<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:41:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580372" ref_strand="+" ref_description="SGN-E580372 [5615]">
      <seq>cacaagcttaaaggccaaacaccccttacaatccctatttatatctccctaaatccctctcaattttccacatccaactcccatttttcacctcttcctttgcttagtcattacattctctcttgctagtcaaagctcactctccaaagaaacatgtcttattttgggatttgctttgttggtcttcttgcaatggtgtcatctgtttatggttatggtggtggaggttggattaatgctcatgcaactttctatgggggtggggatgcttctggaacaatgggtggggcttgtggatatgggaacctttatagtcaagggtatggtacaaatacagcagctttaagtactgctatgttcaacaatgggttgagctgtggttcttggttttgaattaagatgtgcaagtgatagacaagggtgtttgcctggttctattgtggttacagctacaaatttttgcccacaaaaatgcctccctaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="4159" stop="5742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4459" g_stop="4606" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4607" i_stop="5010" i_length="404">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5011" g_stop="5145" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="283" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5146" i_stop="5237" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5238" g_stop="5442" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="486" r_length="203" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E580372" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4459" e_stop="4606"/>
          <exon e_start="5011" e_stop="5145"/>
          <exon e_start="5238" e_stop="5442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCTTAAAGGCCAAACACCCCTTAAAATCCCTATTTATATCCCCCTAAATCCCTCCCAATTTTCCACACCCAACTCCCA-TTTTCA-CTCTTCATTTGCTTAGTCACTACATTCCCTCTTGCTAGAGTCAAGGCTCACTCTCCAAAGTAAGAGTCTTTCTTCTCTTTTCTTGAAAATGCAACAATGAAACAACACAATTTTCAACATTTCTTGAATGTATATCTTAGAACATGCTAAAAAGTTGTAATCTTTATGCAAAAAAATAAACATAGTTGAAGAACACCATTTTCAAGATTTGTTAACATTCTTGAGTGTAATGCCAAAAAGTTGTAATCTTTATTCAGACAACATGGTTTAATTAACAGTTTTTCTACTTTGAAGAACACCATTTTCAAGATTTGTTAACATTCTTGAGTGTAATGCCAAAAAGTTGTAATCTTTATTCAGACAACATGGTTTAATTAACAGTTTTTCTACTTTGAAGAACACCATTTTCAAGATTTATTAACATTCTTGAGTGTAATGCTAAAAAGTTGTAATCTTTATGCAGGAAACATGGCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGGGTATGCAACATTTCCTTTAAATTCCCCAAAAGTTTGATTTTTGAGTAAATTTAGGGTATAAATTTGTGCTGATTCTTGATTTCTTTGAATAGGTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTT-GTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAA</genome_strand>
        <mrna_strand>CACAAGCTTAAAGGCCAAACACCCCTTACAATCCCTATTTATATCTCCCTAAATCCCTCTCAATTTTCCACATCCAACTCCCATTTTTCACCTCTTCCTTTGCTTAGTCATTACATTCTCTCTTGCT--AGTCAAAGCTCACTCTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................GAAACATGTCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGTGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGGGGTGGGGATGCTTCTGGAACAATGG............................................................................................GTGGGGCTTGTGGATATGGGAACCTTTATAGTCAAGGGTATGGTACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGGTTTTGAATTAAGATGTGCAAGTGATAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACAGCTACAAATTTTTGCCCA-CAAA-AATG-CCTCCCTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744681" ref_strand="+" ref_description="SGN-E744681 [GI|30519753]">
      <seq>ggggtttatggttatggtggaggaggttggattgatgctcatgcaactttttatgggggtggtgatgcttctggaacaatgggtggggcttgtggatatgggaatctttatagtcaagggtatggcacaaatacagcagctttaagtactgctatgttcaacaatgggttgagctgtggttcttgttttgaattaaggtgtgtaaatgacagacaagggtgtttgcctggttctattgtggttactgctacaaatttttgcccaccaaacaatgccctccctaataatgcaggtggctggtgtaatcctccacttcaccattttgacctctctcagcctattttccaacacattgctcattacaaagctggaattgtccctgttgcttatagaagggtaccctgtagaagaaggggaggaataaggttcacaatcaatggacactcatacttcaacttagtactagtaacaaacgttggtggtggtggtgatgttcattcagtagctgttaaaggatcaagaacaggttggcagccaatgtcaagaaactggggacaaaactggcaaaacaacaacgaccttaatggacaaacactatcatttaaggttacaacaggtgatggtagaagtttgatctcatacaatgttgcacctgctcactggtcatttggacagacatatactggtgctcaattccactaaaaaaaggcattaaatggggttttttttttcttcaagtttttgaaagtatatttactagaattactattatcattactagtattagtatgcatactgatttggtcactagtattattgtgactatttagtatagaggtattttggttgtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttactttggggaccctaatttttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccncccccagttggtaggtgggggtatttttggcaactttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagaaccntttaactagtaatgattcagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacnggttncaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="4767" stop="7611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5064" g_stop="5145" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5146" i_stop="5237" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5238" g_stop="5550" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="395" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5551" i_stop="6427" i_length="877">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6428" g_stop="7308" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="1249" r_length="854" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1255" polyA_stop="1280"/>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E744681" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1276</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5064" e_stop="5145"/>
          <exon e_start="5238" e_stop="5550"/>
