<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:40:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="510" stop="1334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="809" g_stop="1034" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="809" e_stop="1034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTTATTTTTCAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="519" stop="1461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="819" g_stop="1181" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="819" e_stop="1181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTTATTTTTCAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGAGTACAGTGAGGGGATTAAATTTCTTAAGAACACACAATAGCTTCTGTGGACTCGAATTATTTGTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTCATTCGTTAACCTTATAAATACAG</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="573" stop="1461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="872" g_stop="1203" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="872" e_stop="1203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGAGTACAGTGAGGGGATTAAATTTCTTAAGAACACACAATAGCTTCTGTGGACTCGAATTATTTGTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTCATTCGTTAACCTTATAAATACAGGTTACTATAAAAATAACAATAA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTG-T--TT-ATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232254" ref_strand="+" ref_description="SGN-E232254 [cLEL-5-L52](-)">
      <seq>gcatgtcttcaagtcttgcttactttgactcatacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgagaggaccgatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaactgctcaaagtttttatatgtttgttctggagcctattttgtacctgtaggccttggcggcttttctctcaaattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttcttttagataagcctcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7366" stop="6386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7066" g_stop="6695" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="401"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E232254" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7066" e_stop="6695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAAGCCTCTT</genome_strand>
        <mrna_strand>GCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCAAATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAAGCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232610" ref_strand="+" ref_description="SGN-E232610 [cLEL-5-L52](-)">
      <seq>cttcctgcaaatttagtccaagctcaaaagaattactttggtgctcatacttatgagaggaccaatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtccaagatctgagctctgctggttacattcctgtcattgacctaatttaataaagtgcatgttgcaaccgctcaaagttttcatatggttgttctggaacctattttgtacctgtaggccttgtcggcttttctctcatattatgtcttccaagttattggaacctgtcgaacaatcaaagagagtattatttcttcccttagataagcctctttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7319" stop="6386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7019" g_stop="6695" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="354"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E232610" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7019" e_stop="6695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAAGCCTCTT</genome_strand>
        <mrna_strand>CTTCCTGCAAATTTAGTCCAAGCTCAAAAGAATTACTTTGGTGCTCATACTTATGAGAGGACCAATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCCAAGATCTGAGCTCTGCTGGTTACATTCCTGTCATTGACCTAATTTAATAAAGTGCATGTTGCAACCGCTCAAAGTTTTCATATGGTTGTTCTGGAACCTATTTTGTACCTGTAGGCCTTGTCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGAACAATCAAAGAGAGTATTATTTCTTCCCTTAGATAAGCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713850" ref_strand="+" ref_description="SGN-E713850 [FB09DC12]">
      <seq>cgaatcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgcaaaggaggtagttgaacgccagtctgcctggcgcagagtggtctgcctagctataacctcgggtattagcacacctggcatgtcttcaagtcttgcttactttgactcatacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgagaggaccgatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaacttctcaaagtttttatgtttgttctggagcctattttgtacctgtaggccttggcggcttttctctcatattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7498" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7200" g_stop="6698" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E713850" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7200" e_stop="6698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAAGCCT</genome_strand>
        <mrna_strand>CGAATCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGCAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTTCTCAAAG-TTTT-TATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286179" ref_strand="-" ref_description="SGN-E286179 [cLES-11-C1]">
      <seq>tgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgcaaaggaggtagttgaacgccagtctgcctggcgaagagtggtctgcctagctataacttcgggtattagcacacctggcatgtcttcaagtcttgcttactttgactcatacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgagaggaccgatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaactgctcaaagtttttatatgtttgttctggagcctattttgtacctgtaggccttggcggcttttctctcatattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttcttttaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7524" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7224" g_stop="6702" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="537"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E286179" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7224" e_stop="6702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAA</genome_strand>
        <mrna_strand>TGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACTTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234068" ref_strand="+" ref_description="SGN-E234068 [cLEL-8-M18](-)">
      <seq>gtggtctgcctagctataacctcgggtattagcacacctggcatgtcttcaagtcttgcttactttgactcatacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgagaggaccgatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaactgctcaaagtttttatatgtttgttctggagcctattttgtacctgtaggccttggcggcttttctctcatattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttcttttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7406" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7106" g_stop="6702" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E234068" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7106" e_stop="6702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAA</genome_strand>
        <mrna_strand>GTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234311" ref_strand="+" ref_description="SGN-E234311 [cLEL-8-M18](-)">
      <seq>gggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaactgctcaaagtttttatatgtttgttctggagcctattttgtacctgtaggccttggcggcttttctctcatattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttcttttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7247" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6947" g_stop="6702" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="247" polyA_stop="263"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E234311" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6947" e_stop="6702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAA</genome_strand>
        <mrna_strand>GGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373754" ref_strand="+" ref_description="SGN-E373754 [TUS-31-E8]">
      <seq>aagcactctatgcttcgaaaatatgtagctatgctcagggaatgaatttgataagggcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaaaggtggttgcattatccgtgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgcaaaggaggtagttgaacgccagtctgcctggcgaagagtggtctgcctagctataacctcgggtattagcacacctggcatgtcttcaagtcttgcttactttgactcatacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgagaggaccgatatgcctgggtcatttcatactgagtggttcaagattgccaaacagtcgaagatctgagctctgctggttacattcttgtcattgacctaattgaataaagtgcatgttgtaactgctcaaagtttttatatgtttgttctggagcctattttgtacctgtaggctttggcggcttttctctcatattatgtcttccaagttattggaacctgtcgtacaatcaaagagagtattatttcttctttttaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7657" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7357" g_stop="6708" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="684"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E373754" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7357" e_stop="6708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTT</genome_strand>
        <mrna_strand>AAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCTTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373753" ref_strand="+" ref_description="SGN-E373753 [TUS-31-E8](-)">
      <seq>gaaaatatgtagctatgctcagggaatgaatttgataagggcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaaaggtggttgcattatccgtgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaaaagtttgcaaaggaggtagttgaacgccagtttgcctggcgaaaagtggtttgcctagctataacctcgggtattagcacacctggcatgttttcaagttttgcttactttgactcaaacaggagggaaaggcttcctgcaaatttagtccaagctcaaagggattactttggtgctcatacttatgaaaggaccgataagcctgggtcatttcatactgagtggttcaaaattgccaaacagtcgaaaatttgagctttgctggttacatttttgtcattgacctaattgaataaagggcatgttgtaactgctcaaagtttttatatgtttgttttggagcctattttgtacctgtaggctttggcggcttttttttcatattatgttttccaagttattggaacctgtcgtccaatcaaaaagaatattatttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7641" stop="6402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7341" g_stop="6708" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="669"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E373753" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7341" e_stop="6708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTT</genome_strand>
        <mrna_strand>GAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAAAGTTTGCAAAGGAGGTAGTTGAACGCCAGTTTGCCTGGCGAAAAGTGGTTTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTTTTCAAGTTTTGCTTACTTTGACTCAAACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAAAGGACCGATAAGCCTGGGTCATTTCATACTGAGTGGTTCAAAATTGCCAAACAGTCGAAAATTTGAGCTTTGCTGGTTACATTTTTGTCATTGACCTAATTGAATAAAGGGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTTTGGAGCCTATTTTGTACCTGTAGGCTTTGGCGGCTTTTTTTTCATATTATGTTTTCCAAGTTATTGGAACCTGTCGTCCAATCAAAAAGAATATTATTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699797" ref_strand="+" ref_description="SGN-E699797 [FA11BA02]">
