<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:04:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3076" ref_strand="+" ref_description="SGN-M3076 cLET-8-B23 [est_clones]">
      <seq>ttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="27380" stop="26248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27081" g_stop="26542" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-M3076" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27081" e_stop="26542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATC</genome_strand>
        <mrna_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3076" ref_strand="+" ref_description="SGN-M3076 cLET-8-B23 [est_clones]">
      <seq>ttgattattgctttaacaatctggattactttctatgatcgtgttttggtccctttgctatcaaaatatactggaaggccaagagggctaagtcctgttacccgaatgggaattgggttaacagtctcttgtatgtctatggcattgtcagcaataacagaaagcataagacgaaaaagggcaatcacagaagggcatgaggacgacccaaatgctttagtaaacatgtctgctatgtggttcgtgccacagtatgcactactcgggatagctgaggctacccatggagttggacagattgaattcttctacactctattaccgaaaagcatggccagcatcgcgtcagctatgtacactgttggaactgctgtgtcgagtttgattggaagtattctggtgagtagtgaggattggcttacatcaaggggaggtaaaacgagctggctttctagcaacattaataagggtcacctggattaccatttctggttgcttgctttaatgagttttctcaacttgttatattttctatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="31416" stop="32555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31716" g_stop="32255" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-M3076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31716" e_stop="32255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</genome_strand>
        <mrna_strand>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6695-2" ref_strand="+" ref_description="SGN-M6695-2 C2_At1g24040-2 [cosii_markers]">
      <seq>gagagaactagtctcgagtttttttttttttttttttttgccacatccaaactttcagttcagccaagcaattttcctatagtctcctttcttcttcttcttcaatggctactgcaatttctttatcattttctttagaccctcaatctcaccacaattaccataatcattttcaccataatactagcttcaattcacataaagcttcaatctttaccccaaaatatacattcccttttgtaatctcatcaaaatcacacacttcaaatctgattatcccactttcaacttcccaatcttcttcatcttcttcctcaacatcaccatcatcagtcctccaaaccccacttcaaacaggtagatttctcacaaatcaagaacttgaaaagcttgaatctttagggaaatataggtattttcaagaattggaatctgggtcattgtgggttcgtgtgatgagggaagaagagatggatgttactgtttggttgttggctgagtcttttgctgagtccatgttgatgcctaaagggtattgtgaaattcttggcatatttagtgaagcaatatatgattgagagaagagcgctgatgccccatactgctacacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13181" stop="59117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57845" g_stop="57888" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.455"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57889" i_stop="58243" i_length="355">
            <donor d_prob="0.492" d_score="0.45"/>
            <acceptor a_prob="0.698" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58244" g_stop="58817" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="614" r_length="570" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-M6695-2" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6695-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57845" e_stop="57888"/>
          <exon e_start="58244" e_stop="58817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGAATGGCAAAGTAAAATTTTTATTAGAGTTATGTAATGCATCACAAACGCCAAAGAACTATGCCACATTATCCTCTTCTATACCATAATTATATTCCATTCATAATTTGGCACAGACTTTAAAAAGTAAATAGGTTATTGAATTTGATGTATTGTCTTAAATTAAAGATATAAAATCTAATGGTTTTAAATTTGTCGCGTGAAAAAGTATGAAAGGTAGAAAATGTATCAAAGTTACAAGGGTGAAAGCAACTTGACCAGATGAAGACAAACCTTAGCTTCTTCCCCATCACTCAGATTTCAAACAAACAAATTGTAACTCTACAAAAAGACTTAAACTAATTTATAAAAATTTATAATACACTCATTTTTTGACTTTCTACATATATTAAGGCACAAATTATTCCCCTATTGCCACATCCAAACTTTCAGTTCAGCCACTCCCTTCTTCTTCTTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTA-TGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCT</genome_strand>
        <mrna_strand>GAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTGCCAC...................................................................................................................................................................................................................................................................................................................................................................ATCCAAACT-TT-CAGTTCAGCCA-A-GC-AATTTTCCTATAGTCTCCTTTCTTCTTCTTCTTCAATGGCTACTGCAATTTCTTTATCATTTTCTTTAGACCCTCAATCTCACCACAATTACCATAATCATTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACTTCCCAATCTTCTTCATCTTCTTCCTCAACATCACCATCATCAGTCCTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGGTCATTGTGGGTTCGTGTGATGAGGGAAGAAGAGATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTGCTGAGTCCATGTTGATGCCTAAAGGGTATTGTGAAATTCTTGGCATATTTAGTGAAGCAATATATGATTGAGAGAAGAGCGCTGATGCCCCATACTGCTACACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6695" ref_strand="+" ref_description="SGN-M6695 C2_At1g24040 [cosii_markers]">