          <exon e_start="6428" e_stop="7308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGGGTATGCAACATTTCCTTTAAATTCCCCAAAAGTTTGATTTTTGAGTAAATTTAGGGTATAAATTTGTGCTGATTCTTGATTTCTTTGAATAGGTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAGGTAAATTCTTGGTAAAAATATGTTAGTTGTAGAACTATATGCTGTTTGTATCTTGCTATGTATGTATGATGTTGTTTGAGTACTATAAAAGAGTGGCAAGGAGAGTTTTGTCTTTTCACAAATGCTAAACCTTAGTCATGTCTAAATTGCTTAAGCCCAAAGGTTTGAAATTTCTAAATGGTCCCTTTTAAATGACCTTAATTTACTTGTGCATGCTAATAGAAAAATGAAATGGTGGAACCACATGGTGTGGACCCTTTTGATAAAGGTTTTAACTTTATCACAAGAAGTTTCCCATTTGGCTATTTTCAATGGAGTACTCTTTAGCATTTACTTCTTTCTTGGTTGTTGTAATAGTAGAAGATTCATAAAGTTACATATATTGTTCCCATTTGTCTCTTTACTTGTTTCAATTGTGCTCTTTATCCTTGACTTGTTTCTTAAATTTGGTAAAACTTGGAAAAGCATGAGAAACAAAGTTACAAACTTTAACACCATATAAAAACATAACATAACCAATCTTGCAAATTTTAATAGCTTAGTTTGTTGACAAGCCATACCTTTACCCTATGAACAATCTTGATAATCTTATTAGCTTAGTAAGTTGACTATCTGAAGTTTCACGTTTCGACAAATCTTGTTTATTTTAGTAGCTTAATTGTCTCACTATCTAGACTTTCATATTATACAACCAATCTTAGTTGTTAGAATACCTGAACTTTTTATGTTATGACTAATCTTGACAATCTCAGTAGCTCAATTGGTTGACTCCCTGAACTTTTCATGTTATAACTAATCTTGACAATCTTAGTAGCTTAGTTAGTTGACTATCTGAATTTCCATGTCTCAACTAATCTTTTGTCGAAATAAATTACAGGGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GGGGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG............................................................................................GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAACGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACGACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTA-T--TATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTAC-TTTGGGGACCCTAATTTTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCNCCCCCAGTTGGTA----------------------GGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCNTTTAACTAGTAATGATTC-AGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303220" ref_strand="+" ref_description="SGN-E303220 [cLEX-5-I11]">
      <seq>caacacattgctcattacaaagctggaattgtccctgttgcttatagaagggtaccctgtagaagaaggggaggaataaggttcacaatcaatggacactcatacttcaacttagtactagtaacaaatgttggtggtggtggtgatgttcattcagtagctgttaaaggatcaagaacaggttggcagccaatgtcaagaaactggggacaaaactggcaaaacaacaacaaccttaatggacaaacactatcatttaaggttacaacaggtgatggtagaagtttgatctcatacaatgttgcacctgctcactggtcatttggacagacatatactggtgctcaattccactaaaaaaaggcattaaatggggctttttttttcttcaagtttttgaaagtatatttactagaattactattatcattactagtattagtatgcatactgatttggtcactagtattagtattgtgactatttagtatacaggtattttggttgtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5201" stop="7234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5501" g_stop="5550" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5551" i_stop="6427" i_length="877">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6428" g_stop="6934" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="557" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E303220" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5501" e_stop="5550"/>
          <exon e_start="6428" e_stop="6934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAGGTAAATTCTTGGTAAAAATATGTTAGTTGTAGAACTATATGCTGTTTGTATCTTGCTATGTATGTATGATGTTGTTTGAGTACTATAAAAGAGTGGCAAGGAGAGTTTTGTCTTTTCACAAATGCTAAACCTTAGTCATGTCTAAATTGCTTAAGCCCAAAGGTTTGAAATTTCTAAATGGTCCCTTTTAAATGACCTTAATTTACTTGTGCATGCTAATAGAAAAATGAAATGGTGGAACCACATGGTGTGGACCCTTTTGATAAAGGTTTTAACTTTATCACAAGAAGTTTCCCATTTGGCTATTTTCAATGGAGTACTCTTTAGCATTTACTTCTTTCTTGGTTGTTGTAATAGTAGAAGATTCATAAAGTTACATATATTGTTCCCATTTGTCTCTTTACTTGTTTCAATTGTGCTCTTTATCCTTGACTTGTTTCTTAAATTTGGTAAAACTTGGAAAAGCATGAGAAACAAAGTTACAAACTTTAACACCATATAAAAACATAACATAACCAATCTTGCAAATTTTAATAGCTTAGTTTGTTGACAAGCCATACCTTTACCCTATGAACAATCTTGATAATCTTATTAGCTTAGTAAGTTGACTATCTGAAGTTTCACGTTTCGACAAATCTTGTTTATTTTAGTAGCTTAATTGTCTCACTATCTAGACTTTCATATTATACAACCAATCTTAGTTGTTAGAATACCTGAACTTTTTATGTTATGACTAATCTTGACAATCTCAGTAGCTCAATTGGTTGACTCCCTGAACTTTTCATGTTATAACTAATCTTGACAATCTTAGTAGCTTAGTTAGTTGACTATCTGAATTTCCATGTCTCAACTAATCTTTTGTCGAAATAAATTACAGGGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTA</genome_strand>
        <mrna_strand>CAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGCTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATACAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317861" ref_strand="-" ref_description="SGN-E317861 [cTOA-30-B18]">
      <seq>gtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttacttttggggaccctaattcttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccacccgcagttggtaggtgggggtgggggtggggtggggtgggggtatttttgggcctttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagacccatttaactagtaatgattcaagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacaaacaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="6584" stop="7614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6884" g_stop="7308" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E317861" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6884" e_stop="7308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGG-GCCTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGACCCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461942" ref_strand="+" ref_description="SGN-E461942 [cPRO-10-G11]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttgtttccagtgttgagctaacattgaaccctaaaattgattacatgttgagtttgggattcgaacgcgatgatgtggttaatatggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12922" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E461942" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGTTTCCAGTGTTGAGCTAACATTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTCGAACGCGATGATGTGGTTAATATGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465764" ref_strand="+" ref_description="SGN-E465764 [cPRO-22-M11]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttgtttccagtgttgagctaacattgaaccctaaaattgattacatgttgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12886" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E465764" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGTTTCCAGTGTTGAGCTAACATTGAACCCTAAAATTGATTACATGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466012" ref_strand="+" ref_description="SGN-E466012 [cPRO-22-N14]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcaacaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttggttccagtgntgagctaacattgaaccctaaaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12873" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E466012" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAACAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGGTTCCAGTGNTGAGCTAACATTGAACCCTAAAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462819" ref_strand="+" ref_description="SGN-E462819 [cPRO-12-F12]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactggtttgcttgtttccagtgttgagctacattgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12861" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E462819" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACC</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGGTTTGCTTGTTTCCAGTGTTGAGCT-ACATTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430473" ref_strand="+" ref_description="SGN-E430473 [STM-53-B16]">
      <seq>atctttctcaataaaaaccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12735" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E430473" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATAAAA-ACCA-ACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462119" ref_strand="+" ref_description="SGN-E462119 [cPRO-10-N13]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11886" stop="13012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12712" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E462119" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTAT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703862" ref_strand="+" ref_description="SGN-E703862 [FA22CG01]">
      <seq>ccttacttcaactgactgtggtctcaaattcagggagaaaatactctatcttcaagaactcaatatcaatcccagtaaagttcttcaactaaacccccatttacgatcagcaacgctcgattcaatcagatctgttgaagtatgtctgttttcaatggggattgaacggtcggcaattggtcgaatacttgatatgcatcctcagcttttaacctccgacccatatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgatgtccgagaattcttgtttgtagtgttgaagatcaattgaaacccacatttgagtttttgaaggaatttgggtttgtgggtcagaatcgaattacttgtcagactactgttttgcttgtgtccagtgttgagctaactttgaaccctaaaattgattacatgttgagtttgggatttgaactcgatgatgtggctaatatggttttgagatcacctgggttgttgacatttagtattgagaaaaactttaggccaaaagttgagtattttttgaaggagatgaatggggatataagggaattgaagaggtttcctcagtacttttcgtttagtttggagaggaagattaagcctcggcataggcttttggtggagcatgggtttacgctgtctttatcggagatgttgaaggttagtgatggagaattcaatgccagattgatttgaatgcgattgaggttagtggatgataagcaaatgtagtacgtaattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12110" stop="13513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12410" g_stop="13213" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E703862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12410" e_stop="13213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</genome_strand>
        <mrna_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTTGAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430474" ref_strand="+" ref_description="SGN-E430474 [STM-53-B16]">
      <seq>ctctaatgattctcaaacatatacaaaaatcgactctactcatagaaaagaattgcttacttactacaattgcttatcttccactatcctcaatcgcatttcaatcaatctggcattgaattcaccatcactaaccttcaacatctccgataaagatagcgaaaacccatgctccaccaaaagcctatgccgaggcttaatcttcctctccaaactaaacgaaaagtactgaggaaacctcttcaattcccctatatccccattcatctccttcaaaaaatactcaactttcggcctaaaatttttctcaatgctaaatgtcaacaacccaggtgacctcaaaaccatattaaccacatcatcgcgttcgaatcccaaactcaacatgtaatcaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="-" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13562" stop="12563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13262" g_stop="12863" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="-" ref_id="SGN-E430474" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13262" e_stop="12863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATGAGTCTCCAACATAGAC-AAACTCGACTCTAACCATAGAAAAAGAGTTAATTACGTACTACATTTGCTTATCATCCACTAACCTCAATCGCATTTCAATCAATCTGGCATTGAATTCTCCATCACTAACCTTCAACATCTCCGATAAAGACAGCGTAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCTTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTTGGCCTAAAGTTTTTCTCAATACTAAATGTCAACAACCCAGGTGATCTCAAAACCATATTAGCCACATCATCGAGTTCAAATCCCAAACTCAACATGTAATCAATTTTA</genome_strand>
