<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:25:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256619" ref_strand="+" ref_description="SGN-E256619 [cLEG-38-F4]">
      <seq>acatactcatatggagaggacgggattgggtatcctctctacctgaagacggagacaatccagagataagggagggctcggaatctgttaatgctgctaacactaaccgatcctttgaagttcaagtggttgcatctactgcgggaagttcaagtttaccagttacagaagtgaatacttgcaatctcagtgctaacacttttcctctgggtgatgaagatgcagagtatgttagaaaggatggaacgaaggaagatagatcggaggatcactatccggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcagatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaacctgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaagctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75" stop="1340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="375" g_stop="1040" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E256619" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="375" e_stop="1040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATC</genome_strand>
        <mrna_strand>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTGCAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAACCTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAAGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698976" ref_strand="+" ref_description="SGN-E698976 [FA08AG04]">
      <seq>gactgagacaatccagagataagggagggctcggaatctgttaatgctgctaacactaaccgatcctttgaagttcaagtggttgcatctactgcgggaagttcaagtttaccagttacagaagtgaatacttgcaatctcagtgctaacacttttcctctgggtgatgaagatgcagagtatgttagaaaggatggaacgaaggaagatagatcggaggatcactatccggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcagatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaacctgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaggctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatcaaagggctgttgctctctctacatctgtcccacctggaccagtttttcagcatcaacctaagaaagtatcagttcaaagacgcggggaagaggaaattggtgatttggaggtaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="122" stop="1458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="422" g_stop="1158" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E698976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="422" e_stop="1158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATG</genome_strand>
        <mrna_strand>GACTGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTGCAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAACCTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298342" ref_strand="+" ref_description="SGN-E298342 [cLET-41-O14]">
      <seq>cggaatcttccaataaggtttctgttacaacgactgggataagtaaaagcgaaatccctctggtgtatgcaggagatacaggtgacaattctagaattctgagtgactgccgtgaatgcaaaacaaggtcggatgattcagtggtggataaagaaagtgagtttgagagcgcttcacatgatgtagaaaacaagtttgattcctcatctttggttcccttgactggttacaaggtgcattctctaacggtagatacgaaccaaaactgtcagctggtaagctctatcacgccgtgtacggaaggaattttactactttggaagcaggctattgaaagtgggagtgcagttgtattaaatgattctagtatcgatgctgacattgtctatcaaagggctgatgctctctctacatctgtcccacctggaccagtttttcagcatcaacctaagaaagtatcagttcaaagacgcggggaagaggaaattggtgatttggaggtaggatgcaccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="351" stop="1467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="651" g_stop="1167" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E298342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="651" e_stop="1167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</genome_strand>
        <mrna_strand>CGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCACATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGATGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411038" ref_strand="+" ref_description="SGN-E411038 [STM-14-C11]">
      <seq>tttctttttttgatcgntgaaatattgttattcattcataaagctatgctagtaatttggcaagttcgtctactcctaagcttccttttggtactacattcagatagtcttctcgaataccctttaacttctcctttcttgtactcgttgtcaaattgacctttctacctgaaacagcagtttcttttctcgaagaagctggagtatctaatttggtgcatcctacctccaaatcaccaatttcctcttccccgcgtctttgaactgacactttcttaggttgatgctgaaaaactggtccaggtggggcagatgtagagagagcaacagcccttagatagacaatgtcagcatcgatactagaatcatctaatagaactgcactcccactttcaatagcctgcttccaaagtagtaaaattccttccgtacatggcgtgattgagcttaccagctgacagttttggtttgtatctaccgttagagaatgcaccttgtaaccagtcaagggaaccaaagatgaggaatcaaacttgttttctacatcatctgaagcgctctccaactcattttctgtatccaccactgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1667" stop="484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1376" g_stop="784" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E411038" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1376" e_stop="784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGACTTGATCGTTGAAATATTGTTATTCATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACACGGCGTGATAGAGCTTACCAGCTGACAGTTTTGGTTCGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCAAACTCACTTTCTTTATCCACCACTGAATCA</genome_strand>
        <mrna_strand>TTTCTTTTTTTGATCGNTGAAATATTGTTATTCATTCATAAAGCTATGCTAGTAATTTGGCAAGTTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAGTCTTCTCGAATACCCTTTAACTTCTCCTTTCTTGTACTCGTTGTCAAATTGACCTTTCTACCTGAAACAGCAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGACACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGGCAGATGTAGAGAGAGCAACAGCCCTTAGATAGACAATGTCAGCATCGATACTAGAATCATCTAATAGAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACATGGCGTGATTGAGCTTACCAGCTGACAGTTTTGGTTTGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCCAACTCATTTTCTGTATCCACCACTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428756" ref_strand="+" ref_description="SGN-E428756 [STM-50-L2]">
      <seq>cattcataaagctatgctagtaatttggcaagttcgtctactccttttcttccttttggtactacattcagatagtcttctcgaataccctttaacttctcctttcttgtactcgttgtcaaattgacctttctacctgaaacagcagtttcttttctcgaagaagctggagtatctaatttggtgcatcctacctccaaatcaccaatttcctcttccccgcgtctttgaactgacactttcttaggttgatgctgaaaaactggtccaggtggggcagatgtagagagagcaacagcccttagatagacaatgtcagcatcgatactagaatcatctaatagaactgcactcccactttcaatagcctgcttccaaagtagtaaaattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="1644" stop="650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1344" g_stop="950" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E428756" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1344" e_stop="950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTC</genome_strand>
        <mrna_strand>CATTCATAAAGCTATGCTAGTAATTTGGCAAGTTCGTCTACTCCTTTTCTTCCTTTTGGTACTACATTCAGATAGTCTTCTCGAATACCCTTTAACTTCTCCTTTCTTGTACTCGTTGTCAAATTGACCTTTCTACCTGAAACAGCAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGACACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGGCAGATGTAGAGAGAGCAACAGCCCTTAGATAGACAATGTCAGCATCGATACTAGAATCATCTAATAGAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401399" ref_strand="+" ref_description="SGN-E401399 [PPC-4-E21]">
      <seq>tgtttattggtgggctttttcttcctgagaccccaaacagtctcgtagaacagggtaaattacaggaagcaagacaagtattggagaaaattagaggtaccacaaaagttgatgcagagtttgctgatcttaaagatgcaagtgatgctgcgagagccataaaagatccattcaggaatctcctcaagaggaagaaccgtccccaattggtaatagcagctttggggatcccagcattccaacagcttaccggcatgaactccattcttttctacgcccctgtcatatttcagagcttaggatttggctcaggagcatcattgtattcatctgctataaccagtggtgcacttgttctagctacatttatttcaatggcttttgttgacaagtttggaagaagagctttctttctggaagctggagttgaaatgatatgtgtcttggtagcagttgcggttactctagcttttgagtttggagaaggtgaagaactccccaaaaggaattggcatcttccttgtagccataatctgcatatttgtcgtcgcatatggaagggtcttgggtcccttaagttggctggtaccaagtgaactatttcccctggaaacaagatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3038" stop="1741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2738" g_stop="2293" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2292" i_stop="2217" i_length="76">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2216" g_stop="2041" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="623" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E401399" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2738" e_stop="2293"/>
          <exon e_start="2216" e_stop="2041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTGGTAATTTTCTGCTTTGAAATTCTTCCTGACAAGGCTTTCGTTATAGCATATACTTGACTGGAAGTTTGTTTCACAGGTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGAGAAGGTGAAGAACT-CCCAAAAGGAATTGGCATCTTCCTTGTAGTCATAATCTGCATATTTGTTGTCGCATATGGAAGGTCTTGGGGTCCCTTAGGTTGGCTGGTGCCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</genome_strand>
        <mrna_strand>TGTTTATTGGTGGGCTTTTTCTTCCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTGGAGAAAATTAGAGGTACCACAAAAGTTGATGCAGAGTTTGCTGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAGAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGCTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTTATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTCTTG............................................................................GTAGCAGTTGCGGTTACTCTAGCTTTTGAGTTTGGAGAAGGTGAAGAACTCCCCAAAAGGAATTGGCATCTTCCTTGTAGCCATAATCTGCATATTTGTCGTCGCATATGGAAGGGTCTTGGGTCCCTTAAGTTGGCTGGTACCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401137" ref_strand="+" ref_description="SGN-E401137 [PPC-3-O5]">
      <seq>tgtttattggtgggctttttcttcctgagaccccaaacagtctcgtagaacagggtaaattacaggaagcaagacaagtattggagaaaattagaggtaccacaaaagttgatgcagagtttgctgatcttaaagatgcaagtgatgctgcgagagccataaaagatccattcaggaatctcctcaagaggaagaaccgtccccaattggtaatagcagctttggggatcccagcattccaacagcttaccggcatgaactccattcttttctacgcccctgtcatatttcagagcttaggatttggctcaggagcatcattgtattcatctgctataaccagtggtgcacttgttctagctacatttatttcaatggcttttgttgacaagtttggaagaagagctttctttctggaagctggagttgaaatgatatgtgtcttggtagcagttgcggttactctagctttgaagtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3038" stop="1990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2738" g_stop="2293" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2292" i_stop="2217" i_length="76">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2216" g_stop="2181" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="482" r_length="36" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E401137" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2738" e_stop="2293"/>
          <exon e_start="2216" e_stop="2181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTGGTAATTTTCTGCTTTGAAATTCTTCCTGACAAGGCTTTCGTTATAGCATATACTTGACTGGAAGTTTGTTTCACAGGTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGA</genome_strand>
        <mrna_strand>TGTTTATTGGTGGGCTTTTTCTTCCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTGGAGAAAATTAGAGGTACCACAAAAGTTGATGCAGAGTTTGCTGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAGAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGCTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTTATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTCTTG............................................................................GTAGCAGTTGCGGTTACTCTAGCTTTGAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324934" ref_strand="+" ref_description="SGN-E324934 [cTOC-11-I2]">
      <seq>tttccaatctaaatcacaagcagatcgcgatagtactattcattttttatattggtaaatttgtgctttattgggaactgggatagatgtatatttgggctatattaataatacgatgcttttgggtttctcatcaactcttggcctttcattctcaattctcactcgtatgtttcgtctctacttgatcattgtatttcataaacagaaagatcttgattaacttatcttctgatgcaacatggacgacccctttctacatcttgcaagcttgagctcttatatagcccagcaatttgttcaatttattgaggatcttatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53658" stop="55289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53958" g_stop="54128" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54129" i_stop="54838" i_length="710">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54839" g_stop="54978" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="311" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55090" g_stop="55103" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="325" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E324934" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53958" e_stop="54128"/>
          <exon e_start="54839" e_stop="54978"/>
          <exon e_start="55090" e_stop="55103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAATCTAAATCACAAGCAGATCGTGATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTAGATTTTGGCTATATTTATAATAGGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTATGTAAGTTCATTGCTCTCCGTTTCTTTTTTTTGAGTTAATTTGATCAAATTCTCTCCTAATACCGTTATCTGGTTATGCTGATAAAATCAGCCTTTAAAAATTCAACATGACATAACATAGGTGTGGAATTTGTACCGGATATGGTTCATCGATTTTGTGTATTTGATAGTGAAATGATTTTTGTGGAAAAAAAAAGAGAGAGAAATGTGTTTCCATATTTAAAAGATATTTGTATTTACAACTCTGCAACCAGAGGTTGTATTAGTGTTGATGAACAGTTTATCATCCAAAAAAGAATGGTACATTTGTATTTCTTTCCTTTCAAATAATGTAGGATATATTTCTATAAATGGGCATTTAAGCCGAATCTATTCCTTGATCTGTACGGGACTCCCGTATAATTTAGATCATGACAGACGAGTCCGAGTAACTTAGGATTGAACTGATGAGTGTTGAGGTTAACGAAATACTAGGACTCCGCGTGTTCTATTCTTCCCTCGCATACCTTGAATTCATTTCTGTCGTAATTTTAAATGAGGTCTCATCTGAATGTAGTATATCTATTGGAGAAATCATCAGCGCTCGCTGAGAAGTAATTGTGAAGTGTGTTATACTCATTACTTAATGTCAGCTTTGACTTGCATCAGTGTATTGATCTTTTCTTCTGCTGCTTGAATGAATACATGATCTGATTTGGTGCTTCTTTGCAGGTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGC</genome_strand>
        <mrna_strand>TTTCCAATCTAAATCACAAGCAGATCGCGATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTATATTTGGGCTATATTAATAATACGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247406" ref_strand="+" ref_description="SGN-E247406 [cLEF-46-P15]">
      <seq>gatagtactattcattttttatattggtaaatttgtgctttattgggaactgggatagatgtagattttggctatatttataataggatgcttttgggtttctcatcaactcttggcctttcattctcaattctcactcgtatgtttcgtctctacttgatcattgtatttcataaacagaaagatcttgattaacttatcttctgatgcaacatggacgacccctttctacatcttgcaagcttgagctcttatatagcccagcaatttgttcaatttattgaggatcttatctgcagagatctacttgggtggtcagaatatttagttgattttggtggtctgcttgtaaactttacaactgttcccgaagcttgttcatttccttcaagagtatctgacacaggaacaagctttagatttcacgggagaagatcctcctatgtcaatgataacttgcctgtaaattcattcttagaaattgtaagaagtaatcaaagttatggaggtttcagactcatttttgaagggtaaacttttcatgtatatgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53686" stop="55662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53986" g_stop="54128" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54129" i_stop="54838" i_length="710">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54839" g_stop="54978" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="283" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55090" g_stop="55362" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="556" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E247406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53986" e_stop="54128"/>
          <exon e_start="54839" e_stop="54978"/>
          <exon e_start="55090" e_stop="55362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTAGATTTTGGCTATATTTATAATAGGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTATGTAAGTTCATTGCTCTCCGTTTCTTTTTTTTGAGTTAATTTGATCAAATTCTCTCCTAATACCGTTATCTGGTTATGCTGATAAAATCAGCCTTTAAAAATTCAACATGACATAACATAGGTGTGGAATTTGTACCGGATATGGTTCATCGATTTTGTGTATTTGATAGTGAAATGATTTTTGTGGAAAAAAAAAGAGAGAGAAATGTGTTTCCATATTTAAAAGATATTTGTATTTACAACTCTGCAACCAGAGGTTGTATTAGTGTTGATGAACAGTTTATCATCCAAAAAAGAATGGTACATTTGTATTTCTTTCCTTTCAAATAATGTAGGATATATTTCTATAAATGGGCATTTAAGCCGAATCTATTCCTTGATCTGTACGGGACTCCCGTATAATTTAGATCATGACAGACGAGTCCGAGTAACTTAGGATTGAACTGATGAGTGTTGAGGTTAACGAAATACTAGGACTCCGCGTGTTCTATTCTTCCCTCGCATACCTTGAATTCATTTCTGTCGTAATTTTAAATGAGGTCTCATCTGAATGTAGTATATCTATTGGAGAAATCATCAGCGCTCGCTGAGAAGTAATTGTGAAGTGTGTTATACTCATTACTTAATGTCAGCTTTGACTTGCATCAGTGTATTGATCTTTTCTTCTGCTGCTTGAATGAATACATGATCTGATTTGGTGCTTCTTTGCAGGTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTC</genome_strand>
