Q  L  L  N  L  K  N  A  S  W  C  M  L  I  R  F  C  V  I  H  V  N  L  R  R  S  Q  I  I  L  N  V  C  I  V  M  F  S  P  F  A  F  V  W  R  I  S  *  S  S  L  M  Q  S  T  I  K  G  L  S  L  L  S  V  L  T  Q  R  D  A  R  L  A  N  M  V  I  D  S  I  V  Y  E  F  L  L  I  S  G  S  I  T  L  R  S  F  F  L  S  F  K  I  C  L  T  C  G  I  I  K  E  V  D  V  N  *  *  K  D  F  Q  R  Y  F  I  F  *  T  L  L  L  Y  D  A  F  F  V  I  T  C  S  T  K  F  *  S  L  G  P  R  V  R  S  T  A  L  R  P  V  K  S  S  N  I  T  T  P  N  A  *  T  S  L  C  K  V  S  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60429" stop="60638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWVVFFYYFDNLLYPTILIALSNVHLKLLADISTSEFEECFLVHVDKILCHPCQSEKVSDHSERMHSHV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60670" stop="60873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLMQSTIKGLSLLSVLTQRDARLANMVIDSIVYEFLLISGSITLRSFFLSFKICLTCGIIKEVDVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60785" stop="60979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQGQSPYAASSYHSKYVSPAVSSKKWMSTSEKISKDISFFEHFSYMMLFSSLPVVLNSDHLVQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="66477" PGL_stop="63236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64747"/>
            <exon e_start="63252" e_stop="63236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.997"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65066" e_stop="64747" e_length="320"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494"/>
          </intron>
          <exon e_serial="4" e_score="0.706">
            <gDNA_exon_boundary e_start="63252" e_stop="63236" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66449" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66444" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66375" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66358" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286774" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66334" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65681"/>
              <exon start="65066" stop="64763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64971" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAAT : AAAAACAGAATACAATA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  A  F  Q  E  E   : *  K  Q  N  T  I </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E  L  F  K  K  N  :  K  N  R  I  Q   </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K  S  F  S  R  R  I :   K  T  E  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64749"/>
            <exon e_start="63252" e_stop="63239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.997"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65066" e_stop="64749" e_length="318"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="64748" i_stop="63253" i_length="1496"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="63252" e_stop="63239" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66449" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66444" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66375" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66358" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286774" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66334" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65681"/>
              <exon start="65066" stop="64763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65066" stop="64749"/>
              <exon start="63252" stop="63239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGA : AAAAACAGAATACA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  A  F  Q  E  E :   K  T  E  Y  </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E  L  F  K  K   : K  K  Q  N  T </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K  S  F  S  R  R  :  K  N  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64763"/>
            <exon e_start="63921" e_stop="63889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.697"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65066" e_stop="64763" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64762" i_stop="63922" i_length="841"/>
          </intron>
          <exon e_serial="4" e_score="0.697">