      <seq>cctctgaaatctgttgggaagctctctaatgatgaattgcatccctccttctcagaatggaacaacggggagctccagagtcttcttgattgaaattacagctgatatatttggaatcaaggatgacaaagcggatggacatttggtagacaaggttttagacaaaactggaatgaaaggtactggtaaatggaccgttcagcaagctgctgaactgtcaattgctgctcctacaatagcctcatccctagattccagattccttagtggattgaaggatgaaagggtgcaagcagccaaagttttcaaatcttgtggggtcagcgacatccttgttgaacagtctgtggataagaagcaattgattgacgatgtcagaaaagcactctatgcttcgaaaatatgtagctatgctcagggaatgaatttgataagggcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaaaggtggttgcattatccgtgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgcaaaggaggtagttgaacgccagtctgcctggcgcagagtggtctgcctagctataacctcgggtattagcacccctggcatgtcttcaagtcttgcttactttgactcctacaggagggaaaggcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8034" stop="6714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7736" g_stop="7014" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E699797" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7736" e_stop="7014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGAAATCTGTTGGGAAGCTCTCTAATGATGAATTGCATCAAGCCTTCTCAGAATGGAACAACGGGGAGCTCCAGAG-CTTCTTGATTGAAATTACAGCTGATATATTTGGAATCAAGGATGACAAAGCGGATGGACATTTGGTAGACAAGGTTTTAGACAAAACTGGAATGAAAGGTACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCT</genome_strand>
        <mrna_strand>CCTCTGAAATCTGTTGGGAAGCTCTCTAATGATGAATTGCATCCCTCCTTCTCAGAATGGAACAACGGGGAGCTCCAGAGTCTTCTTGATTGAAATTACAGCTGATATATTTGGAATCAAGGATGACAAAGCGGATGGACATTTGGTAGACAAGGTTTTAGACAAAACTGGAATGAAAGGTACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGCAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACCCCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCCTACAGGAGGGAAAGGCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290527" ref_strand="+" ref_description="SGN-E290527 [cLES-20-C18]">
      <seq>aagcactctatgcttcgaaaatatgtagctatgctcagggaatgaatttgataagggcaaaaagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaaaggtgggtgcattatccgtgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7657" stop="6842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7357" g_stop="7142" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E290527" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7357" e_stop="7142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAA</genome_strand>
        <mrna_strand>AAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAAAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGGTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243666" ref_strand="+" ref_description="SGN-E243666 [cLED-34-D18]">
      <seq>tactggtaaatggaccgttcagcaagctgctgaactgtcaattgctgctcctacaatagcctcatccctagattccagattccttagtggattgaaggatgaaagggtgcaagcagccaaagttttcaaatcttgtggggtcagcgacatccttgttgaacagtctgtggataagaagcaattgattgacgatgtcagaaaagcactctatgcttcgaaaatatgtagctatgctcagggaatgaatttgataagggcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaaaggtggttgcattatccgtgcaatatttttggatcgtattaagcaagcttatgacagaaacgcagatctcgctaacctacttgtggatgaagagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7857" stop="6844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7557" g_stop="7144" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E243666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7557" e_stop="7144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGC</genome_strand>
        <mrna_strand>TACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693327" ref_strand="+" ref_description="SGN-E693327 [LH_Ea01A13](-)">
      <seq>gaaggatgaaagggtgcaagcagccaaagttttcaaatcttgtggggtcagcgacatcctttttgaacagtctgtggataagaagcaattgattgccgatgtcagaaaagcactctatgcttcgaaaatacgtagctatgctcagggaatgaatttgataaggtcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatttggaaaggtggttgcattatccgtgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7764" stop="6919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7464" g_stop="7219" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E693327" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7464" e_stop="7219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAAT</genome_strand>
        <mrna_strand>GAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTTTTGAACAGTCTGTGGATAAGAAGCAATTGATTGCCGATGTCAGAAAAGCACTCTATGCTTCGAAAATACGTAGCTATGCTCAGGGAATGAATTTGATAAGGTCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATTTGGAAAGGTGGTTGCATTATCCGTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321222" ref_strand="+" ref_description="SGN-E321222 [cTOB-13-N24]">
      <seq>tgaaatctgttgggaagctctctaatgatgaattgcatcaagccttctcagaatggaacaacggggagctccagagcttcttgattgaaattacagctgatatatttggaatcaaggatgacaaagcggatggacatttggtagacaaggttttagacaaaactggaatgaaaggtactggtaaatggaccgttcagcaagctgctgaactgtcaattgctgctcctacaatagcctcatccctagattccagattccttagtggattgaaggatgaaagggtgcaagcagccaaagttttcaaatcttgtggggtcagcgacatccttgttgaacagtctgtggataagaagcaattgattgacgatgtcagaaaagcactctatgcttcgaaaatatgtagctatgctcagggaatgaatttgataagggcaaagagtgctgagaagggatgggacttgaaactaggggagcttgccaggatctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8032" stop="6943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7732" g_stop="7243" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E321222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7732" e_stop="7243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCTGTTGGGAAGCTCTCTAATGATGAATTGCATCAAGCCTTCTCAGAATGGAACAACGGGGAGCTCCAGAGCTTCTTGATTGAAATTACAGCTGATATATTTGGAATCAAGGATGACAAAGCGGATGGACATTTGGTAGACAAGGTTTTAGACAAAACTGGAATGAAAGGTACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAA</genome_strand>
        <mrna_strand>TGAAATCTGTTGGGAAGCTCTCTAATGATGAATTGCATCAAGCCTTCTCAGAATGGAACAACGGGGAGCTCCAGAGCTTCTTGATTGAAATTACAGCTGATATATTTGGAATCAAGGATGACAAAGCGGATGGACATTTGGTAGACAAGGTTTTAGACAAAACTGGAATGAAAGGTACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307055" ref_strand="+" ref_description="SGN-E307055 [cLEY-15-O9]">
      <seq>agaactagtttcgagttttcatttattttttttcttcaaagggattttttgcgacttctacgaggtatacaacatggctaccccgacaagaattggtcttgctggtcttgctgttatgggccaaaatcttgctctcaatattgctgagaaaggattccctatatctgtttacaaccgaaccacttcaaaagttgatgagactgttgaacgagctaaaaatgaaggaaatcttcctctctatggctttcatgacccagagtcctttgtcctctctatccaaaagcctcgcgtcataataattcttgtcaaggctggagcaccagttgatcagaccatcaaaaccctatcttcttacatggagaaaggagactgtatcattgacggtggcaacgaatggtatgagaacacagagaggagagagaaagaaatggctgagttaggtcttcgttatctagggatgggagtttcaggtggtgaagagggtgctcgaaatggaccatcactgatgcctggaggctcttttgaagcctacaagtacatagaagatatcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10672" stop="7574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10370" g_stop="10322" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="64" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10321" i_stop="8364" i_length="1958">
            <donor d_prob="0.871" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8363" g_stop="7874" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="554" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E307055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10370" e_stop="10322"/>
          <exon e_start="8363" e_stop="7874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTATTTTTTTTCTTCAAAAGTATTCTTTGCGACTTCTACGAGGTAATTGTAGCTTTTCTTGGTTTTGTTTTCTGTTTAATGTGTTAAAGTTCTGATTTTTATGTAGTGATTTAATAGTTGATTGAAGGAGTTTGCTTTAATTCTTGATTTATGATATGGGTTTTTCTCGTTGCTTCGTTTGGGGTGGTGTCATATGTTAGGTGAATTCACATAAAAAAGTTGTCTTTAAGCAATCTGTTTGTATTTGTAGATCTTAACAACCCCAGATCATTAGTATCTTAATTAGTTTGTTTCATCTGTTAAGTTTTGATTTTTTATTTTGTGATGTAGTATTTGATTGAAGAAATGTGTTTTTCTCATTGCTTCATTTGAGGTGTGTCTTGGGGTAGGTGAATCAACAGATTAAACTTGTATCGTTGCACATTCTCTATGTATTTGAAGATCTTAACAACCCTAGATTATTAGTAGCTTTCTTGGCGTTGTTTAATCTGTTAAAGTTCTGATTTTTATGTTGTGGTTTAGTATGTGATCGAAGAAGTTGGCTTTAATTCTTGATTTCTGATATGGGTTTTTTCTCATTGCTTCATGTGGGATGTCTTGGGATAGGTGAATCAACACATTAAGCTTGTGTCTTTATGCATTCTATGTATTTGAAGATCTTAACAGCCCCAGATCATTAGTAGCTTTATTAGTTTTGTTTAGTTTGTTGAAGTTTTGATTTTTATTTTTGTGATGTAGTATTTGATTGAAGAAGTTAGCTTTAATTCTTGATATCTGATATGTGTTTTTCTCATTGCTTCACTTGGGGTGTCTTTGGATAGTTGAATCAACACATTTAACTTGTGCCTTTGCACATTTTCTATGTATTTGAAGATCTTAACAACCCCAGATCATTAGTAACTTTATTAGTTTTGTTTAATTTGTTTAAGTTTTGATTTTTATTTTGTGGTGTAGTATTTGATTTAAGAAGTTAGCTTTAATTCTTGATATCTGATATGGGCTTTTCTCATTGCTTCATTTGGGGCTTGGGGTAGGTGAATCAACACATTAAACTTGTGTCTTTGCATATTCTCTATGTATTTGAAGATCTTAACAACCCCAGATTATTAATAGCTTTCTTGGTGTTGTTTAATCTGTTAAAGTTCTGATTTTTATGTTGTGATTTAGTATGTGATTGAAGAAGTTGGCTTTAATTCTTGATATTAGATATGGGTTTTTCTCATTGCTTCATTGGGGTGTCTTTGGTTGAGTAGCTTTAAAAAAAGTCTTCAGGATTTATGGTGCCTGAGGTCGTGTTGTTGGATCACTTAGTTAGGATTCTTAAAGTTTGTTCTTTGGTTTTTCTCTTTTTGGTGTAGCTTTCTTTTCTTTTTTTTTTTCCAAAAAGTTTGGAACTTTTTCTTTTTATGTTTCATCCAGATCTGATCTAAAATGTTTTTGTTTCTTTAGTATACAATAGTTGTCTTTTTCTTGGTACTTTCTCATATTGCTCTGTCATCAGATTCTGTTATTCCTTCCTGCAGTTTGGTTTGGAAACAATTTTTTACTTTTGCTTCTGTGGATTGGTTTTTATGATTGTTTCTGTACCCTTTCAGTTTAAGGTATCTGAATAGTCATTTCTCTGTTAATGGTTTGACAGAAAAAAAAGTTGAATCTATTTCTAACCATTGATCTTTCTCACTCGTGGTGCATCTTTACAAGACTCCAAATAATCAAATTGTTCCCTTTCATTGAGCAACTTTTGCCAAATTGAGGTCAACTTGTTGTTTAAATTCGTGTCGTGACTGAGGGGACTACAGTAGGAATCGTGACTTTTGGTTCTTTCTTTAGCTTAATCCTAGAACTAATATCCCATACGGGAAGTGATAATGAGAGTGGATGCTAGCAGAAATATCATTCCAAAATGTGATCTAATTATCTGTTCTCGTTGTTGCTATCTGCTATTGCTCTTGTACCTTTCATGATTTCAGTTTCATTAATTTCCCATCTTCTGGTCATAGGTATACAACATGGCTACCCCGACAAGAATTGGTCTTGCTGGTCTTGCTGTTATGGGCCAAAATCTTGCTCTCAATATTGCTGAGAAAGGATTCCCTATATCTGTTTACAACCGAACCACTTCAAAAGTTGATGAGACTGTTGAACGAGCTAAAAATGAAGGAAATCTTCCTCTCTATGGCTTTCATGACCCAGAGTCCTTTGTCCTCTCTATCCAAAAGCCTCGCGTCATAATAATTCTTGTCAAGGCTGGAGCACCAGTTGATCAGACCATCAAAACCCTATCTTCTTACATGGAGAAAGGAGACTGTATCATTGACGGTGGCAACGAATGGTATGAGAACACAGAGAGGAGAGAGAAAGAAATGGCTGAGTTAGGTCTTCGTTATCTAGGGATGGGAGTTTCAGGTGGTGAAGAGGGTGCTCGAAATGGACCATCACTGATGCCTGGAGGCTCTTTTGAAGCCTACAAGTACATAGAAGATATCTTAC</genome_strand>
        <mrna_strand>TTTTCATTTATTTTTTTTCTTCAAAGGGATTTTTTGCGACTTCTACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACAACATGGCTACCCCGACAAGAATTGGTCTTGCTGGTCTTGCTGTTATGGGCCAAAATCTTGCTCTCAATATTGCTGAGAAAGGATTCCCTATATCTGTTTACAACCGAACCACTTCAAAAGTTGATGAGACTGTTGAACGAGCTAAAAATGAAGGAAATCTTCCTCTCTATGGCTTTCATGACCCAGAGTCCTTTGTCCTCTCTATCCAAAAGCCTCGCGTCATAATAATTCTTGTCAAGGCTGGAGCACCAGTTGATCAGACCATCAAAACCCTATCTTCTTACATGGAGAAAGGAGACTGTATCATTGACGGTGGCAACGAATGGTATGAGAACACAGAGAGGAGAGAGAAAGAAATGGCTGAGTTAGGTCTTCGTTATCTAGGGATGGGAGTTTCAGGTGGTGAAGAGGGTGCTCGAAATGGACCATCACTGATGCCTGGAGGCTCTTTTGAAGCCTACAAGTACATAGAAGATATCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338714" ref_strand="+" ref_description="SGN-E338714 [cTOE-21-G19]">