      <seq>ttcaatggctgctgcaatttctttatcattttctttagaccctcaaactcaacacaattaccatcatcgttttcaccataatactagcttcaattcacataaagcttcaatctttaccccaaaatatacattcccttttgtaatctcatcaaaatcacacacttcaaatctgattatcccactttcaacatcccaatcttcttcatcttcttcctcaacatctccatcatcagtcttccaaaccccacttcaaacaggtagatttctcacaaatcaagaacttgaaaagcttgaatctttagggaaatataggtattttcaagaattggaatctggatcattgtgggttcgtgtgatgagggaagaagaaatggatgttactgtttggttgttggctgagtctttttctgattctatgttgatgcctaaagggtatgtgaaattcatggcatatttagtgaagcagtatatgattgagagaagagcactaatgccttatactgctacacttcttggattctatagagaaaatggagaagatgcagatttgcaattggctggaactgtggaagtgtgttttgacaaaaggggtgctaatgctaattctcccacacctacacctcccaagaactctccatacatttgcaatatgacagtagataagctgcttaggagaaggggcataggttggcatctgttgaaagcaagcgaggaactaatttctcaaatgagttcttctagagaggtttacttgcactgtcgaatgattgatactgctccactcaacatgtatagaaaagctggatataccattgttgagacagacaacatttttatcttgttggcattgcagcgacggaagcacttgatgtggaaagtccttccagattcagaaagcctttctgaagttgatgaatgcacttcttcagtagacacgtgaacatgtaaacatagacaagttttgaggtggattctggtcttcgatttgccaatattctacaggtttatatatccctgaaaacaatcatgttgaactttataacatgcagaagctatatgcaactctgtgaagtaatatgatgcagcacaggcaatcacaatagcgtgataaacattgctgctctattaagaagatgaaggataatgaagaggctggaaacatacaaggatttagcatatcctcagacttgcttctcctacgtttgttccacgctgacaccaaaccaaaaggcatgataactgttctttctattgattcagatgctttcttgtgtgttcaatgatgtattacatttgataagacagtaaacattgatggagaaaaggatacaagtttctaagctgtagagaaattaatgagaagaaaacaaaacaactcgaaaactactgaataattatgcattaaaacagaaaaccagctgaaggagaaagaagaatgaaaaaatagatatagaagtatattggaaagaggagatggatagagttgtatgagaatcctgttggagtatgtacaaagcaagtgagaagtttagcttatgacaagtacttgacattttaacagcttgtttggatggttgttattacctattgtattctgtttttctgtttagttttaatataacgtttgttttaactgttactctgaatcgttttttttctccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58005" stop="63613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58305" g_stop="58979" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59606" g_stop="59896" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="966" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62617" g_stop="63312" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="967" r_stop="1662" r_length="696" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1663" polyA_stop="1674"/>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-M6695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1662</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58305" e_stop="58979"/>
          <exon e_start="59606" e_stop="59896"/>
          <exon e_start="62617" e_stop="63312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAGGTATCGTTTAACTGCTCTCTCCGTTTCATGTATATTACTTTTTTTTTAGTCTGTTCAAAAGAATGTCTCTTTCCCCTTTTTTAGTCACCTCACACGTTAAACAACAAGATTCAAAATTTCTCGAAACTTTCATAAAATCCGTGCCAAGTCAAGAGTAAAGAAAGAAATTGAAATAGAGGGAGTACTTGTTTCTTGTGTTAATTCCCAATTGATATAGTATCAGTTCTCTATCTCAATCAACATATTGATGATGGGGAAAATTAGTTAATCAAGTTGAGGTAAGGTATAACGCCGAATCTGACTCTGGTGTACTATTCAACTAATTGGTTGTGGTTGACTTGTTATATGTGCTTTTTTTTTTTGGTGTGTGTGTGTCTGTATATATGTGTAATTAACTTGTCAAATATATGCCTTGAGAGTGCAGAAGTGATTTTCAAGAGTCTACATGGATTCGCAAGAGATCATTCTCTGGCTGTATATGTCCTCCTTCCCAATGTCTTTTTCTGTTTGAACTTTTGACATACTTGCATAGGAAAAGTTGATGAATGTAATGTCATTCTTATTGGAAGAGTATATGGATGATGGACTAGTATTGAGTTCCGATATTTGTTATTATCATTTTCCAGAAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAGGTACATTATTTTCCATGGTCAAGCCCTTTTTCATTCTTTAGGATCTATCTGTAGTCTATTGTACTGTGTTGTTTGTACATGTACATAATCAAACTTGATTTAGCTTTTTGTTTTCCTTTTTATAACCTGAATTGGAGCTGAAACTTATATTAAACTTTACTATTGTATTTGTGATGAACTCATGAATCATTACTCCTTAATCTTCAATAATTTGAACAAGAATGCGTCTGTTTTTACACCGGGGTGATAGCTGTCTTCAGCTTTGTGTGTGTGTATGTAGTATCATCAGAGGTTAACTTTTCCAGGGAATATAACAAACTTAAATATATCTGTTTTGAAAGCAAAGCAGCCAAGTGAAGTCTTAGTTTTCATTCTTTGATATGCGAGGATGAAACATCATAAGAAGTGGCAAATATATGTGTACATAGTCAAATCTCTGCACTAACGTGTAATCTTTGATACGTCCTTGTTTTTCTCAGACTCGTCCAGGCTATTATTAAATTATTAAGAAAATTTGAGATCTTTCGGTTGAATCTGGGTTGTGTTCTTTTATTACTTTGACAACTTACTATATCCTACCATTCTCATTGCTCTTTCCAATGTACACTTGAAACTTTTAGCTGATATTTCAACTTCTGAATTTGAAGAATGCTTCTTGGTGCATGTTGATAAGATTTTGTGTCATCCATGTCAATCTGAGAAGGTCTCAGATCATTCTGAACGTATGCATAGTCATGTTTAGCCCTTTCGCATTTGTGTGGAGGATCAGCTGAAGTTCTTTGATGCAGTCTACCATTAAGGGTCTTTCGCTACTGTCGGTTCTCACACAGCGAGATGCTAGGTTAGCAAACATGGTGATAGACTCCATTGTGTATGAGTTCCTGCTAATCTCAGGGTCAATCACCTTACGCAGCTTCTTCTTATCATTCAAAATATGTCTCACCTGCGGTATCATCAAAGAAGTGGATGTCAACTAGTGAAAAGATTTCCAAAGATATTTCATTTTTTGAACACTTCTCCTATATGATGCTTTTTTCGTCATTACCTGTAGTACTAAATTCTGATCACTTGGTCCAAGGGTGAGGTCCACAGCCCTGCGTCCGGTTAAAAGCTCCAACATAACAACACCAAATGCATAAACATCACTTTGTAAAGTGAGTTTTCCAGTCTGTTCGAAAATAATATTAGCAAGGTTTTTCTGAAAGAAATGTTAATGAAGAATAACTTTTCTCTTCTATCTATACAATATTTATATCACAAGAATAAAGGATGAGGTAAGAAATTTCTTGACAGTCATTCACATGTATGTTTGCAACAGAATTCAAGTAAAACTAGTCGTAATTCCTTCTAGCAGGTAGAACGTTAATATTATTTGTTTTGAAAGAAGAAAGAAAAGGCTGACCTATGCATATCTGTGTGTATTTACGGCAGGAAGTAGAGGAAGGGCGTTGAACATTATTTAAATTGACATTTAGCATCAGCATATATGATTACTGCTTTTGTGTAGTAACACTTTGGATAGTTTTTTTTCTCTTTATACTCTCTTCATCATTCTTGTGTTATGGCTTTGTTTCACTTGTTTCCTTTTTTCTTTGCTCACATTATTTGTTTGTCGTAATGAACTAAATAACAATATGATATCCAAATTAATAGAAACTTCAGACTTAGATTTGATATGCAAGCAACTCACCAGTGTATATTCAGGGTCAAAATAGCCGAAAGTACCAAGTACCCTAGATGTCACACATGATTGTTGCCCTTCTGGCATCAACTTTGCTAGTCCAAAATCTGATATCTGTGCAGCAGAAGAGTATTGATTATCTAGTAGGATGTGTTTCATGAGAAGGAAAACATTTCCGCTGCATGAGTATTGATTATCTATTAGGGTGTGCTTGGTATGAAGGGAAACATTTCCGAATTTTTTCCTTCATACCACACACACCCTTAGTTCTATGAAGAGATCCCCTCCTATAAAAAGATATGAAGAAAATTAGAATATATGAAATGTTGGAGTACCTTTGCATCATAATTAGTGTTCAAAAGAATATTGGTGGATTTGAAGTCCCTATGAATTATAGGAATTCCAACAGCTGAACTTGAATGCAGATATGCAAGTCCTCTTGCTGCCCCAAGAGCTACCTTTAGCCTTAAGGGCCAATCCATTTTCACTTCTGCAATCCCTGCAATTTCAGTGAGACATAGTTAGGCATCAAAAGGTAAGAGTGTTCGAATCAGGAAACTTCAGCTCGTAAACCAACCATTTAAATGATCTTGAAGGTTCCCCTTGTGCATGTACTCATAGACTAGAAATCTGTGCTTTCCATCTGCACAATAGCCTATTAGTGATACCAGATTAGGATGATCCAGTCTGCTCAGAATATCGACTTCCACACGAAACTCACGCTCGCCTTCTGCTTCCTTGAATGAAGGTAGATCCATTTTCTTTATTGCTACAATCTATCAATTGGCAAAACAATCAAAGTCTATATTAGTTGATCTGCTTTCTCAAGTTTCCAGTGTTACAGTAGATGAAAATAAACGACCAATCTGAAACTCTCTCCCTTAACTTGTTTGTCTTACCTCTCCAGACCGCAGTGTACCCTTATAAACTCGACCAAATCCTCCTTTTCCAAGTAGATTGTCATCACTAAAAGAATTTGTTGCCTCCTCCATTTCTCTGAGTGTGAAGACTGATGATCCATGGCGTCTTTTTGCTGCAGGTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</genome_strand>