            <gDNA_exon_boundary e_start="63921" e_stop="63889" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66472" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64763"/>
              <exon start="63921" stop="63889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65847" stop="65681"/>
              <exon start="65066" stop="64763"/>
              <exon start="63921" stop="63889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65681"/>
              <exon start="65066" stop="64763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285173" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGA : ATAAAACTAAAACTGAATAAATAAATAAAAAGA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  :  I  K  L  K  L  N  K  *  I  K  R </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E :   *  N  *  N  *  I  N  K  *  K   </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K   : N  K  T  K  T  E  *  I  N  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64763"/>
            <exon e_start="64644" e_stop="64639"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.833" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65066" e_stop="64763" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="64762" i_stop="64645" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="64644" e_stop="64639" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65681"/>
              <exon start="65066" stop="64763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65803" stop="65681"/>
              <exon start="65066" stop="64763"/>
              <exon start="64644" stop="64639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGA : GAGAAA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  :  E  K </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E :   R   </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K   : R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64763"/>
            <exon e_start="63252" e_stop="63243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.997"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65066" e_stop="64763" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="64762" i_stop="63253" i_length="1510"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="63252" e_stop="63243" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65844" stop="65681"/>
              <exon start="65066" stop="64763"/>
              <exon start="63252" stop="63243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65834" stop="65681"/>
              <exon start="65066" stop="64763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285173" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGA : AAAAACAGAA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  :  K  N  R  </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E :   K  T  E </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K   : K  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="66477" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64790"/>
            <exon e_start="63803" e_stop="63784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.555" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66477" e_stop="66293" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65066" e_stop="64790" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.555">
            <gDNA_intron_boundary i_start="64789" i_stop="63804" i_length="986"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="63803" e_stop="63784" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66477" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66474" stop="66293"/>
              <exon start="65905" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66463" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66426" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66416" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66412" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66392" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64790"/>
              <exon start="63803" stop="63784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAA : CCATAACTATAAGAAGAAAA</gDNA_template>
            <first_frame> R  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  :  P  *  L  *  E  E   </first_frame>
            <second_frame>  E  K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  N :   H  N  Y  K  K  K  </second_frame>