        <mrna_strand>CTCTAATGATTCTCAAACATATACAAAAATCGACTCTACTCATAG-AAAAGAATTGCTTACTTACTACAATTGCTTATCTTCCACTATCCTCAATCGCATTTCAATCAATCTGGCATTGAATTCACCATCACTAACCTTCAACATCTCCGATAAAGATAGCGAAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCCTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTCGGCCTAAAATTTTTCTCAATGCTAAATGTCAACAACCCAGGTGACCTCAAAACCATATTAACCACATCATCGCGTTCGAATCCCAAACTCAACATGTAATCAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468080" ref_strand="+" ref_description="SGN-E468080 [cSTB-2-M22]">
      <seq>ggagattcaattccgaaagaactcttgagagcctatcgaagagtctcaagttgcaccttattgtcttctcaaagaattatgctaccatctaggtggtgcttgaatgaactagtgaagatcatggaatgcaaagatgaagaaaatggacaaacagtcatacccaatcttctatgatgtggatccatcacatgttcgaaaccaaagtgaaagcctttggagcagcatttgccgaaccatgaattaaagtataaggatgatgttgaggggatgccaaaaggtgccaaagatggagaaatgccctaactgttgccgcaaatctaaaaggatatgatatccctgacgggattgaatcagagaatattcaacagatcgtagactgcatctcttccaagtttcgcacaaatgcttattctttatcttttttgcaagatgttgtgggaataaacgatcacttagagaaactaaaatccaaacttcaaatggaaatcaacgatgttcggattttagggatctggggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15218" stop="16604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15518" g_stop="15852" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15853" i_stop="16126" i_length="274">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16127" g_stop="16304" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="521" r_length="178" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E468080" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15518" e_stop="15852"/>
          <exon e_start="16127" e_stop="16304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTCAATTCCAAAAGAACTCTTGAGAG-CTATAGAAGATTCTCAAGTTGCA-CTTATCATTTTCTCAAAGAATTATGCTA-CATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGAGGAAGAAAATGGACAAACAGTCATA-CCGATCTTTTATAATGTGGATCCATCACATGTTCGATACCAAACTGAAAG-CTTTGGAGCAGCATTTGCC-AAACACGAATCAAAGTATAAGGATGATGTTGAGGGGATG-CAGAAGGTG-CAAAGATGGAGAACTGCCCTAACTGCTGCCGCAAATCTAAAAGGATATGATATCCGTAACGGGTTAGTTGAATACACATAATTACTTTTAATGTTTTTACTGTTAAAAAGGCATAGTCCAATCAATTTAATTAGAGAAGATACATAAAAGTCCAAAAAACTATTCAAGTTTTGCAACTTCCATACTTGAAAACTATAGAGTATTGTTATTACCTGAACTATTCTATTTCCTATTTAATACCCTGCTGATTATTAACAATATATATAGAGTATATGAAATACTTGTTGGTATTTGACTTTCTTACATTGTCCACAATCAATTTTCTTCTTTATGTAGGATTGAATCAGAGAATATTCAGCAGATCGTAGATTGCATCTCTTCCAAATTTTGTACGAATGCTTATTCTTTATCTTTTTTGCAAGATATTGTGGGAATAAATGCTCACTTAGAGAAACTAAAATCGAAACTTCAAATAGAAATCAATGATGTTCGGATTTTAGGGATCTGGGGAATA</genome_strand>
        <mrna_strand>GGAGATTCAATTCCGAAAGAACTCTTGAGAGCCTATCGAAGAGTCTCAAGTTGCACCTTATTGTCTTCTCAAAGAATTATGCTACCATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGATGAAGAAAATGGACAAACAGTCATACCCAATCTTCTATGATGTGGATCCATCACATGTTCGAAACCAAAGTGAAAGCCTTTGGAGCAGCATTTGCCGAACCATGAATTAAAGTATAAGGATGATGTTGAGGGGATGCCAAAAGGTGCCAAAGATGGAGAAATGCCCTAACTGTTGCCGCAAATCTAAAAGGATATGATATCCCTGACGG..................................................................................................................................................................................................................................................................................GATTGAATCAGAGAATATTCAACAGATCGTAGACTGCATCTCTTCCAAGTTTCGCACAAATGCTTATTCTTTATCTTTTTTGCAAGATGTTGTGGGAATAAACGATCACTTAGAGAAACTAAAATCCAAACTTCAAATGGAAATCAACGATGTTCGGATTTTAGGGATCTGGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468081" ref_strand="-" ref_description="SGN-E468081 [cSTB-2-M22]">
      <seq>atcatgaagctatgcaattattcaataagcatgcttttaaaaaagaagatccagatgagagttttaagaagttctcattggaggtagtaaatcacgctaaaggccttcctttagccctcaaggtgtggggttctttattgcataaaaagtgtctaactttgtggagaaaaactgtagagcagataaagaaaaactctaattcagaaattgttaaaaaactcaaaataagttatgatgggttggagctcgaagagcaagagatatttctagatattgcatgtttattccgtggaaaaaaaagaaaagaagtcatgcaaattcttgagagttgtgactttggagctgaatacggattgaatgttctgattaataaatctcttgtgttcatctctgaaaataatatgattgaaatggcatgatttgattagagatatgggtagatatgtggtgaaaatgcaaaagcttccgaaaaaacgtagcagaatatgggatgttgaagatttcaaaaaagtgatgatagactatacagtaagtaagctaaacaatgcaataatatttaatttctaatttttatatttcaaagacgtataagccaatcaattccaattacttgttcctcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0003C20-FONp9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0003C20.1" temp_strand="+" temp_description="C05HBa0003C20.1  AC212299.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0003C20 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="16390" stop="17596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16690" g_stop="17288" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="632"/>
      <MATCH_line gen_id="C05HBa0003C20.1" gen_strand="+" ref_id="SGN-E468081" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0003C20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16690" e_stop="17288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAAGCTATGCAATTATTCAATATGCATGCTTTTAAAAAAGAAGTTCCAAATGAGGATTTTAAGGAGTTGGCGTTAGAGATAGTAAATCACGCTAAAGGCCTCCCTTTAGCCCTCAAGGTGTGGGGCTGTTTATTGCATAAAAAAAATCTCTCTTTATGGAAAATAACAGTAGAGCAAATAAAGAAAGACTCTAATTCAGAAATTGTTGAACAACTCAAAATAAGTTATGATGGGTTGGAGTCCGAAGAGCAGGAAATATTTTTAGATATAGCATGTTTCTTCCGCGGAGAGAAAAGAAAAGAGGTCATGCAAATTCTTAAGAGTTGTGACTTTGGAGCTGAATACGGATTGGATGTTCTGATTAATAAATCTCTTGTGTTCATATCTGAAAATGACAGGATTGAAAT-GCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCAGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAGAAGTGATGATAGACTATACGGTAAGTAAGCTTAACAATGCAATGATATTTAATTTCTAATTTTTATATTCCAAGGAACTTATAGGCTAATCA</genome_strand>