        <mrna_strand>TTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8699" ref_strand="+" ref_description="SGN-M8699 C2_At5g14320 [cosii_markers]">
      <seq>aaaaatagaccagcaaaaggctctatcttcttccttcttcaatttcttcatcaatcaagattttcaacaatggcgcaaacactagcaactcctgtacttccttctctttcccttatctgcaacacatcttccatctccaagcacagttccctctctttttctactcccacatcttttccaaagactgcaggtttggttataaagtgtgtgcgtgtgggaggagtggaagttccaaacaacaaaagagttgagttctctttgcaatacattcatggaattggccgcaccactgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggaacttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggaggttgaaggagattcagtgctatagaggagtaaggcacatccaaggattgccttgcagaggacaacgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttacactctatattcctatggcaaactgtgcatttgtttgttataaacagttttttccattgaaatcatttttctacatttcaagataaggcttttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66775" stop="13195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66475" g_stop="66293" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="408" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64747" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="727" r_length="319" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63252" g_stop="63236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="744" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-M8699" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66475" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64747"/>
          <exon e_start="63252" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGATGCTTAGGCATAATCTCTTCCTTAAATCTTGTTAAATGTGTTTCATGTGGAGTAATTGCGAATTTACGTTATTCTGATTGGATGATTTGGTTGACAGGAGAAAGGTTTGTTAAGTTACGTTAGGTGTCATAATAATTGTTGATGTAACGACCTATGAAGTGCAGTCCCTATCTATGAGCCTTGGTTTAAGCTTCAAGTTCAGTAATGTGTTTGGGCCAAGTATTTGCATTAATGTGATACCAAAGTTTTACAATTTGAGTCATAGCATTGTTAATGTAATGACTCGTTAGGTCATTTTGAGAATTAACTAAAAGCATAGAGTTTGTGGCACCTTTTTGTCACATGCATGAGCATGAAAGTTAAGTCCCACCCCTTTAGTACTCAAGAAGGTTCACTTTTCTCAGGTTTCTTGAAGACCATGACTTCTGTTTTTCAATAGTGATGATGTTCAGATCAATTTACACGTATTTCACTACTTACTTGTTACCTCACACTAGCATTATTGACGACGATGTAGTCTCTATCATTTTCAATATTATCGCGACCCCAGAAGAACCTTCTAAGTTATCTTTTCTAAGGTTTCTGGAAGATTGTGCATTTAACTTGAAGAAAATCTTTGGTAGAGTTTTTCATTTTCAAGATTATCTTTGTATAACTAGTAAAGTTATTGACTTATTGTAATGTAACTACGAGGTCACGATTTTAAACTAACAAATTTGAATAGTTTAGGGAGAATTTGATGTATCAAGTCTTGCAAAATTAAGTTAGAATTAATGTTTCGAATTTTACAACTGAGACAACCTTTATCGATTCTAAGTACATAAAACTAAAACTGAATAAATAAATAAAAAGAATATACCAAGCATTCCAAAGTTTGCAACTTTTTTGTATGTAATATTTTCATTTCATACCTTCAACACATACTAATATTTCACCAGCCATAACTATAAGAAGAAAAATATACCAACAATACAAAATATGGATTTATGAACACTAAGTGTTACATCAATAGAACAGTAAAAACCAGAATTTTCAGGCAAAAAAATTATAGAAATCCAAGAAAATGACATCCCAACAAGAGCATTTTGCAAATTAAAGAGAATTTTATGTTTAAATTGCAGCTCCTATTTCCTTTTCAAGGCACACCCACCCACCTCACCCCACTTGATCATTTGAAGGTAAGCAACTTATTGTTCCATCTCTTGCTTTTTCTTACCCTTCAAGTGATGAGCCTTAAGTTGTTGAGTGATAACAGTGCTTACATTGTTTGGATGGTTGTTACGTATTGTTCTATAGCCTATCGTACTGTATTATTTTAACAAATACAATGTTTGGAGCGACCAGACCAGACCGTTTTCCGTTGCTACATGACAGGAAAGAACTTAAGGATAAAATAGAATTTTAAAATAGTAAGTAAAGACAAACAAATTGGAGAAAAAAAACGATTCAGAGTAACAGTTAAAACAAACGTTATATTAAAACTAAACAGAAAAACAGAATACAATA</genome_strand>
        <mrna_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAG-GCTTTTCAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8699-2" ref_strand="+" ref_description="SGN-M8699-2 C2_At5g14320-2 [cosii_markers]">
      <seq>gaaaataagccaggaaaaggctctatcttcttccttctcctttcgtttcttcatcaatcaagaatttcaacaatggcgcaaactctagcaactcctgtactaccttcactctcccttatctgcaacacatcttccatctccaagcacagttccctctctttttccactcccacatcttttccaaagactggaggtttggttataaagtgtgtgcgtgtgggaggagtggaggttccaaacaacaaaagggttgagttctctctgcaatacattcatggaattggccgcaccgctgcacgccagattctggtagaccttcaaatggagaacaaagtgatgaaagacatgtcggaagaggagcttatcactcttcgtgaagaagtctctaagtacatgattgaaggagaccttaggagattcaatgctcttgccattaggagattgaaggaaattcagtgctacagaggagtaaggcacatccaaggattgccttgcagaggacagcgaacaaagaacaattgccgtactttgaagggcaagaaagtagcaattgcagggaagaagaaggcacctcgttaaatcaagatcgatttttcatttcttttggtaactaacttgtaaaagttataccctatattcctatggcaaactgtgcatttgtttgttacgaacagtatttccattgaaatcatttttctacatttcaagatacgagcttttcaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="-" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="66774" stop="64448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66475" g_stop="66293" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65905" g_stop="65681" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="411" r_length="225" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65066" g_stop="64742" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="735" r_length="324" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="-" ref_id="SGN-M8699-2" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8699-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66475" e_stop="66293"/>
          <exon e_start="65905" e_stop="65681"/>