        <mrna_strand>GATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTAGATTTTGGCTATATTTATAATAGGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAAGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293174" ref_strand="+" ref_description="SGN-E293174 [cLET-12-J14]">
      <seq>atgcttttgggtttctcatcaactcttggcctttcattctcaattctcactcgtatgtttcgtctctacttgatcattgtatttcataaacagaacgatcttgattaacttatcttctgatgcaacatggacaacccctttctacatcttgcgagcttgagctcttatatagcccagccatttgttcaatttattgaggatcttatctgcagagatctacttgggtggtcagaatatttagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53773" stop="55437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54073" g_stop="54128" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54129" i_stop="54838" i_length="710">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54839" g_stop="54978" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="196" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55090" g_stop="55137" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="244" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E293174" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54073" e_stop="54128"/>
          <exon e_start="54839" e_stop="54978"/>
          <exon e_start="55090" e_stop="55137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTATGTAAGTTCATTGCTCTCCGTTTCTTTTTTTTGAGTTAATTTGATCAAATTCTCTCCTAATACCGTTATCTGGTTATGCTGATAAAATCAGCCTTTAAAAATTCAACATGACATAACATAGGTGTGGAATTTGTACCGGATATGGTTCATCGATTTTGTGTATTTGATAGTGAAATGATTTTTGTGGAAAAAAAAAGAGAGAGAAATGTGTTTCCATATTTAAAAGATATTTGTATTTACAACTCTGCAACCAGAGGTTGTATTAGTGTTGATGAACAGTTTATCATCCAAAAAAGAATGGTACATTTGTATTTCTTTCCTTTCAAATAATGTAGGATATATTTCTATAAATGGGCATTTAAGCCGAATCTATTCCTTGATCTGTACGGGACTCCCGTATAATTTAGATCATGACAGACGAGTCCGAGTAACTTAGGATTGAACTGATGAGTGTTGAGGTTAACGAAATACTAGGACTCCGCGTGTTCTATTCTTCCCTCGCATACCTTGAATTCATTTCTGTCGTAATTTTAAATGAGGTCTCATCTGAATGTAGTATATCTATTGGAGAAATCATCAGCGCTCGCTGAGAAGTAATTGTGAAGTGTGTTATACTCATTACTTAATGTCAGCTTTGACTTGCATCAGTGTATTGATCTTTTCTTCTGCTGCTTGAATGAATACATGATCTGATTTGGTGCTTCTTTGCAGGTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTG</genome_strand>
        <mrna_strand>ATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAACGATCTTGATTAACTTATCTTCTGATGCAACATGGACAACCCCTTTCTACATCTTGCGAGCTTGAGCTCTTATATAGCCCAGCCATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708572" ref_strand="+" ref_description="SGN-E708572 [FA36AE10]">
      <seq>cctttcactcgtatgtttcgtctctacttgatcattgtatttcctaaacagaaagatcttgattaacttatcttctgatgcaacatggacgacccctttctacatcttgcaagcttgagctcttatatagcccagcaatttgttcaatttattgaggatcttatctgcagagatctacttgggtggtcagaatatatagcggattttggtggtctgcttgtaaactttacaactgttcccgaggcttgttcatttccttcaagagtatctgacacaggaacaagctttagatttcacgggagaagatcctcctatgtcaatgataacttgcctgtaaattcattcttagaaattgtaagaagtaatcaaagttatggaggtttcagactcatttttgaagggttgatgcttccagtatatggtctgagattcacttggaaacttacgttggcatcttggaggtgtttcgtatctcatatcatatgtgctctagttcaagttcagagtgttatatcccgtgtatgtacaactttgcgtgggtcttctgatgacattgggtggttgcaacaagctcctgaaatggctcctgttgttgatggttcagctagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54533" stop="56196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54839" g_stop="54978" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="154" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55090" g_stop="55336" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="401" r_length="247" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55337" i_stop="55548" i_length="212">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55549" g_stop="55653" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="506" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55654" i_stop="55790" i_length="137">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55791" g_stop="55896" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="612" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E708572" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54839" e_stop="54978"/>
          <exon e_start="55090" e_stop="55336"/>
          <exon e_start="55549" e_stop="55653"/>
          <exon e_start="55791" e_stop="55896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTCCCATCATCCTTCGAGGTCGTTATGCAGATATCTATGGATTCCTCGATATTCAGAATCAGAATTAGAACTCTGAACATAAGAACTCAACTTATTTCAGTTTTATTTTCTAGTAGCACATATCTCTTTCCGCCATCACATAGTCATGACTGTCCTAATTTATTCTGCAGTTGGTTGATCTGGTTGTAGGTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAGGTTAGTAATCACTTCCTGACTGTCGGTAAATGATAAATATGTGAAGATCGGTGAGTATTTTAGATCATTTCTTACATTTGACATTCAACACCTTTACTTATAGTTTCCTACTACTTACTCTTCACTAATCTTTTCAGTGTTATATCCCGTGTACGTACAACTTTGCGTGGGTCTTCTGATGACATTGGGTGGTTGCAACAAGCTCCTGAAATGGCTCCTGTTGTTGATGGTTCAGCTAGATTT</genome_strand>
        <mrna_strand>GTTTCGTCTCTACTTGATCATTGTATTTCCTAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATATAGCGGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGG....................................................................................................................................................................................................................GTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCATATGTGCTCTAGTTCAAGTTCAGAG.........................................................................................................................................TGTTATATCCCGTGTATGTACAACTTTGCGTGGGTCTTCTGATGACATTGGGTGGTTGCAACAAGCTCCTGAAATGGCTCCTGTTGTTGATGGTTCAGCTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398258" ref_strand="+" ref_description="SGN-E398258 [TUS-14-G19]">
      <seq>catgcttgagctcttatatagcccagcaatttgttcaatttattgaggatcttatctgcagagatctacttgggtggtcagaatatttagttgattttggtggtctgcttgtaaactttacaactgttcccgaggcttgttcatttccttcaagagtatctgacacaggaacaagctttagatttcacgggagaagatcctcctatgtcaatgataacttgcctgtaaattcattcttagaaattgtaagaagtaatcaaagttatggaggtttcagactcatttttgaagggttgatgcttccagtatatggtctgagattcacttggaaacttacgttggcatcttggaggtgtttcgtatctcatatcagatgtgctctagttcaagttcagagtgttatatcccgtgtatgtacaactttgcgtgggtcttctgatgacattgggtggttgcaacaagctcctgaaatggctcctgttgttgatggttcagctagatttagagaactactacaaggtattaggaatggacagcacacactgcccgattcttttgtttatctactgattccagggtttttcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54634" stop="57477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54934" g_stop="54978" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55090" g_stop="55336" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="292" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55337" i_stop="55548" i_length="212">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55549" g_stop="55653" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="397" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55654" i_stop="55790" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55791" g_stop="55919" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="526" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55920" i_stop="57123" i_length="1204">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57124" g_stop="57173" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="576" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E398258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54934" e_stop="54978"/>
          <exon e_start="55090" e_stop="55336"/>
          <exon e_start="55549" e_stop="55653"/>
          <exon e_start="55791" e_stop="55919"/>
          <exon e_start="57124" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTCCCATCATCCTTCGAGGTCGTTATGCAGATATCTATGGATTCCTCGATATTCAGAATCAGAATTAGAACTCTGAACATAAGAACTCAACTTATTTCAGTTTTATTTTCTAGTAGCACATATCTCTTTCCGCCATCACATAGTCATGACTGTCCTAATTTATTCTGCAGTTGGTTGATCTGGTTGTAGGTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAGGTTAGTAATCACTTCCTGACTGTCGGTAAATGATAAATATGTGAAGATCGGTGAGTATTTTAGATCATTTCTTACATTTGACATTCAACACCTTTACTTATAGTTTCCTACTACTTACTCTTCACTAATCTTTTCAGTGTTATATCCCGTGTACGTACAACTTTGCGTGGGTCTTCTGATGACATTGGGTGGTTGCAACAAGCTCCTGAAATGGCTCCTGTTGTTGATGGTTCAGCTAGATTTAGAGAACTACTACAAGGTATTAGGTAAGATGATGGATCTTACTAGTCACTTAGAAAATAGAAACAAAGCCAGATATCCTTGAATAATTATGTCTCCCAATATAAAGACCACATATCTTGTCAGCGGTGAGTTCTTGGTCATTTTTCTTTTTTATCAATTGAGATAGGTGCTGAATAACATGAAAATGAAAACAGACCAACTGCATACTATATTAAACTATCAATCATCATGGAAGGGTTCTGTGTTTAGCTGATGATATTCTTTTCCAGGCTGTTGCCATATTTCATGTTAATTTTGAGTTTTTGGTTTTACTGGCCGACCTTAAAACTCCAGGACTGATGACTTATTGCTCGGAATGTGTGTTTCCTTCTACTTCTTTTGGCTACTCTGTGTAGTGACGAAAGAAGTATCTTAACTACTTAAAGTGATGGTCGTGATATTAACTATGTTAGTAGGATACTCCTACCAATTTTGAATGAGATCCAACCAAGCAATATTATGTGCTTTTCATTTAAATGTTATAGATTGACAAAGTCTTTTTGAAATATGGAACACAGCAATATGAAAAGCTGTGTTTCAGCAGTATGAATCATTACCCTCTTACTTTGGCGTTTACTAACATAACTTGTCTGAATATGAATTTTGCAAATATGACAAGTCCTGAAACACCATTATTGTTTCAAATGTTAACAGAAAAACCAAAAGATCTTAATGTTGAGTTGTATTTACTCTATGCTCATCAGTTTTTGGTTTCCCTGAAGGATTCTTAGTAGCAACTACAAATGAAAGGAGGCACCAGGACATTTTATTCTGCATTTTCATTTTGGCATGTTAATATTGGGGGGGGGGGATGCTTTGCTTTTGTTTACTTCCGAGTTTCTAATATTGGAAAGATTCGTGTTTTAAACAATATAGCTGAGGATATATAAAAACCATTGTGTATATATTGTCCTACGATTAGATTCCTTAGCAAGTGGCTTTTGTTACTGAAGGATATGCAAAAATATATGAAGGTTATCTTCATTTCTCTCGACTGTTTTTGGTCAACATTCTTTTGTAGTCCTATGCCACAATACAACTGTGCTAACTCAACAGGATTATCTCTAGTTATCAATGATAGTTAGTCTGTCGCTGGTTGAGTCTTCACGTTAATTTTAATATTTCCTTGCAACTGCCTAACTGCTAATTAACGACAATTTTCGTTTGATTTTTTTCTTCCTTTTTTAGGAATGGACAGCACACACTGCCCGATTCTTTTGTTTATCTACTGATTCCAG</genome_strand>
        <mrna_strand>CATGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGG....................................................................................................................................................................................................................GTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAG.........................................................................................................................................TGTTATATCCCGTGTATGTACAACTTTGCGTGGGTCTTCTGATGACATTGGGTGGTTGCAACAAGCTCCTGAAATGGCTCCTGTTGTTGATGGTTCAGCTAGATTTAGAGAACTACTACAAGGTATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACAGCACACACTGCCCGATTCTTTTGTTTATCTACTGATTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202344" ref_strand="+" ref_description="SGN-E202344 [cLEC-6-L11]">
      <seq>aagcttgagctcttatatagcccagcaatttgttcaatttattgaggatcttatctgcagagatctacttgggtggtcagaatatttagttgattttggtggtctgcttgtgaactttacaactgttcccgaggcttgttcatttccttcaagagtatctgacacaggaacaagctttagatttcacgggagaagatcctcctatgtgaatgataacttgcctgtaaattcattcttagagattgtaagaagtaatcaaagttatggaggtttcagactcatttttgaagggttgatgcttccagtatatggtctgagattcacttggaaacttacgttggcatgttggaggtgttccgtatctcatatcagatgtgctctagttcaagttcagagtgttatatcccgtgtatgcacaactttgcgtgggtcttctgatgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54635" stop="56140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54935" g_stop="54978" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111">
            <donor d_prob="0.336" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55090" g_stop="55336" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="291" r_length="247" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55337" i_stop="55548" i_length="212">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55549" g_stop="55653" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="396" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55654" i_stop="55790" i_length="137">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55791" g_stop="55840" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="446" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E202344" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54935" e_stop="54978"/>
          <exon e_start="55090" e_stop="55336"/>
          <exon e_start="55549" e_stop="55653"/>
          <exon e_start="55791" e_stop="55840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTGGTGAGGTCTCTAAAAAATTATGCACGTGCAAAGTATGAAGTTCTTGAACATCTATTCTTTTATATTCGCTGTCTATGGCTTCCCATTGATAAAGGTTTGATTCTATTGCAGAGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTCCCATCATCCTTCGAGGTCGTTATGCAGATATCTATGGATTCCTCGATATTCAGAATCAGAATTAGAACTCTGAACATAAGAACTCAACTTATTTCAGTTTTATTTTCTAGTAGCACATATCTCTTTCCGCCATCACATAGTCATGACTGTCCTAATTTATTCTGCAGTTGGTTGATCTGGTTGTAGGTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAGGTTAGTAATCACTTCCTGACTGTCGGTAAATGATAAATATGTGAAGATCGGTGAGTATTTTAGATCATTTCTTACATTTGACATTCAACACCTTTACTTATAGTTTCCTACTACTTACTCTTCACTAATCTTTTCAGTGTTATATCCCGTGTACGTACAACTTTGCGTGGGTCTTCTGATGACATTG</genome_strand>
        <mrna_strand>AAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG...............................................................................................................AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTGAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTGAATGATAACTTGCCTGTAAATTCATTCTTAGAGATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGG....................................................................................................................................................................................................................GTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATGTTGGAGGTGTTCCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAG.........................................................................................................................................TGTTATATCCCGTGTATGCACAACTTTGCGTGGGTCTTCTGATGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393795" ref_strand="+" ref_description="SGN-E393795 [TUS-14-G19](-)">
      <seq>agggtgattatacgggcattagaggatctaacatacgaaaagcgaaaggagtttttaaaaaaccacaagcttcccgatgatattccactcatctccttccattctgaagcaagtatagcactgaatgtaatagcaacaatgtcccatatagcacatgcagaacttccgtggctacctttgcccggatttggtgacgatgagtcggaaaatgtgatccaagcaggttgtaaggtgcctgtcatagttcctgtttctgctgcactggctctttgtgctctgcacctgcaactaaggtatggagagaagagtgatggtctagtgacctgtcgtgatgctgaagttcctggctcagttgttgtaaaaccagacataaagcttgatcatgcttggatggtttattcgtcgtggaggaaggacccaaatgaaccggacgctagtgaaatgtgtgaggctctcttaactatgcttgtggaactcggtatgaaacgaaaggaagtactttgttaactatgtatgtgatgttagatcgaatcatttgaacaatgaagttccctgataagtagatgtatgaaactgaaacatcagatgttttttccaacctactctgtcaagatatggttttgttttagttagtacgtattatctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59042" stop="60292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59342" g_stop="59985" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="659"/>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E393795" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59342" e_stop="59985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGA-TATACGGGCATTAGAGGATCTAACATACGAAAAGCGAAAGGAGTTCTTAAAAAACCACAAGCTTCCCGATGATATTCCACTCATCTCCTTCCATTCTGAAGCAAGTATAGCACTGAATGTAATAGCAACAATGTCCCATATAGCACATGCAGAACTTCCGTGGCTACCTTTGCCCGGATTTGGTGACGATGAGTCGGAAAATGTGATCCAAGCAGGTTGTAAGGTGCCTGTCATAGTTCCTGTTTCTGCTGCACTGGCTCTTTGTGCTCTGCACCTGCAACTAAGGTATGGAGAGAAGAGTGATGGTCTAGTGACCTGTCGTGATGCTGAAGTTCCCGGCTCAGTTGTTGTAAAACCAGACATAAAGCTTGATCATGCTTGGATGGTTTATTCGTCGTGGAGGAAGGACCCAAATGAACCGGACGCTAGTGAAATGTGTGAGGCTCTCTTAACTATGCTTGTGGAACTCGGTATGAAACGAAAGGAAGTACTTTGTTAACTATGTGTGTGATGTTAGATCGAATCATTTGAACAATGAAGTTCCCTGATAAGTAGATGTATGAAACTGAAACATCAGATGTTTTTTCCAACCTACTCTGTCAAGATATGGTTTTGTTTTAGTTAGTACGTATTATCT</genome_strand>