        <mrna_strand>ATCATGAAGCTATGCAATTATTCAATAAGCATGCTTTTAAAAAAGAAGATCCAGATGAGAGTTTTAAGAAGTTCTCATTGGAGGTAGTAAATCACGCTAAAGGCCTTCCTTTAGCCCTCAAGGTGTGGGGTTCTTTATTGCATAAAAAGTGTCTAACTTTGTGGAGAAAAACTGTAGAGCAGATAAAGAAAAACTCTAATTCAGAAATTGTTAAAAAACTCAAAATAAGTTATGATGGGTTGGAGCTCGAAGAGCAAGAGATATTTCTAGATATTGCATGTTTATTCCGTGGAAAAAAAAGAAAAGAAGTCATGCAAATTCTTGAGAGTTGTGACTTTGGAGCTGAATACGGATTGAATGTTCTGATTAATAAATCTCTTGTGTTCATCTCTGAAAATAATATGATTGAAATGGCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCCGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAAAAGTGATGATAGACTATACAGTAAGTAAGCTAAACAATGCAATAATATTTAATTTCTAATTTTTATATTTCAAAG-ACGTATAAGCCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4459" PGL_stop="7308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4459" e_stop="4606"/>
            <exon e_start="5011" e_stop="5145"/>
            <exon e_start="5238" e_stop="5550"/>
            <exon e_start="6428" e_stop="7308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.960" e_score="0.905"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="4459" e_stop="4606" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.960">
            <gDNA_intron_boundary i_start="4607" i_stop="5010" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="5011" e_stop="5145" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5146" i_stop="5237" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5238" e_stop="5550" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5551" i_stop="6427" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="6428" e_stop="7308" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4459" stop="4606"/>
              <exon start="5011" stop="5145"/>
              <exon start="5238" stop="5442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5064" stop="5145"/>
              <exon start="5238" stop="5550"/>
              <exon start="6428" stop="7308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5501" stop="5550"/>
              <exon start="6428" stop="6934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6884" stop="7308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAGCTTAAAGGCCAAACACCCCTTAAAATCCCTATTTATATCCCCCTAAATCCCTCCCAATTTTCCACACCCAACTCCCATTTTCACTCTTCATTTGCTTAGTCACTACATTCCCTCTTGCTAGAGTCAAGGCTCACTCTCCAAA : GAAACATGGCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG : GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG : GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</gDNA_template>
            <first_frame> H  K  L  K  G  Q  T  P  L  K  I  P  I  Y  I  P  L  N  P  S  Q  F  S  T  P  N  S  H  F  H  S  S  F  A  *  S  L  H  S  L  L  L  E  S  R  L  T  L  Q   : R  N  M  A  Y  F  G  I  C  F  V  G  L  L  A  M  V  S  S  V  Y  G  Y  G  G  G  G  W  I  D  A  H  A  T  F  Y  G  G  G  D  A  S  G  T  M   : G  G  A  C  G  Y  G  N  L  Y  S  Q  G  Y  G  T  N  T  A  A  L  S  T  A  M  F  N  N  G  L  S  C  G  S  C  F  E  L  R  C  V  N  D  R  Q  G  C  L  P  G  S  I  V  V  T  A  T  N  F  C  P  P  N  N  A  L  P  N  N  A  G  G  W  C  N  P  P  L  H  H  F  D  L  S  Q  P  I  F  Q  H  I  A  H  Y  K  A  G  I  V  P  V  A  Y  R  R :   V  P  C  R  R  R  G  G  I  R  F  T  I  N  G  H  S  Y  F  N  L  V  L  V  T  N  V  G  G  G  G  D  V  H  S  V  A  V  K  G  S  R  T  G  W  Q  P  M  S  R  N  W  G  Q  N  W  Q  N  N  N  N  L  N  G  Q  T  L  S  F  K  V  T  T  G  D  G  R  S  L  I  S  Y  N  V  A  P  A  H  W  S  F  G  Q  T  Y  T  G  A  Q  F  H  *  K  K  A  L  N  G  V  F  F  F  F  K  F  L  K  V  Y  L  L  E  L  L  L  S  L  L  V  L  V  C  I  L  I  W  S  L  V  L  V  L  *  L  F  S  I  E  V  F  W  L  *  R  C  G  L  *  G  K  K  K  *  K  K  G  I  F  *  N  C  P  L  F  H  F  D  *  I  K  G  I  L  L  L  G  T  L  I  L  E  A  T  L  S  S  F  F  W  F  W  R  V  F  W  *  F  F  L  L  L  R  A  E  V  E  S  S  G  G  L  L  P  P  A  V  G  R  W  G  W  G  W  G  G  V  G  V  F  L  A  T  F  F  L  S  F  S  L  *  L  K  M  D  F  V  C  V  R  L  *  N  V  K  N  H  L  T  S  N  D  S  R  R  L  W  L  C  I  L  T  F  V  M  P  L  S  V  L  I  C  L  T  </first_frame>
            <second_frame>  T  S  L  K  A  K  H  P  L  K  S  L  F  I  S  P  *  I  P  P  N  F  P  H  P  T  P  I  F  T  L  H  L  L  S  H  Y  I  P  S  C  *  S  Q  G  S  L  S  K  :  E  T  W  L  I  L  G  F  A  L  L  V  F  L  Q  W  C  H  L  F  M  V  M  V  E  E  V  G  L  M  L  M  Q  L  F  M  G  V  V  M  L  L  E  Q  W  :  V  G  L  V  D  M  G  I  F  I  V  K  G  M  A  Q  I  Q  Q  L  *  V  L  L  C  S  T  M  G  *  A  V  V  L  V  L  N  *  G  V  *  M  T  D  K  G  V  C  L  V  L  L  W  L  L  L  Q  I  F  A  H  Q  T  M  P  S  L  I  M  Q  V  A  G  V  I  L  H  F  T  I  L  T  S  L  S  L  F  S  N  T  L  L  I  T  K  L  E  L  S  L  L  L  I  E   : G  Y  P  V  E  E  G  E  E  *  G  S  Q  S  M  D  T  H  T  S  T  *  Y  *  *  Q  M  L  V  V  V  V  M  F  I  Q  *  L  L  K  D  Q  E  Q  V  G  S  Q  C  Q  E  T  G  D  K  T  G  K  T  T  T  T  L  M  D  K  H  Y  H  L  R  L  Q  Q  V  M  V  E  V  *  S  H  T  M  L  H  L  L  T  G  H  L  D  R  H  I  L  V  L  N  S  T  K  K  R  H  *  M  G  F  F  F  S  S  S  F  *  K  Y  I  Y  *  N  Y  Y  Y  H  Y  *  Y  *  Y  A  Y  *  F  G  H  *  Y  *  Y  C  D  Y  L  V  *  R  Y  F  G  C  K  G  V  V  F  K  V  K  K  N  E  K  R  A  Y  F  K  I  V  L  F  F  I  L  I  E  L  R  V  S  Y  F  W  G  P  *  F  L  R  P  H  L  V  V  F  F  G  F  G  G  Y  F  G  N  F  S  F  C  *  G  Q  K  W  K  A  V  V  D  F  Y  H  P  Q  L  V  G  G  G  G  G  G  V  G  W  G  Y  F  W  Q  L  F  F  *  A  S  A  C  S  *  R  W  T  L  Y  V  *  D  Y  E  M  *  R  T  I  *  L  V  M  I  Q  E  D  Y  G  Y  V  F  *  L  L  *  C  L  S  R  F  *  F  V  *  Q </second_frame>