          <exon e_start="65066" e_stop="64742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCT---TCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAGGTACACTTCACTCCCTTCTCTTGAAATTTGCAGTAATCAAACATGGAGTTTGCTGAAGTTTACATTTTTTGACCTTTTTCGTGTAGGAATTGGAATGGGGTTTGTCTTTTTTTTTCTCGCAATTTTCTCAGTAACCAAACATGGGTTTTGCTAAAGATTACTTTTTTTTTTACCTGAGTAGGAATTGGAATGAGTTTTTGGATTTTTCGAAATTTTCTCAGTAACCCAACATGAGTTTTTTTTGCTAAAGTTTCCGTTTTTTTGAGGTGGGATTGAATTGAGGTTTGCTTATTTTTCATATTTTTGGACTTTTTTGAGTTGGAATTAAATTGGGTTTTGCTAAATTTTCCATGATTTTGAGTTTGAACTGAAATGAGTTTTGTGTAGACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTTGTGAGTTTCATTGCTCTAATTTGTACTCATTTGTTTTCGTTCCAATGTGCATATCCTTATTGAAACTTATATGCTTAGGTAATTTGATTTCGATATCTAGTTCATGTAACTTTGCTGTGGTTGCTGTTTATTTTAGCTCTATAGTTTAACTTAATGCCATTTGGGGTTCTAAGAAATTTAATTCATTTTGTCTCAAGATAGGAATTGAACCAAAAAAACAATATCTTAAACCAATCTTTGGTCCAACTTTTACATGGAAAGAACCATATTTGAGCTGAAACTGCATTCTACATATCTTGAGATTAAAACCAGAAGATCGAAAAATCTTCTTTACTTTCTTAAACTTTGTGTCAAGTCAAATCCGGACAAACAAATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAACAGTTCTTATGGAAATGTATTTCAGAAGAAATCGATAGCTTGTTTAGCAATTGGCAATGTTGATTGAGATTCTTGTGTATAAGGTTGTTTGTTTGATTGATGCTTCGGCTTCCTATTTGAAACGGGAAAATTGATTACATACTTGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGA</genome_strand>
        <mrna_strand>GAAAATAAGCCAGGAAAAGGCTCTATCTTCTTCCTTCTCCTTTCGTTTCTTCATCAATCAAGAATTTCAACAATGGCGCAAACTCTAGCAACTCCTGTACTACCTTCACTCTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCCACTCCCACATCTTTTCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAGGTTCCAAACAACAAAAGGGTTGAGTTCTCTCTGCAATACATTCATGGAATTGGCCGCACCGCTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAGCTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTCAATGCTCTTGCCATTAGGAGATTGAAGGAAATTCAGTGCTACAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAGCGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTATACCCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTACGAACAG-TATTTCCATTGAAATCATTTTTCTACATTTCAAGATACGAGCTTTTCAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6694-2" ref_strand="+" ref_description="SGN-M6694-2 C2_At1g24020-2 [cosii_markers]">
      <seq>aatattgtaatctctcaatttaaaaaaaatgtcatccaatttaggaaaaattgatgttgaagttgaggtgaaaagtccagttgacaaattttggaatggcattagggactcaataaatttgttccccaaggcttcacctaatgaatacaagagcattgaagttgttgaaggtgatggcaagtctgttggttctgttctattgatcaaatatactgaaggtaatgttcatgcattgtttcctcatgttttaattaatttacgtgtcgtaacagataacttatttattttacagatttcaaattctcattttttatggatggtttgtcggttacttgatcactatactacaaaaaaaatggtcattagcaataaaaactaatccaaaaaaacgtattttctaatttaatatcaaaagacttaaattttctatatctaaattcactattaaatattagaagtaacgaatctcaaaattctgactatgccacatagattataaaagtttagaagtacaaatctcaaaattctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0042B19-uY1ou/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0042B19.1" temp_strand="+" temp_description="C05HBa0042B19.1  AC188778.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0042B19, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="68121" stop="69253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68421" g_stop="68953" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0042B19.1" gen_strand="+" ref_id="SGN-M6694-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0042B19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6694-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68421" e_stop="68953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAA</genome_strand>
        <mrna_strand>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27081" PGL_stop="26542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27081" e_stop="26542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="27081" e_stop="26542" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27081" stop="26542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATTATCGCTTTAACAATGTGGATTATTTTCTATGATCGTCTTTTGGTCCCTTTGCTATCTAAATATACTGGAAGTCCAAGAGGGCTAAGTCCTGTTACCCGAATGAGAATTGGGTTAACAGTCTCTTGTATGTCAATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGATCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGTATAGCTACGGCTACACATGGAGTTGGACAAATTGAGTTCTTCTACACTCTATTACCGAAAAGCATGGCAAGCATCGCGTCTGCTATAGACACTGTTGGGAATGCAGCGTCGAGTTTGATTGGAAGTTTTCTTGTGAGTAGTGAGGATTGGCTTACATCAACAGGAGGTAAAACAAGCTGGCTTTCTAGCAACATTAATAAAGGTCACCTGGATTACCATTTCTGGCTGCTTACTTTTTTGAGTTTGCTCAACTTGTTATATTTTCATTTCATC</gDNA_template>
            <first_frame> L  I  I  A  L  T  M  W  I  I  F  Y  D  R  L  L  V  P  L  L  S  K  Y  T  G  S  P  R  G  L  S  P  V  T  R  M  R  I  G  L  T  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  R  K  R  A  I  T  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  I  A  T  A  T  H  G  V  G  Q  I  E  F  F  Y  T  L  L  P  K  S  M  A  S  I  A  S  A  I  D  T  V  G  N  A  A  S  S  L  I  G  S  F  L  V  S  S  E  D  W  L  T  S  T  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  H  F  W  L  L  T  F  L  S  L  L  N  L  L  Y  F  H  F  I </first_frame>
            <second_frame>  *  L  S  L  *  Q  C  G  L  F  S  M  I  V  F  W  S  L  C  Y  L  N  I  L  E  V  Q  E  G  *  V  L  L  P  E  *  E  L  G  *  Q  S  L  V  C  Q  W  H  C  Q  Q  *  Q  K  A  *  D  E  K  G  Q  S  Q  K  G  M  R  T  I  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y  S  V  *  L  R  L  H  M  E  L  D  K  L  S  S  S  T  L  Y  Y  R  K  A  W  Q  A  S  R  L  L  *  T  L  L  G  M  Q  R  R  V  *  L  E  V  F  L  *  V  V  R  I  G  L  H  Q  Q  E  V  K  Q  A  G  F  L  A  T  L  I  K  V  T  W  I  T  I  S  G  C  L  L  F  *  V  C  S  T  C  Y  I  F  I  S   </second_frame>