        <mrna_strand>AGGGTGATTATACGGGCATTAGAGGATCTAACATACGAAAAGCGAAAGGAGTTTTTAAAAAACCACAAGCTTCCCGATGATATTCCACTCATCTCCTTCCATTCTGAAGCAAGTATAGCACTGAATGTAATAGCAACAATGTCCCATATAGCACATGCAGAACTTCCGTGGCTACCTTTGCCCGGATTTGGTGACGATGAGTCGGAAAATGTGATCCAAGCAGGTTGTAAGGTGCCTGTCATAGTTCCTGTTTCTGCTGCACTGGCTCTTTGTGCTCTGCACCTGCAACTAAGGTATGGAGAGAAGAGTGATGGTCTAGTGACCTGTCGTGATGCTGAAGTTCCTGGCTCAGTTGTTGTAAAACCAGACATAAAGCTTGATCATGCTTGGATGGTTTATTCGTCGTGGAGGAAGGACCCAAATGAACCGGACGCTAGTGAAATGTGTGAGGCTCTCTTAACTATGCTTGTGGAACTCGGTATGAAACGAAAGGAAGTACTTTGTTAACTATGTATGTGATGTTAGATCGAATCATTTGAACAATGAAGTTCCCTGATAAGTAGATGTATGAAACTGAAACATCAGATGTTTTTTCCAACCTACTCTGTCAAGATATGGTTTTGTTTTAGTTAGTACGTATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435185" ref_strand="+" ref_description="SGN-E435185 [STM-61-K1]">
      <seq>ttttttactagctaaaaaaaaccttttctagacattaatcagagtaggttggaaaaaacatctgatatttcagtcccatctagttatcagggaacttgattgttcaaaggattcgatctaacatcgcatacgtagtcaacaaacttcctttcgtttcataccgagttccacaagcatagttaagagagcctcacacatttcactagcgtccgcttcatttgggtcctttctccatgacgaataaaccatccaagcatgatcaagctttatgtctggttttacaaccactgacccgggaacttcagcatcacgacaggtcactagaccatcactcttctctccataccttagttgcaggtggagagcacaaagagccagtgcagcagaaacaggaactatgacaggcaccttgcaccctgcttggatcacattctccgactcattgtcaccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60258" stop="59225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59944" g_stop="59525" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="455" r_length="413" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E435185" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59944" e_stop="59525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGGTTGGAAAAAACATCTGATGTTTCAGTTTCATACATCTACTTATCAGGGAACTTCATTGTTCAAATGATTCGATCTAACATCACACACATAGTTAACAAAGTACTTCCTTTCGTTTCATACCGAGTTCCACAAGCATAGTTAAGAGAGCCTCACACATTTCACTAGCGTCCGGTTCATTTGGGTCCTTCCTCCACGACGAATAAACCATCCAAGCATGATCAAGCTTTATGTCTGGTTTTACAACAACTGAGCCGGGAACTTCAGCATCACGACAGGTCACTAGACCATCACTCTTCTCTCCATACCTTAGTTGCAGGTGCAGAGCACAAAGAGCCAGTGCAGCAGAAACAGGAACTATGACAGGCACCTTACAACCTGCTTGGATCACATTTTCCGACTCATCGTCACCAAATC</genome_strand>
        <mrna_strand>AGTAGGTTGGAAAAAACATCTGATATTTCAG--TC--CCATCTAGTTATCAGGGAACTTGATTGTTCAAAGGATTCGATCTAACATCGCATACGTAGTCAAC-AA--ACTTCCTTTCGTTTCATACCGAGTTCCACAAGCATAGTTAAGAGAGCCTCACACATTTCACTAGCGTCCGCTTCATTTGGGTCCTTTCTCCATGACGAATAAACCATCCAAGCATGATCAAGCTTTATGTCTGGTTTTACAACCACTGACCCGGGAACTTCAGCATCACGACAGGTCACTAGACCATCACTCTTCTCTCCATACCTTAGTTGCAGGTGGAGAGCACAAAGAGCCAGTGCAGCAGAAACAGGAACTATGACAGGCACCTTGCACCCTGCTTGGATCACATTCTCCGACTCATTGTCACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230305" ref_strand="+" ref_description="SGN-E230305 [cLEL-33-E13](-)">
      <seq>gcttggatggtttattcgtcgtggaggaaggacccaaatgaaccggacgctagtgaaatgtgtgaggctctcttaactatgcttgtggaactcggtatgaaacgaaaggaagtactttgttaactatgtatgtgatgttagatcgaatcatttgaacaatgaagttccctgataagtagatgtatgaaactgaaacatcagatgttttttccaacctactctgtcaagatatggttttgttttagttagtacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59425" stop="60276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59725" g_stop="59976" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="253" polyA_stop="268"/>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E230305" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59725" e_stop="59976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGATGGTTTATTCGTCGTGGAGGAAGGACCCAAATGAACCGGACGCTAGTGAAATGTGTGAGGCTCTCTTAACTATGCTTGTGGAACTCGGTATGAAACGAAAGGAAGTACTTTGTTAACTATGTGTGTGATGTTAGATCGAATCATTTGAACAATGAAGTTCCCTGATAAGTAGATGTATGAAACTGAAACATCAGATGTTTTTTCCAACCTACTCTGTCAAGATATGGTTTTGTTTTAGTTAGTAC</genome_strand>
        <mrna_strand>GCTTGGATGGTTTATTCGTCGTGGAGGAAGGACCCAAATGAACCGGACGCTAGTGAAATGTGTGAGGCTCTCTTAACTATGCTTGTGGAACTCGGTATGAAACGAAAGGAAGTACTTTGTTAACTATGTATGTGATGTTAGATCGAATCATTTGAACAATGAAGTTCCCTGATAAGTAGATGTATGAAACTGAAACATCAGATGTTTTTTCCAACCTACTCTGTCAAGATATGGTTTTGTTTTAGTTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710812" ref_strand="+" ref_description="SGN-E710812 [FA56DC06]">
      <seq>ccctttatattgatgagacttttgaagcattttttttgttaccgatacctatgcatccagatttgcttccagaattaatgaatggtcttgacagatgcctgcagaactacatattgaaggctatatctggctgtggatctcgaagtgcctttgttccgactatgcctgctttgactagatgctcaactgggtcaaaattccgtgtgttcaggaagaaagagagatctcctatggttccgtataggaaatctcaaagtgggaccactaatggagatgattctttcagcatacctcagttgtgtgtccgtataaatactttgcattccatacgaaaagaattacatgcacttgagaaaaggacaatttctcaattgagggataatacacctgttcatgatgataatattgttgatgggttgggcaaatgttttgagctgtcagtagcttcttgcttggaagggatccagcagctttctgaagcaatttcatataaaatcatcttccatgagttgaggcatatcttctgggattatcctatatgtagcagatgtttcatcatcccggattgaacctttcctccaggagctggagaataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90573" stop="91845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90866" g_stop="91000" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91001" i_stop="91083" i_length="83">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91084" g_stop="91545" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="598" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E710812" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90866" e_stop="91000"/>
          <exon e_start="91084" e_stop="91545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCAGTATTGATGAGACTTTTGAAGCATTTTTTTTGTTACCGATACCTATGCATCCAGATTTGCTTCCAGAATTAATGAATGGTCTTGACAGATGCCTGCAGAACTACATATTGAAGGCTATATCTGGCTGTGGTAAATATTAATTTTGGCTGCCATGTATTGATAAATGATGTGATAGTTGACATTGTAGATCACTAATTTCTAGTGTGTTGCAGGATCTCGAAGTGCCTTTGTTCCGACTATGCCTGCTTTGACTAGATGCTCAACTGGGTCAAAATTCCGTGTGTTCAGGAAGAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTAT-CTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACC</genome_strand>
        <mrna_strand>CCCTTTATATTGATGAGACTTTTGAAGCATTTTTTTTGTTACCGATACCTATGCATCCAGATTTGCTTCCAGAATTAATGAATGGTCTTGACAGATGCCTGCAGAACTACATATTGAAGGCTATATCTGGCTGTG...................................................................................GATCTCGAAGTGCCTTTGTTCCGACTATGCCTGCTTTGACTAGATGCTCAACTGGGTCAAAATTCCGTGTGTTCAGGAAGAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTACATGCACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACCTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGCTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCCTATATGTAGCAGATGTTTCATCATCCCGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426431" ref_strand="+" ref_description="SGN-E426431 [STM-46-F23]">
      <seq>gaaagagagacctcctatggtttcgtataggaaatctcagagtgggaccactaatggagatgattctttcagtatacctcagctgtgtgtccgtataaatactttgcattccatacgaaaagaattagatgtacttgagaaaaggacaatttcccaactgagggataatacgcgtgctcatgaggataatattgttgatgggttgggcaaatgttttgagctgtcagtagcttcttgtttggaagggatccagcagctttctgaagcaatttcatataaaatcatcttccatgagttgaggcatatcttctgggattatctatatgtagcagatgtttcatcatcccggattgaacctttccttcaggagctggagaataaccttgagatcatatcggcaacagttcatgacagggtccggacacgtgtaatcactaatgtaatgaaagcctcttttgatggattcttgttgattttgttggcgggaggaccctctcgtgctttttcacttgctgatgctgcaattatagatgaagatttgaagttcctaatggatctattctggtctgatggggatgggttaccgactgaccttatagacaagttttcagctactttgaaaggcattcttcctctttttcatactgataccgctatcctgattgaagcacttgagtatgccactgaagataatttgggcactttcagctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90863" stop="92176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91163" g_stop="91871" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E426431" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91163" e_stop="91871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCAC-TTCAGCT</genome_strand>
        <mrna_strand>GAAAGAGAGACCTCCTATGGTTTCGTATAGGAAATCTCAGAGTGGGACCACTAATGGAGATGATTCTTTCAGTATACCTCAGCTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCCCAACTGAGGGATAATACGCGTGCTCATGAGGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCCGGATTGAACCTTTCCTTCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGGACACGTGTAATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCGGGAGGACCCTCTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTGAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTTTTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTTCATACTGATACCGCTATCCTGATTGAAGCACTTGAGTATGCCACTGAAGATAATTTGGGCACTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456811" ref_strand="+" ref_description="SGN-E456811 [cSTS-30-J7]">
      <seq>gaaagagagacctcctatggtttcgtataggaaatctcagagtgggaccactaatggagatgattctttcagtatacctcagctgtgtgtccgtataaatactttgcattccatacgaaaagaattagatgtacttgagaaaaggacaatttcccaactgagggataatacgcgtgctcatgaggataatattgttgatgggttgggcaaatgttttgagctgtcagtagcttcttgtttggaagggatccagcagctttctgaagcaatttcatataaaatcatcttccatgagttgaggcatatcttctgggattatctatatgtagcagatgtttcatcatcccggattgaacctttccttcaggagctggagaataaccttgagatcatatcggcaacagttcatgacagggtccggacacgtgtaatcactaatgtaatgaaagcctcttttgatggattcttgttgattttgttggcgggaggaccctctcgtgctttttcacttgctgatgctgcaattatagatgaagatttgaagttcctaatggatctattctggtctgatggggatgggttaccgactgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90863" stop="92056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91163" g_stop="91756" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E456811" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91163" e_stop="91756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCT</genome_strand>
        <mrna_strand>GAAAGAGAGACCTCCTATGGTTTCGTATAGGAAATCTCAGAGTGGGACCACTAATGGAGATGATTCTTTCAGTATACCTCAGCTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCCCAACTGAGGGATAATACGCGTGCTCATGAGGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCCGGATTGAACCTTTCCTTCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGGACACGTGTAATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCGGGAGGACCCTCTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTGAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206310" ref_strand="-" ref_description="SGN-E206310 [cLEC-23-C8]">
      <seq>agttcatgacagggtccggacacgtgctatcattaatgtaatgaaagcctcttttgatggattcttgttgattttgttggctggaggaccttgtcgtgctttttcacttgctgatgctgcaattatagatgaagatttaaagttcctaatggatctattctggtctgatggggatgggttaccgactgaccttatagacaagtattcagctactttgaaaggcattcttcctcttttccatactgataccgctattctgattgagcaacttgaacatgccactgaagataattttggcacttcagctaaatccagacttcccttgcctcctacatcaggtaactggagtccaactgagctcagcaccattatgcgtgttctgtgttatcgaaatgataaaattgcttctaagtttctaaagaagaaatacaacttgccaaagaaactgtgattattttgtacaccatgtgtatcttaggttaggttgttcataatagttgtggtgtgattattttgtacagaatacttctgatttattgaggcatatcatatgactgttagcaagttaaaagaagaaaagaattggtcagtttgtacagcaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91265" stop="92468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91565" g_stop="92162" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="620"/>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E206310" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206310" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91565" e_stop="92162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCACTTCAGCTAAATCCAGACTTCCCTTGCCTCCTACATCAGGTAACTGGAGTCCAACTGAGCTCAGCACCATTATGCGTGTTCTGTGTTATCGAAATGATAAAATTGCTTCTAAGTTTCTAAAGAAGAAATACAACTTGCCAAAGAAACTGTGATTATTTTGTACACCATGTGTATCTTAGGTTAGGTTGTTCATAATAGTTGTGGTGTGATTATTTTGTACAGAATACTTCTGATTTATTGAGGCATATCATATGACTGTTAGCAAGTTAAAAGAAGAAAAGAATTGGTCAGTTTGTAAA</genome_strand>
        <mrna_strand>AGTTCATGACAGGGTCCGGACACGTGCTATCATTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCACTTCAGCTAAATCCAGACTTCCCTTGCCTCCTACATCAGGTAACTGGAGTCCAACTGAGCTCAGCACCATTATGCGTGTTCTGTGTTATCGAAATGATAAAATTGCTTCTAAGTTTCTAAAGAAGAAATACAACTTGCCAAAGAAACTGTGATTATTTTGTACACCATGTGTATCTTAGGTTAGGTTGTTCATAATAGTTGTGGTGTGATTATTTTGTACAGAATACTTCTGATTTATTGAGGCATATCATATGACTGTTAGCAAGTTAAAAGAAGAAAAGAATTGGTCAGTTTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110809" stop="112121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111109" g_stop="111821" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111109" e_stop="111821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110809" stop="112004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111109" g_stop="111704" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111109" e_stop="111704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAGAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110809" stop="111934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111109" g_stop="111634" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111109" e_stop="111634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110880" stop="112158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111180" g_stop="111859" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111180" e_stop="111859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTT</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="110880" stop="111838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111180" g_stop="111538" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111180" e_stop="111538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="111329" stop="112587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111629" g_stop="112287" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111629" e_stop="112287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTTCCCGGTTCAAGATCGATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCAGAGACTATCAAAACCGACTCAATCGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAGGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTGTTACTCCCCACAAAAGTTACCAAACAAGACCTACATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="111399" stop="112759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111698" g_stop="112459" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111698" e_stop="112459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTTCCCGGTTCAAGATCGATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCAGAGACTATCAAAACCGACTCAATCGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAGGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTGTTACTCCCCACAAAAGTTACCAAACAAGACCTACATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGGTTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="111399" stop="112658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111698" g_stop="112358" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111698" e_stop="112358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTTCCCGGTTCAAGATCGATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCAGAGACTATCAAAACCGACTCAATCGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAGGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTGTTACTCCCCACAAAAGTTACCAAACAAGACCTACATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="113424" stop="111417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113124" g_stop="112952" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112951" i_stop="112209" i_length="743">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112208" g_stop="111724" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="658" r_length="485" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113124" e_stop="112952"/>