      <seq>aattggtcttgctggtcttgctgttatgggccaaaatcttgctctcaatattgctgagaaaggattccctatatctgtttacaaccgaaccacttcaaaagttgatgagactgttgaacgagctaaaaatgaaggaaatcttcctctctatggctttcatgacccagagtcctttgtcctctctatccaaaagcctcgcgtcataataattcttgtcaaggctggagcaccagttgatcagaccatcaaaaccctatcttcttacatggagaaaggagactgtatcattgacggtggcaacgaatggtatgagaacacagagaggagagagaaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8637" stop="7698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8337" g_stop="7998" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E338714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8337" e_stop="7998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGTCTTGCTGGTCTTGCTGTTATGGGCCAAAATCTTGCTCTCAATATTGCTGAGAAAGGATTCCCTATATCTGTTTACAACCGAACCACTTCAAAAGTTGATGAGACTGTTGAACGAGCTAAAAATGAAGGAAATCTTCCTCTCTATGGCTTTCATGACCCAGAGTCCTTTGTCCTCTCTATCCAAAAGCCTCGCGTCATAATAATTCTTGTCAAGGCTGGAGCACCAGTTGATCAGACCATCAAAACCCTATCTTCTTACATGGAGAAAGGAGACTGTATCATTGACGGTGGCAACGAATGGTATGAGAACACAGAGAGGAGAGAGAAAGAAATG</genome_strand>
        <mrna_strand>AATTGGTCTTGCTGGTCTTGCTGTTATGGGCCAAAATCTTGCTCTCAATATTGCTGAGAAAGGATTCCCTATATCTGTTTACAACCGAACCACTTCAAAAGTTGATGAGACTGTTGAACGAGCTAAAAATGAAGGAAATCTTCCTCTCTATGGCTTTCATGACCCAGAGTCCTTTGTCCTCTCTATCCAAAAGCCTCGCGTCATAATAATTCTTGTCAAGGCTGGAGCACCAGTTGATCAGACCATCAAAACCCTATCTTCTTACATGGAGAAAGGAGACTGTATCATTGACGGTGGCAACGAATGGTATGAGAACACAGAGAGGAGAGAGAAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245007" ref_strand="+" ref_description="SGN-E245007 [cLEF-2-H2]">
      <seq>aaatctacattttcattttaagaatgaaaaagtatgtaatgaaagagtatgcaacacttgagaaccacacaaaaatcctatctatgtaaactcatcattttcatctctctatacccctctttctcctcctacctttcaccatgaacaatgctgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttacgcaaagggattacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14267" stop="15472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14567" g_stop="15172" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E245007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14567" e_stop="15172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTACATTTTCATTTTAAGAATGAAAAAGTATGTAATGAAAGAGTATGCAACACTTGAGAACCACACAAAAATCCTATCTATGTAAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACG</genome_strand>
        <mrna_strand>AAATCTACATTTTCATTTTAAGAATGAAAAAGTATGTAATGAAAGAGTATGCAACACTTGAGAACCACACAAAAATCCTATCTATGTAAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282986" ref_strand="+" ref_description="SGN-E282986 [cLER-17-I6]">
      <seq>aaaaatcctatctatgtaaactcatcattttcatctctctatacccctctttctcctcctacctttcaccatgaacaatgctgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14337" stop="15459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14637" g_stop="15159" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E282986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14637" e_stop="15159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCTATCTATGTAAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACG</genome_strand>
        <mrna_strand>AAAAATCCTATCTATGTAAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201835" ref_strand="+" ref_description="SGN-E201835 [cLEC-11-N10]">
      <seq>aaactcatcattttcatctctctatacccctctttctcctcctacctttcaccatgaacaatgctgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14354" stop="15322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14654" g_stop="15022" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E201835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14654" e_stop="15022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAA</genome_strand>
        <mrna_strand>AAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371777" ref_strand="+" ref_description="SGN-E371777 [TUS-30-O1]">
      <seq>tacctttcaccatgaacaatgctgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttacgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtatttttattgacttatgagtaaggtaattatttgtatattttgtgcatgtatgaattattcacgcaaaatcaagtaactgcaaatgattctattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14396" stop="15722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14696" g_stop="15422" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E371777" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14696" e_stop="15422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTA-TTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTGCAAATGATTCTATTTATAACAATAATA</genome_strand>
        <mrna_strand>TACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTGCAAATGATTCTATTT-TAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286996" ref_strand="+" ref_description="SGN-E286996 [cLES-6-M8]">
      <seq>tacctttcaccatgaacaatgctgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttacgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaaagtaattatttgtatattttgtgcatgtatgaattattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14396" stop="15677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14696" g_stop="15377" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E286996" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14696" e_stop="15377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCA</genome_strand>
        <mrna_strand>TACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAAGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733358" ref_strand="+" ref_description="SGN-E733358 [LB04CF07]">
      <seq>cgcttgcttcactttaaccccatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttgcgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaatgtaattatttgtatattttgtgcatgtatgaattattcacgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14416" stop="15692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14715" g_stop="15395" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E733358" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14715" e_stop="15395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCT-GCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTG</genome_strand>
        <mrna_strand>CGCTTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTGCGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAATGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729002" ref_strand="+" ref_description="SGN-E729002 [LA19CF07]">
      <seq>caatgcttcactttaacccctgatccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttgcgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaatgtaattatttgtatattttgtgcatgtatgaattattcacgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14438" stop="15692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14715" g_stop="15393" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E729002" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14715" e_stop="15393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAAC</genome_strand>
        <mrna_strand>CAATGCTTCACTTTAACCCCTGATCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTGCGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAATGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733472" ref_strand="+" ref_description="SGN-E733472 [LB10AD10]">
      <seq>cctatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttgcgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaatgtaattatttgtatattttgtgcatgtatgaattattcacgcaaaatcaaattacttagtaactgcaaatgattctatttataataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14433" stop="15726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="15388" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="706"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E733472" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="15388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAA</genome_strand>
        <mrna_strand>CCTATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTGCGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAATGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733482" ref_strand="+" ref_description="SGN-E733482 [LB10AE09]">
      <seq>cctatctccacccccttcaccctcaaacccaccgtccaccaccgtaacctcaccgttttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctccgatgaatctctccgttcaaaaggattcaatctccacagtacaatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcgacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaacggccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggattggattggggaaagctgtgatggagagattagtcaccaaactgttgcgcaaagggattacgaatattgctctttattcggagccccgagttctcgggttctataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaatgtaattatttgtatattttgtgcatgtatgaattattcacgcaaaatcaaattacttagtaactgcaaatgattctatttataataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14433" stop="15726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="15388" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="706"/>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E733482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="15388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAA</genome_strand>
        <mrna_strand>CCTATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTGCGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAATGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259839" ref_strand="+" ref_description="SGN-E259839 [cLEG-51-H11]">
      <seq>ttctctcaaatccaacccattcccattccgttcaccaccacaaacctctcaatctcctatgaatctctccgttcaaaaggattcaatctccacagtacgatcaccgatctcaacctcgaccacctcaactccgtctttgtagccgtcggatttccccgacgcaacacggagaaaatccaaatcgcattagagaacaccgattcacttttatggatccaatacgagaaaacaaaactgccggtagccttcgccagagccaccggcgatggcgtattcaatgcgattatttgggatgttgtggtggatccgaatttccaagggactggattggggaaagctgtgatggacagattagtcaccacactgttacgcaaagggattacgagtattgctctttattcggagccccgagttcgcgggctctataggcctttgggtattgttgctgacccggatgggatccgatgtatggtttattctataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14489" stop="15573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14789" g_stop="15273" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E259839" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14789" e_stop="15273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAG</genome_strand>