            <third_frame>   K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *   : T  I  T  I  R  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="68421" PGL_stop="69730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68421" e_stop="68638"/>
            <exon e_start="69271" e_stop="69730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68421" e_stop="68638" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68639" i_stop="69270" i_length="632"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="69271" e_stop="69730" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68421" stop="68638"/>
              <exon start="69271" stop="69471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68430" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68431" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68434" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68434" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68434" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68434" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68465" stop="68638"/>
              <exon start="69271" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68466" stop="68638"/>
              <exon start="69271" stop="69730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68473" stop="68638"/>
              <exon start="69271" stop="69719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68476" stop="68638"/>
              <exon start="69271" stop="69713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68502" stop="68638"/>
              <exon start="69271" stop="69708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAG : GGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTATGTACTCCTT</gDNA_template>
            <first_frame> N  I  V  I  S  Q  F  K  K  N  V  I  Q  F  R  K  N  *  C  *  S  *  G  E  K  S  S  *  Q  I  L  E  W  H  *  G  L  N  K  F  V  P  Q  G  F  T  *  *  I  Q  E  H  *  S  C  *  R  *  W  Q  V  C  W  F  C  S  I  D  Q  I  Y  *  R :   V  S  I  G  D  I  L  K  R  E  N  R  V  N  *  *  G  K  *  N  I  G  L  F  S  Y  *  W  *  N  L  E  I  L  Q  E  F  Q  R  H  P  N  C  D  S  K  G  K  W  K  F  G  *  V  V  L  *  I  *  K  G  K  *  *  N  S  *  A  T  N  H  *  R  I  C  C  Q  E  F  Q  E  S  *  C  L  S  H  W  G  I  K  R  P  Y  D  I  Y  A  M  *  *  K  L  I  I  F  T  *  Y  I  V  F  N  E  *  N  Y  V  Q  V  C  E  *  L  L  Y  F  S  S  H  V  S  V  I  K  T  *  I  N  K  T  I  M  G  L  R  P  Y  Y  Y  V  L  L </first_frame>
            <second_frame>  I  L  *  S  L  N  L  K  K  M  S  S  N  L  G  K  I  D  V  E  V  E  V  K  S  P  V  D  K  F  W  N  G  I  R  D  S  I  N  L  F  P  K  A  S  P  N  E  Y  K  S  I  E  V  V  E  G  D  G  K  S  V  G  S  V  L  L  I  K  Y  T  E   : G  F  P  L  V  T  F  S  K  E  K  I  E  S  I  D  E  A  N  K  T  L  V  Y  S  V  I  D  G  E  T  L  K  Y  Y  K  S  F  K  G  T  L  T  V  I  P  K  G  N  G  S  L  V  K  W  C  C  E  F  E  R  A  N  D  E  I  P  E  P  Q  I  I  K  E  F  A  V  K  N  F  K  N  L  D  A  Y  L  I  G  A  *  K  D  L  M  T  Y  M  L  C  D  R  N  *  *  S  S  H  S  I  *  F  L  M  N  K  I  T  C  R  Y  V  S  S  Y  F  T  F  L  V  M  *  V  *  *  K  L  E  *  I  K  L  *  W  G  *  D  L  I  T  M  Y  S   </second_frame>
            <third_frame>   Y  C  N  L  S  I  *  K  K  C  H  P  I  *  E  K  L  M  L  K  L  R  *  K  V  Q  L  T  N  F  G  M  A  L  G  T  Q  *  I  C  S  P  R  L  H  L  M  N  T  R  A  L  K  L  L  K  V  M  A  S  L  L  V  L  F  Y  *  S  N  I  L  K  :  G  F  H  W  *  H  S  Q  K  R  K  *  S  Q  L  M  R  Q  I  K  H  W  F  I  Q  L  L  M  V  K  P  *  N  T  T  R  V  S  K  A  P  *  L  *  F  Q  R  E  M  E  V  W  L  S  G  V  V  N  L  K  G  Q  M  M  K  F  L  S  H  K  S  L  K  N  L  L  S  R  I  S  R  I  L  M  L  I  S  L  G  H  K  K  T  L  *  H  I  C  Y  V  I  E  I  N  N  L  H  I  V  Y  S  F  *  *  I  K  L  R  A  G  M  *  V  A  T  L  L  F  *  S  C  K  C  N  K  N  L  N  K  *  N  Y  N  G  V  K  T  L  L  L  C  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68431" stop="68638"/>