            <third_frame>   Q  A  *  R  P  N  T  P  *  N  P  Y  L  Y  P  P  K  S  L  P  I  F  H  T  Q  L  P  F  S  L  F  I  C  L  V  T  T  F  P  L  A  R  V  K  A  H  S  P  K :   K  H  G  L  F  W  D  L  L  C  W  S  S  C  N  G  V  I  C  L  W  L  W  W  R  R  L  D  *  C  S  C  N  F  L  W  G  W  *  C  F  W  N  N  G :   W  G  L  W  I  W  E  S  L  *  S  R  V  W  H  K  Y  S  S  F  K  Y  C  Y  V  Q  Q  W  V  E  L  W  F  L  F  *  I  K  V  C  K  *  Q  T  R  V  F  A  W  F  Y  C  G  Y  C  Y  K  F  L  P  T  K  Q  C  P  P  *  *  C  R  W  L  V  *  S  S  T  S  P  F  *  P  L  S  A  Y  F  P  T  H  C  S  L  Q  S  W  N  C  P  C  C  L  *  K  :  G  T  L  *  K  K  G  R  N  K  V  H  N  Q  W  T  L  I  L  Q  L  S  T  S  N  K  C  W  W  W  W  *  C  S  F  S  S  C  *  R  I  K  N  R  L  A  A  N  V  K  K  L  G  T  K  L  A  K  Q  Q  Q  P  *  W  T  N  T  I  I  *  G  Y  N  R  *  W  *  K  F  D  L  I  Q  C  C  T  C  S  L  V  I  W  T  D  I  Y  W  C  S  I  P  L  K  K  G  I  K  W  G  F  F  F  L  Q  V  F  E  S  I  F  T  R  I  T  I  I  I  T  S  I  S  M  H  T  D  L  V  T  S  I  S  I  V  T  I  *  Y  R  G  I  L  V  V  K  V  W  S  L  R  *  K  K  M  K  K  G  H  I  L  K  L  S  S  F  S  F  *  L  N  *  G  Y  L  T  F  G  D  P  N  S  *  G  H  T  *  *  F  F  L  V  L  E  G  I  L  V  I  F  P  S  V  K  G  R  S  G  K  Q  W  W  T  F  T  T  R  S  W  *  V  G  V  G  V  G  W  G  G  G  I  F  G  N  F  F  F  K  L  Q  P  V  A  E  D  G  L  C  M  C  E  T  M  K  C  K  E  P  F  N  *  *  *  F  K  K  I  M  V  M  Y  F  N  F  C  N  A  S  L  G  F  N  L  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0003C20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4564" stop="4606"/>
                    <exon start="5011" stop="5145"/>
                    <exon start="5238" stop="5550"/>
                    <exon start="6428" stop="6734"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHSLLLESRLTLQRNMAYFGICFVGLLAMVSSVYGYGGGGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCFELRCVNDRQGCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQHIAHYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGGGDVHSVAVKGSRTGWQPMSRNWGQNWQNNNNLNGQTLSFKVTTGDGRSLISYNVAPAHWSFGQTYTGAQFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12186" PGL_stop="13213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12186" e_stop="13213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12186" e_stop="13213" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12186" stop="12712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12410" stop="13213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</gDNA_template>
            <first_frame> I  F  V  D  K  T  P  N  T  K  H  A  K  R  V  L  S  S  S  M  L  L  Q  L  P  E  M  L  T  W  I  N  P  P  K  T  L  I  P  F  S  S  I  I  P  N  P  S  S  P  I  P  I  C  S  I  S  P  K  P  T  K  T  S  L  K  S  L  H  L  S  P  Q  H  T  L  T  S  T  D  C  G  L  K  F  R  E  K  I  L  Y  L  Q  E  L  N  I  N  P  S  K  V  L  Q  L  N  P  H  L  R  S  A  T  L  D  S  I  R  S  V  E  V  C  L  F  S  M  G  I  E  R  S  A  I  G  R  I  L  D  M  H  P  Q  L  L  T  S  D  P  Y  I  H  L  Y  P  I  F  D  F  L  L  N  D  V  V  I  P  F  H  D  I  R  K  S  I  I  R  C  P  R  I  L  V  C  S  V  E  D  Q  L  K  P  T  F  E  F  L  K  E  F  G  F  V  G  Q  N  R  I  T  C  Q  T  T  V  L  L  V  S  S  V  E  L  T  L  N  P  K  I  D  Y  M  L  S  L  G  F  E  L  D  D  V  A  N  M  V  L  R  S  P  G  L  L  T  F  S  I  E  K  N  F  R  P  K  V  E  Y  F  L  K  E  M  N  G  D  I  R  E  L  K  R  F  P  Q  Y  F  S  F  S  L  E  R  K  I  K  P  R  H  R  L  L  V  E  H  G  F  T  L  S  L  S  E  M  L  K  V  S  D  G  E  F  N  A  R  L  I  E  M  R  L  R  L  V  D  D  K  Q  M  *  Y  V  I  N   </first_frame>
            <second_frame>  S  L  L  I  K  L  Q  T  Q  S  M  Q  K  E  S  F  L  L  Q  C  Y  F  S  Y  L  R  C  *  H  G  *  T  L  P  K  P  *  S  P  F  L  P  S  S  Q  T  L  L  L  Q  Y  P  F  A  Q  F  L  Q  N  P  Q  K  L  H  S  N  P  F  T  F  L  L  S  T  P  L  L  Q  L  T  V  V  S  N  S  G  R  K  Y  S  I  F  K  N  S  I  S  I  P  V  K  F  F  N  *  T  P  I  Y  D  Q  Q  R  S  I  Q  S  D  L  L  K  Y  V  C  F  Q  W  G  L  N  G  R  Q  L  V  E  Y  L  I  C  I  L  S  F  *  P  P  T  H  I  S  T  F  T  Q  F  S  I  S  C  *  T  T  S  L  S  L  S  M  T  F  G  N  P  L  S  D  V  R  E  F  L  F  V  V  L  K  I  N  *  N  P  H  L  S  F  *  R  N  L  G  L  W  V  R  I  E  L  L  V  R  L  L  F  C  L  C  P  V  L  S  *  L  *  T  L  K  L  I  T  C  *  V  W  D  L  N  S  M  M  W  L  I  W  F  *  D  H  L  G  C  *  H  L  V  L  R  K  T  L  G  Q  K  L  S  I  F  *  R  R  *  M  G  I  *  G  N  *  R  G  F  L  S  T  F  R  L  V  W  R  G  R  L  S  L  G  I  G  F  W  W  S  M  G  L  R  C  L  Y  R  R  C  *  R  L  V  M  E  N  S  M  P  D  *  L  K  C  D  *  G  *  W  M  I  S  K  C  S  T  *  L  T  </second_frame>