        <mrna_strand>TTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCTATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACGATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCAACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACTGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGACTGGATTGGGGAAAGCTGTGATGGACAGATTAGTCACCACACTGTTACGCAAAGGGATTACGAGTATTGCTCTTTATTCGGAGCCCCGAGTTCGCGGGCTCTATAGGCCTTTGGGTATTGTTGCTGACCCGGATGGGATCCGATGTATGGTTTATTCTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282502" ref_strand="+" ref_description="SGN-E282502 [cLER-18-I20]">
      <seq>tttttttatacaaataattaccttactcataagtcaataaaatacaaaaataaaattaaaaaaatgtcacctattttttgttctttcttctagaataaaccatacctcggatcccatccgggtcagcaacaaaacccaaaggcctatagaacccgagaactcggggctccgaataaagagcaatattcgtaatccctttgcgtaacagtttggtgactaatctctccatcacagctttccccaatccaatcccttggaaattcggatccaccacaacatcccaaataatcgcattgaatacgccatcgccggtggctctggcgaaggctaccggccgttttgttttctcgtattggatccataaaagtgaatcggtgttctctaatgcgatttggattttctccgtgtcgcgtcggggaaatccgacggctacaaagacggagttgaggtggtcgaggttgagatcggtctcactctcattccatcaagaaaacaagccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15653" stop="14591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15359" g_stop="14893" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E282502" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15359" e_stop="14893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATATACAAATAATTACCTTACTCATAAGTCAATAAAATACAAAAATAAAATTAAAAAAATGTCACCTATTTTTTGTTCTTTCTTCTAGAATAAACCATACCTCGGATCCCATCCGGGTCAGCAACAAAACCCAAAGGCCTATAGAACCCGAGAACTCGGGGCTCCGAATAAAGAGCAATATTCGTAATCCCTTTGCGTAACAGTTTGGTGACTAATCTCTCCATCACAGCTTTCCCCAATCCAATCCCTTGGAAATTCGGATCCACCACAACATCCCAAATAATCGCATTGAATACGCCATCGCCGGTGGCTCTGGCGAAGGCTACCGGCCGTTTTGTTTTCTCGTATTGGATCCATAAAAGTGAATCGGTGTTCTCTAATGCGATTTGGATTTTCTCCGTGTCGCGTCGGGGAAATCCGACGGCTACAAAGACGGAGTTGAGGTGGTCGAGGTTGAGATCG</genome_strand>
        <mrna_strand>TTTTTTTATACAAATAATTACCTTACTCATAAGTCAATAAAATACAAAAATAAAATTAAAAAAATGTCACCTATTTTTTGTTCTTTCTTCTAGAATAAACCATACCTCGGATCCCATCCGGGTCAGCAACAAAACCCAAAGGCCTATAGAACCCGAGAACTCGGGGCTCCGAATAAAGAGCAATATTCGTAATCCCTTTGCGTAACAGTTTGGTGACTAATCTCTCCATCACAGCTTTCCCCAATCCAATCCCTTGGAAATTCGGATCCACCACAACATCCCAAATAATCGCATTGAATACGCCATCGCCGGTGGCTCTGGCGAAGGCTACCGGCCGTTTTGTTTTCTCGTATTGGATCCATAAAAGTGAATCGGTGTTCTCTAATGCGATTTGGATTTTCTCCGTGTCGCGTCGGGGAAATCCGACGGCTACAAAGACGGAGTTGAGGTGGTCGAGGTTGAGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371776" ref_strand="+" ref_description="SGN-E371776 [TUS-30-O1](-)">
      <seq>ataggcctttgggttttgttgctgacccggatgggatccgaggtatggtttattctagaagaaagaacaaaaaataggtgacatttttttaattttatttttgtattttattgacttatgagtaaggtaattatttgtatattttgtgcatgtatgaattattcacgcaaaatcaagtaactgcaaatgattctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="+" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14913" stop="15720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15213" g_stop="15420" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="+" ref_id="SGN-E371776" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15213" e_stop="15420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTGCAAATGATTCTATTTATAACAATAA</genome_strand>
        <mrna_strand>ATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTGCAAATGATTCTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727103" ref_strand="+" ref_description="SGN-E727103 [LA13DA03]">
      <seq>gagggtgcttcaaaggtggtgattacgaaagactctacactgatagttactgatggaaatactcaaacagctgtttcaaagagagtttcacagatacaaaatcttgttgagaacacagaagaaaaattccaaaagaaaatcttgaacgaaagaattgcaagattatccggtggtattgccgtcgttcaggtgggagcacaaacacaggttgagttgaaagataaacaactacggattgaggatgcgctcaatgcagcacgggctgctagtgaggaaggagtcgtagtgggcggtggctgttgtctgctgagactatcatcaaaggtggatgctatcaaagaaacgctagacaatgaggatcagaagataggagctgatattttcaaaagagcactatcctatccggcaaaacagatagcaaagaatgctggtgtaaatgggagcattgttgtagagaagatattgtcagttgatgacatgaaatatggatataatgctgcaagagacagatatgaagatttgatggctgccaaaattttagatcctacaaaggttgttagatgttgcgtggagcatgcagcagcagttgccaagacgttcctgatatcagatgctgttgtcattgacatccccggaccagtatctagacaaataagaccaccaacaccaccaccaccgtcaatgccaactttagggactcctcgtcctaccaacaactatagttcaaggctgtctggtctatcaggtctaaaggcaactggtctttaattcagagatgaaaggagagataaaagctaattatcttgctgggagctaaagaaggtactagctactactagctcatcgtaacgatgccaacttctaacaatatcttccatgattgatgacgaaaacctctaccatgaagaatttgatcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="17816" stop="15355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17520" g_stop="17410" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17409" i_stop="17301" i_length="109">
            <donor d_prob="0.398" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17300" g_stop="17223" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="189" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17222" i_stop="17135" i_length="88">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17134" g_stop="17063" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="261" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17062" i_stop="16839" i_length="224">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16838" g_stop="16734" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16733" i_stop="16584" i_length="150">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16583" g_stop="16491" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="459" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16490" i_stop="16386" i_length="105">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16385" g_stop="16293" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="552" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16292" i_stop="16122" i_length="171">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16121" g_stop="15953" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="721" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15952" i_stop="15857" i_length="96">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15856" g_stop="15655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="922" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E727103" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17520" e_stop="17410"/>
          <exon e_start="17300" e_stop="17223"/>
          <exon e_start="17134" e_stop="17063"/>
          <exon e_start="16838" e_stop="16734"/>
          <exon e_start="16583" e_stop="16491"/>
          <exon e_start="16385" e_stop="16293"/>
          <exon e_start="16121" e_stop="15953"/>
          <exon e_start="15856" e_stop="15655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTGCTTCAAAGGTGGTGATTACGAAAGACTCTACACTGATAGTTACTGATGGAAATACTCAAACAGCTGTTTCAAAGAGAGTTTCACAGATACAAAATCTTGTTGAGGTGTGTTATTATGGTTACATCTGATAGATTCGCAAGTCTTGTGGACGGACTTAGAAGTAGTGTTAGAGCTAACACACACATAAATATCTCATCAGTTTGATTTTTGCAGAACACAGAAGAAAAATTCCAAAAGAAAATCTTGAACGAAAGAATTGCAAGATTATCCGGTGGTATTGCCGTCATTCAGGTAACAAAAGATCTGTCCCCGCGTCTTGTCAATCAATATTACAAAATATGTTTGATACCCACGGTGTATTTGATTGTATAAGTTGTAGGTGGGAGCACAAACACAGGTTGAGTTGAAAGATAAACAACTACGGATTGAGGATGCGCTCAATGCAGCACGGGTAATTTACCTATTCTCCCACCACTTAAACGCCATGGCTGATTATACGTGATCCATTATGATTATATTCTTCTGTTTGTCATTGAAGTATCAGACACAAGCATAGCCACTTGTCATCCGATTACTTTATAGAATAACTTTTAATAGCGTAAAGTCTCATTCCTAGGATCAATTCTGGGGGTGCTATCAAATATTTCTCAAGCTTTTTTTACTTTGCCTGCTCAGGCTGCTAGTGAGGAAGGAGTCGTAGTGGGCGGTGGCTGTTGTCTGCTGAGACTATCATCAAAGGTGGATGCTATCAAAGAAACGCTAGACAATGAGGATCAGAAGGTTAATAATCTAGATTGTTCTTATTCAGTTCTCAGTTTCTTGAACTGGTTGTTTTACATTAAGAGTATTGGGTATTCGTGTTTTTCTCCAACTGGTGTTGCTTTTGCATATCTGTTCTCCGGACTGACAGTTCCCTCGAATTATTCACAGATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAGGTACCTCTGAATGTTTCGTCTTTGTTACAGCCAACTAAAGTTTGTTAAACTCAAAACTGGAATACGTTATCTGGTGGTTGACTTGAATTTTTAACACAATTGCAGATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAGGCAAGATACTATATCTCTTAGTATGGTAGGTGAAGGAATCAAACATCTTAACTGATACTACAAAACATAACTCTATTTTCCAACACATATTCCTCGACTCCTCTATTTATCGATGGTTAACAAGTCTGATTACGTTAGTGCACCATAAACTTCCTTGAAATCGTGAAACAGGTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCGCCGCCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATAGTAAGTACATTGTCTATAACTCTCCCCATGTCTCTGTATTTGGTCTGATATTTAACTCCCAAAATCCAATGTTCCTATAGCGTAAATGATTTGTAGGTTCAAGGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACTAGCTCATCGTAACGATGCCAACTTCTAACAATATCTTCCATGATTGATGACGAAAACCTCTACCATGAAGAAGTTTGATCATTTTC</genome_strand>
        <mrna_strand>GAGGGTGCTTCAAAGGTGGTGATTACGAAAGACTCTACACTGATAGTTACTGATGGAAATACTCAAACAGCTGTTTCAAAGAGAGTTTCACAGATACAAAATCTTGTTGAG.............................................................................................................AACACAGAAGAAAAATTCCAAAAGAAAATCTTGAACGAAAGAATTGCAAGATTATCCGGTGGTATTGCCGTCGTTCAG........................................................................................GTGGGAGCACAAACACAGGTTGAGTTGAAAGATAAACAACTACGGATTGAGGATGCGCTCAATGCAGCACGG................................................................................................................................................................................................................................GCTGCTAGTGAGGAAGGAGTCGTAGTGGGCGGTGGCTGTTGTCTGCTGAGACTATCATCAAAGGTGGATGCTATCAAAGAAACGCTAGACAATGAGGATCAGAAG......................................................................................................................................................ATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAG.........................................................................................................ATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAG...........................................................................................................................................................................GTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCACCGTCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATA................................................................................................GTTCAAGGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACTAGCTCATCGTAACGATGCCAACTTCTAACAATATCTTCCATGATTGATGACGAAAACCTCTACCATGAAGAA-TTTGATCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342982" ref_strand="+" ref_description="SGN-E342982 [cTOF-11-N14]">