                    <exon start="69271" stop="69542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNLKKMSSNLGKIDVEVEVKSPVDKFWNGIRDSINLFPKASPNEYKSIEVVEGDGKSVGSVLLIKYTEGFPLVTFSKEKIESIDEANKTLVYSVIDGETLKYYKSFKGTLTVIPKGNGSLVKWCCEFERANDEIPEPQIIKEFAVKNFKNLDAYLIGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68435" e_stop="69721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68435" e_stop="69721" e_length="1287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68435" stop="68953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68910" stop="69721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAATTCAGACTGTGCCACGTAATCTGAATTCACATAGTGACATGTTAAGTATATATAGTGTGACAAACCTGGATTGTAGTGCACTGGTGGAAGTGTTTCACTGTTAACCAGAGGTCTCATGTTCGAGCCCTGTGGATGAAGAAAATCTTGTTGGGAGTGTCACACCCGAACGGACTCTGCAGTGAGCGATCCAGAATTAGTCGGAGCTCCAATTCGGCCTCCGAACATCGATTGGAAAACCAAAAAAAAGTATATATACTCTGTTCTTTTGTTCTATTTTTCATTTTATTTTATAATTTCATTGTTTTTTTTTCATACAGGGTTTCCATTGGTGACATTCTCAAAAGAGAAAATAGAGTCAATTGATGAGGCAAATAAAACATTGGTTTATTCAGTTATTGATGGTGAAACCTTGAAATACTACAAGAGTTTCAAAGGCACCCTAACTGTGATTCCAAAGGGAAATGGAAGTTTGGTTAAGTGGTGTTGTGAATTTGAAAGGGCAAATGATGAAATTCCTGAGCCACAAATCATTAAAGAATTTGCTGTCAAGAATTTCAAGAATCTTGATGCTTATCTCATTGGGGCATAAAAAGACCTTATGACATATATGCTATGTGATAGAAATTAATAATCTTCACATAGTATATAGTTTTTAATGAATAAAATTACGTGCAGGTATGTGAGTAGCTACTTTACTTTTCTAGTCATGTAAGTGTAATAAAAACTTGAATAAATAAAACTATAATGGGGTTAAGACCTTATTACTAT</gDNA_template>
            <first_frame> S  I  *  K  K  C  H  P  I  *  E  K  L  M  L  K  L  R  *  K  V  Q  L  T  N  F  G  M  A  L  G  T  Q  *  I  C  S  P  R  L  H  L  M  N  T  R  A  L  K  L  L  K  V  M  A  S  L  L  V  L  F  Y  *  S  N  I  L  K  V  M  F  M  H  C  F  L  M  F  *  L  I  Y  V  S  *  Q  I  T  Y  L  F  Y  R  F  Q  I  L  I  F  Y  G  W  F  V  G  Y  L  I  T  I  L  Q  K  K  W  S  L  A  I  K  T  N  P  K  K  R  I  F  *  F  N  I  K  R  L  K  F  S  I  S  K  F  T  I  K  Y  *  K  *  R  I  S  K  F  *  L  C  H  I  D  Y  K  S  L  E  V  Q  I  S  K  F  F  E  F  R  L  C  H  V  I  *  I  H  I  V  T  C  *  V  Y  I  V  *  Q  T  W  I  V  V  H  W  W  K  C  F  T  V  N  Q  R  S  H  V  R  A  L  W  M  K  K  I  L  L  G  V  S  H  P  N  G  L  C  S  E  R  S  R  I  S  R  S  S  N  S  A  S  E  H  R  L  E  N  Q  K  K  V  Y  I  L  C  S  F  V  L  F  F  I  L  F  Y  N  F  I  V  F  F  S  Y  R  V  S  I  G  D  I  L  K  R  E  N  R  V  N  *  *  G  K  *  N  I  G  L  F  S  Y  *  W  *  N  L  E  I  L  Q  E  F  Q  R  H  P  N  C  D  S  K  G  K  W  K  F  G  *  V  V  L  *  I  *  K  G  K  *  *  N  S  *  A  T  N  H  *  R  I  C  C  Q  E  F  Q  E  S  *  C  L  S  H  W  G  I  K  R  P  Y  D  I  Y  A  M  *  *  K  L  I  I  F  T  *  Y  I  V  F  N  E  *  N  Y  V  Q  V  C  E  *  L  L  Y  F  S  S  H  V  S  V  I  K  T  *  I  N  K  T  I  M  G  L  R  P  Y  Y  Y </first_frame>
            <second_frame>  Q  F  K  K  N  V  I  Q  F  R  K  N  *  C  *  S  *  G  E  K  S  S  *  Q  I  L  E  W  H  *  G  L  N  K  F  V  P  Q  G  F  T  *  *  I  Q  E  H  *  S  C  *  R  *  W  Q  V  C  W  F  C  S  I  D  Q  I  Y  *  R  *  C  S  C  I  V  S  S  C  F  N  *  F  T  C  R  N  R  *  L  I  Y  F  T  D  F  K  F  S  F  F  M  D  G  L  S  V  T  *  S  L  Y  Y  K  K  N  G  H  *  Q  *  K  L  I  Q  K  N  V  F  S  N  L  I  S  K  D  L  N  F  L  Y  L  N  S  L  L  N  I  R  S  N  E  S  Q  N  S  D  Y  A  T  *  I  I  K  V  *  K  Y  K  S  Q  N  S  L  N  S  D  C  A  T  *  S  E  F  T  *  *  H  V  K  Y  I  *  C  D  K  P  G  L  *  C  T  G  G  S  V  S  L  L  T  R  G  L  M  F  E  P  C  G  *  R  K  S  C  W  E  C  H  T  R  T  D  S  A  V  S  D  P  E  L  V  G  A  P  I  R  P  P  N  I  D  W  K  T  K  K  K  Y  I  Y  S  V  L  L  F  Y  F  S  F  Y  F  I  I  S  L  F  F  F  H  T  G  F  P  L  V  T  F  S  K  E  K  I  E  S  I  D  E  A  N  K  T  L  V  Y  S  V  I  D  G  E  T  L  K  Y  Y  K  S  F  K  G  T  L  T  V  I  P  K  G  N  G  S  L  V  K  W  C  C  E  F  E  R  A  N  D  E  I  P  E  P  Q  I  I  K  E  F  A  V  K  N  F  K  N  L  D  A  Y  L  I  G  A  *  K  D  L  M  T  Y  M  L  C  D  R  N  *  *  S  S  H  S  I  *  F  L  M  N  K  I  T  C  R  Y  V  S  S  Y  F  T  F  L  V  M  *  V  *  *  K  L  E  *  I  K  L  *  W  G  *  D  L  I  T   </second_frame>