            <third_frame>   L  C  *  *  N  S  K  H  K  A  C  K  K  S  P  F  F  F  N  V  T  S  A  T  *  D  A  N  M  D  K  P  S  Q  N  P  N  P  L  F  F  H  H  P  K  P  F  F  S  N  T  H  L  L  N  F  S  K  T  H  K  N  F  T  Q  I  P  S  P  F  S  S  A  H  P  Y  F  N  *  L  W  S  Q  I  Q  G  E  N  T  L  S  S  R  T  Q  Y  Q  S  Q  *  S  S  S  T  K  P  P  F  T  I  S  N  A  R  F  N  Q  I  C  *  S  M  S  V  F  N  G  D  *  T  V  G  N  W  S  N  T  *  Y  A  S  S  A  F  N  L  R  P  I  Y  P  P  L  P  N  F  R  F  L  V  K  R  R  R  Y  P  F  P  *  H  S  E  I  H  Y  P  M  S  E  N  S  C  L  *  C  *  R  S  I  E  T  H  I  *  V  F  E  G  I  W  V  C  G  S  E  S  N  Y  L  S  D  Y  C  F  A  C  V  Q  C  *  A  N  F  E  P  *  N  *  L  H  V  E  F  G  I  *  T  R  *  C  G  *  Y  G  F  E  I  T  W  V  V  D  I  *  Y  *  E  K  L  *  A  K  S  *  V  F  F  E  G  D  E  W  G  Y  K  G  I  E  E  V  S  S  V  L  F  V  *  F  G  E  E  D  *  A  S  A  *  A  F  G  G  A  W  V  Y  A  V  F  I  G  D  V  E  G  *  *  W  R  I  Q  C  Q  I  D  *  N  A  I  E  V  S  G  *  *  A  N  V  V  R  N  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0003C20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12186" stop="13199"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVDKTPNTKHAKRVLSSSMLLQLPEMLTWINPPKTLIPFSSIIPNPSSPIPICSISPKPTKTSLKSLHLSPQHTLTSTDCGLKFREKILYLQELNINPSKVLQLNPHLRSATLDSIRSVEVCLFSMGIERSAIGRILDMHPQLLTSDPYIHLYPIFDFLLNDVVIPFHDIRKSIIRCPRILVCSVEDQLKPTFEFLKEFGFVGQNRITCQTTVLLVSSVELTLNPKIDYMLSLGFELDDVANMVLRSPGLLTFSIEKNFRPKVEYFLKEMNGDIRELKRFPQYFSFSLERKIKPRHRLLVEHGFTLSLSEMLKVSDGEFNARLIEMRLRLVDDKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13262" PGL_stop="12863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13262" e_stop="12863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="13262" e_stop="12863" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13262" stop="12863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTAATGAGTCTCCAACATAGACAAACTCGACTCTAACCATAGAAAAAGAGTTAATTACGTACTACATTTGCTTATCATCCACTAACCTCAATCGCATTTCAATCAATCTGGCATTGAATTCTCCATCACTAACCTTCAACATCTCCGATAAAGACAGCGTAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCTTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTTGGCCTAAAGTTTTTCTCAATACTAAATGTCAACAACCCAGGTGATCTCAAAACCATATTAGCCACATCATCGAGTTCAAATCCCAAACTCAACATGTAATCAATTTTA</gDNA_template>
            <first_frame> L  *  *  V  S  N  I  D  K  L  D  S  N  H  R  K  R  V  N  Y  V  L  H  L  L  I  I  H  *  P  Q  S  H  F  N  Q  S  G  I  E  F  S  I  T  N  L  Q  H  L  R  *  R  Q  R  K  P  M  L  H  Q  K  P  M  P  R  L  N  L  P  L  Q  T  K  R  K  V  L  R  K  P  L  Q  F  P  Y  I  P  I  H  L  L  Q  K  I  L  N  F  W  P  K  V  F  L  N  T  K  C  Q  Q  P  R  *  S  Q  N  H  I  S  H  I  I  E  F  K  S  Q  T  Q  H  V  I  N  F  </first_frame>
            <second_frame>  S  N  E  S  P  T  *  T  N  S  T  L  T  I  E  K  E  L  I  T  Y  Y  I  C  L  S  S  T  N  L  N  R  I  S  I  N  L  A  L  N  S  P  S  L  T  F  N  I  S  D  K  D  S  V  N  P  C  S  T  K  S  L  C  R  G  L  I  F  L  S  K  L  N  E  K  Y  *  G  N  L  F  N  S  L  I  S  P  F  I  S  F  K  K  Y  S  T  F  G  L  K  F  F  S  I  L  N  V  N  N  P  G  D  L  K  T  I  L  A  T  S  S  S  S  N  P  K  L  N  M  *  S  I  L </second_frame>
            <third_frame>   L  M  S  L  Q  H  R  Q  T  R  L  *  P  *  K  K  S  *  L  R  T  T  F  A  Y  H  P  L  T  S  I  A  F  Q  S  I  W  H  *  I  L  H  H  *  P  S  T  S  P  I  K  T  A  *  T  H  A  P  P  K  A  Y  A  E  A  *  S  S  S  P  N  *  T  K  S  T  E  E  T  S  S  I  P  L  Y  P  H  S  S  P  S  K  N  T  Q  L  L  A  *  S  F  S  Q  Y  *  M  S  T  T  Q  V  I  S  K  P  Y  *  P  H  H  R  V  Q  I  P  N  S  T  C  N  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0003C20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13240" stop="13031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSTLTIEKELITYYICLSSTNLNRISINLALNSPSLTFNISDKDSVNPCSTKSLCRGLIFLSKLNEKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15518" PGL_stop="16304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15518" e_stop="15852"/>
            <exon e_start="16127" e_stop="16304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.893"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="15518" e_stop="15852" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15853" i_stop="16126" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="16127" e_stop="16304" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15518" stop="15852"/>
              <exon start="16127" stop="16304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGATTCAATTCCAAAAGAACTCTTGAGAGCTATAGAAGATTCTCAAGTTGCACTTATCATTTTCTCAAAGAATTATGCTACATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGAGGAAGAAAATGGACAAACAGTCATACCGATCTTTTATAATGTGGATCCATCACATGTTCGATACCAAACTGAAAGCTTTGGAGCAGCATTTGCCAAACACGAATCAAAGTATAAGGATGATGTTGAGGGGATGCAGAAGGTGCAAAGATGGAGAACTGCCCTAACTGCTGCCGCAAATCTAAAAGGATATGATATCCGTAACGG : GATTGAATCAGAGAATATTCAGCAGATCGTAGATTGCATCTCTTCCAAATTTTGTACGAATGCTTATTCTTTATCTTTTTTGCAAGATATTGTGGGAATAAATGCTCACTTAGAGAAACTAAAATCGAAACTTCAAATAGAAATCAATGATGTTCGGATTTTAGGGATCTGGGGAATA</gDNA_template>
            <first_frame> G  D  S  I  P  K  E  L  L  R  A  I  E  D  S  Q  V  A  L  I  I  F  S  K  N  Y  A  T  S  R  W  C  L  N  E  L  V  K  I  M  E  C  K  E  E  E  N  G  Q  T  V  I  P  I  F  Y  N  V  D  P  S  H  V  R  Y  Q  T  E  S  F  G  A  A  F  A  K  H  E  S  K  Y  K  D  D  V  E  G  M  Q  K  V  Q  R  W  R  T  A  L  T  A  A  A  N  L  K  G  Y  D  I  R  N  G :   I  E  S  E  N  I  Q  Q  I  V  D  C  I  S  S  K  F  C  T  N  A  Y  S  L  S  F  L  Q  D  I  V  G  I  N  A  H  L  E  K  L  K  S  K  L  Q  I  E  I  N  D  V  R  I  L  G  I  W  G  I </first_frame>