            <third_frame>   D  Y  R  F  N  N  V  D  Y  F  L  *  S  S  F  G  P  F  A  I  *  I  Y  W  K  S  K  R  A  K  S  C  Y  P  N  E  N  W  V  N  S  L  L  Y  V  N  G  I  V  S  N  N  R  K  H  K  T  K  K  G  N  H  R  R  A  *  G  R  S  K  C  F  S  K  H  V  C  Y  V  V  R  A  T  V  C  T  T  R  Y  S  Y  G  Y  T  W  S  W  T  N  *  V  L  L  H  S  I  T  E  K  H  G  K  H  R  V  C  Y  R  H  C  W  E  C  S  V  E  F  D  W  K  F  S  C  E  *  *  G  L  A  Y  I  N  R  R  *  N  K  L  A  F  *  Q  H  *  *  R  S  P  G  L  P  F  L  A  A  Y  F  F  E  F  A  Q  L  V  I  F  S  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27081" stop="26542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIALTMWIIFYDRLLVPLLSKYTGSPRGLSPVTRMRIGLTVSCMSMALSAITESIRRKRAITEGHEDDPNALVNMSAMWFVPQYALLGIATATHGVGQIEFFYTLLPKSMASIASAIDTVGNAASSLIGSFLVSSEDWLTSTGGKTSWLSSNINKGHLDYHFWLLTFLSLLNLLYFHFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31716" PGL_stop="32255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31716" e_stop="32255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31716" e_stop="32255" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31716" stop="32255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTATTGCTTTAACAATCTGGATTACTTTCTATGATCGTGTTTTGGTCCCTTTGCTATCAAAATATACTGGAAGGCCAAGAGGGCTAAGTCCTGTTACCCGAATGGGAATTGGGTTAACAGTCTCTTGTATGTCTATGGCATTGTCAGCAATAACAGAAAGCATAAGACGAAAAAGGGCAATCACAGAAGGGCATGAGGACGACCCAAATGCTTTAGTAAACATGTCTGCTATGTGGTTCGTGCCACAGTATGCACTACTCGGGATAGCTGAGGCTACCCATGGAGTTGGACAGATTGAATTCTTCTACACTCTATTACCGAAAAGCATGGCCAGCATCGCGTCAGCTATGTACACTGTTGGAACTGCTGTGTCGAGTTTGATTGGAAGTATTCTGGTGAGTAGTGAGGATTGGCTTACATCAAGGGGAGGTAAAACGAGCTGGCTTTCTAGCAACATTAATAAGGGTCACCTGGATTACCATTTCTGGTTGCTTGCTTTAATGAGTTTTCTCAACTTGTTATATTTTCTATGGGTC</gDNA_template>
            <first_frame> L  I  I  A  L  T  I  W  I  T  F  Y  D  R  V  L  V  P  L  L  S  K  Y  T  G  R  P  R  G  L  S  P  V  T  R  M  G  I  G  L  T  V  S  C  M  S  M  A  L  S  A  I  T  E  S  I  R  R  K  R  A  I  T  E  G  H  E  D  D  P  N  A  L  V  N  M  S  A  M  W  F  V  P  Q  Y  A  L  L  G  I  A  E  A  T  H  G  V  G  Q  I  E  F  F  Y  T  L  L  P  K  S  M  A  S  I  A  S  A  M  Y  T  V  G  T  A  V  S  S  L  I  G  S  I  L  V  S  S  E  D  W  L  T  S  R  G  G  K  T  S  W  L  S  S  N  I  N  K  G  H  L  D  Y  H  F  W  L  L  A  L  M  S  F  L  N  L  L  Y  F  L  W  V </first_frame>
            <second_frame>  *  L  L  L  *  Q  S  G  L  L  S  M  I  V  F  W  S  L  C  Y  Q  N  I  L  E  G  Q  E  G  *  V  L  L  P  E  W  E  L  G  *  Q  S  L  V  C  L  W  H  C  Q  Q  *  Q  K  A  *  D  E  K  G  Q  S  Q  K  G  M  R  T  T  Q  M  L  *  *  T  C  L  L  C  G  S  C  H  S  M  H  Y  S  G  *  L  R  L  P  M  E  L  D  R  L  N  S  S  T  L  Y  Y  R  K  A  W  P  A  S  R  Q  L  C  T  L  L  E  L  L  C  R  V  *  L  E  V  F  W  *  V  V  R  I  G  L  H  Q  G  E  V  K  R  A  G  F  L  A  T  L  I  R  V  T  W  I  T  I  S  G  C  L  L  *  *  V  F  S  T  C  Y  I  F  Y  G   </second_frame>
            <third_frame>   D  Y  C  F  N  N  L  D  Y  F  L  *  S  C  F  G  P  F  A  I  K  I  Y  W  K  A  K  R  A  K  S  C  Y  P  N  G  N  W  V  N  S  L  L  Y  V  Y  G  I  V  S  N  N  R  K  H  K  T  K  K  G  N  H  R  R  A  *  G  R  P  K  C  F  S  K  H  V  C  Y  V  V  R  A  T  V  C  T  T  R  D  S  *  G  Y  P  W  S  W  T  D  *  I  L  L  H  S  I  T  E  K  H  G  Q  H  R  V  S  Y  V  H  C  W  N  C  C  V  E  F  D  W  K  Y  S  G  E  *  *  G  L  A  Y  I  K  G  R  *  N  E  L  A  F  *  Q  H  *  *  G  S  P  G  L  P  F  L  V  A  C  F  N  E  F  S  Q  L  V  I  F  S  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31716" stop="32255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIALTIWITFYDRVLVPLLSKYTGRPRGLSPVTRMGIGLTVSCMSMALSAITESIRRKRAITEGHEDDPNALVNMSAMWFVPQYALLGIAEATHGVGQIEFFYTLLPKSMASIASAMYTVGTAVSSLIGSILVSSEDWLTSRGGKTSWLSSNINKGHLDYHFWLLALMSFLNLLYFLWV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="57845" PGL_stop="63312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57845" e_stop="57888"/>
            <exon e_start="58244" e_stop="58979"/>
            <exon e_start="59606" e_stop="59896"/>
            <exon e_start="62617" e_stop="63312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.492" acc_prob="0.698" e_score="0.455"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.455">
            <gDNA_exon_boundary e_start="57845" e_stop="57888" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.492" acc_prob="0.698">
            <gDNA_intron_boundary i_start="57889" i_stop="58243" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58244" e_stop="58979" e_length="736"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="58980" i_stop="59605" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59606" e_stop="59896" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.969">
            <gDNA_intron_boundary i_start="59897" i_stop="62616" i_length="2720"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62617" e_stop="63312" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57845" stop="57888"/>
              <exon start="58244" stop="58817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6695-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58305" stop="58979"/>
              <exon start="59606" stop="59896"/>