            <third_frame>   N  L  K  K  M  S  S  N  L  G  K  I  D  V  E  V  E  V  K  S  P  V  D  K  F  W  N  G  I  R  D  S  I  N  L  F  P  K  A  S  P  N  E  Y  K  S  I  E  V  V  E  G  D  G  K  S  V  G  S  V  L  L  I  K  Y  T  E  G  N  V  H  A  L  F  P  H  V  L  I  N  L  R  V  V  T  D  N  L  F  I  L  Q  I  S  N  S  H  F  L  W  M  V  C  R  L  L  D  H  Y  T  T  K  K  M  V  I  S  N  K  N  *  S  K  K  T  Y  F  L  I  *  Y  Q  K  T  *  I  F  Y  I  *  I  H  Y  *  I  L  E  V  T  N  L  K  I  L  T  M  P  H  R  L  *  K  F  R  S  T  N  L  K  I  L  *  I  Q  T  V  P  R  N  L  N  S  H  S  D  M  L  S  I  Y  S  V  T  N  L  D  C  S  A  L  V  E  V  F  H  C  *  P  E  V  S  C  S  S  P  V  D  E  E  N  L  V  G  S  V  T  P  E  R  T  L  Q  *  A  I  Q  N  *  S  E  L  Q  F  G  L  R  T  S  I  G  K  P  K  K  S  I  Y  T  L  F  F  C  S  I  F  H  F  I  L  *  F  H  C  F  F  F  I  Q  G  F  H  W  *  H  S  Q  K  R  K  *  S  Q  L  M  R  Q  I  K  H  W  F  I  Q  L  L  M  V  K  P  *  N  T  T  R  V  S  K  A  P  *  L  *  F  Q  R  E  M  E  V  W  L  S  G  V  V  N  L  K  G  Q  M  M  K  F  L  S  H  K  S  L  K  N  L  L  S  R  I  S  R  I  L  M  L  I  S  L  G  H  K  K  T  L  *  H  I  C  Y  V  I  E  I  N  N  L  H  I  V  Y  S  F  *  *  I  K  L  R  A  G  M  *  V  A  T  L  L  F  *  S  C  K  C  N  K  N  L  N  K  *  N  Y  N  G  V  K  T  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69090" stop="69542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKSCWECHTRTDSAVSDPELVGAPIRPPNIDWKTKKKYIYSVLLFYFSFYFIISLFFFHTGFPLVTFSKEKIESIDEANKTLVYSVIDGETLKYYKSFKGTLTVIPKGNGSLVKWCCEFERANDEIPEPQIIKEFAVKNFKNLDAYLIGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68437" stop="68799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLKKMSSNLGKIDVEVEVKSPVDKFWNGIRDSINLFPKASPNEYKSIEVVEGDGKSVGSVLLIKYTEGNVHALFPHVLINLRVVTDNLFILQISNSHFLWMVCRLLDHYTTKKMVISNKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="71540" PGL_stop="70495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71540" e_stop="71443"/>
            <exon e_start="71319" e_stop="71168"/>
            <exon e_start="70999" e_stop="70495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.649" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71540" e_stop="71443" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.913">
            <gDNA_intron_boundary i_start="71442" i_stop="71320" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71319" e_stop="71168" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.649">
            <gDNA_intron_boundary i_start="71167" i_stop="71000" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="70999" e_stop="70495" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71540" stop="71443"/>
              <exon start="71319" stop="71168"/>
              <exon start="70999" stop="70495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTATACAATCAGCAATATTTGCTTTGGTTATGGAAAAAGATCTAAATGCTTGGAAACTTGAGCTTAACATGGAGCTTCTTGTTATAGTTTTAACG : GCAATTTTTGGGAGTTTAATACGTAGCAATGTTCAAATGTGGTGCATGCGTTTGAAAGGATCTTCTTTTCCTCTATTTTTCAAGCCAGTGGGAATTCCAACAGCTAGTGCTTGTGGATGTTTACTTTTTGCTGATACTTTTCACTATGGAAG : TATGTTGAGTGCAATTATATGTGGAATGGGTTATTTCACTACACTATGGGGACAACTCAAAGATGATGAAACAAGTAAAAACATTAAGGGTAGGATATTACCAACAACTAGTGATGAGAAAGTTCCACTTTTGGAAGAAAGAGGAGAAGACGGAGACGAAGAAGTCGAAGGAGATTCAAAAGTCTAATAAAAGATGGAAATTTAATAAGATGATGAAGATAAATGTTAAGTGTTTGCTAGGAATTTTAATATTTGTTGTATATATGTGTTGGAGGGAAGTATTTTTTTCAAACCTTCCAATGCAAGTTGAACAATGAAATTGTTGTTCAACATTATATTGATTGTTTCTCTAGGTAGCTATAGAGGTTACGTACGCTCTTGTTGATATGTGTGATTGAGAAATTTGGTGTATGTTGATTAATTTCATCCCATTTGTAAATAGTGTGCATTGATTTTGATGAGATATCGATAATACGAGTTTGTGATGGTATATATAAGATTGCGT</gDNA_template>
            <first_frame> E  L  Y  N  Q  Q  Y  L  L  W  L  W  K  K  I  *  M  L  G  N  L  S  L  T  W  S  F  L  L  *  F  *  R :   Q  F  L  G  V  *  Y  V  A  M  F  K  C  G  A  C  V  *  K  D  L  L  F  L  Y  F  S  S  Q  W  E  F  Q  Q  L  V  L  V  D  V  Y  F  L  L  I  L  F  T  M  E   : V  C  *  V  Q  L  Y  V  E  W  V  I  S  L  H  Y  G  D  N  S  K  M  M  K  Q  V  K  T  L  R  V  G  Y  Y  Q  Q  L  V  M  R  K  F  H  F  W  K  K  E  E  K  T  E  T  K  K  S  K  E  I  Q  K  S  N  K  R  W  K  F  N  K  M  M  K  I  N  V  K  C  L  L  G  I  L  I  F  V  V  Y  M  C  W  R  E  V  F  F  S  N  L  P  M  Q  V  E  Q  *  N  C  C  S  T  L  Y  *  L  F  L  *  V  A  I  E  V  T  Y  A  L  V  D  M  C  D  *  E  I  W  C  M  L  I  N  F  I  P  F  V  N  S  V  H  *  F  *  *  D  I  D  N  T  S  L  *  W  Y  I  *  D  C   </first_frame>