            <second_frame>  E  I  Q  F  Q  K  N  S  *  E  L  *  K  I  L  K  L  H  L  S  F  S  Q  R  I  M  L  H  L  G  G  A  *  M  N  *  *  R  S  W  N  A  K  R  K  K  M  D  K  Q  S  Y  R  S  F  I  M  W  I  H  H  M  F  D  T  K  L  K  A  L  E  Q  H  L  P  N  T  N  Q  S  I  R  M  M  L  R  G  C  R  R  C  K  D  G  E  L  P  *  L  L  P  Q  I  *  K  D  M  I  S  V  T   : G  L  N  Q  R  I  F  S  R  S  *  I  A  S  L  P  N  F  V  R  M  L  I  L  Y  L  F  C  K  I  L  W  E  *  M  L  T  *  R  N  *  N  R  N  F  K  *  K  S  M  M  F  G  F  *  G  S  G  E   </second_frame>
            <third_frame>   R  F  N  S  K  R  T  L  E  S  Y  R  R  F  S  S  C  T  Y  H  F  L  K  E  L  C  Y  I  *  V  V  L  E  *  T  S  E  D  H  G  M  Q  R  G  R  K  W  T  N  S  H  T  D  L  L  *  C  G  S  I  T  C  S  I  P  N  *  K  L  W  S  S  I  C  Q  T  R  I  K  V  *  G  *  C  *  G  D  A  E  G  A  K  M  E  N  C  P  N  C  C  R  K  S  K  R  I  *  Y  P  *  R  :  D  *  I  R  E  Y  S  A  D  R  R  L  H  L  F  Q  I  L  Y  E  C  L  F  F  I  F  F  A  R  Y  C  G  N  K  C  S  L  R  E  T  K  I  E  T  S  N  R  N  Q  *  C  S  D  F  R  D  L  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0003C20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15518" stop="15852"/>
                    <exon start="16127" stop="16304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDSIPKELLRAIEDSQVALIIFSKNYATSRWCLNELVKIMECKEEENGQTVIPIFYNVDPSHVRYQTESFGAAFAKHESKYKDDVEGMQKVQRWRTALTAAANLKGYDIRNGIESENIQQIVDCISSKFCTNAYSLSFLQDIVGINAHLEKLKSKLQIEINDVRILGIWGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="16690" PGL_stop="17288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16690" e_stop="17288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="16690" e_stop="17288" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16690" stop="17288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468081" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATGAAGCTATGCAATTATTCAATATGCATGCTTTTAAAAAAGAAGTTCCAAATGAGGATTTTAAGGAGTTGGCGTTAGAGATAGTAAATCACGCTAAAGGCCTCCCTTTAGCCCTCAAGGTGTGGGGCTGTTTATTGCATAAAAAAAATCTCTCTTTATGGAAAATAACAGTAGAGCAAATAAAGAAAGACTCTAATTCAGAAATTGTTGAACAACTCAAAATAAGTTATGATGGGTTGGAGTCCGAAGAGCAGGAAATATTTTTAGATATAGCATGTTTCTTCCGCGGAGAGAAAAGAAAAGAGGTCATGCAAATTCTTAAGAGTTGTGACTTTGGAGCTGAATACGGATTGGATGTTCTGATTAATAAATCTCTTGTGTTCATATCTGAAAATGACAGGATTGAAATGCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCAGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAGAAGTGATGATAGACTATACGGTAAGTAAGCTTAACAATGCAATGATATTTAATTTCTAATTTTTATATTCCAAGGAACTTATAGGCTAATCA</gDNA_template>
            <first_frame> I  M  K  L  C  N  Y  S  I  C  M  L  L  K  K  K  F  Q  M  R  I  L  R  S  W  R  *  R  *  *  I  T  L  K  A  S  L  *  P  S  R  C  G  A  V  Y  C  I  K  K  I  S  L  Y  G  K  *  Q  *  S  K  *  R  K  T  L  I  Q  K  L  L  N  N  S  K  *  V  M  M  G  W  S  P  K  S  R  K  Y  F  *  I  *  H  V  S  S  A  E  R  K  E  K  R  S  C  K  F  L  R  V  V  T  L  E  L  N  T  D  W  M  F  *  L  I  N  L  L  C  S  Y  L  K  M  T  G  L  K  C  M  I  *  L  E  I  W  V  D  M  W  *  K  C  K  S  F  R  K  N  V  A  E  Y  G  M  L  K  I  S  K  K  *  *  *  T  I  R  *  V  S  L  T  M  Q  *  Y  L  I  S  N  F  Y  I  P  R  N  L  *  A  N   </first_frame>
            <second_frame>  S  *  S  Y  A  I  I  Q  Y  A  C  F  *  K  R  S  S  K  *  G  F  *  G  V  G  V  R  D  S  K  S  R  *  R  P  P  F  S  P  Q  G  V  G  L  F  I  A  *  K  K  S  L  F  M  E  N  N  S  R  A  N  K  E  R  L  *  F  R  N  C  *  T  T  Q  N  K  L  *  W  V  G  V  R  R  A  G  N  I  F  R  Y  S  M  F  L  P  R  R  E  K  K  R  G  H  A  N  S  *  E  L  *  L  W  S  *  I  R  I  G  C  S  D  *  *  I  S  C  V  H  I  *  K  *  Q  D  *  N  A  *  F  D  *  R  Y  G  *  I  C  G  E  N  A  K  A  S  E  K  T  *  Q  N  M  G  C  *  R  F  Q  R  S  D  D  R  L  Y  G  K  *  A  *  Q  C  N  D  I  *  F  L  I  F  I  F  Q  G  T  Y  R  L  I  </second_frame>
            <third_frame>   H  E  A  M  Q  L  F  N  M  H  A  F  K  K  E  V  P  N  E  D  F  K  E  L  A  L  E  I  V  N  H  A  K  G  L  P  L  A  L  K  V  W  G  C  L  L  H  K  K  N  L  S  L  W  K  I  T  V  E  Q  I  K  K  D  S  N  S  E  I  V  E  Q  L  K  I  S  Y  D  G  L  E  S  E  E  Q  E  I  F  L  D  I  A  C  F  F  R  G  E  K  R  K  E  V  M  Q  I  L  K  S  C  D  F  G  A  E  Y  G  L  D  V  L  I  N  K  S  L  V  F  I  S  E  N  D  R  I  E  M  H  D  L  I  R  D  M  G  R  Y  V  V  K  M  Q  K  L  Q  K  K  R  S  R  I  W  D  V  E  D  F  K  E  V  M  I  D  Y  T  V  S  K  L  N  N  A  M  I  F  N  F  *  F  L  Y  S  K  E  L  I  G  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0003C20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16692" stop="17255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEAMQLFNMHAFKKEVPNEDFKELALEIVNHAKGLPLALKVWGCLLHKKNLSLWKITVEQIKKDSNSEIVEQLKISYDGLESEEQEIFLDIACFFRGEKRKEVMQILKSCDFGAEYGLDVLINKSLVFISENDRIEMHDLIRDMGRYVVKMQKLQKKRSRIWDVEDFKEVMIDYTVSKLNNAMIFNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 30544 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2181 bytes was the average size of a spliced alignment
$ 10360 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2072 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:42:57
-->