              <exon start="62617" stop="63312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATGAGAATGGCAAAGTAAAATTTTTATTAGAGTTATGTAAT : GCACAAATTATTCCCCTATTGCCACATCCAAACTTTCAGTTCAGCCACTCCCTTCTTCTTCTTCAATGGCTGCTGCAATTTCTTTATCATTTTCTTTAGACCCTCAAACTCAACACAATTACCATCATCGTTTTCACCATAATACTAGCTTCAATTCACATAAAGCTTCAATCTTTACCCCAAAATATACATTCCCTTTTGTAATCTCATCAAAATCACACACTTCAAATCTGATTATCCCACTTTCAACATCCCAATCTTCTTCATCTTCTTCCTCAACATCTCCATCATCAGTCTTCCAAACCCCACTTCAAACAGGTAGATTTCTCACAAATCAAGAACTTGAAAAGCTTGAATCTTTAGGGAAATATAGGTATTTTCAAGAATTGGAATCTGGATCATTGTGGGTTCGTGTGATGAGGGAAGAAGAAATGGATGTTACTGTTTGGTTGTTGGCTGAGTCTTTTTCTGATTCTATGTTGATGCCTAAAGGGTATGTGAAATTCATGGCATATTTAGTGAAGCAGTATATGATTGAGAGAAGAGCACTAATGCCTTATACTGCTACACTTCTTGGATTCTATAGAGAAAATGGAGAAGATGCAGATTTGCAATTGGCTGGAACTGTGGAAGTGTGTTTTGACAAAAGGGGTGCTAATGCTAATTCTCCCACACCTACACCTCCCAAGAACTCTCCATACATTTGCAATATGACAGTAGATAAGCTGCTTAGGAG : AAGGGGCATAGGTTGGCATCTGTTGAAAGCAAGCGAGGAACTAATTTCTCAAATGAGTTCTTCTAGAGAGGTTTACTTGCACTGTCGAATGATTGATACTGCTCCACTCAACATGTATAGAAAAGCTGGATATACCATTGTTGAGACAGACAACATTTTTATCTTGTTGGCATTGCAGCGACGGAAGCACTTGATGTGGAAAGTCCTTCCAGATTCAGAAAGCCTTTCTGAAGTTGATGAATGCACTTCTTCAGTAGACACGTGAACATGTAAACATAGACAAGTTTTGAG : GTGGATTCTGGTCTTCGATTTGCCAATATTCTACAGGTTTATATATCCCTGAAAACAATCATGTTGAACTTTATAACATGCAGAAGCTATATGCAACTCTGTGAAGTAATATGATGCAGCACAGGCAATCACAATAGCGTGATAAACATTGCTGCTCTATTAAGAAGATGAAGGATAATGAAGAGGCTGGAAACATACAAGGATTTAGCATATCCTCAGACTTGCTTCTCCTACGTTTGTTCCACGCTGACACCAAACCAAAAGGCATGATAACTGTTCTTTCTATTGATTCAGATGCTTTCTTGTGTGTTCAATGATGTATTACATTTGATAAGACAGTAAACATTGATGGAGAAAAGGATACAAGTTTCTAAGCTGTAGAGAAATTAATGAGAAGAAAACAAAACAACTCGAAAACTACTGAATAATTATGCATTAAAACAGAAAACCAGCTGAAGGAGAAAGAAGAATGAAAAAATAGATATAGAAGTATATTGGAAAGAGGAGATGGATAGAGTTGTATGAGAATCCTGTTGGAGTATGTACAAAGCAAGTGAGAAGTTTAGCTTATGACAAGTACTTGACATTTTAACAGCTTGTTTGGATGGTTGTTATTACCTATTGTATTCTGTTTTTCTGTTTAGTTTTAATATAACGTTTGTTTTAACTGTTACTCTGAATCGTTTTTTTTCTCCA</gDNA_template>
            <first_frame> V  M  R  M  A  K  *  N  F  Y  *  S  Y  V  M :   H  K  L  F  P  Y  C  H  I  Q  T  F  S  S  A  T  P  F  F  F  F  N  G  C  C  N  F  F  I  I  F  F  R  P  S  N  S  T  Q  L  P  S  S  F  S  P  *  Y  *  L  Q  F  T  *  S  F  N  L  Y  P  K  I  Y  I  P  F  C  N  L  I  K  I  T  H  F  K  S  D  Y  P  T  F  N  I  P  I  F  F  I  F  F  L  N  I  S  I  I  S  L  P  N  P  T  S  N  R  *  I  S  H  K  S  R  T  *  K  A  *  I  F  R  E  I  *  V  F  S  R  I  G  I  W  I  I  V  G  S  C  D  E  G  R  R  N  G  C  Y  C  L  V  V  G  *  V  F  F  *  F  Y  V  D  A  *  R  V  C  E  I  H  G  I  F  S  E  A  V  Y  D  *  E  K  S  T  N  A  L  Y  C  Y  T  S  W  I  L  *  R  K  W  R  R  C  R  F  A  I  G  W  N  C  G  S  V  F  *  Q  K  G  C  *  C  *  F  S  H  T  Y  T  S  Q  E  L  S  I  H  L  Q  Y  D  S  R  *  A  A  *  E  :  K  G  H  R  L  A  S  V  E  S  K  R  G  T  N  F  S  N  E  F  F  *  R  G  L  L  A  L  S  N  D  *  Y  C  S  T  Q  H  V  *  K  S  W  I  Y  H  C  *  D  R  Q  H  F  Y  L  V  G  I  A  A  T  E  A  L  D  V  E  S  P  S  R  F  R  K  P  F  *  S  *  *  M  H  F  F  S  R  H  V  N  M  *  T  *  T  S  F  E  :  V  D  S  G  L  R  F  A  N  I  L  Q  V  Y  I  S  L  K  T  I  M  L  N  F  I  T  C  R  S  Y  M  Q  L  C  E  V  I  *  C  S  T  G  N  H  N  S  V  I  N  I  A  A  L  L  R  R  *  R  I  M  K  R  L  E  T  Y  K  D  L  A  Y  P  Q  T  C  F  S  Y  V  C  S  T  L  T  P  N  Q  K  A  *  *  L  F  F  L  L  I  Q  M  L  S  C  V  F  N  D  V  L  H  L  I  R  Q  *  T  L  M  E  K  R  I  Q  V  S  K  L  *  R  N  *  *  E  E  N  K  T  T  R  K  L  L  N  N  Y  A  L  K  Q  K  T  S  *  R  R  K  K  N  E  K  I  D  I  E  V  Y  W  K  E  E  M  D  R  V  V  *  E  S  C  W  S  M  Y  K  A  S  E  K  F  S  L  *  Q  V  L  D  I  L  T  A  C  L  D  G  C  Y  Y  L  L  Y  S  V  F  L  F  S  F  N  I  T  F  V  L  T  V  T  L  N  R  F  F  S  P </first_frame>
            <second_frame>  *  *  E  W  Q  S  K  I  F  I  R  V  M  *   : C  T  N  Y  S  P  I  A  T  S  K  L  S  V  Q  P  L  P  S  S  S  S  M  A  A  A  I  S  L  S  F  S  L  D  P  Q  T  Q  H  N  Y  H  H  R  F  H  H  N  T  S  F  N  S  H  K  A  S  I  F  T  P  K  Y  T  F  P  F  V  I  S  S  K  S  H  T  S  N  L  I  I  P  L  S  T  S  Q  S  S  S  S  S  S  S  T  S  P  S  S  V  F  Q  T  P  L  Q  T  G  R  F  L  T  N  Q  E  L  E  K  L  E  S  L  G  K  Y  R  Y  F  Q  E  L  E  S  G  S  L  W  V  R  V  M  R  E  E  E  M  D  V  T  V  W  L  L  A  E  S  F  S  D  S  M  L  M  P  K  G  Y  V  K  F  M  A  Y  L  V  K  Q  Y  M  I  E  R  R  A  L  M  P  Y  T  A  T  L  L  G  F  Y  R  E  N  G  E  D  A  D  L  Q  L  A  G  T  V  E  V  C  F  D  K  R  G  A  N  A  N  S  P  T  P  T  P  P  K  N  S  P  Y  I  C  N  M  T  V  D  K  L  L  R  R :   R  G  I  G  W  H  L  L  K  A  S  E  E  L  I  S  Q  M  S  S  S  R  E  V  Y  L  H  C  R  M  I  D  T  A  P  L  N  M  Y  R  K  A  G  Y  T  I  V  E  T  D  N  I  F  I  L  L  A  L  Q  R  R  K  H  L  M  W  K  V  L  P  D  S  E  S  L  S  E  V  D  E  C  T  S  S  V  D  T  *  T  C  K  H  R  Q  V  L  R :   W  I  L  V  F  D  L  P  I  F  Y  R  F  I  Y  P  *  K  Q  S  C  *  T  L  *  H  A  E  A  I  C  N  S  V  K  *  Y  D  A  A  Q  A  I  T  I  A  *  *  T  L  L  L  Y  *  E  D  E  G  *  *  R  G  W  K  H  T  R  I  *  H  I  L  R  L  A  S  P  T  F  V  P  R  *  H  Q  T  K  R  H  D  N  C  S  F  Y  *  F  R  C  F  L  V  C  S  M  M  Y  Y  I  *  *  D  S  K  H  *  W  R  K  G  Y  K  F  L  S  C  R  E  I  N  E  K  K  T  K  Q  L  E  N  Y  *  I  I  M  H  *  N  R  K  P  A  E  G  E  R  R  M  K  K  *  I  *  K  Y  I  G  K  R  R  W  I  E  L  Y  E  N  P  V  G  V  C  T  K  Q  V  R  S  L  A  Y  D  K  Y  L  T  F  *  Q  L  V  W  M  V  V  I  T  Y  C  I  L  F  F  C  L  V  L  I  *  R  L  F  *  L  L  L  *  I  V  F  F  L   </second_frame>