          <exon e_start="112208" e_stop="111724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGTAGGATGTCGGTTACTGCATATGAGGTTAAGTTTCGTGAACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGATAGAGGTAGAGGTGGTGAAGCCAGATGACTTCACCATGGCAACTCCATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATTGCTCTTACTCTAGAGGACAAGGTTCAGGAGGTTACTCAGTCCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATCAAGAGGTTTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGCTAGAGGTGGTTATGGAAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAGGTGAGAGGGCCCATTGTTACACTTTCCCGGGGAGATCTGGGGCGAAGACATCTGATGCTGTCATCACAGGTAACCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATGTAGGTCTTGTTTGGTAACTTTTGTGGGGAGTAACACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGTCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCAATCCGGTTCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCCTTCTTGGCACATCTCAAGGATGACACTACTCAAGTACCCTCGATTGAGTCGGTTTTGATAGTCTCTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATCGATCTTGAACCGGGAACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATCAGACCAAGTGCATCTCCTTGGGGTGCTCTAGTTTTGTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="111801" stop="112727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112101" g_stop="112431" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112101" e_stop="112431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTGTTACTCCCCACAAAAGTTACCAAACAAGACCTACATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="112728" stop="114047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113028" g_stop="113747" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113028" e_stop="113747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCGCTCTTGTGGACTGAAACAAAGCTGAGTGGCATATCTGGAAAGTTCACGAAACTTAACCTCATATGCAGTAACCGACATCCTACCTTTCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTAAAGATTGGGGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTTTGCACTTGTTCAATTTCCCCTTCCTCCCCTTCTATTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="112731" stop="113994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113031" g_stop="113694" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113031" e_stop="113694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGCTGAGTGGCATATCTGGAAAGTTCACGAAACTTAACCTCATATGCAGTAACCGACATCCTACCTTTCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTAAAGATTGGGGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTTTGCACTTGTTCAATTTCCCCTTCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCA-TTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="113086" stop="114119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113386" g_stop="113818" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113386" e_stop="113818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTAAAGATTGGGGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTTTGCACTTGTTCAATTTCCCCTTCCTCCCCTTCTATTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTTAGGTGCTCGTCCTTTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="115060" stop="114226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114760" g_stop="114526" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114760" e_stop="114526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCTCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGCTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGT-GTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544009" ref_strand="+" ref_description="SGN-E544009 [TUS-66-B23](-)">
      <seq>ggcataccttagatccgagtgaatagaagatatatattctgtgtagatcacttctaggcagacctctgctttctctattctcagaaaacgtacagatgaaacactaatcgatgagatctggcctgggttttgctgctaggaagacctgtgctttctcatttttggatgagagctttactaagatcgttgtgagggaagattgttgttagcttggtaaaatctctgctaaggttgttcacttgtttgatttcacaatatcttttgggaaataaactgaagtttcttttctttgttttatttttcttttaaaattttaatgaatagtgaaattttaggcggccaattttggtgaaactatgaagttcccgcctttcaatatatttcaaagacgccttaatttttaatttgtgaccagttaccactttctctagagatcgtatttagagccttcacgataacatacggaactaaagacctaaataaaatctcgtcccaatatatgtacttttagagacgggattattaactcgtccctaaatattggtcttaaataaagctttctcttgtagtgaagttttgtataatgtaaagttgtgaactaaaaattactttgaagtgtgaataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121178" stop="119951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120878" g_stop="120229" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E544009" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120878" e_stop="120229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAGCGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACTAAAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTTGTTCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATCACTTTGAAGTGTGAATTGAAGGCTAAAGAATAAAGATAGTGA</genome_strand>
        <mrna_strand>GGCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAACGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACT-AAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTCGTCCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATTACTTTGAAGTGTGAATAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544010" ref_strand="+" ref_description="SGN-E544010 [TUS-66-B23]">
      <seq>ggcataccttagatccgagtgaatagaagatatatattctgtgtagatcacttctaggcagacctctgctttctctattctcagaaaacgtacagatgaaacactaatcgatgagatctggcctgggttttgctgctaggaagacctgtgctttctcatttttggatgagagctttactaagatcgttgtgagggaagattgttgttagcttggtaaaatctctgctaaggttgttcacttgtttgatttcacaatatcttttgggaaataaactgaagtttcttttctttgttttatttttcttttaaaattttaatgaatagtgaaattttaggcggccaattttggtgaaactatgaagttcccgcctttcaatatatttcaaagacgccttaatttttaatttgtgaccagttaccactttctctagagatcgtatttagagccttcacgataacatacggaactaaagacctaaataaaatctcgtcccaatatatgtacttttagagacgggattattaactcgtccctaaatattggtcttaaataaagctttctcttgtagtgaagttttgtataatgtaaagttgtgaactaaaaattactttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121178" stop="119961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120878" g_stop="120261" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E544010" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120878" e_stop="120261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAGCGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACTAAAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTTGTTCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATCACTTTGAAGT</genome_strand>
        <mrna_strand>GGCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAACGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACT-AAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTCGTCCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATTACTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305479" ref_strand="+" ref_description="SGN-E305479 [cLEX-15-P19]">
      <seq>gcataccttagatccgagtgaatagaagatatatattctgtgtagatcacttctaggcagacctctgctttctctattctcagaaaacgtacagatgaaacactaatcgatgagatctggcctgggttttgctgctaggaagacctgtgctttctcatttttggatgagagctttactaagatcgttgtgagggaagattgttgttagcttggtaaaatctctgctaaggttgttcacttgtttgatttcacaatatcttttgggaaataaactgaagtttcttttctttgttttatttttcttttaaaattttaatgaatagtgaaattttaggcggccaattttggtgaaactatgaagttcccgcctttcaatatatttcaaagacgccttaatttttaatttgtgaccagttaccactttctctagagatcgtatttagagccttcacgataacatacggaactaaagacctaaataaaatctcgtcccaatatatgtacttttagagacgggattattaactcgtccctaaatattggtcttaaataaagctttctcttgtagtgaagttttgtataatgtaaagttgtgaactaaaaattactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121177" stop="119965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120877" g_stop="120265" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E305479" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120877" e_stop="120265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAGCGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACTAAAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTTGTTCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATCACTTTG</genome_strand>
        <mrna_strand>GCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAACGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACT-AAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTCGTCCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539306" ref_strand="-" ref_description="SGN-E539306 [TUS-58-P23]">
      <seq>ttttttttttaacaaaagaaaagaaaatagataaatgaatgaggtgtctgttgggaaaacgcagacgagcacaaaaatatatatgataaaaataatggaaataaaataggaaaataacgacaccaagaattttacgtggaaacccttctgaataagggaaaaaatcacgagccgagaggagcaactgatattactataataaggaattttacattgtgtagtcacgaatacaatactcaaagtgaatactacacactcaaaaggaacaacactcttttgatttccgtcttactaaaatatcgctcacattctattattcttcacacactattttcttgtatagtctatgaaatacctcactttgctctcaacatggattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121623" stop="128334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127492" g_stop="127532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.683"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127533" i_stop="127694" i_length="162">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.846" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127695" g_stop="128034" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="382" r_length="341" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E539306" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539306" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127492" e_stop="127532"/>
          <exon e_start="127695" e_stop="128034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTGTAAAAAGTAGTGCCATAAAATAAAGCAATGGTTGGTCAAGGGGATTAGAAATGGAAAGGGTTATATTTGTTCATTTTATAATTAAACAAAAGTTATATTTATCATTGTTACATTTTTCAAATAAATATTACTATTAAAAATATAAAACTTATCAATAATCTCTAACTAAACCGTCACTAATTTTTTTTTTAGCTAAAT-TGTTGGGAAAACGCGGACAAGCACTAAAGTATATATGGTAAAATTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAACCACGGGCCAAGAGGAGCAACTGATATTACTATAGTAAGGAATTTTACACTGTGTATTCACGAATACAACACTCAAAGTGACTACTACACACTCAAAAGGAACAACACTCTTTTGGTTTCCGTCTTACTAAAATATCGCTCACACTTTATTTTTCTTCACAGACTATTTTCTTATATAGTCTATGGAATACCTCACTTTGCTCTCAAAATGGTTTTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTAACAAAAGAAAAGAAAATAGATAAATGAATG..................................................................................................................................................................AGGTGTCTGTTGGGAAAACGCAGACGAGCACAAAAATATATATGATAAAAATAATGGAAATAAAATAGGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAATCACGAGCCGAGAGGAGCAACTGATATTACTATAATAAGGAATTTTACATTGTGTAGTCACGAATACAATACTCAAAGTGAATACTACACACTCAAAAGGAACAACACTCTTTTGATTTCCGTCTTACTAAAATATCGCTCACATTCTATTATTCTTCACACACTATTTTCTTGTATAGTCTATGAAATACCTCACTTTGCTCTCAACATGGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539307" ref_strand="-" ref_description="SGN-E539307 [TUS-58-P24]">
      <seq>ttttttttttaacaaaagaaaagaaaatagataaatgaatgaggtgtctgttgggaaaacgcagacgagcacaaaaatatatatgataaaaataatggaaataaaataggaaaataacgacaccaagaattttacgtggaaacccttctgaataagggaaaaaatcacgagccgagaggagcaactgatattactataataaggaattttacattgtgtagtcacgaatacaatactcaaagtgaatactacacactcaaaaggaacaacactcttttgatttccgtcttactaaaatatcgctcacattctattattcttcacacactattttcttgtatagtctatgaaatacctcactttgctctcaacatggattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121623" stop="128334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127492" g_stop="127532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.683"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127533" i_stop="127694" i_length="162">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.846" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127695" g_stop="128034" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="382" r_length="341" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E539307" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127492" e_stop="127532"/>
          <exon e_start="127695" e_stop="128034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTGTAAAAAGTAGTGCCATAAAATAAAGCAATGGTTGGTCAAGGGGATTAGAAATGGAAAGGGTTATATTTGTTCATTTTATAATTAAACAAAAGTTATATTTATCATTGTTACATTTTTCAAATAAATATTACTATTAAAAATATAAAACTTATCAATAATCTCTAACTAAACCGTCACTAATTTTTTTTTTAGCTAAAT-TGTTGGGAAAACGCGGACAAGCACTAAAGTATATATGGTAAAATTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAACCACGGGCCAAGAGGAGCAACTGATATTACTATAGTAAGGAATTTTACACTGTGTATTCACGAATACAACACTCAAAGTGACTACTACACACTCAAAAGGAACAACACTCTTTTGGTTTCCGTCTTACTAAAATATCGCTCACACTTTATTTTTCTTCACAGACTATTTTCTTATATAGTCTATGGAATACCTCACTTTGCTCTCAAAATGGTTTTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTAACAAAAGAAAAGAAAATAGATAAATGAATG..................................................................................................................................................................AGGTGTCTGTTGGGAAAACGCAGACGAGCACAAAAATATATATGATAAAAATAATGGAAATAAAATAGGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAATCACGAGCCGAGAGGAGCAACTGATATTACTATAATAAGGAATTTTACATTGTGTAGTCACGAATACAATACTCAAAGTGAATACTACACACTCAAAAGGAACAACACTCTTTTGATTTCCGTCTTACTAAAATATCGCTCACATTCTATTATTCTTCACACACTATTTTCTTGTATAGTCTATGAAATACCTCACTTTGCTCTCAACATGGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283859" ref_strand="-" ref_description="SGN-E283859 [cLER-13-G13]">
      <seq>ttttttttttaacaaaagaaaagaaaatagataaatgaatgaggtgtctgttgggaaaacgcagacgagcacaaaaatatatatgataaaaataatggaaataaaataggaaaataacgacaccaagaattttacgtggaaacccttctgaataagggaaaaaatcacgagccgagaggagcaactgatattactataataaggaattttacattgtgtagtcacgaatacaatactcaaagtgaatactacacactcaaaaggaacaacactcttttgatttccgtcttactaaaatatcgctcacattctattattcttcacacactattttcttgtatagtctatgaaatacctcactttgctctcaacatggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="121623" stop="128333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127492" g_stop="127532" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.683"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127533" i_stop="127694" i_length="162">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.846" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127695" g_stop="128033" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="381" r_length="340" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E283859" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283859" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127492" e_stop="127532"/>
          <exon e_start="127695" e_stop="128033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTGTAAAAAGTAGTGCCATAAAATAAAGCAATGGTTGGTCAAGGGGATTAGAAATGGAAAGGGTTATATTTGTTCATTTTATAATTAAACAAAAGTTATATTTATCATTGTTACATTTTTCAAATAAATATTACTATTAAAAATATAAAACTTATCAATAATCTCTAACTAAACCGTCACTAATTTTTTTTTTAGCTAAAT-TGTTGGGAAAACGCGGACAAGCACTAAAGTATATATGGTAAAATTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAACCACGGGCCAAGAGGAGCAACTGATATTACTATAGTAAGGAATTTTACACTGTGTATTCACGAATACAACACTCAAAGTGACTACTACACACTCAAAAGGAACAACACTCTTTTGGTTTCCGTCTTACTAAAATATCGCTCACACTTTATTTTTCTTCACAGACTATTTTCTTATATAGTCTATGGAATACCTCACTTTGCTCTCAAAATGGTTTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTAACAAAAGAAAAGAAAATAGATAAATGAATG..................................................................................................................................................................AGGTGTCTGTTGGGAAAACGCAGACGAGCACAAAAATATATATGATAAAAATAATGGAAATAAAATAGGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAATCACGAGCCGAGAGGAGCAACTGATATTACTATAATAAGGAATTTTACATTGTGTAGTCACGAATACAATACTCAAAGTGAATACTACACACTCAAAAGGAACAACACTCTTTTGATTTCCGTCTTACTAAAATATCGCTCACATTCTATTATTCTTCACACACTATTTTCTTGTATAGTCTATGAAATACCTCACTTTGCTCTCAACATGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="-" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="128333" stop="127527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128033" g_stop="127827" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128033" e_stop="127827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAAAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGAATACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334067" ref_strand="+" ref_description="SGN-E334067 [cTOD-24-H17]">