      <seq>ctagacaatgaggatcagaagataggagctgatattttcaaaagagcactatcctatccggcaaaacagatagcaaagaatgctggtgtaaatgggagcattgttgtagagaagatattgtcagttgatgacatgaaatatggatataatgctgcaagagacagatatgaagatttgatggctgccaaaattttagatcctacaaaggcaagatactatatctcttagtatggtaggtgaaggaatcaaacatcttaactgatactacaaaacataactctattttccaacacatattcctcgactcctctatttatcgatggttaacaagtctgattacgttagtgcaccataaacttccttgaaatcgtgaaacaggttgttagatgttgcgtggagcatgcagcagcagttgccaagacgttcctgatatcagatgctgttgtcattgacatccccggaccagtatctagacaaataagaccaccaacaccaccaccgccgccaatgccaactttagggactcctcgtcctaccaacaactatagtaagtacattgtctataactctccccatgtctctgtatttggtctgatatttaactcccaaaatccaatgttcctatagcgtaaatgatttgtaggttcaagggctgtctggtctatcaggtctaaaggcaactggtctttaattcagagatgaaaggagagataaaagctaattatcttgctgggagctaaagaaggtactagctactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="17054" stop="15441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16754" g_stop="16734" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16733" i_stop="16584" i_length="150">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16583" g_stop="16491" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="114" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16490" i_stop="16386" i_length="105">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16385" g_stop="15741" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="760" r_length="646" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E342982" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16754" e_stop="16734"/>
          <exon e_start="16583" e_stop="16491"/>
          <exon e_start="16385" e_stop="15741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACAATGAGGATCAGAAGGTTAATAATCTAGATTGTTCTTATTCAGTTCTCAGTTTCTTGAACTGGTTGTTTTACATTAAGAGTATTGGGTATTCGTGTTTTTCTCCAACTGGTGTTGCTTTTGCATATCTGTTCTCCGGACTGACAGTTCCCTCGAATTATTCACAGATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAGGTACCTCTGAATGTTTCGTCTTTGTTACAGCCAACTAAAGTTTGTTAAACTCAAAACTGGAATACGTTATCTGGTGGTTGACTTGAATTTTTAACACAATTGCAGATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAGGCAAGATACTATATCTCTTAGTATGGTAGGTGAAGGAATCAAACATCTTAACTGATACTACAAAACATAACTCTATTTTCCAACACATATTCCTCGACTCCTCTATTTATCGATGGTTAACAAGTCTGATTACGTTAGTGCACCATAAACTTCCTTGAAATCGTGAAACAGGTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCGCCGCCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATAGTAAGTACATTGTCTATAACTCTCCCCATGTCTCTGTATTTGGTCTGATATTTAACTCCCAAAATCCAATGTTCCTATAGCGTAAATGATTTGTAGGTTCAA-GGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACT</genome_strand>
        <mrna_strand>CTAGACAATGAGGATCAGAAG......................................................................................................................................................ATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAG.........................................................................................................ATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAGGCAAGATACTATATCTCTTAGTATGGTAGGTGAAGGAATCAAACATCTTAACTGATACTACAAAACATAACTCTATTTTCCAACACATATTCCTCGACTCCTCTATTTATCGATGGTTAACAAGTCTGATTACGTTAGTGCACCATAAACTTCCTTGAAATCGTGAAACAGGTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCGCCGCCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATAGTAAGTACATTGTCTATAACTCTCCCCATGTCTCTGTATTTGGTCTGATATTTAACTCCCAAAATCCAATGTTCCTATAGCGTAAATGATTTGTAGGTTCAAGGGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367207" ref_strand="+" ref_description="SGN-E367207 [cLPT-5-I1]">
      <seq>aaatggttcagtaaacagaatttctaaaagggtttcttgttctatgttgaacacaagagctatggctaaagaattgtactttaatcatgatggttctacaacaaagaagcttttggcaagtgtggatttggtggcagagctggttggtgtaactttgggtccaaaaggaagaaatgtagttcttggaaataagtatggtcctccaaagattgttaatgatggtgaaactgttctaaaagagattcagctggacgatcctctggaatatgtcggagtaaagttggttcgagaagctggtgccaagactaataatcttgctggtgatggttgcacaacatctatagtgcttgctcgaggtctgattgctgaaggtgtcaaggttactgcaatgggcgcaaatgttgtccaagtgtctcgtggaattgagaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0023M16-TKV0P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0023M16.1" temp_strand="-" temp_description="C05HBa0023M16.1  AC232700.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0023M16 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19719" stop="18098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19419" g_stop="19305" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19304" i_stop="19210" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19209" g_stop="19084" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="241" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19083" i_stop="18666" i_length="418">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18665" g_stop="18528" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="379" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18527" i_stop="18452" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18451" g_stop="18398" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="433" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0023M16.1" gen_strand="-" ref_id="SGN-E367207" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0023M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19419" e_stop="19305"/>
          <exon e_start="19209" e_stop="19084"/>
          <exon e_start="18665" e_stop="18528"/>
          <exon e_start="18451" e_stop="18398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTCAGTAAATAGAATTTCTAAAAGGGTTTCTTGTTCTATGTTGAACACAAGAGCTATGGCTAAAGAACTGTACTTTAATCATGATGGTTCTACAACAAAGAAGCTTTTGGTCATTATGGGTTTTTTTTTCTTTATTTTCTTGAATTTTTGCTAATTTTTTTTTTTTAATTTAAAGATTTTGATTTGGATTGAAATTTTGTCCAGGCAGGTGTCGATTTGGTGGCAGAGCTGGTTGGTGTAACTTTGGGTCCAAAAGGAAGAAATGTAGTTCTTGGAAATAAGTATGGTCCTCCAAAGATTGTTAATGATGGTGAAACTGTTCTAAAAGAGGTAAGGTACATTACAACTTACAAGCATTGTTTATGAGTATGCACGTGTAGATACCTCAACTCGTACCCATTGTGTCAGTTGAACACTTCAACTTACAAAATAATTGTCTAGACACATCCAAAATTTATGTTACACGTCAGCATTGGGTATTCACGAGATATAGTGGGGGGTTGAGGGTGAGTTGGATCGTTTAGTTGTCAGTTGAGACCAAGTTCAGGTGTCTATAAACAAAATTAGAGTGCTTACTTGTCAGCTGAGACTAAGTATGCGTGTTGATTTATATTGGAATTCATGTGACTTAGGAATATGTAAATGAATAGGTATTTCAATGTCATCAAGTTACAGAATAGCAAAACACATTTGTTGATTTCGTTGGACTAGTGGTGCTTCATGTTCTTACAAGTTGTTTTCACTACAGATTCAGCTGGACGATCCTCTGGAATATGTGGGAGTAAAGTTGGTTAGAGAAGCTGGTGCCAAGACTAATAATCTTGCTGGTGATGGTTGCACAACATCTATAGTGCTTGCTCGAGGTCTGATTGCTGAAGGTGTCAAGGTTTGAATAGAACGAATAACATAATCTGCTTTCGTATTTTAGTTATATCTGGTGATTCGTTAGTATCTTTGTCTAGGTTACTGCAATGGGCGCAAATGTTGTCCAAGTGTCTCGTGGAATTGAGAAAACT</genome_strand>
        <mrna_strand>AAATGGTTCAGTAAACAGAATTTCTAAAAGGGTTTCTTGTTCTATGTTGAACACAAGAGCTATGGCTAAAGAATTGTACTTTAATCATGATGGTTCTACAACAAAGAAGCTTTTG...............................................................................................GCAAGTGTGGATTTGGTGGCAGAGCTGGTTGGTGTAACTTTGGGTCCAAAAGGAAGAAATGTAGTTCTTGGAAATAAGTATGGTCCTCCAAAGATTGTTAATGATGGTGAAACTGTTCTAAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCTGGACGATCCTCTGGAATATGTCGGAGTAAAGTTGGTTCGAGAAGCTGGTGCCAAGACTAATAATCTTGCTGGTGATGGTTGCACAACATCTATAGTGCTTGCTCGAGGTCTGATTGCTGAAGGTGTCAAG............................................................................GTTACTGCAATGGGCGCAAATGTTGTCCAAGTGTCTCGTGGAATTGAGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="809" PGL_stop="1203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="809" e_stop="1203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="809" e_stop="1203" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="809" stop="1034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="819" stop="1181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACACGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTTATTTTTCAAACACTGAAAATTTTCCTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGAGTACAGTGAGGGGATTAAATTTCTTAAGAACACACAATAGCTTCTGTGGACTCGAATTATTTGTTGTATTTTATGTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTCATTCGTTAACCTTATAAATACAGGTTACTATAAAAATAACAATAA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  L  F  F  K  H  *  K  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  N  L  R  Y  H  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  S  T  V  R  G  L  N  F  L  R  T  H  N  S  F  C  G  L  E  L  F  V  V  F  Y  V  F  S  A  S  S  Y  F  C  F  C  S  F  V  N  L  I  N  T  G  Y  Y  K  N  N  N   </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  R  K  S  I  F  Y  F  S  N  T  E  N  F  P  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  F  V  E  V  K  E  I  *  G  T  T  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  *  V  Q  *  G  D  *  I  S  *  E  H  T  I  A  S  V  D  S  N  Y  L  L  Y  F  M  Y  F  L  L  H  L  I  S  V  S  V  H  S  L  T  L  *  I  Q  V  T  I  K  I  T  I  </second_frame>
            <third_frame>   T  R  S  L  L  K  M  A  I  K  G  S  Q  F  F  I  F  Q  T  L  K  I  F  L  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  E  Y  S  E  G  I  K  F  L  K  N  T  Q  *  L  L  W  T  R  I  I  C  C  I  L  C  I  F  C  F  I  L  F  L  F  L  F  I  R  *  P  Y  K  Y  R  L  L  *  K  *  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0023M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7736" PGL_stop="6695"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7736" e_stop="6695"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="7736" e_stop="6695" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7736" stop="7014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7732" stop="7243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7557" stop="7144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7464" stop="7219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7357" stop="6708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7357" stop="7142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7341" stop="6708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7224" stop="6702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7200" stop="6698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7106" stop="6702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7066" stop="6695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7019" stop="6695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6947" stop="6702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTGAAATCTGTTGGGAAGCTCTCTAATGATGAATTGCATCAAGCCTTCTCAGAATGGAACAACGGGGAGCTCCAGAGCTTCTTGATTGAAATTACAGCTGATATATTTGGAATCAAGGATGACAAAGCGGATGGACATTTGGTAGACAAGGTTTTAGACAAAACTGGAATGAAAGGTACTGGTAAATGGACCGTTCAGCAAGCTGCTGAACTGTCAATTGCTGCTCCTACAATAGCCTCATCCCTAGATTCCAGATTCCTTAGTGGATTGAAGGATGAAAGGGTGCAAGCAGCCAAAGTTTTCAAATCTTGTGGGGTCAGCGACATCCTTGTTGAACAGTCTGTGGATAAGAAGCAATTGATTGACGATGTCAGAAAAGCACTCTATGCTTCGAAAATATGTAGCTATGCTCAGGGAATGAATTTGATAAGGGCAAAGAGTGCTGAGAAGGGATGGGACTTGAAACTAGGGGAGCTTGCCAGGATCTGGAAAGGTGGTTGCATTATCCGTGCAATATTTTTGGATCGTATTAAGCAAGCTTATGACAGAAACGCAGATCTCGCTAACCTACTTGTGGATGAAGAGTTTGCAAAGGAGGTAGTTGAACGCCAGTCTGCCTGGCGAAGAGTGGTCTGCCTAGCTATAACCTCGGGTATTAGCACACCTGGCATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGGCTTCCTGCAAATTTAGTCCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAGAGGACCGATATGCCTGGGTCATTTCATACTGAGTGGTTCAAGATTGCCAAACAGTCGAAGATCTGAGCTCTGCTGGTTACATTCTTGTCATTGACCTAATTGAATAAAGTGCATGTTGTAACTGCTCAAAGTTTTTATATGTTTGTTCTGGAGCCTATTTTGTACCTGTAGGCCTTGGCGGCTTTTCTCTCATATTATGTCTTCCAAGTTATTGGAACCTGTCGTACAATCAAAGAGAGTATTATTTCTTCTTTTAGATAAGCCTCTT</gDNA_template>