            <second_frame>  N  Y  T  I  S  N  I  C  F  G  Y  G  K  R  S  K  C  L  E  T  *  A  *  H  G  A  S  C  Y  S  F  N   : G  N  F  W  E  F  N  T  *  Q  C  S  N  V  V  H  A  F  E  R  I  F  F  S  S  I  F  Q  A  S  G  N  S  N  S  *  C  L  W  M  F  T  F  C  *  Y  F  S  L  W  K  :  Y  V  E  C  N  Y  M  W  N  G  L  F  H  Y  T  M  G  T  T  Q  R  *  *  N  K  *  K  H  *  G  *  D  I  T  N  N  *  *  *  E  S  S  T  F  G  R  K  R  R  R  R  R  R  R  S  R  R  R  F  K  S  L  I  K  D  G  N  L  I  R  *  *  R  *  M  L  S  V  C  *  E  F  *  Y  L  L  Y  I  C  V  G  G  K  Y  F  F  Q  T  F  Q  C  K  L  N  N  E  I  V  V  Q  H  Y  I  D  C  F  S  R  *  L  *  R  L  R  T  L  L  L  I  C  V  I  E  K  F  G  V  C  *  L  I  S  S  H  L  *  I  V  C  I  D  F  D  E  I  S  I  I  R  V  C  D  G  I  Y  K  I  A  </second_frame>
            <third_frame>   T  I  Q  S  A  I  F  A  L  V  M  E  K  D  L  N  A  W  K  L  E  L  N  M  E  L  L  V  I  V  L  T  :  A  I  F  G  S  L  I  R  S  N  V  Q  M  W  C  M  R  L  K  G  S  S  F  P  L  F  F  K  P  V  G  I  P  T  A  S  A  C  G  C  L  L  F  A  D  T  F  H  Y  G  S :   M  L  S  A  I  I  C  G  M  G  Y  F  T  T  L  W  G  Q  L  K  D  D  E  T  S  K  N  I  K  G  R  I  L  P  T  T  S  D  E  K  V  P  L  L  E  E  R  G  E  D  G  D  E  E  V  E  G  D  S  K  V  *  *  K  M  E  I  *  *  D  D  E  D  K  C  *  V  F  A  R  N  F  N  I  C  C  I  Y  V  L  E  G  S  I  F  F  K  P  S  N  A  S  *  T  M  K  L  L  F  N  I  I  L  I  V  S  L  G  S  Y  R  G  Y  V  R  S  C  *  Y  V  *  L  R  N  L  V  Y  V  D  *  F  H  P  I  C  K  *  C  A  L  I  L  M  R  Y  R  *  Y  E  F  V  M  V  Y  I  R  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71538" stop="71443"/>
                    <exon start="71319" stop="71168"/>
                    <exon start="70999" stop="70813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIQSAIFALVMEKDLNAWKLELNMELLVIVLTAIFGSLIRSNVQMWCMRLKGSSFPLFFKPVGIPTASACGCLLFADTFHYGSMLSAIICGMGYFTTLWGQLKDDETSKNIKGRILPTTSDEKVPLLEERGEDGDEEVEGDSKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="90687" PGL_stop="88146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89872" e_stop="89756"/>
            <exon e_start="89210" e_stop="88823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89872" e_stop="89756" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="89210" e_stop="88823" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89872" stop="89756"/>
              <exon start="89210" stop="88823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89871" stop="89756"/>
              <exon start="89210" stop="88823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG : TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAATTTTCTCGGGAAAACGTGTAAAAAAACATGACAAACTAAAATGAAA</gDNA_template>
            <first_frame> N  M  V  P  Q  E  D  R  S  S  L  C  F  N  V  *  A  L  C  H  C  F  C  Y  P  H  W  Y  L  L  L  *  R  C  F  L  L  R  K  :  F  G  G  I  S  D  H  S  D  W  V  L  C  C  D  V  G  K  N  S  R  K  I  L  *  G  E  Q  L  R  N  T  C  *  K  *  C  P  S  A  A  K  *  G  I  N  T  V  F  E  S  A  R  V  R  L  N  *  F  Y  V  I  F  I  I  F  H  *  T  T  Q  I  L  N  Q  F  I  S  R  K  E  I  I  V  C  *  L  *  R  *  C  F  K  F  I  L  M  Y  Y  I  D  K  N  K  Y  I  K  I  I  *  P  S  Y  *  F  S  R  E  N  V  *  K  N  M  T  N  *  N  E  </first_frame>
            <second_frame>  T  W  C  L  K  K  T  D  P  L  F  V  S  M  F  K  P  F  A  I  V  F  A  I  L  I  G  T  F  C  F  R  D  A  F  Y  L  G  S :   L  V  G  S  V  T  T  V  I  G  F  Y  A  V  M  W  G  K  T  Q  E  K  Y  Y  E  G  N  N  L  E  T  L  A  E  N  N  V  P  L  L  Q  N  E  A  *  I  R  C  L  S  Q  L  V  C  A  S  I  N  F  M  *  Y  L  L  S  F  I  K  Q  H  K  Y  *  I  N  S  F  R  G  K  K  *  L  Y  V  S  C  K  D  S  V  L  N  L  Y  S  C  I  I  S  I  K  I  N  I  *  K  S  F  N  Q  V  T  N  F  L  G  K  T  C  K  K  T  *  Q  T  K  M  K </second_frame>
            <third_frame>   H  G  A  S  R  R  Q  I  L  S  L  F  Q  C  L  S  P  L  P  L  F  L  L  S  S  L  V  P  F  A  L  E  M  L  S  T  *  E   : V  W  W  D  Q  *  P  Q  *  L  G  F  M  L  *  C  G  E  K  L  K  K  N  T  M  R  G  T  T  *  K  H  L  L  K  I  M  S  L  C  C  K  M  R  H  K  Y  G  V  *  V  S  S  C  A  P  Q  L  I  L  C  D  I  Y  Y  L  S  L  N  N  T  N  T  E  S  I  H  F  E  E  R  N  N  C  M  L  V  V  K  I  V  F  *  I  Y  T  H  V  L  Y  R  *  K  *  I  Y  K  N  H  L  T  K  L  L  I  F  S  G  K  R  V  K  K  H  D  K  L  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89871" stop="89756"/>
                    <exon start="89210" stop="89075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWCLKKTDPLFVSMFKPFAIVFAILIGTFCFRDAFYLGSLVGSVTTVIGFYAVMWGKTQEKYYEGNNLETLAENNVPLLQNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89847" e_stop="89756"/>