      <seq>tagagagagtaatccacaatctagttttttagtttgtgagaaaatagtgtgcaagtaatattattgttagttgtaagaaataaaagagtgttgagtagtagtattttgacactaccaagtttttcatcaatattattgtattactttttcgggtaacatatttacccattttaatatttggtgtcgttgttactctcttcctattgctaattagtttggatattatttagggtgattatcattttttccaacaacgtggtatcaaagtcatgacaaataatagttcgttgtcctttcaatacccctgtctcgcaagagaaaaatatgaaaaatggtgtctactaatgaaagttattcttggctctcaagatgtttaggatattgtaaacagagggtatacaaaacccgcaaatgaaaaaactttgccctccaatgaaaaggaggtcttgttaaagacaagaaagaaagatcaacacgccttcactcttatccatcaatgtttggatgatggcatgtttgagaaggtggctgatgcaaccacctcaaaagaagcgtgagagattttaaaaattcttttccatgagttgatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="129973" stop="131168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130273" g_stop="130868" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E334067" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130273" e_stop="130868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGTAATCCACAAACTA-CTTCTTAGTTTGTGAGAAAATAGTGTGCAAGTAATATTATTGTGAGTTGTAAGAAATAAAAGAGTGTTGAGTAGTAGTCTTTTGACACTACCAAGTTTTTCATTAATATTATTGTATTACTTATTCGGGTATCATATTTACCCATTTTAATATTTGGCGTTGTTGTTACTCTCTTCCTATTGCTATTTAAGTTGGACATTATCCTGGGTGTGATTATCAATTTGTCCAATAACGTGGTATCAGAGCCATGACAAATAATAGTCCGTTGTCTTTTCAATACCCCCGACTCAAAAGAGAAAATTACGAAAAATGATGTCTACGAATGAAAGTTATTCTTGGCTATCAAGATGCTTGGAATATTGTAGACAAAGGGTATACAAAACCCGCAAATGAGGAAACTTTGCCCTCAAATGAAAAGGAGGTATTGTTAAAGACAAGAAAGAAAGATCAACAAGCCCTCACTCTAATCCATCAATGTTTGGATGATGACATGTTTGAGAAGGTGACTGATGCAACCACCTCAAAAGAAGCGTTGAAGATTTCACAAAATTCTCTTCAATGAGTTGATAAAGT</genome_strand>
        <mrna_strand>TAGAGAGAGTAATCCACAATCTAGTTTTTTAGTTTGTGAGAAAATAGTGTGCAAGTAATATTATTGTTAGTTGTAAGAAATAAAAGAGTGTTGAGTAGTAGTATTTTGACACTACCAAGTTTTTCATCAATATTATTGTATTACTTTTTCGGGTAACATATTTACCCATTTTAATATTTGGTGTCGTTGTTACTCTCTTCCTATTGCTAATTAGTTTGGATATTAT-TTAGG-GTGATTATCATTTTTTCCAACAACGTGGTATCAAAGTCATGACAAATAATAGTTCGTTGTCCTTTCAATACCCCTGTCTCGCAAGAGAAAAATATGAAAAATGGTGTCTACTAATGAAAGTTATTCTTGGCTCTCAAGATGTTTAGGATATTGTAAACAGAGGGTATACAAAACCCGCAAATGAAAAAACTTTGCCCTCCAATGAAAAGGAGGTCTTGTTAAAGACAAGAAAGAAAGATCAACACGCCTTCACTCTTATCCATCAATGTTTGGATGATGGCATGTTTGAGAAGGTGGCTGATGCAACCACCTCAAAAGAAGCGTGAGAGATTTTA-AAAATTCTTTTCCATGAGTTGATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394139" ref_strand="+" ref_description="SGN-E394139 [TUS-40-P7]">
      <seq>gagagagtaatccacaaactacttcttaatttgtgaaaaaatagtgtgcaagtaatattattgtgagttgtaaaaataaaaaagtgttgaatagtagtcttttgacactaccaagtttttcatcaatatattgtattacttattcgggtatcatatttacccatttaatatttggtgtcgttgttactctcttcctattgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="129975" stop="130781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130275" g_stop="130481" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E394139" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130275" e_stop="130481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGTAATCCACAAACTACTTCTTAGTTTGTGAGAAAATAGTGTGCAAGTAATATTATTGTGAGTTGTAAGAAATAAAAGAGTGTTGAGTAGTAGTCTTTTGACACTACCAAGTTTTTCATTAATATTATTGTATTACTTATTCGGGTATCATATTTACCCATTTTAATATTTGGCGTTGTTGTTACTCTCTTCCTATTGCTAT</genome_strand>
        <mrna_strand>GAGAGAGTAATCCACAAACTACTTCTTAATTTGTGAAAAAATAGTGTGCAAGTAATATTATTGTGAGTTGTAA-AAATAAAAAAGTGTTGAATAGTAGTCTTTTGACACTACCAAGTTTTTCATCAATA-TATTGTATTACTTATTCGGGTATCATATTTACCCA-TTTAATATTTGGTGTCGTTGTTACTCTCTTCCTATTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207052" ref_strand="+" ref_description="SGN-E207052 [cLEC-30-E20]">
      <seq>ctatggtaatttcacgagaggaagaaactcaagacatagacgtagtttgtttggttcgatatgagttagaccagggatcgcacctttgaataagaaatcggaagttagggtttgtagaatgtcgagtggagtgatcccatccatcgttctgacatttggatctgcgtggtggtctagtaggactgccaccatgtcgggtgacaccatttccgatgcaatgtggaggggggttttgccagctggaccggccgggtggttcacgttggctgcaccgagctcgagtaacgctttcacaacctcccggctacaattctcgaccgcgtagtgtaacgcgatcgattcatcgagatttagtccttctcccatgaccataagtttgaccaattccacgtcggatgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0033G03-iLgg7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0033G03.1" temp_strand="+" temp_description="C05HBa0033G03.1  AC238787.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0033G03 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="149986" stop="150965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150290" g_stop="150665" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="404" r_length="380" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0033G03.1" gen_strand="+" ref_id="SGN-E207052" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0033G03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150290" e_stop="150665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCAAGACATAGACGTAGTTTATTTGGTTCGATATGAGTTAGACAAGGGATCACTCCTTTGAATAAAAGATCGGAATTTAGGGCTCTTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTTTGTCATTTGGATCCGCATGGTGGTCTAGTAGGACTACCACCATGTCGGGGAACAGCATTTCGGATGCAATGTGGAGGGGGG-TTTGCCAGCTGGACCAACCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCAGCTACAATTTTCAACCGCGTAGTGTAACGTGATCGATTCATCGAGA--TAGTCCTTCTCCC-TGACCATAAGTTTGACTAATTCCACGTCGGATGAGTCTA</genome_strand>
        <mrna_strand>AAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="375" PGL_stop="1167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="375" e_stop="1167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="375" e_stop="1167" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="375" stop="1040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="422" stop="1158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="651" stop="1167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATACTCATATGGAGAGGACGGGATTGGGTATCCTCTCTACCTGAAGACGGAGACAATCCAGAGATAAGGGAGGGCTCGGAATCTGTTAATGCTGCTAACACTAACCGATCCTTTGAAGTTCAAGTGGTTGCATCTACTGCGGGAAGTTCAAGTTTACCAGTTACAGAAGTGAATACTTACAATCTCAGTGCTAACACTTTTCCTCTGGGTGATGAAGATGCAGAGTATGTTAGAAAGGATGGAACGAAGGAAGATAGATCGGAGGATCACTATCCGGAATCTTCCAATAAGGTTTCTGTTACAACGACTGGGATAAGTAAAAGCGAAATCCCTCTGGTGTATGCAGGAGATACAGGTGACAATTCTAGAATTCTGAGTGACTGCCGTGAATGCAAAACAAGGTCGGATGATTCAGTGGTGGATAAAGAAAGTGAGTTTGAGAGCGCTTCAGATGATGTAGAAAACAAGTTTGATTCCTCATCTTTGGTTCCCTTGACTGGTTACAAGGTGCATTCTCTAACGGTAGATACGAACCAAAACTGTCAGCTGGTAAGCTCTATCACGCCGTGTACGGAAGGAATTTTACTACTTTGGAAGCAGGCTATTGAAAGTGGGAGTGCAGTTGTATTAAATGATTCTAGTATCGATGCTGACATTGTCTATCAAAGGGCTGTTGCTCTCTCTACATCTGTCCCACCTGGACCAGTTTTTCAGCATCAACCTAAGAAAGTATCAGTTCAAAGACGCGGGGAAGAGGAAATTGGTGATTTGGAGGTAGGATGCACCAAATT</gDNA_template>
            <first_frame> T  Y  S  Y  G  E  D  G  I  G  Y  P  L  Y  L  K  T  E  T  I  Q  R  *  G  R  A  R  N  L  L  M  L  L  T  L  T  D  P  L  K  F  K  W  L  H  L  L  R  E  V  Q  V  Y  Q  L  Q  K  *  I  L  T  I  S  V  L  T  L  F  L  W  V  M  K  M  Q  S  M  L  E  R  M  E  R  R  K  I  D  R  R  I  T  I  R  N  L  P  I  R  F  L  L  Q  R  L  G  *  V  K  A  K  S  L  W  C  M  Q  E  I  Q  V  T  I  L  E  F  *  V  T  A  V  N  A  K  Q  G  R  M  I  Q  W  W  I  K  K  V  S  L  R  A  L  Q  M  M  *  K  T  S  L  I  P  H  L  W  F  P  *  L  V  T  R  C  I  L  *  R  *  I  R  T  K  T  V  S  W  *  A  L  S  R  R  V  R  K  E  F  Y  Y  F  G  S  R  L  L  K  V  G  V  Q  L  Y  *  M  I  L  V  S  M  L  T  L  S  I  K  G  L  L  L  S  L  H  L  S  H  L  D  Q  F  F  S  I  N  L  R  K  Y  Q  F  K  D  A  G  K  R  K  L  V  I  W  R  *  D  A  P  N  </first_frame>
            <second_frame>  H  T  H  M  E  R  T  G  L  G  I  L  S  T  *  R  R  R  Q  S  R  D  K  G  G  L  G  I  C  *  C  C  *  H  *  P  I  L  *  S  S  S  G  C  I  Y  C  G  K  F  K  F  T  S  Y  R  S  E  Y  L  Q  S  Q  C  *  H  F  S  S  G  *  *  R  C  R  V  C  *  K  G  W  N  E  G  R  *  I  G  G  S  L  S  G  I  F  Q  *  G  F  C  Y  N  D  W  D  K  *  K  R  N  P  S  G  V  C  R  R  Y  R  *  Q  F  *  N  S  E  *  L  P  *  M  Q  N  K  V  G  *  F  S  G  G  *  R  K  *  V  *  E  R  F  R  *  C  R  K  Q  V  *  F  L  I  F  G  S  L  D  W  L  Q  G  A  F  S  N  G  R  Y  E  P  K  L  S  A  G  K  L  Y  H  A  V  Y  G  R  N  F  T  T  L  E  A  G  Y  *  K  W  E  C  S  C  I  K  *  F  *  Y  R  C  *  H  C  L  S  K  G  C  C  S  L  Y  I  C  P  T  W  T  S  F  S  A  S  T  *  E  S  I  S  S  K  T  R  G  R  G  N  W  *  F  G  G  R  M  H  Q  I </second_frame>
            <third_frame>   I  L  I  W  R  G  R  D  W  V  S  S  L  P  E  D  G  D  N  P  E  I  R  E  G  S  E  S  V  N  A  A  N  T  N  R  S  F  E  V  Q  V  V  A  S  T  A  G  S  S  S  L  P  V  T  E  V  N  T  Y  N  L  S  A  N  T  F  P  L  G  D  E  D  A  E  Y  V  R  K  D  G  T  K  E  D  R  S  E  D  H  Y  P  E  S  S  N  K  V  S  V  T  T  T  G  I  S  K  S  E  I  P  L  V  Y  A  G  D  T  G  D  N  S  R  I  L  S  D  C  R  E  C  K  T  R  S  D  D  S  V  V  D  K  E  S  E  F  E  S  A  S  D  D  V  E  N  K  F  D  S  S  S  L  V  P  L  T  G  Y  K  V  H  S  L  T  V  D  T  N  Q  N  C  Q  L  V  S  S  I  T  P  C  T  E  G  I  L  L  L  W  K  Q  A  I  E  S  G  S  A  V  V  L  N  D  S  S  I  D  A  D  I  V  Y  Q  R  A  V  A  L  S  T  S  V  P  P  G  P  V  F  Q  H  Q  P  K  K  V  S  V  Q  R  R  G  E  E  E  I  G  D  L  E  V  G  C  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="377" stop="1165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIWRGRDWVSSLPEDGDNPEIREGSESVNAANTNRSFEVQVVASTAGSSSLPVTEVNTYNLSANTFPLGDEDAEYVRKDGTKEDRSEDHYPESSNKVSVTTTGISKSEIPLVYAGDTGDNSRILSDCRECKTRSDDSVVDKESEFESASDDVENKFDSSSLVPLTGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVVLNDSSIDADIVYQRAVALSTSVPPGPVFQHQPKKVSVQRRGEEEIGDLEVGCTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1376" PGL_stop="784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1376" e_stop="784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="1376" e_stop="784" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1376" stop="784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1344" stop="950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTGACTTGATCGTTGAAATATTGTTATTCATTCATAAAGCTATGCTAGCAATTTGGCAAGCTCGTCTACTCCTAAGCTTCCTTTTGGTACTACATTCAGATAATCTTTTCGAATACCCTTCTTCTTCTCCTTTCTCGTACTCGTTGTTGAATTGACCTTTCTACTCGAAACAACAGTTTCTTTTCTCGAAGAAGCTGGAGTATCTAATTTGGTGCATCCTACCTCCAAATCACCAATTTCCTCTTCCCCGCGTCTTTGAACTGATACTTTCTTAGGTTGATGCTGAAAAACTGGTCCAGGTGGGACAGATGTAGAGAGAGCAACAGCCCTTTGATAGACAATGTCAGCATCGATACTAGAATCATTTAATACAACTGCACTCCCACTTTCAATAGCCTGCTTCCAAAGTAGTAAAATTCCTTCCGTACACGGCGTGATAGAGCTTACCAGCTGACAGTTTTGGTTCGTATCTACCGTTAGAGAATGCACCTTGTAACCAGTCAAGGGAACCAAAGATGAGGAATCAAACTTGTTTTCTACATCATCTGAAGCGCTCTCAAACTCACTTTCTTTATCCACCACTGAATCA</gDNA_template>
            <first_frame> I  I  D  L  I  V  E  I  L  L  F  I  H  K  A  M  L  A  I  W  Q  A  R  L  L  L  S  F  L  L  V  L  H  S  D  N  L  F  E  Y  P  S  S  S  P  F  S  Y  S  L  L  N  *  P  F  Y  S  K  Q  Q  F  L  F  S  K  K  L  E  Y  L  I  W  C  I  L  P  P  N  H  Q  F  P  L  P  R  V  F  E  L  I  L  S  *  V  D  A  E  K  L  V  Q  V  G  Q  M  *  R  E  Q  Q  P  F  D  R  Q  C  Q  H  R  Y  *  N  H  L  I  Q  L  H  S  H  F  Q  *  P  A  S  K  V  V  K  F  L  P  Y  T  A  *  *  S  L  P  A  D  S  F  G  S  Y  L  P  L  E  N  A  P  C  N  Q  S  R  E  P  K  M  R  N  Q  T  C  F  L  H  H  L  K  R  S  Q  T  H  F  L  Y  P  P  L  N   </first_frame>
            <second_frame>  *  L  T  *  S  L  K  Y  C  Y  S  F  I  K  L  C  *  Q  F  G  K  L  V  Y  S  *  A  S  F  W  Y  Y  I  Q  I  I  F  S  N  T  L  L  L  L  L  S  R  T  R  C  *  I  D  L  S  T  R  N  N  S  F  F  S  R  R  S  W  S  I  *  F  G  A  S  Y  L  Q  I  T  N  F  L  F  P  A  S  L  N  *  Y  F  L  R  L  M  L  K  N  W  S  R  W  D  R  C  R  E  S  N  S  P  L  I  D  N  V  S  I  D  T  R  I  I  *  Y  N  C  T  P  T  F  N  S  L  L  P  K  *  *  N  S  F  R  T  R  R  D  R  A  Y  Q  L  T  V  L  V  R  I  Y  R  *  R  M  H  L  V  T  S  Q  G  N  Q  R  *  G  I  K  L  V  F  Y  I  I  *  S  A  L  K  L  T  F  F  I  H  H  *  I  </second_frame>
            <third_frame>   N  *  L  D  R  *  N  I  V  I  H  S  *  S  Y  A  S  N  L  A  S  S  S  T  P  K  L  P  F  G  T  T  F  R  *  S  F  R  I  P  F  F  F  S  F  L  V  L  V  V  E  L  T  F  L  L  E  T  T  V  S  F  L  E  E  A  G  V  S  N  L  V  H  P  T  S  K  S  P  I  S  S  S  P  R  L  *  T  D  T  F  L  G  *  C  *  K  T  G  P  G  G  T  D  V  E  R  A  T  A  L  *  *  T  M  S  A  S  I  L  E  S  F  N  T  T  A  L  P  L  S  I  A  C  F  Q  S  S  K  I  P  S  V  H  G  V  I  E  L  T  S  *  Q  F  W  F  V  S  T  V  R  E  C  T  L  *  P  V  K  G  T  K  D  E  E  S  N  L  F  S  T  S  S  E  A  L  S  N  S  L  S  L  S  T  T  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0033G03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="2738" PGL_stop="2041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2738" e_stop="2293"/>
            <exon e_start="2216" e_stop="2041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.339" acc_prob="0.966" e_score="0.982"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="2738" e_stop="2293" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.339" acc_prob="0.966">
            <gDNA_intron_boundary i_start="2292" i_stop="2217" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="2216" e_stop="2041" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2738" stop="2293"/>
              <exon start="2216" stop="2041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2738" stop="2293"/>
              <exon start="2216" stop="2181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTATTGGTGGGCTTTTTCTACCTGAGACCCCAAACAGTCTCGTAGAACAGGGTAAATTACAGGAAGCAAGACAAGTATTAGAGAAAATTAGAGGTACCACAAAAGTTGATGCTGAGTTTGCGGATCTTAAAGATGCAAGTGATGCTGCGAGAGCCATAAAAGATCCATTCAGGAATCTCCTCAAGAGGAAAAACCGTCCCCAATTGGTAATAGCAGCTTTGGGGATCCCAGCATTCCAACAGCTTACCGGCATGAACTCCATTCTTTTCTACGCCCCTGTCATATTTCAGAGTTTAGGATTTGGCTCAGGAGCATCATTGTATTCATCTGCTATAACCAGTGGTGCACTTGTTCTAGCTACATTCATTTCAATGGCTTTTGTTGACAAGTTTGGAAGAAGAGCTTTCTTTCTGGAAGCTGGAGTTGAAATGATATGTGTTTTG : GTAGCGGTTGCTGTTACTCTGGCTTTGAAGTTTGGAGAAGGTGAAGAACTCCCAAAAGGAATTGGCATCTTCCTTGTAGTCATAATCTGCATATTTGTTGTCGCATATGGAAGGTCTTGGGGTCCCTTAGGTTGGCTGGTGCCAAGTGAACTATTTCCCCTGGAAACAAGATCTGC</gDNA_template>
            <first_frame> C  L  L  V  G  F  F  Y  L  R  P  Q  T  V  S  *  N  R  V  N  Y  R  K  Q  D  K  Y  *  R  K  L  E  V  P  Q  K  L  M  L  S  L  R  I  L  K  M  Q  V  M  L  R  E  P  *  K  I  H  S  G  I  S  S  R  G  K  T  V  P  N  W  *  *  Q  L  W  G  S  Q  H  S  N  S  L  P  A  *  T  P  F  F  S  T  P  L  S  Y  F  R  V  *  D  L  A  Q  E  H  H  C  I  H  L  L  *  P  V  V  H  L  F  *  L  H  S  F  Q  W  L  L  L  T  S  L  E  E  E  L  S  F  W  K  L  E  L  K  *  Y  V  F  W :   *  R  L  L  L  L  W  L  *  S  L  E  K  V  K  N  S  Q  K  E  L  A  S  S  L  *  S  *  S  A  Y  L  L  S  H  M  E  G  L  G  V  P  *  V  G  W  C  Q  V  N  Y  F  P  W  K  Q  D  L  </first_frame>
            <second_frame>  V  Y  W  W  A  F  S  T  *  D  P  K  Q  S  R  R  T  G  *  I  T  G  S  K  T  S  I  R  E  N  *  R  Y  H  K  S  *  C  *  V  C  G  S  *  R  C  K  *  C  C  E  S  H  K  R  S  I  Q  E  S  P  Q  E  E  K  P  S  P  I  G  N  S  S  F  G  D  P  S  I  P  T  A  Y  R  H  E  L  H  S  F  L  R  P  C  H  I  S  E  F  R  I  W  L  R  S  I  I  V  F  I  C  Y  N  Q  W  C  T  C  S  S  Y  I  H  F  N  G  F  C  *  Q  V  W  K  K  S  F  L  S  G  S  W  S  *  N  D  M  C  F   : G  S  G  C  C  Y  S  G  F  E  V  W  R  R  *  R  T  P  K  R  N  W  H  L  P  C  S  H  N  L  H  I  C  C  R  I  W  K  V  L  G  S  L  R  L  A  G  A  K  *  T  I  S  P  G  N  K  I  C </second_frame>
            <third_frame>   F  I  G  G  L  F  L  P  E  T  P  N  S  L  V  E  Q  G  K  L  Q  E  A  R  Q  V  L  E  K  I  R  G  T  T  K  V  D  A  E  F  A  D  L  K  D  A  S  D  A  A  R  A  I  K  D  P  F  R  N  L  L  K  R  K  N  R  P  Q  L  V  I  A  A  L  G  I  P  A  F  Q  Q  L  T  G  M  N  S  I  L  F  Y  A  P  V  I  F  Q  S  L  G  F  G  S  G  A  S  L  Y  S  S  A  I  T  S  G  A  L  V  L  A  T  F  I  S  M  A  F  V  D  K  F  G  R  R  A  F  F  L  E  A  G  V  E  M  I  C  V  L  :  V  A  V  A  V  T  L  A  L  K  F  G  E  G  E  E  L  P  K  G  I  G  I  F  L  V  V  I  I  C  I  F  V  V  A  Y  G  R  S  W  G  P  L  G  W  L  V  P  S  E  L  F  P  L  E  T  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2736" stop="2293"/>