            <first_frame> V  L  K  S  V  G  K  L  S  N  D  E  L  H  Q  A  F  S  E  W  N  N  G  E  L  Q  S  F  L  I  E  I  T  A  D  I  F  G  I  K  D  D  K  A  D  G  H  L  V  D  K  V  L  D  K  T  G  M  K  G  T  G  K  W  T  V  Q  Q  A  A  E  L  S  I  A  A  P  T  I  A  S  S  L  D  S  R  F  L  S  G  L  K  D  E  R  V  Q  A  A  K  V  F  K  S  C  G  V  S  D  I  L  V  E  Q  S  V  D  K  K  Q  L  I  D  D  V  R  K  A  L  Y  A  S  K  I  C  S  Y  A  Q  G  M  N  L  I  R  A  K  S  A  E  K  G  W  D  L  K  L  G  E  L  A  R  I  W  K  G  G  C  I  I  R  A  I  F  L  D  R  I  K  Q  A  Y  D  R  N  A  D  L  A  N  L  L  V  D  E  E  F  A  K  E  V  V  E  R  Q  S  A  W  R  R  V  V  C  L  A  I  T  S  G  I  S  T  P  G  M  S  S  S  L  A  Y  F  D  S  Y  R  R  E  R  L  P  A  N  L  V  Q  A  Q  R  D  Y  F  G  A  H  T  Y  E  R  T  D  M  P  G  S  F  H  T  E  W  F  K  I  A  K  Q  S  K  I  *  A  L  L  V  T  F  L  S  L  T  *  L  N  K  V  H  V  V  T  A  Q  S  F  Y  M  F  V  L  E  P  I  L  Y  L  *  A  L  A  A  F  L  S  Y  Y  V  F  Q  V  I  G  T  C  R  T  I  K  E  S  I  I  S  S  F  R  *  A  S  </first_frame>
            <second_frame>  F  *  N  L  L  G  S  S  L  M  M  N  C  I  K  P  S  Q  N  G  T  T  G  S  S  R  A  S  *  L  K  L  Q  L  I  Y  L  E  S  R  M  T  K  R  M  D  I  W  *  T  R  F  *  T  K  L  E  *  K  V  L  V  N  G  P  F  S  K  L  L  N  C  Q  L  L  L  L  Q  *  P  H  P  *  I  P  D  S  L  V  D  *  R  M  K  G  C  K  Q  P  K  F  S  N  L  V  G  S  A  T  S  L  L  N  S  L  W  I  R  S  N  *  L  T  M  S  E  K  H  S  M  L  R  K  Y  V  A  M  L  R  E  *  I  *  *  G  Q  R  V  L  R  R  D  G  T  *  N  *  G  S  L  P  G  S  G  K  V  V  A  L  S  V  Q  Y  F  W  I  V  L  S  K  L  M  T  E  T  Q  I  S  L  T  Y  L  W  M  K  S  L  Q  R  R  *  L  N  A  S  L  P  G  E  E  W  S  A  *  L  *  P  R  V  L  A  H  L  A  C  L  Q  V  L  L  T  L  T  H  T  G  G  K  G  F  L  Q  I  *  S  K  L  K  G  I  T  L  V  L  I  L  M  R  G  P  I  C  L  G  H  F  I  L  S  G  S  R  L  P  N  S  R  R  S  E  L  C  W  L  H  S  C  H  *  P  N  *  I  K  C  M  L  *  L  L  K  V  F  I  C  L  F  W  S  L  F  C  T  C  R  P  W  R  L  F  S  H  I  M  S  S  K  L  L  E  P  V  V  Q  S  K  R  V  L  F  L  L  L  D  K  P  L </second_frame>
            <third_frame>   S  E  I  C  W  E  A  L  *  *  *  I  A  S  S  L  L  R  M  E  Q  R  G  A  P  E  L  L  D  *  N  Y  S  *  Y  I  W  N  Q  G  *  Q  S  G  W  T  F  G  R  Q  G  F  R  Q  N  W  N  E  R  Y  W  *  M  D  R  S  A  S  C  *  T  V  N  C  C  S  Y  N  S  L  I  P  R  F  Q  I  P  *  W  I  E  G  *  K  G  A  S  S  Q  S  F  Q  I  L  W  G  Q  R  H  P  C  *  T  V  C  G  *  E  A  I  D  *  R  C  Q  K  S  T  L  C  F  E  N  M  *  L  C  S  G  N  E  F  D  K  G  K  E  C  *  E  G  M  G  L  E  T  R  G  A  C  Q  D  L  E  R  W  L  H  Y  P  C  N  I  F  G  S  Y  *  A  S  L  *  Q  K  R  R  S  R  *  P  T  C  G  *  R  V  C  K  G  G  S  *  T  P  V  C  L  A  K  S  G  L  P  S  Y  N  L  G  Y  *  H  T  W  H  V  F  K  S  C  L  L  *  L  I  Q  E  G  K  A  S  C  K  F  S  P  S  S  K  G  L  L  W  C  S  Y  L  *  E  D  R  Y  A  W  V  I  S  Y  *  V  V  Q  D  C  Q  T  V  E  D  L  S  S  A  G  Y  I  L  V  I  D  L  I  E  *  S  A  C  C  N  C  S  K  F  L  Y  V  C  S  G  A  Y  F  V  P  V  G  L  G  G  F  S  L  I  L  C  L  P  S  Y  W  N  L  S  Y  N  Q  R  E  Y  Y  F  F  F  *  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7736" stop="6897"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLKSVGKLSNDELHQAFSEWNNGELQSFLIEITADIFGIKDDKADGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIASSLDSRFLSGLKDERVQAAKVFKSCGVSDILVEQSVDKKQLIDDVRKALYASKICSYAQGMNLIRAKSAEKGWDLKLGELARIWKGGCIIRAIFLDRIKQAYDRNADLANLLVDEEFAKEVVERQSAWRRVVCLAITSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDMPGSFHTEWFKIAKQSKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10370" PGL_stop="7874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10370" e_stop="10322"/>
            <exon e_start="8363" e_stop="7874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.871" acc_prob="0.999" e_score="0.939"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="10370" e_stop="10322" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.871" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10321" i_stop="8364" i_length="1958"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8363" e_stop="7874" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10370" stop="10322"/>
              <exon start="8363" stop="7874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8337" stop="7998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCATTTATTTTTTTTCTTCAAAAGTATTCTTTGCGACTTCTACGAG : GTATACAACATGGCTACCCCGACAAGAATTGGTCTTGCTGGTCTTGCTGTTATGGGCCAAAATCTTGCTCTCAATATTGCTGAGAAAGGATTCCCTATATCTGTTTACAACCGAACCACTTCAAAAGTTGATGAGACTGTTGAACGAGCTAAAAATGAAGGAAATCTTCCTCTCTATGGCTTTCATGACCCAGAGTCCTTTGTCCTCTCTATCCAAAAGCCTCGCGTCATAATAATTCTTGTCAAGGCTGGAGCACCAGTTGATCAGACCATCAAAACCCTATCTTCTTACATGGAGAAAGGAGACTGTATCATTGACGGTGGCAACGAATGGTATGAGAACACAGAGAGGAGAGAGAAAGAAATGGCTGAGTTAGGTCTTCGTTATCTAGGGATGGGAGTTTCAGGTGGTGAAGAGGGTGCTCGAAATGGACCATCACTGATGCCTGGAGGCTCTTTTGAAGCCTACAAGTACATAGAAGATATCTTAC</gDNA_template>
            <first_frame> F  S  F  I  F  F  L  Q  K  Y  S  L  R  L  L  R   : G  I  Q  H  G  Y  P  D  K  N  W  S  C  W  S  C  C  Y  G  P  K  S  C  S  Q  Y  C  *  E  R  I  P  Y  I  C  L  Q  P  N  H  F  K  S  *  *  D  C  *  T  S  *  K  *  R  K  S  S  S  L  W  L  S  *  P  R  V  L  C  P  L  Y  P  K  A  S  R  H  N  N  S  C  Q  G  W  S  T  S  *  S  D  H  Q  N  P  I  F  L  H  G  E  R  R  L  Y  H  *  R  W  Q  R  M  V  *  E  H  R  E  E  R  E  R  N  G  *  V  R  S  S  L  S  R  D  G  S  F  R  W  *  R  G  C  S  K  W  T  I  T  D  A  W  R  L  F  *  S  L  Q  V  H  R  R  Y  L   </first_frame>
            <second_frame>  F  H  L  F  F  F  F  K  S  I  L  C  D  F  Y  E  :  V  Y  N  M  A  T  P  T  R  I  G  L  A  G  L  A  V  M  G  Q  N  L  A  L  N  I  A  E  K  G  F  P  I  S  V  Y  N  R  T  T  S  K  V  D  E  T  V  E  R  A  K  N  E  G  N  L  P  L  Y  G  F  H  D  P  E  S  F  V  L  S  I  Q  K  P  R  V  I  I  I  L  V  K  A  G  A  P  V  D  Q  T  I  K  T  L  S  S  Y  M  E  K  G  D  C  I  I  D  G  G  N  E  W  Y  E  N  T  E  R  R  E  K  E  M  A  E  L  G  L  R  Y  L  G  M  G  V  S  G  G  E  E  G  A  R  N  G  P  S  L  M  P  G  G  S  F  E  A  Y  K  Y  I  E  D  I  L  </second_frame>
            <third_frame>   F  I  Y  F  F  S  S  K  V  F  F  A  T  S  T  R :   Y  T  T  W  L  P  R  Q  E  L  V  L  L  V  L  L  L  W  A  K  I  L  L  S  I  L  L  R  K  D  S  L  Y  L  F  T  T  E  P  L  Q  K  L  M  R  L  L  N  E  L  K  M  K  E  I  F  L  S  M  A  F  M  T  Q  S  P  L  S  S  L  S  K  S  L  A  S  *  *  F  L  S  R  L  E  H  Q  L  I  R  P  S  K  P  Y  L  L  T  W  R  K  E  T  V  S  L  T  V  A  T  N  G  M  R  T  Q  R  G  E  R  K  K  W  L  S  *  V  F  V  I  *  G  W  E  F  Q  V  V  K  R  V  L  E  M  D  H  H  *  C  L  E  A  L  L  K  P  T  S  T  *  K  I  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10369" stop="10322"/>
                    <exon start="8363" stop="7875"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLFFFFKSILCDFYEVYNMATPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKNEGNLPLYGFHDPESFVLSIQKPRVIIILVKAGAPVDQTIKTLSSYMEKGDCIIDGGNEWYENTERREKEMAELGLRYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14567" PGL_stop="15422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14567" e_stop="15422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="14567" e_stop="15422" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14567" stop="15172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14637" stop="15159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14654" stop="15022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14696" stop="15422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14696" stop="15377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14715" stop="15395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14715" stop="15393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="15388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14789" stop="15273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15213" stop="15420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTACATTTTCATTTTAAGAATGAAAAAGTATGTAATGAAAGAGTATGCAACACTTGAGAACCACACAAAAATCCTATCTATGTAAACTCATCATTTTCATCTCTCTATACCCCTCTTTCTCCTCCTACCTTTCACCATGAACAATGCTGCTTCACTTTAACCCCATCTCCACCCCCTTCACCCTCAAACCCACCGTCCACCACCGTAACCTCACCGTTTTCTCTCAAATCCAACCCATTCCCATTCCGTTCACCACCACAAACCTCTCAATCTCCGATGAATCTCTCCGTTCAAAAGGATTCAATCTCCACAGTACAATCACCGATCTCAACCTCGACCACCTCAACTCCGTCTTTGTAGCCGTCGGATTTCCCCGACGCGACACGGAGAAAATCCAAATCGCATTAGAGAACACCGATTCACTTTTATGGATCCAATACGAGAAAACAAAACGGCCGGTAGCCTTCGCCAGAGCCACCGGCGATGGCGTATTCAATGCGATTATTTGGGATGTTGTGGTGGATCCGAATTTCCAAGGGATTGGATTGGGGAAAGCTGTGATGGAGAGATTAGTCACCAAACTGTTACGCAAAGGGATTACGAATATTGCTCTTTATTCGGAGCCCCGAGTTCTCGGGTTCTATAGGCCTTTGGGTTTTGTTGCTGACCCGGATGGGATCCGAGGTATGGTTTATTCTAGAAGAAAGAACAAAAAATAGGTGACATTTTTTTAATTTTATTTTTGTATTTTATTGACTTATGAGTAAGGTAATTATTTGTATATTTTGTGCATGTATGAATTATTCACGCAAAATCAAGTAACTGCAAATGATTCTATTTATAACAATAATA</gDNA_template>
            <first_frame> K  S  T  F  S  F  *  E  *  K  S  M  *  *  K  S  M  Q  H  L  R  T  T  Q  K  S  Y  L  C  K  L  I  I  F  I  S  L  Y  P  S  F  S  S  Y  L  S  P  *  T  M  L  L  H  F  N  P  I  S  T  P  F  T  L  K  P  T  V  H  H  R  N  L  T  V  F  S  Q  I  Q  P  I  P  I  P  F  T  T  T  N  L  S  I  S  D  E  S  L  R  S  K  G  F  N  L  H  S  T  I  T  D  L  N  L  D  H  L  N  S  V  F  V  A  V  G  F  P  R  R  D  T  E  K  I  Q  I  A  L  E  N  T  D  S  L  L  W  I  Q  Y  E  K  T  K  R  P  V  A  F  A  R  A  T  G  D  G  V  F  N  A  I  I  W  D  V  V  V  D  P  N  F  Q  G  I  G  L  G  K  A  V  M  E  R  L  V  T  K  L  L  R  K  G  I  T  N  I  A  L  Y  S  E  P  R  V  L  G  F  Y  R  P  L  G  F  V  A  D  P  D  G  I  R  G  M  V  Y  S  R  R  K  N  K  K  *  V  T  F  F  *  F  Y  F  C  I  L  L  T  Y  E  *  G  N  Y  L  Y  I  L  C  M  Y  E  L  F  T  Q  N  Q  V  T  A  N  D  S  I  Y  N  N  N  </first_frame>