            <third_frame>   D  E  N  G  K  V  K  F  L  L  E  L  C  N  :  A  Q  I  I  P  L  L  P  H  P  N  F  Q  F  S  H  S  L  L  L  L  Q  W  L  L  Q  F  L  Y  H  F  L  *  T  L  K  L  N  T  I  T  I  I  V  F  T  I  I  L  A  S  I  H  I  K  L  Q  S  L  P  Q  N  I  H  S  L  L  *  S  H  Q  N  H  T  L  Q  I  *  L  S  H  F  Q  H  P  N  L  L  H  L  L  P  Q  H  L  H  H  Q  S  S  K  P  H  F  K  Q  V  D  F  S  Q  I  K  N  L  K  S  L  N  L  *  G  N  I  G  I  F  K  N  W  N  L  D  H  C  G  F  V  *  *  G  K  K  K  W  M  L  L  F  G  C  W  L  S  L  F  L  I  L  C  *  C  L  K  G  M  *  N  S  W  H  I  *  *  S  S  I  *  L  R  E  E  H  *  C  L  I  L  L  H  F  L  D  S  I  E  K  M  E  K  M  Q  I  C  N  W  L  E  L  W  K  C  V  L  T  K  G  V  L  M  L  I  L  P  H  L  H  L  P  R  T  L  H  T  F  A  I  *  Q  *  I  S  C  L  G   : E  G  A  *  V  G  I  C  *  K  Q  A  R  N  *  F  L  K  *  V  L  L  E  R  F  T  C  T  V  E  *  L  I  L  L  H  S  T  C  I  E  K  L  D  I  P  L  L  R  Q  T  T  F  L  S  C  W  H  C  S  D  G  S  T  *  C  G  K  S  F  Q  I  Q  K  A  F  L  K  L  M  N  A  L  L  Q  *  T  R  E  H  V  N  I  D  K  F  *   : G  G  F  W  S  S  I  C  Q  Y  S  T  G  L  Y  I  P  E  N  N  H  V  E  L  Y  N  M  Q  K  L  Y  A  T  L  *  S  N  M  M  Q  H  R  Q  S  Q  *  R  D  K  H  C  C  S  I  K  K  M  K  D  N  E  E  A  G  N  I  Q  G  F  S  I  S  S  D  L  L  L  L  R  L  F  H  A  D  T  K  P  K  G  M  I  T  V  L  S  I  D  S  D  A  F  L  C  V  Q  *  C  I  T  F  D  K  T  V  N  I  D  G  E  K  D  T  S  F  *  A  V  E  K  L  M  R  R  K  Q  N  N  S  K  T  T  E  *  L  C  I  K  T  E  N  Q  L  K  E  K  E  E  *  K  N  R  Y  R  S  I  L  E  R  G  D  G  *  S  C  M  R  I  L  L  E  Y  V  Q  S  K  *  E  V  *  L  M  T  S  T  *  H  F  N  S  L  F  G  W  L  L  L  P  I  V  F  C  F  S  V  *  F  *  Y  N  V  C  F  N  C  Y  S  E  S  F  F  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57888" stop="58979"/>
                    <exon start="59606" stop="59870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTNYSPIATSKLSVQPLPSSSSMAAAISLSFSLDPQTQHNYHHRFHHNTSFNSHKASIFTPKYTFPFVISSKSHTSNLIIPLSTSQSSSSSSSTSPSSVFQTPLQTGRFLTNQELEKLESLGKYRYFQELESGSLWVRVMREEEMDVTVWLLAESFSDSMLMPKGYVKFMAYLVKQYMIERRALMPYTATLLGFYRENGEDADLQLAGTVEVCFDKRGANANSPTPTPPKNSPYICNMTVDKLLRRRGIGWHLLKASEELISQMSSSREVYLHCRMIDTAPLNMYRKAGYTIVETDNIFILLALQRRKHLMWKVLPDSESLSEVDECTSSVDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="66475" PGL_stop="63236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66475" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64747"/>
            <exon e_start="63252" e_stop="63236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.988"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66475" e_stop="66293" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="65066" e_stop="64747" e_length="320"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="64746" i_stop="63253" i_length="1494"/>
          </intron>
          <exon e_serial="4" e_score="0.706">
            <gDNA_exon_boundary e_start="63252" e_stop="63236" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64747"/>
              <exon start="63252" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAAT : AAAAACAGAATACAATA</gDNA_template>
            <first_frame> K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K  S  F  S  R  R  I :   K  T  E  Y  N  </first_frame>
            <second_frame>  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  A  F  Q  E  E   : *  K  Q  N  T  I </second_frame>
            <third_frame>   K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E  L  F  K  K  N  :  K  N  R  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66475" e_stop="66293"/>
            <exon e_start="65905" e_stop="65681"/>
            <exon e_start="65066" e_stop="64742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.896"/>
          <exon-intron don_prob="0.993" acc_prob="0.888" e_score="0.973"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="66475" e_stop="66293" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66292" i_stop="65906" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="65905" e_stop="65681" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.888">
            <gDNA_intron_boundary i_start="65680" i_stop="65067" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="65066" e_stop="64742" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66475" stop="66293"/>
              <exon start="65905" stop="65681"/>
              <exon start="65066" stop="64742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8699-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAGACCAGCAAAAGGCTCTATCTTCTTCCTTCTTCAATTTCTTCATCAATCAAGATTTTCAACAATGGCGCAAACACTAGCAACTCCTGTACTTCCTTCTCTTTCCCTTATCTGCAACACATCTTCCATCTCCAAGCACAGTTCCCTCTCTTTTTCTACTCCCACATCTTTTCCAAAG : ACTGCAGGTTTGGTTATAAAGTGTGTGCGTGTGGGAGGAGTGGAAGTTCCAAACAACAAAAGAGTTGAGTTCTCTTTGCAATACATTCATGGAATTGGCCGCACCACTGCACGCCAGATTCTGGTAGACCTTCAAATGGAGAACAAAGTGATGAAAGACATGTCGGAAGAGGAACTTATCACTCTTCGTGAAGAAGTCTCTAAGTACATGATTGAAGGAGACCTT : AGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTGCAGAGGACAACGAACAAAGAACAATTGCCGTACTTTGAAGGGCAAGAAAGTAGCAATTGCAGGGAAGAAGAAGGCACCTCGTTAAATCAAGATCGATTTTTCATTTCTTTTGGTAACTAACTTGTAAAAGTTACACTCTATATTCCTATGGCAAACTGTGCATTTGTTTGTTATAAACAGTTTTTTCCATTGAAATCATTTTTCTACATTTCAAGATAAGAGCTTTTCAAGAAGAATGTTGA</gDNA_template>
            <first_frame> K  N  R  P  A  K  G  S  I  F  F  L  L  Q  F  L  H  Q  S  R  F  S  T  M  A  Q  T  L  A  T  P  V  L  P  S  L  S  L  I  C  N  T  S  S  I  S  K  H  S  S  L  S  F  S  T  P  T  S  F  P  K  :  T  A  G  L  V  I  K  C  V  R  V  G  G  V  E  V  P  N  N  K  R  V  E  F  S  L  Q  Y  I  H  G  I  G  R  T  T  A  R  Q  I  L  V  D  L  Q  M  E  N  K  V  M  K  D  M  S  E  E  E  L  I  T  L  R  E  E  V  S  K  Y  M  I  E  G  D  L  :  R  R  F  N  A  L  A  I  R  R  L  K  E  I  Q  C  Y  R  G  V  R  H  I  Q  G  L  P  C  R  G  Q  R  T  K  N  N  C  R  T  L  K  G  K  K  V  A  I  A  G  K  K  K  A  P  R  *  I  K  I  D  F  S  F  L  L  V  T  N  L  *  K  L  H  S  I  F  L  W  Q  T  V  H  L  F  V  I  N  S  F  F  H  *  N  H  F  S  T  F  Q  D  K  S  F  S  R  R  M  L  </first_frame>