                    <exon start="2216" stop="2043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIGGLFLPETPNSLVEQGKLQEARQVLEKIRGTTKVDAEFADLKDASDAARAIKDPFRNLLKRKNRPQLVIAALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGASLYSSAITSGALVLATFISMAFVDKFGRRAFFLEAGVEMICVLVAVAVTLALKFGEGEELPKGIGIFLVVIICIFVVAYGRSWGPLGWLVPSELFPLETRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53958" PGL_stop="57173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53958" e_stop="54128"/>
            <exon e_start="54839" e_stop="54978"/>
            <exon e_start="55090" e_stop="55336"/>
            <exon e_start="55549" e_stop="55653"/>
            <exon e_start="55791" e_stop="55919"/>
            <exon e_start="57124" e_stop="57173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.971"/>
          <exon-intron don_prob="0.336" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.992" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="53958" e_stop="54128" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54129" i_stop="54838" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54839" e_stop="54978" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.336" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55090" e_stop="55336" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.698" acc_prob="0.989">
            <gDNA_intron_boundary i_start="55337" i_stop="55548" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55549" e_stop="55653" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.938">
            <gDNA_intron_boundary i_start="55654" i_stop="55790" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="55791" e_stop="55919" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.903" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55920" i_stop="57123" i_length="1204"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57124" e_stop="57173" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53958" stop="54128"/>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54073" stop="54128"/>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55336"/>
              <exon start="55549" stop="55653"/>
              <exon start="55791" stop="55896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54934" stop="54978"/>
              <exon start="55090" stop="55336"/>
              <exon start="55549" stop="55653"/>
              <exon start="55791" stop="55919"/>
              <exon start="57124" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54935" stop="54978"/>
              <exon start="55090" stop="55336"/>
              <exon start="55549" stop="55653"/>
              <exon start="55791" stop="55840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCAATCTAAATCACAAGCAGATCGTGATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTAGATTTTGGCTATATTTATAATAGGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTAT : GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG : AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGG : GTTGATGCTTCCAGTATATGGTCTGAGATTCACTTGGAAACTTACGTTGGCATCTTGGAGGTGTTTCGTATCTCATATCAGATGTGCTCTAGTTCAAGTTCAGAG : TGTTATATCCCGTGTACGTACAACTTTGCGTGGGTCTTCTGATGACATTGGGTGGTTGCAACAAGCTCCTGAAATGGCTCCTGTTGTTGATGGTTCAGCTAGATTTAGAGAACTACTACAAGGTATTAG : GAATGGACAGCACACACTGCCCGATTCTTTTGTTTATCTACTGATTCCAG</gDNA_template>
            <first_frame> F  P  I  *  I  T  S  R  S  *  *  Y  Y  S  F  F  I  L  V  N  L  C  F  I  G  N  W  D  R  C  R  F  W  L  Y  L  *  *  D  A  F  G  F  L  I  N  S  W  P  F  I  L  N  S  H  S  Y  :  V  S  S  L  L  D  H  C  I  S  *  T  E  R  S  *  L  T  Y  L  L  M  Q  H  G  R  P  L  S  T  S  C  K  L  E  L  L  Y  S  P  A  I  C  S  I  Y  * :   G  S  Y  L  Q  R  S  T  W  V  V  R  I  F  S  *  F  W  W  S  A  C  K  L  Y  N  C  S  R  G  L  F  I  S  F  K  S  I  *  H  R  N  K  L  *  I  S  R  E  K  I  L  L  C  Q  *  *  L  A  C  K  F  I  L  R  N  C  K  K  *  S  K  L  W  R  F  Q  T  H  F  *  R  :  V  D  A  S  S  I  W  S  E  I  H  L  E  T  Y  V  G  I  L  E  V  F  R  I  S  Y  Q  M  C  S  S  S  S  S  E  :  C  Y  I  P  C  T  Y  N  F  A  W  V  F  *  *  H  W  V  V  A  T  S  S  *  N  G  S  C  C  *  W  F  S  *  I  *  R  T  T  T  R  Y  *  :  E  W  T  A  H  T  A  R  F  F  C  L  S  T  D  S   </first_frame>
            <second_frame>  F  Q  S  K  S  Q  A  D  R  D  S  T  I  H  F  L  Y  W  *  I  C  A  L  L  G  T  G  I  D  V  D  F  G  Y  I  Y  N  R  M  L  L  G  F  S  S  T  L  G  L  S  F  S  I  L  T  R  M :   F  R  L  Y  L  I  I  V  F  H  K  Q  K  D  L  D  *  L  I  F  *  C  N  M  D  D  P  F  L  H  L  A  S  L  S  S  Y  I  A  Q  Q  F  V  Q  F  I   : E  D  L  I  C  R  D  L  L  G  W  S  E  Y  L  V  D  F  G  G  L  L  V  N  F  T  T  V  P  E  A  C  S  F  P  S  R  V  S  D  T  G  T  S  F  R  F  H  G  R  R  S  S  Y  V  N  D  N  L  P  V  N  S  F  L  E  I  V  R  S  N  Q  S  Y  G  G  F  R  L  I  F  E  G :   L  M  L  P  V  Y  G  L  R  F  T  W  K  L  T  L  A  S  W  R  C  F  V  S  H  I  R  C  A  L  V  Q  V  Q  S :   V  I  S  R  V  R  T  T  L  R  G  S  S  D  D  I  G  W  L  Q  Q  A  P  E  M  A  P  V  V  D  G  S  A  R  F  R  E  L  L  Q  G  I  R :   N  G  Q  H  T  L  P  D  S  F  V  Y  L  L  I  P  </second_frame>
            <third_frame>   S  N  L  N  H  K  Q  I  V  I  V  L  F  I  F  Y  I  G  K  F  V  L  Y  W  E  L  G  *  M  *  I  L  A  I  F  I  I  G  C  F  W  V  S  H  Q  L  L  A  F  H  S  Q  F  S  L  V   : C  F  V  S  T  *  S  L  Y  F  I  N  R  K  I  L  I  N  L  S  S  D  A  T  W  T  T  P  F  Y  I  L  Q  A  *  A  L  I  *  P  S  N  L  F  N  L  L  :  R  I  L  S  A  E  I  Y  L  G  G  Q  N  I  *  L  I  L  V  V  C  L  *  T  L  Q  L  F  P  R  L  V  H  F  L  Q  E  Y  L  T  Q  E  Q  A  L  D  F  T  G  E  D  P  P  M  S  M  I  T  C  L  *  I  H  S  *  K  L  *  E  V  I  K  V  M  E  V  S  D  S  F  L  K   : G  *  C  F  Q  Y  M  V  *  D  S  L  G  N  L  R  W  H  L  G  G  V  S  Y  L  I  S  D  V  L  *  F  K  F  R   : V  L  Y  P  V  Y  V  Q  L  C  V  G  L  L  M  T  L  G  G  C  N  K  L  L  K  W  L  L  L  L  M  V  Q  L  D  L  E  N  Y  Y  K  V  L   : G  M  D  S  T  H  C  P  I  L  L  F  I  Y  *  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54903" stop="54978"/>
                    <exon start="55090" stop="55336"/>
                    <exon start="55549" stop="55653"/>
                    <exon start="55791" stop="55919"/>
                    <exon start="57124" stop="57172"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNMDDPFLHLASLSSYIAQQFVQFIEDLICRDLLGWSEYLVDFGGLLVNFTTVPEACSFPSRVSDTGTSFRFHGRRSSYVNDNLPVNSFLEIVRSNQSYGGFRLIFEGLMLPVYGLRFTWKLTLASWRCFVSHIRCALVQVQSVISRVRTTLRGSSDDIGWLQQAPEMAPVVDGSARFRELLQGIRNGQHTLPDSFVYLLIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53958" e_stop="54128"/>
            <exon e_start="54839" e_stop="54978"/>
            <exon e_start="55090" e_stop="55362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.336" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53958" e_stop="54128" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54129" i_stop="54838" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54839" e_stop="54978" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.336" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54979" i_stop="55089" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="55090" e_stop="55362" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53958" stop="54128"/>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53986" stop="54128"/>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54073" stop="54128"/>
              <exon start="54839" stop="54978"/>
              <exon start="55090" stop="55137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCAATCTAAATCACAAGCAGATCGTGATAGTACTATTCATTTTTTATATTGGTAAATTTGTGCTTTATTGGGAACTGGGATAGATGTAGATTTTGGCTATATTTATAATAGGATGCTTTTGGGTTTCTCATCAACTCTTGGCCTTTCATTCTCAATTCTCACTCGTAT : GTTTCGTCTCTACTTGATCATTGTATTTCATAAACAGAAAGATCTTGATTAACTTATCTTCTGATGCAACATGGACGACCCCTTTCTACATCTTGCAAGCTTGAGCTCTTATATAGCCCAGCAATTTGTTCAATTTATTG : AGGATCTTATCTGCAGAGATCTACTTGGGTGGTCAGAATATTTAGTTGATTTTGGTGGTCTGCTTGTAAACTTTACAACTGTTCCCGAGGCTTGTTCATTTCCTTCAAGAGTATCTGACACAGGAACAAGCTTTAGATTTCACGGGAGAAGATCCTCCTATGTCAATGATAACTTGCCTGTAAATTCATTCTTAGAAATTGTAAGAAGTAATCAAAGTTATGGAGGTTTCAGACTCATTTTTGAAGGGTAAACTTTTCATGTATATGCTTTTC</gDNA_template>
            <first_frame> F  P  I  *  I  T  S  R  S  *  *  Y  Y  S  F  F  I  L  V  N  L  C  F  I  G  N  W  D  R  C  R  F  W  L  Y  L  *  *  D  A  F  G  F  L  I  N  S  W  P  F  I  L  N  S  H  S  Y  :  V  S  S  L  L  D  H  C  I  S  *  T  E  R  S  *  L  T  Y  L  L  M  Q  H  G  R  P  L  S  T  S  C  K  L  E  L  L  Y  S  P  A  I  C  S  I  Y  * :   G  S  Y  L  Q  R  S  T  W  V  V  R  I  F  S  *  F  W  W  S  A  C  K  L  Y  N  C  S  R  G  L  F  I  S  F  K  S  I  *  H  R  N  K  L  *  I  S  R  E  K  I  L  L  C  Q  *  *  L  A  C  K  F  I  L  R  N  C  K  K  *  S  K  L  W  R  F  Q  T  H  F  *  R  V  N  F  S  C  I  C  F   </first_frame>
            <second_frame>  F  Q  S  K  S  Q  A  D  R  D  S  T  I  H  F  L  Y  W  *  I  C  A  L  L  G  T  G  I  D  V  D  F  G  Y  I  Y  N  R  M  L  L  G  F  S  S  T  L  G  L  S  F  S  I  L  T  R  M :   F  R  L  Y  L  I  I  V  F  H  K  Q  K  D  L  D  *  L  I  F  *  C  N  M  D  D  P  F  L  H  L  A  S  L  S  S  Y  I  A  Q  Q  F  V  Q  F  I   : E  D  L  I  C  R  D  L  L  G  W  S  E  Y  L  V  D  F  G  G  L  L  V  N  F  T  T  V  P  E  A  C  S  F  P  S  R  V  S  D  T  G  T  S  F  R  F  H  G  R  R  S  S  Y  V  N  D  N  L  P  V  N  S  F  L  E  I  V  R  S  N  Q  S  Y  G  G  F  R  L  I  F  E  G  *  T  F  H  V  Y  A  F  </second_frame>
            <third_frame>   S  N  L  N  H  K  Q  I  V  I  V  L  F  I  F  Y  I  G  K  F  V  L  Y  W  E  L  G  *  M  *  I  L  A  I  F  I  I  G  C  F  W  V  S  H  Q  L  L  A  F  H  S  Q  F  S  L  V   : C  F  V  S  T  *  S  L  Y  F  I  N  R  K  I  L  I  N  L  S  S  D  A  T  W  T  T  P  F  Y  I  L  Q  A  *  A  L  I  *  P  S  N  L  F  N  L  L  :  R  I  L  S  A  E  I  Y  L  G  G  Q  N  I  *  L  I  L  V  V  C  L  *  T  L  Q  L  F  P  R  L  V  H  F  L  Q  E  Y  L  T  Q  E  Q  A  L  D  F  T  G  E  D  P  P  M  S  M  I  T  C  L  *  I  H  S  *  K  L  *  E  V  I  K  V  M  E  V  S  D  S  F  L  K  G  K  L  F  M  Y  M  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54903" stop="54978"/>
                    <exon start="55090" stop="55340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNMDDPFLHLASLSSYIAQQFVQFIEDLICRDLLGWSEYLVDFGGLLVNFTTVPEACSFPSRVSDTGTSFRFHGRRSSYVNDNLPVNSFLEIVRSNQSYGGFRLIFEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59342" PGL_stop="59985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59342" e_stop="59985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="59342" e_stop="59985" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59342" stop="59985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59725" stop="59976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTGATATACGGGCATTAGAGGATCTAACATACGAAAAGCGAAAGGAGTTCTTAAAAAACCACAAGCTTCCCGATGATATTCCACTCATCTCCTTCCATTCTGAAGCAAGTATAGCACTGAATGTAATAGCAACAATGTCCCATATAGCACATGCAGAACTTCCGTGGCTACCTTTGCCCGGATTTGGTGACGATGAGTCGGAAAATGTGATCCAAGCAGGTTGTAAGGTGCCTGTCATAGTTCCTGTTTCTGCTGCACTGGCTCTTTGTGCTCTGCACCTGCAACTAAGGTATGGAGAGAAGAGTGATGGTCTAGTGACCTGTCGTGATGCTGAAGTTCCCGGCTCAGTTGTTGTAAAACCAGACATAAAGCTTGATCATGCTTGGATGGTTTATTCGTCGTGGAGGAAGGACCCAAATGAACCGGACGCTAGTGAAATGTGTGAGGCTCTCTTAACTATGCTTGTGGAACTCGGTATGAAACGAAAGGAAGTACTTTGTTAACTATGTGTGTGATGTTAGATCGAATCATTTGAACAATGAAGTTCCCTGATAAGTAGATGTATGAAACTGAAACATCAGATGTTTTTTCCAACCTACTCTGTCAAGATATGGTTTTGTTTTAGTTAGTACGTATTATCT</gDNA_template>
            <first_frame> R  V  I  Y  G  H  *  R  I  *  H  T  K  S  E  R  S  S  *  K  T  T  S  F  P  M  I  F  H  S  S  P  S  I  L  K  Q  V  *  H  *  M  *  *  Q  Q  C  P  I  *  H  M  Q  N  F  R  G  Y  L  C  P  D  L  V  T  M  S  R  K  M  *  S  K  Q  V  V  R  C  L  S  *  F  L  F  L  L  H  W  L  F  V  L  C  T  C  N  *  G  M  E  R  R  V  M  V  *  *  P  V  V  M  L  K  F  P  A  Q  L  L  *  N  Q  T  *  S  L  I  M  L  G  W  F  I  R  R  G  G  R  T  Q  M  N  R  T  L  V  K  C  V  R  L  S  *  L  C  L  W  N  S  V  *  N  E  R  K  Y  F  V  N  Y  V  C  D  V  R  S  N  H  L  N  N  E  V  P  *  *  V  D  V  *  N  *  N  I  R  C  F  F  Q  P  T  L  S  R  Y  G  F  V  L  V  S  T  Y  Y   </first_frame>
            <second_frame>  G  *  Y  T  G  I  R  G  S  N  I  R  K  A  K  G  V  L  K  K  P  Q  A  S  R  *  Y  S  T  H  L  L  P  F  *  S  K  Y  S  T  E  C  N  S  N  N  V  P  Y  S  T  C  R  T  S  V  A  T  F  A  R  I  W  *  R  *  V  G  K  C  D  P  S  R  L  *  G  A  C  H  S  S  C  F  C  C  T  G  S  L  C  S  A  P  A  T  K  V  W  R  E  E  *  W  S  S  D  L  S  *  C  *  S  S  R  L  S  C  C  K  T  R  H  K  A  *  S  C  L  D  G  L  F  V  V  E  E  G  P  K  *  T  G  R  *  *  N  V  *  G  S  L  N  Y  A  C  G  T  R  Y  E  T  K  G  S  T  L  L  T  M  C  V  M  L  D  R  I  I  *  T  M  K  F  P  D  K  *  M  Y  E  T  E  T  S  D  V  F  S  N  L  L  C  Q  D  M  V  L  F  *  L  V  R  I  I  </second_frame>
            <third_frame>   G  D  I  R  A  L  E  D  L  T  Y  E  K  R  K  E  F  L  K  N  H  K  L  P  D  D  I  P  L  I  S  F  H  S  E  A  S  I  A  L  N  V  I  A  T  M  S  H  I  A  H  A  E  L  P  W  L  P  L  P  G  F  G  D  D  E  S  E  N  V  I  Q  A  G  C  K  V  P  V  I  V  P  V  S  A  A  L  A  L  C  A  L  H  L  Q  L  R  Y  G  E  K  S  D  G  L  V  T  C  R  D  A  E  V  P  G  S  V  V  V  K  P  D  I  K  L  D  H  A  W  M  V  Y  S  S  W  R  K  D  P  N  E  P  D  A  S  E  M  C  E  A  L  L  T  M  L  V  E  L  G  M  K  R  K  E  V  L  C  *  L  C  V  *  C  *  I  E  S  F  E  Q  *  S  S  L  I  S  R  C  M  K  L  K  H  Q  M  F  F  P  T  Y  S  V  K  I  W  F  C  F  S  *  Y  V  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59344" stop="59847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDIRALEDLTYEKRKEFLKNHKLPDDIPLISFHSEASIALNVIATMSHIAHAELPWLPLPGFGDDESENVIQAGCKVPVIVPVSAALALCALHLQLRYGEKSDGLVTCRDAEVPGSVVVKPDIKLDHAWMVYSSWRKDPNEPDASEMCEALLTMLVELGMKRKEVLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59944" PGL_stop="59525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59944" e_stop="59525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="59944" e_stop="59525" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59944" stop="59525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAGGTTGGAAAAAACATCTGATGTTTCAGTTTCATACATCTACTTATCAGGGAACTTCATTGTTCAAATGATTCGATCTAACATCACACACATAGTTAACAAAGTACTTCCTTTCGTTTCATACCGAGTTCCACAAGCATAGTTAAGAGAGCCTCACACATTTCACTAGCGTCCGGTTCATTTGGGTCCTTCCTCCACGACGAATAAACCATCCAAGCATGATCAAGCTTTATGTCTGGTTTTACAACAACTGAGCCGGGAACTTCAGCATCACGACAGGTCACTAGACCATCACTCTTCTCTCCATACCTTAGTTGCAGGTGCAGAGCACAAAGAGCCAGTGCAGCAGAAACAGGAACTATGACAGGCACCTTACAACCTGCTTGGATCACATTTTCCGACTCATCGTCACCAAATC</gDNA_template>
            <first_frame> S  R  L  E  K  T  S  D  V  S  V  S  Y  I  Y  L  S  G  N  F  I  V  Q  M  I  R  S  N  I  T  H  I  V  N  K  V  L  P  F  V  S  Y  R  V  P  Q  A  *  L  R  E  P  H  T  F  H  *  R  P  V  H  L  G  P  S  S  T  T  N  K  P  S  K  H  D  Q  A  L  C  L  V  L  Q  Q  L  S  R  E  L  Q  H  H  D  R  S  L  D  H  H  S  S  L  H  T  L  V  A  G  A  E  H  K  E  P  V  Q  Q  K  Q  E  L  *  Q  A  P  Y  N  L  L  G  S  H  F  P  T  H  R  H  Q  I </first_frame>
            <second_frame>  V  G  W  K  K  H  L  M  F  Q  F  H  T  S  T  Y  Q  G  T  S  L  F  K  *  F  D  L  T  S  H  T  *  L  T  K  Y  F  L  S  F  H  T  E  F  H  K  H  S  *  E  S  L  T  H  F  T  S  V  R  F  I  W  V  L  P  P  R  R  I  N  H  P  S  M  I  K  L  Y  V  W  F  Y  N  N  *  A  G  N  F  S  I  T  T  G  H  *  T  I  T  L  L  S  I  P  *  L  Q  V  Q  S  T  K  S  Q  C  S  R  N  R  N  Y  D  R  H  L  T  T  C  L  D  H  I  F  R  L  I  V  T  K   </second_frame>