            <second_frame>  N  L  H  F  H  F  K  N  E  K  V  C  N  E  R  V  C  N  T  *  E  P  H  K  N  P  I  Y  V  N  S  S  F  S  S  L  Y  T  P  L  S  P  P  T  F  H  H  E  Q  C  C  F  T  L  T  P  S  P  P  P  S  P  S  N  P  P  S  T  T  V  T  S  P  F  S  L  K  S  N  P  F  P  F  R  S  P  P  Q  T  S  Q  S  P  M  N  L  S  V  Q  K  D  S  I  S  T  V  Q  S  P  I  S  T  S  T  T  S  T  P  S  L  *  P  S  D  F  P  D  A  T  R  R  K  S  K  S  H  *  R  T  P  I  H  F  Y  G  S  N  T  R  K  Q  N  G  R  *  P  S  P  E  P  P  A  M  A  Y  S  M  R  L  F  G  M  L  W  W  I  R  I  S  K  G  L  D  W  G  K  L  *  W  R  D  *  S  P  N  C  Y  A  K  G  L  R  I  L  L  F  I  R  S  P  E  F  S  G  S  I  G  L  W  V  L  L  L  T  R  M  G  S  E  V  W  F  I  L  E  E  R  T  K  N  R  *  H  F  F  N  F  I  F  V  F  Y  *  L  M  S  K  V  I  I  C  I  F  C  A  C  M  N  Y  S  R  K  I  K  *  L  Q  M  I  L  F  I  T  I  I </second_frame>
            <third_frame>   I  Y  I  F  I  L  R  M  K  K  Y  V  M  K  E  Y  A  T  L  E  N  H  T  K  I  L  S  M  *  T  H  H  F  H  L  S  I  P  L  F  L  L  L  P  F  T  M  N  N  A  A  S  L  *  P  H  L  H  P  L  H  P  Q  T  H  R  P  P  P  *  P  H  R  F  L  S  N  P  T  H  S  H  S  V  H  H  H  K  P  L  N  L  R  *  I  S  P  F  K  R  I  Q  S  P  Q  Y  N  H  R  S  Q  P  R  P  P  Q  L  R  L  C  S  R  R  I  S  P  T  R  H  G  E  N  P  N  R  I  R  E  H  R  F  T  F  M  D  P  I  R  E  N  K  T  A  G  S  L  R  Q  S  H  R  R  W  R  I  Q  C  D  Y  L  G  C  C  G  G  S  E  F  P  R  D  W  I  G  E  S  C  D  G  E  I  S  H  Q  T  V  T  Q  R  D  Y  E  Y  C  S  L  F  G  A  P  S  S  R  V  L  *  A  F  G  F  C  C  *  P  G  W  D  P  R  Y  G  L  F  *  K  K  E  Q  K  I  G  D  I  F  L  I  L  F  L  Y  F  I  D  L  *  V  R  *  L  F  V  Y  F  V  H  V  *  I  I  H  A  K  S  S  N  C  K  *  F  Y  L  *  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14711" stop="15289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMLLHFNPISTPFTLKPTVHHRNLTVFSQIQPIPIPFTTTNLSISDESLRSKGFNLHSTITDLNLDHLNSVFVAVGFPRRDTEKIQIALENTDSLLWIQYEKTKRPVAFARATGDGVFNAIIWDVVVDPNFQGIGLGKAVMERLVTKLLRKGITNIALYSEPRVLGFYRPLGFVADPDGIRGMVYSRRKNKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15359" PGL_stop="14893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15359" e_stop="14893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="15359" e_stop="14893" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15359" stop="14893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAATATACAAATAATTACCTTACTCATAAGTCAATAAAATACAAAAATAAAATTAAAAAAATGTCACCTATTTTTTGTTCTTTCTTCTAGAATAAACCATACCTCGGATCCCATCCGGGTCAGCAACAAAACCCAAAGGCCTATAGAACCCGAGAACTCGGGGCTCCGAATAAAGAGCAATATTCGTAATCCCTTTGCGTAACAGTTTGGTGACTAATCTCTCCATCACAGCTTTCCCCAATCCAATCCCTTGGAAATTCGGATCCACCACAACATCCCAAATAATCGCATTGAATACGCCATCGCCGGTGGCTCTGGCGAAGGCTACCGGCCGTTTTGTTTTCTCGTATTGGATCCATAAAAGTGAATCGGTGTTCTCTAATGCGATTTGGATTTTCTCCGTGTCGCGTCGGGGAAATCCGACGGCTACAAAGACGGAGTTGAGGTGGTCGAGGTTGAGATCG</gDNA_template>
            <first_frame> T  K  Y  T  N  N  Y  L  T  H  K  S  I  K  Y  K  N  K  I  K  K  M  S  P  I  F  C  S  F  F  *  N  K  P  Y  L  G  S  H  P  G  Q  Q  Q  N  P  K  A  Y  R  T  R  E  L  G  A  P  N  K  E  Q  Y  S  *  S  L  C  V  T  V  W  *  L  I  S  P  S  Q  L  S  P  I  Q  S  L  G  N  S  D  P  P  Q  H  P  K  *  S  H  *  I  R  H  R  R  W  L  W  R  R  L  P  A  V  L  F  S  R  I  G  S  I  K  V  N  R  C  S  L  M  R  F  G  F  S  P  C  R  V  G  E  I  R  R  L  Q  R  R  S  *  G  G  R  G  *  D   </first_frame>
            <second_frame>  Q  N  I  Q  I  I  T  L  L  I  S  Q  *  N  T  K  I  K  L  K  K  C  H  L  F  F  V  L  S  S  R  I  N  H  T  S  D  P  I  R  V  S  N  K  T  Q  R  P  I  E  P  E  N  S  G  L  R  I  K  S  N  I  R  N  P  F  A  *  Q  F  G  D  *  S  L  H  H  S  F  P  Q  S  N  P  L  E  I  R  I  H  H  N  I  P  N  N  R  I  E  Y  A  I  A  G  G  S  G  E  G  Y  R  P  F  C  F  L  V  L  D  P  *  K  *  I  G  V  L  *  C  D  L  D  F  L  R  V  A  S  G  K  S  D  G  Y  K  D  G  V  E  V  V  E  V  E  I  </second_frame>
            <third_frame>   K  I  Y  K  *  L  P  Y  S  *  V  N  K  I  Q  K  *  N  *  K  N  V  T  Y  F  L  F  F  L  L  E  *  T  I  P  R  I  P  S  G  S  A  T  K  P  K  G  L  *  N  P  R  T  R  G  S  E  *  R  A  I  F  V  I  P  L  R  N  S  L  V  T  N  L  S  I  T  A  F  P  N  P  I  P  W  K  F  G  S  T  T  T  S  Q  I  I  A  L  N  T  P  S  P  V  A  L  A  K  A  T  G  R  F  V  F  S  Y  W  I  H  K  S  E  S  V  F  S  N  A  I  W  I  F  S  V  S  R  R  G  N  P  T  A  T  K  T  E  L  R  W  S  R  L  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15183" stop="14893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAIFVIPLRNSLVTNLSITAFPNPIPWKFGSTTTSQIIALNTPSPVALAKATGRFVFSYWIHKSESVFSNAIWIFSVSRRGNPTATKTELRWSRLRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="17520" PGL_stop="15655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17520" e_stop="17410"/>
            <exon e_start="17300" e_stop="17223"/>
            <exon e_start="17134" e_stop="17063"/>
            <exon e_start="16838" e_stop="16734"/>
            <exon e_start="16583" e_stop="16491"/>
            <exon e_start="16385" e_stop="16293"/>
            <exon e_start="16121" e_stop="15953"/>
            <exon e_start="15856" e_stop="15655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.398" acc_prob="0.975" e_score="0.973"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.989" acc_prob="0.659" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.224" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.812" e_score="0.988"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="17520" e_stop="17410" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.398" acc_prob="0.975">
            <gDNA_intron_boundary i_start="17409" i_stop="17301" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="17300" e_stop="17223" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17222" i_stop="17135" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17134" e_stop="17063" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.659">
            <gDNA_intron_boundary i_start="17062" i_stop="16839" i_length="224"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16838" e_stop="16734" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.224">
            <gDNA_intron_boundary i_start="16733" i_stop="16584" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16583" e_stop="16491" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16490" i_stop="16386" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16385" e_stop="16293" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16292" i_stop="16122" i_length="171"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="16121" e_stop="15953" e_length="169"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.812">
            <gDNA_intron_boundary i_start="15952" i_stop="15857" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="15856" e_stop="15655" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17520" stop="17410"/>
              <exon start="17300" stop="17223"/>
              <exon start="17134" stop="17063"/>
              <exon start="16838" stop="16734"/>
              <exon start="16583" stop="16491"/>
              <exon start="16385" stop="16293"/>
              <exon start="16121" stop="15953"/>
              <exon start="15856" stop="15655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAGTGCTTCAAAGGTGGTGATTACGAAAGACTCTACACTGATAGTTACTGATGGAAATACTCAAACAGCTGTTTCAAAGAGAGTTTCACAGATACAAAATCTTGTTGAG : AACACAGAAGAAAAATTCCAAAAGAAAATCTTGAACGAAAGAATTGCAAGATTATCCGGTGGTATTGCCGTCATTCAG : GTGGGAGCACAAACACAGGTTGAGTTGAAAGATAAACAACTACGGATTGAGGATGCGCTCAATGCAGCACGG : GCTGCTAGTGAGGAAGGAGTCGTAGTGGGCGGTGGCTGTTGTCTGCTGAGACTATCATCAAAGGTGGATGCTATCAAAGAAACGCTAGACAATGAGGATCAGAAG : ATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAG : ATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAG : GTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCGCCGCCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATA : GTTCAAGGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACTAGCTCATCGTAACGATGCCAACTTCTAACAATATCTTCCATGATTGATGACGAAAACCTCTACCATGAAGAAGTTTGATCATTTTC</gDNA_template>
            <first_frame> G  S  A  S  K  V  V  I  T  K  D  S  T  L  I  V  T  D  G  N  T  Q  T  A  V  S  K  R  V  S  Q  I  Q  N  L  V  E  :  N  T  E  E  K  F  Q  K  K  I  L  N  E  R  I  A  R  L  S  G  G  I  A  V  I  Q  :  V  G  A  Q  T  Q  V  E  L  K  D  K  Q  L  R  I  E  D  A  L  N  A  A  R  :  A  A  S  E  E  G  V  V  V  G  G  G  C  C  L  L  R  L  S  S  K  V  D  A  I  K  E  T  L  D  N  E  D  Q  K  :  I  G  A  D  I  F  K  R  A  L  S  Y  P  A  K  Q  I  A  K  N  A  G  V  N  G  S  I  V  V  E  K  :  I  L  S  V  D  D  M  K  Y  G  Y  N  A  A  R  D  R  Y  E  D  L  M  A  A  K  I  L  D  P  T  K  :  V  V  R  C  C  V  E  H  A  A  A  V  A  K  T  F  L  I  S  D  A  V  V  I  D  I  P  G  P  V  S  R  Q  I  R  P  P  T  P  P  P  P  P  M  P  T  L  G  T  P  R  P  T  N  N  Y   : S  S  R  L  S  G  L  S  G  L  K  A  T  G  L  *  F  R  D  E  R  R  D  K  S  *  L  S  C  W  E  L  K  K  V  L  A  T  T  S  S  S  *  R  C  Q  L  L  T  I  S  S  M  I  D  D  E  N  L  Y  H  E  E  V  *  S  F   </first_frame>
            <second_frame>  A  V  L  Q  R  W  *  L  R  K  T  L  H  *  *  L  L  M  E  I  L  K  Q  L  F  Q  R  E  F  H  R  Y  K  I  L  L  R :   T  Q  K  K  N  S  K  R  K  S  *  T  K  E  L  Q  D  Y  P  V  V  L  P  S  F  R :   W  E  H  K  H  R  L  S  *  K  I  N  N  Y  G  L  R  M  R  S  M  Q  H  G :   L  L  V  R  K  E  S  *  W  A  V  A  V  V  C  *  D  Y  H  Q  R  W  M  L  S  K  K  R  *  T  M  R  I  R  R :   *  E  L  I  F  S  K  E  H  Y  P  I  R  Q  N  R  *  Q  R  M  L  V  *  M  G  A  L  L  *  R  R :   Y  C  Q  L  M  T  *  N  M  D  I  M  L  Q  E  T  D  M  K  I  *  W  L  P  K  F  *  I  L  Q  R :   L  L  D  V  A  W  S  M  Q  Q  Q  L  P  R  R  S  *  Y  Q  M  L  L  S  L  T  S  P  D  Q  Y  L  D  K  *  D  H  Q  H  H  H  R  R  Q  C  Q  L  *  G  L  L  V  L  P  T  T  I  :  V  Q  G  C  L  V  Y  Q  V  *  R  Q  L  V  F  N  S  E  M  K  G  E  I  K  A  N  Y  L  A  G  S  *  R  R  Y  *  L  L  L  A  H  R  N  D  A  N  F  *  Q  Y  L  P  *  L  M  T  K  T  S  T  M  K  K  F  D  H  F  </second_frame>