            <exon e_start="89210" e_stop="88869"/>
            <exon e_start="88509" e_stop="88464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.974"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="89847" e_stop="89756" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="89210" e_stop="88869" e_length="342"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88868" i_stop="88510" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="0.652">
            <gDNA_exon_boundary e_start="88509" e_stop="88464" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89847" stop="89756"/>
              <exon start="89210" stop="88869"/>
              <exon start="88509" stop="88464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG : TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATAGTGTTTTAAATTTATACTCATGTATTATATCGATAAAAATAAATATATAAAAATCATTTAACCAAGTTACTAA : AAATAAGTAAAATAAAGAAACTAATCATAATAAAATTTAAAATATA</gDNA_template>
            <first_frame> P  L  F  V  S  M  F  K  P  F  A  I  V  F  A  I  L  I  G  T  F  C  F  R  D  A  F  Y  L  G  S :   L  V  G  S  V  T  T  V  I  G  F  Y  A  V  M  W  G  K  T  Q  E  K  Y  Y  E  G  N  N  L  E  T  L  A  E  N  N  V  P  L  L  Q  N  E  A  *  I  R  C  L  S  Q  L  V  C  A  S  I  N  F  M  *  Y  L  L  S  F  I  K  Q  H  K  Y  *  I  N  S  F  R  G  K  K  *  L  Y  V  S  C  K  D  S  V  L  N  L  Y  S  C  I  I  S  I  K  I  N  I  *  K  S  F  N  Q  V  T  K :   N  K  *  N  K  E  T  N  H  N  K  I  *  N  I </first_frame>
            <second_frame>  L  S  L  F  Q  C  L  S  P  L  P  L  F  L  L  S  S  L  V  P  F  A  L  E  M  L  S  T  *  E   : V  W  W  D  Q  *  P  Q  *  L  G  F  M  L  *  C  G  E  K  L  K  K  N  T  M  R  G  T  T  *  K  H  L  L  K  I  M  S  L  C  C  K  M  R  H  K  Y  G  V  *  V  S  S  C  A  P  Q  L  I  L  C  D  I  Y  Y  L  S  L  N  N  T  N  T  E  S  I  H  F  E  E  R  N  N  C  M  L  V  V  K  I  V  F  *  I  Y  T  H  V  L  Y  R  *  K  *  I  Y  K  N  H  L  T  K  L  L   : K  I  S  K  I  K  K  L  I  I  I  K  F  K  I   </second_frame>
            <third_frame>   S  L  C  F  N  V  *  A  L  C  H  C  F  C  Y  P  H  W  Y  L  L  L  *  R  C  F  L  L  R  K  :  F  G  G  I  S  D  H  S  D  W  V  L  C  C  D  V  G  K  N  S  R  K  I  L  *  G  E  Q  L  R  N  T  C  *  K  *  C  P  S  A  A  K  *  G  I  N  T  V  F  E  S  A  R  V  R  L  N  *  F  Y  V  I  F  I  I  F  H  *  T  T  Q  I  L  N  Q  F  I  S  R  K  E  I  I  V  C  *  L  *  R  *  C  F  K  F  I  L  M  Y  Y  I  D  K  N  K  Y  I  K  I  I  *  P  S  Y  *  :  K  *  V  K  *  R  N  *  S  *  *  N  L  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89847" stop="89756"/>
                    <exon start="89210" stop="89075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLFVSMFKPFAIVFAILIGTFCFRDAFYLGSLVGSVTTVIGFYAVMWGKTQEKYYEGNNLETLAENNVPLLQNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90687" e_stop="90544"/>
            <exon e_start="90352" e_stop="90194"/>
            <exon e_start="89907" e_stop="89756"/>
            <exon e_start="89210" e_stop="88942"/>
            <exon e_start="88172" e_stop="88146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.499" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.586" e_score="0.993"/>
          <exon-only e_score="0.519"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90687" e_stop="90544" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.499" acc_prob="0.991">
            <gDNA_intron_boundary i_start="90543" i_stop="90353" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90352" e_stop="90194" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.828">
            <gDNA_intron_boundary i_start="90193" i_stop="89908" i_length="286"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89907" e_stop="89756" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89755" i_stop="89211" i_length="545"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="89210" e_stop="88942" e_length="269"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.586">
            <gDNA_intron_boundary i_start="88941" i_stop="88173" i_length="769"/>
          </intron>
          <exon e_serial="5" e_score="0.519">
            <gDNA_exon_boundary e_start="88172" e_stop="88146" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90687" stop="90544"/>
              <exon start="90352" stop="90194"/>