            <third_frame>   *  V  G  K  N  I  *  C  F  S  F  I  H  L  L  I  R  E  L  H  C  S  N  D  S  I  *  H  H  T  H  S  *  Q  S  T  S  F  R  F  I  P  S  S  T  S  I  V  K  R  A  S  H  I  S  L  A  S  G  S  F  G  S  F  L  H  D  E  *  T  I  Q  A  *  S  S  F  M  S  G  F  T  T  T  E  P  G  T  S  A  S  R  Q  V  T  R  P  S  L  F  S  P  Y  L  S  C  R  C  R  A  Q  R  A  S  A  A  E  T  G  T  M  T  G  T  L  Q  P  A  W  I  T  F  S  D  S  S  S  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59720" stop="59526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFMSGFTTTEPGTSASRQVTRPSLFSPYLSCRCRAQRASAAETGTMTGTLQPAWITFSDSSSPN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59773" stop="59579"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPVHLGPSSTTNKPSKHDQALCLVLQQLSRELQHHDRSLDHHSSLHTLVAGAEHKEPVQQKQEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="90866" PGL_stop="92162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90866" e_stop="91000"/>
            <exon e_start="91084" e_stop="92162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.467" acc_prob="0.994" e_score="0.956"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="90866" e_stop="91000" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.467" acc_prob="0.994">
            <gDNA_intron_boundary i_start="91001" i_stop="91083" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="91084" e_stop="92162" e_length="1079"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90866" stop="91000"/>
              <exon start="91084" stop="91545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91163" stop="91871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91163" stop="91756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91565" stop="92162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206310" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGCAGTATTGATGAGACTTTTGAAGCATTTTTTTTGTTACCGATACCTATGCATCCAGATTTGCTTCCAGAATTAATGAATGGTCTTGACAGATGCCTGCAGAACTACATATTGAAGGCTATATCTGGCTGTG : GATCTCGAAGTGCCTTTGTTCCGACTATGCCTGCTTTGACTAGATGCTCAACTGGGTCAAAATTCCGTGTGTTCAGGAAGAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCACTTCAGCTAAATCCAGACTTCCCTTGCCTCCTACATCAGGTAACTGGAGTCCAACTGAGCTCAGCACCATTATGCGTGTTCTGTGTTATCGAAATGATAAAATTGCTTCTAAGTTTCTAAAGAAGAAATACAACTTGCCAAAGAAACTGTGATTATTTTGTACACCATGTGTATCTTAGGTTAGGTTGTTCATAATAGTTGTGGTGTGATTATTTTGTACAGAATACTTCTGATTTATTGAGGCATATCATATGACTGTTAGCAAGTTAAAAGAAGAAAAGAATTGGTCAGTTTGTAAA</gDNA_template>
            <first_frame> Y  A  V  L  M  R  L  L  K  H  F  F  C  Y  R  Y  L  C  I  Q  I  C  F  Q  N  *  *  M  V  L  T  D  A  C  R  T  T  Y  *  R  L  Y  L  A  V  :  D  L  E  V  P  L  F  R  L  C  L  L  *  L  D  A  Q  L  G  Q  N  S  V  C  S  G  R  K  R  D  L  L  W  F  R  I  G  N  L  K  V  G  P  L  M  E  M  I  L  S  A  Y  L  S  C  V  S  V  *  I  L  C  I  P  Y  E  K  N  *  M  Y  L  R  K  G  Q  F  L  N  *  G  I  I  H  V  F  M  M  I  I  L  L  M  G  W  A  N  V  L  S  C  Q  *  L  L  V  W  K  G  S  S  S  F  L  K  Q  F  H  I  K  S  S  S  M  S  *  G  I  S  S  G  I  I  Y  M  *  Q  M  F  H  H  P  G  L  N  L  S  S  R  S  W  R  I  T  L  R  S  Y  R  Q  Q  F  M  T  G  S  A  H  V  L  S  L  M  *  *  K  P  L  L  M  D  S  C  *  F  C  W  L  E  D  L  V  V  L  F  H  L  L  M  L  Q  L  *  M  K  I  *  S  S  *  W  I  Y  S  G  L  M  G  M  G  Y  R  L  T  L  *  T  S  I  Q  L  L  *  K  A  F  F  L  F  S  I  L  I  P  L  F  *  L  S  N  L  N  M  P  L  K  I  I  L  A  L  Q  L  N  P  D  F  P  C  L  L  H  Q  V  T  G  V  Q  L  S  S  A  P  L  C  V  F  C  V  I  E  M  I  K  L  L  L  S  F  *  R  R  N  T  T  C  Q  R  N  C  D  Y  F  V  H  H  V  Y  L  R  L  G  C  S  *  *  L  W  C  D  Y  F  V  Q  N  T  S  D  L  L  R  H  I  I  *  L  L  A  S  *  K  K  K  R  I  G  Q  F  V   </first_frame>
            <second_frame>  T  Q  Y  *  *  D  F  *  S  I  F  F  V  T  D  T  Y  A  S  R  F  A  S  R  I  N  E  W  S  *  Q  M  P  A  E  L  H  I  E  G  Y  I  W  L  W :   I  S  K  C  L  C  S  D  Y  A  C  F  D  *  M  L  N  W  V  K  I  P  C  V  Q  E  E  R  E  I  S  Y  G  S  V  *  E  I  S  K  W  D  H  *  W  R  *  F  F  Q  H  T  S  V  V  C  P  Y  K  Y  F  A  F  H  T  K  R  I  R  C  T  *  E  K  D  N  F  S  I  E  G  *  Y  T  C  S  *  *  *  Y  C  *  W  V  G  Q  M  F  *  A  V  S  S  F  L  F  G  R  D  P  A  A  F  *  S  N  F  I  *  N  H  L  P  *  V  E  A  Y  L  L  G  L  S  I  C  S  R  C  F  I  I  Q  D  *  T  F  P  P  G  A  G  E  *  P  *  D  H  I  G  N  S  S  *  Q  G  P  H  T  C  Y  H  *  C  N  E  S  L  F  *  W  I  L  V  D  F  V  G  W  R  T  L  S  C  F  F  T  C  *  C  C  N  Y  R  *  R  F  K  V  P  N  G  S  I  L  V  *  W  G  W  V  T  D  *  P  Y  R  Q  V  F  S  Y  F  E  R  H  S  S  S  F  P  Y  *  Y  R  Y  S  D  *  A  T  *  T  C  H  *  R  *  F  W  H  F  S  *  I  Q  T  S  L  A  S  Y  I  R  *  L  E  S  N  *  A  Q  H  H  Y  A  C  S  V  L  S  K  *  *  N  C  F  *  V  S  K  E  E  I  Q  L  A  K  E  T  V  I  I  L  Y  T  M  C  I  L  G  *  V  V  H  N  S  C  G  V  I  I  L  Y  R  I  L  L  I  Y  *  G  I  S  Y  D  C  *  Q  V  K  R  R  K  E  L  V  S  L  *  </second_frame>
            <third_frame>   R  S  I  D  E  T  F  E  A  F  F  L  L  P  I  P  M  H  P  D  L  L  P  E  L  M  N  G  L  D  R  C  L  Q  N  Y  I  L  K  A  I  S  G  C   : G  S  R  S  A  F  V  P  T  M  P  A  L  T  R  C  S  T  G  S  K  F  R  V  F  R  K  K  E  R  S  P  M  V  P  Y  R  K  S  Q  S  G  T  T  N  G  D  D  S  F  S  I  P  Q  L  C  V  R  I  N  T  L  H  S  I  R  K  E  L  D  V  L  E  K  R  T  I  S  Q  L  R  D  N  T  R  V  H  D  D  N  I  V  D  G  L  G  K  C  F  E  L  S  V  A  S  C  L  E  G  I  Q  Q  L  S  E  A  I  S  Y  K  I  I  F  H  E  L  R  H  I  F  W  D  Y  L  Y  V  A  D  V  S  S  S  R  I  E  P  F  L  Q  E  L  E  N  N  L  E  I  I  S  A  T  V  H  D  R  V  R  T  R  A  I  T  N  V  M  K  A  S  F  D  G  F  L  L  I  L  L  A  G  G  P  C  R  A  F  S  L  A  D  A  A  I  I  D  E  D  L  K  F  L  M  D  L  F  W  S  D  G  D  G  L  P  T  D  L  I  D  K  Y  S  A  T  L  K  G  I  L  P  L  F  H  T  D  T  A  I  L  I  E  Q  L  E  H  A  T  E  D  N  F  G  T  S  A  K  S  R  L  P  L  P  P  T  S  G  N  W  S  P  T  E  L  S  T  I  M  R  V  L  C  Y  R  N  D  K  I  A  S  K  F  L  K  K  K  Y  N  L  P  K  K  L  *  L  F  C  T  P  C  V  S  *  V  R  L  F  I  I  V  V  V  *  L  F  C  T  E  Y  F  *  F  I  E  A  Y  H  M  T  V  S  K  L  K  E  E  K  N  W  S  V  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90868" stop="91000"/>
                    <exon start="91084" stop="92015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSIDETFEAFFLLPIPMHPDLLPELMNGLDRCLQNYILKAISGCGSRSAFVPTMPALTRCSTGSKFRVFRKKERSPMVPYRKSQSGTTNGDDSFSIPQLCVRINTLHSIRKELDVLEKRTISQLRDNTRVHDDNIVDGLGKCFELSVASCLEGIQQLSEAISYKIIFHELRHIFWDYLYVADVSSSRIEPFLQELENNLEIISATVHDRVRTRAITNVMKASFDGFLLILLAGGPCRAFSLADAAIIDEDLKFLMDLFWSDGDGLPTDLIDKYSATLKGILPLFHTDTAILIEQLEHATEDNFGTSAKSRLPLPPTSGNWSPTELSTIMRVLCYRNDKIASKFLKKKYNLPKKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="111109" PGL_stop="112459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111109" e_stop="112459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="111109" e_stop="112459" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111109" stop="111821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111109" stop="111704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111109" stop="111634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111180" stop="111859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111180" stop="111538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111629" stop="112287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111698" stop="112459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111698" stop="112358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112101" stop="112431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACGCTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTGCTTTGAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGTCTTAAAAATCCCGTTCATCAAGCTCAGGAACGCAGCAGGGGCATTCGTAAGACCAAAAGAAATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAGAACTCCCATCCTTCTTCTTCACAAACAAAACTAGAGCACCCCAAGGAGATGCACTTGGTCTGATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTTCCCGGTTCAAGATCGATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCAGAGACTATCAAAACCGACTCAATCGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAGGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAAGAGATGATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGACAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTGTTACTCCCCACAAAAGTTACCAAACAAGACCTACATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGGTTACCTGTGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  A  L  R  V  Y  Q  Y  I  V  N  K  Y  D  H  K  E  I  Q  I  C  L  K  N  P  V  H  Q  A  Q  E  R  S  R  G  I  R  K  T  K  R  N  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  R  T  P  I  L  L  L  H  K  Q  N  *  S  T  P  R  R  C  T  W  S  D  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  S  R  F  K  I  D  A  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  R  D  Y  Q  N  R  L  N  R  G  Y  L  S  S  V  I  L  E  M  C  Q  E  G  *  T  P  F  T  N  H  F  L  S  T  K  K  R  D  D  T  N  R  I  G  S  V  V  A  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  T  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  V  T  P  H  K  S  Y  Q  T  R  P  T  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  V  T  C  D  D  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  R  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  *  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  V  L  K  I  P  F  I  K  L  R  N  A  A  G  A  F  V  R  P  K  E  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  E  L  P  S  F  F  F  T  N  K  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  E  T  I  K  T  D  S  I  E  G  T  *  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  R  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  H  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  A  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  C  F  E  S  I  S  V  Y  R  Q  *  I  R  S  Q  R  D  P  N  M  S  *  K  S  R  S  S  S  S  G  T  Q  Q  G  H  S  *  D  Q  K  K  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  F  P  V  Q  D  R  C  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  Q  R  L  S  K  P  T  Q  S  R  V  L  E  *  C  H  P  *  D  V  P  R  R  L  N  T  L  Y  *  P  F  S  *  H  E  E  K  R  *  Y  E  P  D  W  K  C  S  R  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  D  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  C  Y  S  P  Q  K  L  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  G  Y  L  *  *  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111274" stop="111612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLALRVYQYIVNKYDHKEIQICLKNPVHQAQERSRGIRKTKRNHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111814" stop="112014"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASSRFKIDAEVNIPIWWHTRKICREHIQKLRDYQNRLNRGYLSSVILEMCQEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="113124" PGL_stop="111724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113124" e_stop="112952"/>
            <exon e_start="112208" e_stop="111724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="113124" e_stop="112952" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112951" i_stop="112209" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="112208" e_stop="111724" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113124" stop="112952"/>
              <exon start="112208" stop="111724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGTAGGATGTCGGTTACTGCATATGAGGTTAAGTTTCGTGAACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGTCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCAATCCGGTTCGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCCTTCTTGGCACATCTCAAGGATGACACTACTCAAGTACCCTCGATTGAGTCGGTTTTGATAGTCTCTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATCGATCTTGAACCGGGAACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATCAGACCAAGTGCATCTCCTTGGGGTGCTCTAGTTTTGTTT</gDNA_template>
            <first_frame> E  R  *  D  V  G  Y  C  I  *  G  *  V  S  *  T  F  Q  I  C  H  S  A  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  S  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  S  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  R  L  H  F  Q  S  G  S  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  F  S  L  L  G  T  S  Q  G  *  H  Y  S  S  T  L  D  *  V  G  F  D  S  L  *  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  H  R  S  *  T  G  N  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  Q  T  K  C  I  S  L  G  C  S  S  F  V  </first_frame>
            <second_frame>  K  G  R  M  S  V  T  A  Y  E  V  K  F  R  E  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  C  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  L  I  V  S  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  L  V  L  F </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  N  F  P  D  M  P  L  S  F  V  S  V  H  K  S  G  F  T  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  Q  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  V  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  A  T  T  L  P  I  R  F  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  V  *  P  S  W  H  I  S  R  M  T  L  L  K  Y  P  R  L  S  R  F  *  *  S  L  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  A  S  I  L  N  R  E  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  S  D  Q  V  H  L  L  G  V  L  *  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113123" stop="112952"/>
                    <exon start="112208" stop="111724"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGRMSVTAYEVKFRELSRYATQLCFSPQERIHRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTCLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVLIVSEFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGALVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="113028" PGL_stop="113818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113028" e_stop="113818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="113028" e_stop="113818" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113028" stop="113747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113031" stop="113694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113386" stop="113818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAATCCGCTCTTGTGGACTGAAACAAAGCTGAGTGGCATATCTGGAAAGTTCACGAAACTTAACCTCATATGCAGTAACCGACATCCTACCTTTCTCTAGGCTCAAGAATTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTAAAGATTGGGGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTTTGCACTTGTTCAATTTCCCCTTCCTCCCCTTCTATTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTTAGGTGCTCGTCCTTTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> V  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  K  F  T  K  L  N  L  I  C  S  N  R  H  P  T  F  L  *  A  Q  E  F  I  S  F  P  I  P  Q  S  P  G  N  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  L  L  T  L  N  M  *  P  P  P  Y  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  K  D  W  G  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  N  F  P  F  L  P  F  Y  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  V  R  C  S  S  F  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </first_frame>