            <second_frame>  K  I  D  Q  Q  K  A  L  S  S  S  F  F  N  F  F  I  N  Q  D  F  Q  Q  W  R  K  H  *  Q  L  L  Y  F  L  L  F  P  L  S  A  T  H  L  P  S  P  S  T  V  P  S  L  F  L  L  P  H  L  F  Q  R :   L  Q  V  W  L  *  S  V  C  V  W  E  E  W  K  F  Q  T  T  K  E  L  S  S  L  C  N  T  F  M  E  L  A  A  P  L  H  A  R  F  W  *  T  F  K  W  R  T  K  *  *  K  T  C  R  K  R  N  L  S  L  F  V  K  K  S  L  S  T  *  L  K  E  T  L :   G  D  S  M  L  L  P  L  G  G  *  R  R  F  S  A  I  E  E  *  G  T  S  K  D  C  L  A  E  D  N  E  Q  R  T  I  A  V  L  *  R  A  R  K  *  Q  L  Q  G  R  R  R  H  L  V  K  S  R  S  I  F  H  F  F  W  *  L  T  C  K  S  Y  T  L  Y  S  Y  G  K  L  C  I  C  L  L  *  T  V  F  S  I  E  I  I  F  L  H  F  K  I  R  A  F  Q  E  E  C  * </second_frame>
            <third_frame>   K  *  T  S  K  R  L  Y  L  L  P  S  S  I  S  S  S  I  K  I  F  N  N  G  A  N  T  S  N  S  C  T  S  F  S  F  P  Y  L  Q  H  I  F  H  L  Q  A  Q  F  P  L  F  F  Y  S  H  I  F  S  K   : D  C  R  F  G  Y  K  V  C  A  C  G  R  S  G  S  S  K  Q  Q  K  S  *  V  L  F  A  I  H  S  W  N  W  P  H  H  C  T  P  D  S  G  R  P  S  N  G  E  Q  S  D  E  R  H  V  G  R  G  T  Y  H  S  S  *  R  S  L  *  V  H  D  *  R  R  P   : *  E  I  Q  C  S  C  H  *  E  V  E  G  D  S  V  L  *  R  S  K  A  H  P  R  I  A  L  Q  R  T  T  N  K  E  Q  L  P  Y  F  E  G  Q  E  S  S  N  C  R  E  E  E  G  T  S  L  N  Q  D  R  F  F  I  S  F  G  N  *  L  V  K  V  T  L  Y  I  P  M  A  N  C  A  F  V  C  Y  K  Q  F  F  P  L  K  S  F  F  Y  I  S  R  *  E  L  F  K  K  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66475" stop="66293"/>
                    <exon start="65905" stop="65681"/>
                    <exon start="65066" stop="64899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRPAKGSIFFLLQFLHQSRFSTMAQTLATPVLPSLSLICNTSSISKHSSLSFSTPTSFPKTAGLVIKCVRVGGVEVPNNKRVEFSLQYIHGIGRTTARQILVDLQMENKVMKDMSEEELITLREEVSKYMIEGDLRRFNALAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="68421" PGL_stop="68953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68421" e_stop="68953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68421" e_stop="68953" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68421" stop="68953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6694-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTGTAATCTCTCAATTTAAAAAAAATGTCATCCAATTTAGGAAAAATTGATGTTGAAGTTGAGGTGAAAAGTCCAGTTGACAAATTTTGGAATGGCATTAGGGACTCAATAAATTTGTTCCCCAAGGCTTCACCTAATGAATACAAGAGCATTGAAGTTGTTGAAGGTGATGGCAAGTCTGTTGGTTCTGTTCTATTGATCAAATATACTGAAGGTAATGTTCATGCATTGTTTCCTCATGTTTTAATTAATTTACGTGTCGTAACAGATAACTTATTTATTTTACAGATTTCAAATTCTCATTTTTTATGGATGGTTTGTCGGTTACTTGATCACTATACTACAAAAAAAATGGTCATTAGCAATAAAAACTAATCCAAAAAAACGTATTTTCTAATTTAATATCAAAAGACTTAAATTTTCTATATCTAAATTCACTATTAAATATTAGAAGTAACGAATCTCAAAATTCTGACTATGCCACATAGATTATAAAAGTTTAGAAGTACAAATCTCAAAATTCTTTGAA</gDNA_template>
            <first_frame> N  I  V  I  S  Q  F  K  K  N  V  I  Q  F  R  K  N  *  C  *  S  *  G  E  K  S  S  *  Q  I  L  E  W  H  *  G  L  N  K  F  V  P  Q  G  F  T  *  *  I  Q  E  H  *  S  C  *  R  *  W  Q  V  C  W  F  C  S  I  D  Q  I  Y  *  R  *  C  S  C  I  V  S  S  C  F  N  *  F  T  C  R  N  R  *  L  I  Y  F  T  D  F  K  F  S  F  F  M  D  G  L  S  V  T  *  S  L  Y  Y  K  K  N  G  H  *  Q  *  K  L  I  Q  K  N  V  F  S  N  L  I  S  K  D  L  N  F  L  Y  L  N  S  L  L  N  I  R  S  N  E  S  Q  N  S  D  Y  A  T  *  I  I  K  V  *  K  Y  K  S  Q  N  S  L   </first_frame>
            <second_frame>  I  L  *  S  L  N  L  K  K  M  S  S  N  L  G  K  I  D  V  E  V  E  V  K  S  P  V  D  K  F  W  N  G  I  R  D  S  I  N  L  F  P  K  A  S  P  N  E  Y  K  S  I  E  V  V  E  G  D  G  K  S  V  G  S  V  L  L  I  K  Y  T  E  G  N  V  H  A  L  F  P  H  V  L  I  N  L  R  V  V  T  D  N  L  F  I  L  Q  I  S  N  S  H  F  L  W  M  V  C  R  L  L  D  H  Y  T  T  K  K  M  V  I  S  N  K  N  *  S  K  K  T  Y  F  L  I  *  Y  Q  K  T  *  I  F  Y  I  *  I  H  Y  *  I  L  E  V  T  N  L  K  I  L  T  M  P  H  R  L  *  K  F  R  S  T  N  L  K  I  L  *  </second_frame>
            <third_frame>   Y  C  N  L  S  I  *  K  K  C  H  P  I  *  E  K  L  M  L  K  L  R  *  K  V  Q  L  T  N  F  G  M  A  L  G  T  Q  *  I  C  S  P  R  L  H  L  M  N  T  R  A  L  K  L  L  K  V  M  A  S  L  L  V  L  F  Y  *  S  N  I  L  K  V  M  F  M  H  C  F  L  M  F  *  L  I  Y  V  S  *  Q  I  T  Y  L  F  Y  R  F  Q  I  L  I  F  Y  G  W  F  V  G  Y  L  I  T  I  L  Q  K  K  W  S  L  A  I  K  T  N  P  K  K  R  I  F  *  F  N  I  K  R  L  K  F  S  I  S  K  F  T  I  K  Y  *  K  *  R  I  S  K  F  *  L  C  H  I  D  Y  K  S  L  E  V  Q  I  S  K  F  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0042B19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68431" stop="68799"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNLKKMSSNLGKIDVEVEVKSPVDKFWNGIRDSINLFPKASPNEYKSIEVVEGDGKSVGSVLLIKYTEGNVHALFPHVLINLRVVTDNLFILQISNSHFLWMVCRLLDHYTTKKMVISNKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 21 chains have been computed
$ 
$ memory statistics:
$ 203912 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 29130 bytes was the average size of a spliced alignment
$ 10576 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2115 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:04:31
-->