              <exon start="89907" stop="89756"/>
              <exon start="89210" stop="88942"/>
              <exon start="88172" stop="88146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTTGTTTTGACATTTTATAAGGGCCCTCCAATCATTAACCAACACTTAACTTCTACTTTCTCATCTCAACAAAATTGGATCCTTGGAGGAGTTATACTTGCTTGTGAGTCTATGTCCACTTCACTATGGTACATTATTCAG : GCTTCAATTCTTAAGATATACCAAGAAGAGATGGTGATAGTGTGTTTGTATTGCTTCTTTGTGACCATCATATCTACATTAATATCCCTAGTGGTGGAGAGAAATACAAATGCTTGGATCATATATCTAGACATTCGTCTCATTGCTATTCTCTACTCG : GGTATAATTGGTATAGCATTTAGGAGTTGTATGACAACATGGTGCCTCAAGAAGACAGATCCTCTCTTTGTTTCAATGTTTAAGCCCTTTGCCATTGTTTTTGCTATCCTCATTGGTACCTTTTGCTTTAGAGATGCTTTCTACTTAGGAAG : TTTGGTGGGATCAGTGACCACAGTGATTGGGTTTTATGCTGTGATGTGGGGAAAAACTCAAGAAAAATACTATGAGGGGAACAACTTAGAAACACTTGCTGAAAATAATGTCCCTCTGCTGCAAAATGAGGCATAAATACGGTGTTTGAGTCAGCTCGTGTGCGCCTCAATTAATTTTATGTGATATTTATTATCTTTCATTAAACAACACAAATACTGAATCAATTCATTTCGAGGAAAGAAATAATTGTATGTTAGTTGTAAAGATA : AGATGGAAATGAGTGGAGTGGTTCCAT</gDNA_template>
            <first_frame> A  F  V  L  T  F  Y  K  G  P  P  I  I  N  Q  H  L  T  S  T  F  S  S  Q  Q  N  W  I  L  G  G  V  I  L  A  C  E  S  M  S  T  S  L  W  Y  I  I  Q  :  A  S  I  L  K  I  Y  Q  E  E  M  V  I  V  C  L  Y  C  F  F  V  T  I  I  S  T  L  I  S  L  V  V  E  R  N  T  N  A  W  I  I  Y  L  D  I  R  L  I  A  I  L  Y  S  :  G  I  I  G  I  A  F  R  S  C  M  T  T  W  C  L  K  K  T  D  P  L  F  V  S  M  F  K  P  F  A  I  V  F  A  I  L  I  G  T  F  C  F  R  D  A  F  Y  L  G  S :   L  V  G  S  V  T  T  V  I  G  F  Y  A  V  M  W  G  K  T  Q  E  K  Y  Y  E  G  N  N  L  E  T  L  A  E  N  N  V  P  L  L  Q  N  E  A  *  I  R  C  L  S  Q  L  V  C  A  S  I  N  F  M  *  Y  L  L  S  F  I  K  Q  H  K  Y  *  I  N  S  F  R  G  K  K  *  L  Y  V  S  C  K  D   : K  M  E  M  S  G  V  V  P  </first_frame>
            <second_frame>  H  L  F  *  H  F  I  R  A  L  Q  S  L  T  N  T  *  L  L  L  S  H  L  N  K  I  G  S  L  E  E  L  Y  L  L  V  S  L  C  P  L  H  Y  G  T  L  F  R :   L  Q  F  L  R  Y  T  K  K  R  W  *  *  C  V  C  I  A  S  L  *  P  S  Y  L  H  *  Y  P  *  W  W  R  E  I  Q  M  L  G  S  Y  I  *  T  F  V  S  L  L  F  S  T  R :   V  *  L  V  *  H  L  G  V  V  *  Q  H  G  A  S  R  R  Q  I  L  S  L  F  Q  C  L  S  P  L  P  L  F  L  L  S  S  L  V  P  F  A  L  E  M  L  S  T  *  E   : V  W  W  D  Q  *  P  Q  *  L  G  F  M  L  *  C  G  E  K  L  K  K  N  T  M  R  G  T  T  *  K  H  L  L  K  I  M  S  L  C  C  K  M  R  H  K  Y  G  V  *  V  S  S  C  A  P  Q  L  I  L  C  D  I  Y  Y  L  S  L  N  N  T  N  T  E  S  I  H  F  E  E  R  N  N  C  M  L  V  V  K  I  :  R  W  K  *  V  E  W  F  H </second_frame>
            <third_frame>   I  C  F  D  I  L  *  G  P  S  N  H  *  P  T  L  N  F  Y  F  L  I  S  T  K  L  D  P  W  R  S  Y  T  C  L  *  V  Y  V  H  F  T  M  V  H  Y  S   : G  F  N  S  *  D  I  P  R  R  D  G  D  S  V  F  V  L  L  L  C  D  H  H  I  Y  I  N  I  P  S  G  G  E  K  Y  K  C  L  D  H  I  S  R  H  S  S  H  C  Y  S  L  L   : G  Y  N  W  Y  S  I  *  E  L  Y  D  N  M  V  P  Q  E  D  R  S  S  L  C  F  N  V  *  A  L  C  H  C  F  C  Y  P  H  W  Y  L  L  L  *  R  C  F  L  L  R  K  :  F  G  G  I  S  D  H  S  D  W  V  L  C  C  D  V  G  K  N  S  R  K  I  L  *  G  E  Q  L  R  N  T  C  *  K  *  C  P  S  A  A  K  *  G  I  N  T  V  F  E  S  A  R  V  R  L  N  *  F  Y  V  I  F  I  I  F  H  *  T  T  Q  I  L  N  Q  F  I  S  R  K  E  I  I  V  C  *  L  *  R  * :   D  G  N  E  W  S  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90687" stop="90544"/>
                    <exon start="90352" stop="90194"/>
                    <exon start="89907" stop="89756"/>
                    <exon start="89210" stop="89075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFVLTFYKGPPIINQHLTSTFSSQQNWILGGVILACESMSTSLWYIIQASILKIYQEEMVIVCLYCFFVTIISTLISLVVERNTNAWIIYLDIRLIAILYSGIIGIAFRSCMTTWCLKKTDPLFVSMFKPFAIVFAILIGTFCFRDAFYLGSLVGSVTTVIGFYAVMWGKTQEKYYEGNNLETLAENNVPLLQNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 220 chains have been computed
$ 
$ memory statistics:
$ 2739280 bytes spliced alignments in total
$ 140 spliced alignments have been stored
$ 19566 bytes was the average size of a spliced alignment
$ 31824 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1591 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 255 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:55:23
-->