            <second_frame>  *  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  E  S  S  R  N  L  T  S  Y  A  V  T  D  I  L  P  F  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  C  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  I  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  I  S  P  S  S  P  S  I  T  T  S  S  V  G  G  G  V  T  A  L  V  L  D  G  L  G  A  R  P  F  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  A  E  W  H  I  W  K  V  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  S  L  G  S  R  I  H  L  F  S  Y  P  S  K  S  G  E  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  F  V  D  T  Q  Y  V  T  A  T  I  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  G  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  Q  F  P  L  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  Y  *  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113541" stop="113816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRGLTLIRQPTKISENLIDHLWGRLGWQSLILHLFNFPFLPFYYYFLSRWRSHRPSIRWVRCSSFSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113620" stop="113817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSISPSSPSITTSSVGGGVTALVLDGLGARPFPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="114760" PGL_stop="114526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114760" e_stop="114526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="114760" e_stop="114526" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114760" stop="114526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCTCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGCTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  S  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  M  L  S  D  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  Y  F  Y  C  F  L  L  V  I  C  </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  C  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  L  V  F  V  L  T  P  T  F  I  V  F  F  L  L  F  V </second_frame>
            <third_frame>   M  N  L  I  L  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  A  I  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  L  C  L  Y  *  P  L  L  L  L  F  S  S  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0033G03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="120878" PGL_stop="120229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120878" e_stop="120229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="120878" e_stop="120229" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120878" stop="120229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120878" stop="120261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120877" stop="120265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCATACCTTAGATCCGAGTGAATAGAAGATATATATTCTGTGTAGATCACTTCTAGGCAGACCTCTGCTTTCTCTATTCTCAGAAAGCGTACAGATGAAACACTAATCGATGAGATCTGGCCTGGGTTTTGCTGCTAGGAAGACCTGTGCTTTCTCATTTTTGGATGAGAGCTTTACTAAGATCGTTGTGAGGGAAGATTGTTGTTAGCTTGGTAAAATCTCTGCTAAGGTTGTTCACTTGTTTGATTTCACAATATCTTTTGGGAAATAAACTGAAGTTTCTTTTCTTTGTTTTATTTTTCTTTTAAAATTTTAATGAATAGTGAAATTTTAGGCGGCCAATTTTGGTGAAACTATGAAGTTCCCGCCTTTCAATATATTTCAAAGACGCCTTAATTTTTAATTTGTGACCAGTTACCACTTTCTCTAGAGATCGTATTTAGAGCCTTCACGATAACATACGGAACTAAAAGACCTAAATAAAATCTCGTCCCAATATATGTACTTTTAGAGACGGGATTATTAACTTGTTCCTAAATATTGGTCTTAAATAAAGCTTTCTCTTGTAGTGAAGTTTTGTATAATGTAAAGTTGTGAACTAAAAATCACTTTGAAGTGTGAATTGAAGGCTAAAGAATAAAGATAGTGA</gDNA_template>
            <first_frame> G  I  P  *  I  R  V  N  R  R  Y  I  F  C  V  D  H  F  *  A  D  L  C  F  L  Y  S  Q  K  A  Y  R  *  N  T  N  R  *  D  L  A  W  V  L  L  L  G  R  P  V  L  S  H  F  W  M  R  A  L  L  R  S  L  *  G  K  I  V  V  S  L  V  K  S  L  L  R  L  F  T  C  L  I  S  Q  Y  L  L  G  N  K  L  K  F  L  F  F  V  L  F  F  F  *  N  F  N  E  *  *  N  F  R  R  P  I  L  V  K  L  *  S  S  R  L  S  I  Y  F  K  D  A  L  I  F  N  L  *  P  V  T  T  F  S  R  D  R  I  *  S  L  H  D  N  I  R  N  *  K  T  *  I  K  S  R  P  N  I  C  T  F  R  D  G  I  I  N  L  F  L  N  I  G  L  K  *  S  F  L  L  *  *  S  F  V  *  C  K  V  V  N  *  K  S  L  *  S  V  N  *  R  L  K  N  K  D  S   </first_frame>
            <second_frame>  A  Y  L  R  S  E  *  I  E  D  I  Y  S  V  *  I  T  S  R  Q  T  S  A  F  S  I  L  R  K  R  T  D  E  T  L  I  D  E  I  W  P  G  F  C  C  *  E  D  L  C  F  L  I  F  G  *  E  L  Y  *  D  R  C  E  G  R  L  L  L  A  W  *  N  L  C  *  G  C  S  L  V  *  F  H  N  I  F  W  E  I  N  *  S  F  F  S  L  F  Y  F  S  F  K  I  L  M  N  S  E  I  L  G  G  Q  F  W  *  N  Y  E  V  P  A  F  Q  Y  I  S  K  T  P  *  F  L  I  C  D  Q  L  P  L  S  L  E  I  V  F  R  A  F  T  I  T  Y  G  T  K  R  P  K  *  N  L  V  P  I  Y  V  L  L  E  T  G  L  L  T  C  S  *  I  L  V  L  N  K  A  F  S  C  S  E  V  L  Y  N  V  K  L  *  T  K  N  H  F  E  V  *  I  E  G  *  R  I  K  I  V  </second_frame>
            <third_frame>   H  T  L  D  P  S  E  *  K  I  Y  I  L  C  R  S  L  L  G  R  P  L  L  S  L  F  S  E  S  V  Q  M  K  H  *  S  M  R  S  G  L  G  F  A  A  R  K  T  C  A  F  S  F  L  D  E  S  F  T  K  I  V  V  R  E  D  C  C  *  L  G  K  I  S  A  K  V  V  H  L  F  D  F  T  I  S  F  G  K  *  T  E  V  S  F  L  C  F  I  F  L  L  K  F  *  *  I  V  K  F  *  A  A  N  F  G  E  T  M  K  F  P  P  F  N  I  F  Q  R  R  L  N  F  *  F  V  T  S  Y  H  F  L  *  R  S  Y  L  E  P  S  R  *  H  T  E  L  K  D  L  N  K  I  S  S  Q  Y  M  Y  F  *  R  R  D  Y  *  L  V  P  K  Y  W  S  *  I  K  L  S  L  V  V  K  F  C  I  M  *  S  C  E  L  K  I  T  L  K  C  E  L  K  A  K  E  *  R  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0033G03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="127492" PGL_stop="128034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127492" e_stop="127532"/>
            <exon e_start="127695" e_stop="128034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.846" e_score="0.683"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.683">
            <gDNA_exon_boundary e_start="127492" e_stop="127532" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.846">
            <gDNA_intron_boundary i_start="127533" i_stop="127694" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="127695" e_stop="128034" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127492" stop="127532"/>
              <exon start="127695" stop="128034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539306" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127492" stop="127532"/>
              <exon start="127695" stop="128034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127492" stop="127532"/>
              <exon start="127695" stop="128033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283859" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTGTAAAAAGTAGTGCCATAAAATAAAGCAATG : CTAAATTGTTGGGAAAACGCGGACAAGCACTAAAGTATATATGGTAAAATTAATGGAAATAAAATGAGAAAATAACGACACCAAGAATTTTACGTGGAAACCCTTCTGAATAAGGGAAAAAACCACGGGCCAAGAGGAGCAACTGATATTACTATAGTAAGGAATTTTACACTGTGTATTCACGAATACAACACTCAAAGTGACTACTACACACTCAAAAGGAACAACACTCTTTTGGTTTCCGTCTTACTAAAATATCGCTCACACTTTATTTTTCTTCACAGACTATTTTCTTATATAGTCTATGGAATACCTCACTTTGCTCTCAAAATGGTTTTTC</gDNA_template>
            <first_frame> F  F  F  C  K  K  *  C  H  K  I  K  Q  C :   *  I  V  G  K  T  R  T  S  T  K  V  Y  M  V  K  L  M  E  I  K  *  E  N  N  D  T  K  N  F  T  W  K  P  F  *  I  R  E  K  T  T  G  Q  E  E  Q  L  I  L  L  *  *  G  I  L  H  C  V  F  T  N  T  T  L  K  V  T  T  T  H  S  K  G  T  T  L  F  W  F  P  S  Y  *  N  I  A  H  T  L  F  F  F  T  D  Y  F  L  I  *  S  M  E  Y  L  T  L  L  S  K  W  F  F </first_frame>
            <second_frame>  F  F  F  V  K  S  S  A  I  K  *  S  N   : A  K  L  L  G  K  R  G  Q  A  L  K  Y  I  W  *  N  *  W  K  *  N  E  K  I  T  T  P  R  I  L  R  G  N  P  S  E  *  G  K  K  P  R  A  K  R  S  N  *  Y  Y  Y  S  K  E  F  Y  T  V  Y  S  R  I  Q  H  S  K  *  L  L  H  T  Q  K  E  Q  H  S  F  G  F  R  L  T  K  I  S  L  T  L  Y  F  S  S  Q  T  I  F  L  Y  S  L  W  N  T  S  L  C  S  Q  N  G  F   </second_frame>
            <third_frame>   F  F  L  *  K  V  V  P  *  N  K  A  M  :  L  N  C  W  E  N  A  D  K  H  *  S  I  Y  G  K  I  N  G  N  K  M  R  K  *  R  H  Q  E  F  Y  V  E  T  L  L  N  K  G  K  N  H  G  P  R  G  A  T  D  I  T  I  V  R  N  F  T  L  C  I  H  E  Y  N  T  Q  S  D  Y  Y  T  L  K  R  N  N  T  L  L  V  S  V  L  L  K  Y  R  S  H  F  I  F  L  H  R  L  F  S  Y  I  V  Y  G  I  P  H  F  A  L  K  M  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127770" stop="128033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHQEFYVETLLNKGKNHGPRGATDITIVRNFTLCIHEYNTQSDYYTLKRNNTLLVSVLLKYRSHFIFLHRLFSYIVYGIPHFALKMVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="128033" PGL_stop="127827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128033" e_stop="127827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="128033" e_stop="127827" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128033" stop="127827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAAAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGAATACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  K  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  N  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  G  I  P  *  T  I  *  E  N  S  L  *  R  K  I  K  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  I  H  S  V  K  F  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  C  C  I  R  E  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0033G03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="130273" PGL_stop="130868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130273" e_stop="130868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="130273" e_stop="130868" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130273" stop="130868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130275" stop="130481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAGAGAGTAATCCACAAACTACTTCTTAGTTTGTGAGAAAATAGTGTGCAAGTAATATTATTGTGAGTTGTAAGAAATAAAAGAGTGTTGAGTAGTAGTCTTTTGACACTACCAAGTTTTTCATTAATATTATTGTATTACTTATTCGGGTATCATATTTACCCATTTTAATATTTGGCGTTGTTGTTACTCTCTTCCTATTGCTATTTAAGTTGGACATTATCCTGGGTGTGATTATCAATTTGTCCAATAACGTGGTATCAGAGCCATGACAAATAATAGTCCGTTGTCTTTTCAATACCCCCGACTCAAAAGAGAAAATTACGAAAAATGATGTCTACGAATGAAAGTTATTCTTGGCTATCAAGATGCTTGGAATATTGTAGACAAAGGGTATACAAAACCCGCAAATGAGGAAACTTTGCCCTCAAATGAAAAGGAGGTATTGTTAAAGACAAGAAAGAAAGATCAACAAGCCCTCACTCTAATCCATCAATGTTTGGATGATGACATGTTTGAGAAGGTGACTGATGCAACCACCTCAAAAGAAGCGTTGAAGATTTCACAAAATTCTCTTCAATGAGTTGATAAAGT</gDNA_template>
            <first_frame> *  R  E  *  S  T  N  Y  F  L  V  C  E  K  I  V  C  K  *  Y  Y  C  E  L  *  E  I  K  E  C  *  V  V  V  F  *  H  Y  Q  V  F  H  *  Y  Y  C  I  T  Y  S  G  I  I  F  T  H  F  N  I  W  R  C  C  Y  S  L  P  I  A  I  *  V  G  H  Y  P  G  C  D  Y  Q  F  V  Q  *  R  G  I  R  A  M  T  N  N  S  P  L  S  F  Q  Y  P  R  L  K  R  E  N  Y  E  K  *  C  L  R  M  K  V  I  L  G  Y  Q  D  A  W  N  I  V  D  K  G  Y  T  K  P  A  N  E  E  T  L  P  S  N  E  K  E  V  L  L  K  T  R  K  K  D  Q  Q  A  L  T  L  I  H  Q  C  L  D  D  D  M  F  E  K  V  T  D  A  T  T  S  K  E  A  L  K  I  S  Q  N  S  L  Q  *  V  D  K   </first_frame>
            <second_frame>  R  E  S  N  P  Q  T  T  S  *  F  V  R  K  *  C  A  S  N  I  I  V  S  C  K  K  *  K  S  V  E  *  *  S  F  D  T  T  K  F  F  I  N  I  I  V  L  L  I  R  V  S  Y  L  P  I  L  I  F  G  V  V  V  T  L  F  L  L  L  F  K  L  D  I  I  L  G  V  I  I  N  L  S  N  N  V  V  S  E  P  *  Q  I  I  V  R  C  L  F  N  T  P  D  S  K  E  K  I  T  K  N  D  V  Y  E  *  K  L  F  L  A  I  K  M  L  G  I  L  *  T  K  G  I  Q  N  P  Q  M  R  K  L  C  P  Q  M  K  R  R  Y  C  *  R  Q  E  R  K  I  N  K  P  S  L  *  S  I  N  V  W  M  M  T  C  L  R  R  *  L  M  Q  P  P  Q  K  K  R  *  R  F  H  K  I  L  F  N  E  L  I  K  </second_frame>
            <third_frame>   E  R  V  I  H  K  L  L  L  S  L  *  E  N  S  V  Q  V  I  L  L  *  V  V  R  N  K  R  V  L  S  S  S  L  L  T  L  P  S  F  S  L  I  L  L  Y  Y  L  F  G  Y  H  I  Y  P  F  *  Y  L  A  L  L  L  L  S  S  Y  C  Y  L  S  W  T  L  S  W  V  *  L  S  I  C  P  I  T  W  Y  Q  S  H  D  K  *  *  S  V  V  F  S  I  P  P  T  Q  K  R  K  L  R  K  M  M  S  T  N  E  S  Y  S  W  L  S  R  C  L  E  Y  C  R  Q  R  V  Y  K  T  R  K  *  G  N  F  A  L  K  *  K  G  G  I  V  K  D  K  K  E  R  S  T  S  P  H  S  N  P  S  M  F  G  *  *  H  V  *  E  G  D  *  C  N  H  L  K  R  S  V  E  D  F  T  K  F  S  S  M  S  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130609" stop="130857"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLRMKVILGYQDAWNIVDKGYTKPANEETLPSNEKEVLLKTRKKDQQALTLIHQCLDDDMFEKVTDATTSKEALKISQNSLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="150290" PGL_stop="150665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150290" e_stop="150665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="150290" e_stop="150665" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150290" stop="150665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTCAAGACATAGACGTAGTTTATTTGGTTCGATATGAGTTAGACAAGGGATCACTCCTTTGAATAAAAGATCGGAATTTAGGGCTCTTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTTTGTCATTTGGATCCGCATGGTGGTCTAGTAGGACTACCACCATGTCGGGGAACAGCATTTCGGATGCAATGTGGAGGGGGGTTTGCCAGCTGGACCAACCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCAGCTACAATTTTCAACCGCGTAGTGTAACGTGATCGATTCATCGAGATAGTCCTTCTCCCTGACCATAAGTTTGACTAATTCCACGTCGGATGAGTCTA</gDNA_template>
            <first_frame> *  L  K  T  *  T  *  F  I  W  F  D  M  S  *  T  R  D  H  S  F  E  *  K  I  G  I  *  G  S  *  N  V  E  W  S  D  P  I  H  R  F  V  I  W  I  R  M  V  V  *  *  D  Y  H  H  V  G  E  Q  H  F  G  C  N  V  E  G  G  L  P  A  G  P  T  G  W  F  T  L  A  A  P  S  S  S  N  A  F  T  T  S  Q  L  Q  F  S  T  A  *  C  N  V  I  D  S  S  R  *  S  F  S  L  T  I  S  L  T  N  S  T  S  D  E  S  </first_frame>
            <second_frame>  N  S  R  H  R  R  S  L  F  G  S  I  *  V  R  Q  G  I  T  P  L  N  K  R  S  E  F  R  A  L  R  M  S  S  G  V  I  P  S  I  V  L  S  F  G  S  A  W  W  S  S  R  T  T  T  M  S  G  N  S  I  S  D  A  M  W  R  G  V  C  Q  L  D  Q  P  G  G  S  R  W  L  H  R  A  R  V  T  L  S  Q  P  P  S  Y  N  F  Q  P  R  S  V  T  *  S  I  H  R  D  S  P  S  P  *  P  *  V  *  L  I  P  R  R  M  S  L </second_frame>
            <third_frame>   T  Q  D  I  D  V  V  Y  L  V  R  Y  E  L  D  K  G  S  L  L  *  I  K  D  R  N  L  G  L  L  E  C  R  V  E  *  S  H  P  S  F  C  H  L  D  P  H  G  G  L  V  G  L  P  P  C  R  G  T  A  F  R  M  Q  C  G  G  G  F  A  S  W  T  N  R  V  V  H  V  G  C  T  E  L  E  *  R  F  H  N  L  P  A  T  I  F  N  R  V  V  *  R  D  R  F  I  E  I  V  L  L  P  D  H  K  F  D  *  F  H  V  G  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0033G03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150330" stop="150599"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRQGITPLNKRSEFRALRMSSGVIPSIVLSFGSAWWSSRTTTMSGNSISDAMWRGVCQLDQPGGSRWLHRARVTLSQPPSYNFQPRSVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 329 chains have been computed
$ 
$ memory statistics:
$ 126928 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 2884 bytes was the average size of a spliced alignment
$ 23672 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1479 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 429 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:36:46
-->