            <third_frame>   Q  C  F  K  G  G  D  Y  E  R  L  Y  T  D  S  Y  *  W  K  Y  S  N  S  C  F  K  E  S  F  T  D  T  K  S  C  *   : E  H  R  R  K  I  P  K  E  N  L  E  R  K  N  C  K  I  I  R  W  Y  C  R  H  S   : G  G  S  T  N  T  G  *  V  E  R  *  T  T  T  D  *  G  C  A  Q  C  S  T   : G  C  *  *  G  R  S  R  S  G  R  W  L  L  S  A  E  T  I  I  K  G  G  C  Y  Q  R  N  A  R  Q  *  G  S  E   : D  R  S  *  Y  F  Q  K  S  T  I  L  S  G  K  T  D  S  K  E  C  W  C  K  W  E  H  C  C  R  E   : D  I  V  S  *  *  H  E  I  W  I  *  C  C  K  R  Q  I  *  R  F  D  G  C  Q  N  F  R  S  Y  K   : G  C  *  M  L  R  G  A  C  S  S  S  C  Q  D  V  P  D  I  R  C  C  C  H  *  H  P  R  T  S  I  *  T  N  K  T  T  N  T  T  T  A  A  N  A  N  F  R  D  S  S  S  Y  Q  Q  L  * :   F  K  A  V  W  S  I  R  S  K  G  N  W  S  L  I  Q  R  *  K  E  R  *  K  L  I  I  L  L  G  A  K  E  G  T  S  Y  Y  *  L  I  V  T  M  P  T  S  N  N  I  F  H  D  *  *  R  K  P  L  P  *  R  S  L  I  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17520" stop="17410"/>
                    <exon start="17300" stop="17223"/>
                    <exon start="17134" stop="17063"/>
                    <exon start="16838" stop="16734"/>
                    <exon start="16583" stop="16491"/>
                    <exon start="16385" stop="16293"/>
                    <exon start="16121" stop="15953"/>
                    <exon start="15856" stop="15810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSASKVVITKDSTLIVTDGNTQTAVSKRVSQIQNLVENTEEKFQKKILNERIARLSGGIAVIQVGAQTQVELKDKQLRIEDALNAARAASEEGVVVGGGCCLLRLSSKVDAIKETLDNEDQKIGADIFKRALSYPAKQIAKNAGVNGSIVVEKILSVDDMKYGYNAARDRYEDLMAAKILDPTKVVRCCVEHAAAVAKTFLISDAVVIDIPGPVSRQIRPPTPPPPPMPTLGTPRPTNNYSSRLSGLSGLKATGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16754" e_stop="16734"/>
            <exon e_start="16583" e_stop="16491"/>
            <exon e_start="16385" e_stop="15741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.224" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16754" e_stop="16734" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.224">
            <gDNA_intron_boundary i_start="16733" i_stop="16584" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16583" e_stop="16491" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16490" i_stop="16386" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="16385" e_stop="15741" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16754" stop="16734"/>
              <exon start="16583" stop="16491"/>
              <exon start="16385" stop="15741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGACAATGAGGATCAGAAG : ATAGGAGCTGATATTTTCAAAAGAGCACTATCCTATCCGGCAAAACAGATAGCAAAGAATGCTGGTGTAAATGGGAGCATTGTTGTAGAGAAG : ATATTGTCAGTTGATGACATGAAATATGGATATAATGCTGCAAGAGACAGATATGAAGATTTGATGGCTGCCAAAATTTTAGATCCTACAAAGGCAAGATACTATATCTCTTAGTATGGTAGGTGAAGGAATCAAACATCTTAACTGATACTACAAAACATAACTCTATTTTCCAACACATATTCCTCGACTCCTCTATTTATCGATGGTTAACAAGTCTGATTACGTTAGTGCACCATAAACTTCCTTGAAATCGTGAAACAGGTTGTTAGATGTTGCGTGGAGCATGCAGCAGCAGTTGCCAAGACGTTCCTGATATCAGATGCTGTTGTCATTGACATCCCCGGACCAGTATCTAGACAAATAAGACCACCAACACCACCACCGCCGCCAATGCCAACTTTAGGGACTCCTCGTCCTACCAACAACTATAGTAAGTACATTGTCTATAACTCTCCCCATGTCTCTGTATTTGGTCTGATATTTAACTCCCAAAATCCAATGTTCCTATAGCGTAAATGATTTGTAGGTTCAAGGCTGTCTGGTCTATCAGGTCTAAAGGCAACTGGTCTTTAATTCAGAGATGAAAGGAGAGATAAAAGCTAATTATCTTGCTGGGAGCTAAAGAAGGTACTAGCTACTACT</gDNA_template>
            <first_frame> L  D  N  E  D  Q  K  :  I  G  A  D  I  F  K  R  A  L  S  Y  P  A  K  Q  I  A  K  N  A  G  V  N  G  S  I  V  V  E  K  :  I  L  S  V  D  D  M  K  Y  G  Y  N  A  A  R  D  R  Y  E  D  L  M  A  A  K  I  L  D  P  T  K  A  R  Y  Y  I  S  *  Y  G  R  *  R  N  Q  T  S  *  L  I  L  Q  N  I  T  L  F  S  N  T  Y  S  S  T  P  L  F  I  D  G  *  Q  V  *  L  R  *  C  T  I  N  F  L  E  I  V  K  Q  V  V  R  C  C  V  E  H  A  A  A  V  A  K  T  F  L  I  S  D  A  V  V  I  D  I  P  G  P  V  S  R  Q  I  R  P  P  T  P  P  P  P  P  M  P  T  L  G  T  P  R  P  T  N  N  Y  S  K  Y  I  V  Y  N  S  P  H  V  S  V  F  G  L  I  F  N  S  Q  N  P  M  F  L  *  R  K  *  F  V  G  S  R  L  S  G  L  S  G  L  K  A  T  G  L  *  F  R  D  E  R  R  D  K  S  *  L  S  C  W  E  L  K  K  V  L  A  T  T </first_frame>
            <second_frame>  *  T  M  R  I  R  R :   *  E  L  I  F  S  K  E  H  Y  P  I  R  Q  N  R  *  Q  R  M  L  V  *  M  G  A  L  L  *  R  R :   Y  C  Q  L  M  T  *  N  M  D  I  M  L  Q  E  T  D  M  K  I  *  W  L  P  K  F  *  I  L  Q  R  Q  D  T  I  S  L  S  M  V  G  E  G  I  K  H  L  N  *  Y  Y  K  T  *  L  Y  F  P  T  H  I  P  R  L  L  Y  L  S  M  V  N  K  S  D  Y  V  S  A  P  *  T  S  L  K  S  *  N  R  L  L  D  V  A  W  S  M  Q  Q  Q  L  P  R  R  S  *  Y  Q  M  L  L  S  L  T  S  P  D  Q  Y  L  D  K  *  D  H  Q  H  H  H  R  R  Q  C  Q  L  *  G  L  L  V  L  P  T  T  I  V  S  T  L  S  I  T  L  P  M  S  L  Y  L  V  *  Y  L  T  P  K  I  Q  C  S  Y  S  V  N  D  L  *  V  Q  G  C  L  V  Y  Q  V  *  R  Q  L  V  F  N  S  E  M  K  G  E  I  K  A  N  Y  L  A  G  S  *  R  R  Y  *  L  L   </second_frame>
            <third_frame>   R  Q  *  G  S  E   : D  R  S  *  Y  F  Q  K  S  T  I  L  S  G  K  T  D  S  K  E  C  W  C  K  W  E  H  C  C  R  E   : D  I  V  S  *  *  H  E  I  W  I  *  C  C  K  R  Q  I  *  R  F  D  G  C  Q  N  F  R  S  Y  K  G  K  I  L  Y  L  L  V  W  *  V  K  E  S  N  I  L  T  D  T  T  K  H  N  S  I  F  Q  H  I  F  L  D  S  S  I  Y  R  W  L  T  S  L  I  T  L  V  H  H  K  L  P  *  N  R  E  T  G  C  *  M  L  R  G  A  C  S  S  S  C  Q  D  V  P  D  I  R  C  C  C  H  *  H  P  R  T  S  I  *  T  N  K  T  T  N  T  T  T  A  A  N  A  N  F  R  D  S  S  S  Y  Q  Q  L  *  *  V  H  C  L  *  L  S  P  C  L  C  I  W  S  D  I  *  L  P  K  S  N  V  P  I  A  *  M  I  C  R  F  K  A  V  W  S  I  R  S  K  G  N  W  S  L  I  Q  R  *  K  E  R  *  K  L  I  I  L  L  G  A  K  E  G  T  S  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="15873"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTINFLEIVKQVVRCCVEHAAAVAKTFLISDAVVIDIPGPVSRQIRPPTPPPPPMPTLGTPRPTNNYSKYIVYNSPHVSVFGLIFNSQNPMFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16754" stop="16734"/>
                    <exon start="16583" stop="16491"/>
                    <exon start="16385" stop="16272"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDNEDQKIGADIFKRALSYPAKQIAKNAGVNGSIVVEKILSVDDMKYGYNAARDRYEDLMAAKILDPTKARYYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="19419" PGL_stop="18398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19419" e_stop="19305"/>
            <exon e_start="19209" e_stop="19084"/>
            <exon e_start="18665" e_stop="18528"/>
            <exon e_start="18451" e_stop="18398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="19419" e_stop="19305" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19304" i_stop="19210" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="19209" e_stop="19084" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="19083" i_stop="18666" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="18665" e_stop="18528" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18527" i_stop="18452" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18451" e_stop="18398" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19419" stop="19305"/>
              <exon start="19209" stop="19084"/>
              <exon start="18665" stop="18528"/>
              <exon start="18451" stop="18398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGTTCAGTAAATAGAATTTCTAAAAGGGTTTCTTGTTCTATGTTGAACACAAGAGCTATGGCTAAAGAACTGTACTTTAATCATGATGGTTCTACAACAAAGAAGCTTTTG : GCAGGTGTCGATTTGGTGGCAGAGCTGGTTGGTGTAACTTTGGGTCCAAAAGGAAGAAATGTAGTTCTTGGAAATAAGTATGGTCCTCCAAAGATTGTTAATGATGGTGAAACTGTTCTAAAAGAG : ATTCAGCTGGACGATCCTCTGGAATATGTGGGAGTAAAGTTGGTTAGAGAAGCTGGTGCCAAGACTAATAATCTTGCTGGTGATGGTTGCACAACATCTATAGTGCTTGCTCGAGGTCTGATTGCTGAAGGTGTCAAG : GTTACTGCAATGGGCGCAAATGTTGTCCAAGTGTCTCGTGGAATTGAGAAAACT</gDNA_template>
            <first_frame> K  W  F  S  K  *  N  F  *  K  G  F  L  F  Y  V  E  H  K  S  Y  G  *  R  T  V  L  *  S  *  W  F  Y  N  K  E  A  F   : G  R  C  R  F  G  G  R  A  G  W  C  N  F  G  S  K  R  K  K  C  S  S  W  K  *  V  W  S  S  K  D  C  *  *  W  *  N  C  S  K  R   : D  S  A  G  R  S  S  G  I  C  G  S  K  V  G  *  R  S  W  C  Q  D  *  *  S  C  W  *  W  L  H  N  I  Y  S  A  C  S  R  S  D  C  *  R  C  Q   : G  Y  C  N  G  R  K  C  C  P  S  V  S  W  N  *  E  N  </first_frame>
            <second_frame>  N  G  S  V  N  R  I  S  K  R  V  S  C  S  M  L  N  T  R  A  M  A  K  E  L  Y  F  N  H  D  G  S  T  T  K  K  L  L  :  A  G  V  D  L  V  A  E  L  V  G  V  T  L  G  P  K  G  R  N  V  V  L  G  N  K  Y  G  P  P  K  I  V  N  D  G  E  T  V  L  K  E  :  I  Q  L  D  D  P  L  E  Y  V  G  V  K  L  V  R  E  A  G  A  K  T  N  N  L  A  G  D  G  C  T  T  S  I  V  L  A  R  G  L  I  A  E  G  V  K  :  V  T  A  M  G  A  N  V  V  Q  V  S  R  G  I  E  K  T </second_frame>
            <third_frame>   M  V  Q  *  I  E  F  L  K  G  F  L  V  L  C  *  T  Q  E  L  W  L  K  N  C  T  L  I  M  M  V  L  Q  Q  R  S  F  W :   Q  V  S  I  W  W  Q  S  W  L  V  *  L  W  V  Q  K  E  E  M  *  F  L  E  I  S  M  V  L  Q  R  L  L  M  M  V  K  L  F  *  K  R :   F  S  W  T  I  L  W  N  M  W  E  *  S  W  L  E  K  L  V  P  R  L  I  I  L  L  V  M  V  A  Q  H  L  *  C  L  L  E  V  *  L  L  K  V  S  R :   L  L  Q  W  A  Q  M  L  S  K  C  L  V  E  L  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0023M16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19418" stop="19305"/>
                    <exon start="19209" stop="19084"/>
                    <exon start="18665" stop="18528"/>
                    <exon start="18451" stop="18398"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGSVNRISKRVSCSMLNTRAMAKELYFNHDGSTTKKLLAGVDLVAELVGVTLGPKGRNVVLGNKYGPPKIVNDGETVLKEIQLDDPLEYVGVKLVREAGAKTNNLAGDGCTTSIVLARGLIAEGVKVTAMGANVVQVSRGIEKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 63 chains have been computed
$ 
$ memory statistics:
$ 62648 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 1898 bytes was the average size of a spliced alignment
$ 13216 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1888 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 78 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:42:54
-->
