<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:24:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341446" ref_strand="+" ref_description="SGN-E341446 [cTOE-23-I7]">
      <seq>tcagtcttgttgtgttcctgcattaggtgttgagaattcccttgctgcagcaaaatcatcgcgcacttttactccaagcgctccttctctgaactcctgtcttttcaactggaataccagcttgaccaatgctggatatgcaacacgtccgatcgataacatttttcaatttcacaaggcaatcagaaaggatttggaatttctggatgttgaatctggaaaactgactgattgtgatgagactttcctcaggaagttttgtggtcgttttcgtctcctacggggtttgtataaagctcacagtaatgcagaggatgatatagtatttccagctttggaatcaaaagagacgcttcataatgttagccattcttacaccttggaccacaaacaggaagaaaagctattcgaggatatatcatctgcacttgatgagctttctcagctccgtgaaaacttgaatggtgggagttcagttaaaggtccgtgtagaaactctggtgcttgtgacttacatgaatattcaagaaaatacaatgagctggcaactaaagttcaagccatgtgcaaatcgataaaagtaaccctggatcaacatgttatacgggaggaagttgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8484" stop="7263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8184" g_stop="7563" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E341446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8184" e_stop="7563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGTGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</genome_strand>
        <mrna_strand>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGAGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740629" ref_strand="+" ref_description="SGN-E740629 [LC22BB04]">
      <seq>caattgttaacaaacaaacgcaaggcttgtgaagagagtagaacacacaataattcagattctgttgttagaggcttaattggtcaggcagagaatgttccttgtccttgtgaatcttctagcagggaatttcttgtctcaaatttgaatcttaaagaatccactctgaatcgcccggttgatgagatactgcattggcacaaggctattagaaaggagttgaatgacataacagaagcagctagggaaataaagttgcgtggagatttttctgatttatctgccttcaaccagaggcttcagtttattgctgaagtttgtatctttcatagtattgccgaggacaaagttatatttcctgcagtagatgcagaaatatcatttgcccaggagcatgcggaagaagaaaacgagtttgataaatttagatgcttgatagaaagcgttcagagtgctggatccaactcaacttctgtagaattttattcagaactgtgctcacaagctgatcatataatggagacagtggaaagacacttctgtaatgaggaggctcaggttcttccactcgcacgaaaacattttagcgccaaaaggcagcgggaactcctttaccagagcttgtgtgttatgccacttagactcatagaatgcgtcttaccatggttggtaggttcattaagtgaggaggaagcaaggtcttttcttcagaacatgcatctggcagcaccagcatcagacactgctttggtcacacttttctctggttgggcatgcaaaggtcgtccagatgacatttgtttatctttcagtgtaaccggttgctgtcctgctaaaatttagctgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9938" stop="8074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9639" g_stop="9308" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9307" i_stop="9181" i_length="127">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9180" g_stop="8955" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="558" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8954" i_stop="8779" i_length="176">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8778" g_stop="8610" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="727" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8609" i_stop="8498" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.240" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8497" g_stop="8374" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="850" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E740629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9639" e_stop="9308"/>
          <exon e_start="9180" e_stop="8955"/>
          <exon e_start="8778" e_stop="8610"/>
          <exon e_start="8497" e_stop="8374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAGGTATGCAGCCTCACTATTATGCATATCTATTTGAAGTTTTGGCTTAAATAATTTTGACGGACTAATATATAACTGCTATGGTGCTTGAATCTGGATCATTCAAACTATTTTCATACTTTGACTGCAGTATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAGGTGAGTAATATCAGAATCAGAAATATTCTGCAAGTTCAATGTTTCGATCTTTAGATACAACAACATACCCGATGAAATTCCACAAGTATATACCCCCGTGTAAAAAAATAGTTATATCTCGGAAGTGATGAAAGTAGGTAATTGATCTTGATTATTTAGATTCTATGTGATCCCAGGTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAGGTAAAGTCTAATTTCTACTGCTTGATACTTTCATTTAATTAAAACTTGGCTTCTGTGTTGACAATGATAGAAAGTATGCCTGTTCACCCCGTCTGTTTTGTTACTAATGCAGCACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTCAAGTGTAACCGGTTGCTGTCCTGCTAAAATTTTAGCTGGGAA</genome_strand>
        <mrna_strand>CAATTGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAG...............................................................................................................................TATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAG................................................................................................................................................................................GTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAG................................................................................................................CACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTTCAGTGTAACCGGTTGCTGTCCTGCTAAAA-TTTAGCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259490" ref_strand="+" ref_description="SGN-E259490 [cLEG-42-A18]">
      <seq>accagctttaaaaatctttaaacaacaacctactattatattataaaacaaaaaaaactacacaaaatttcaactttcagtgagtttacttcaatggcgactcagtataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttaagcaaaacccacctcctaaattcaacgatcctgagtatgattctttttccgattcccctttatgggattttccttcttcaccattgttacctcttgattctccttcagataatcaattttctatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatcttaattcagctattcataaggttctagagcaagtggaattagaggataccccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacgatctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatgaccactgaaggatgcattagtatgcttgctgaagtgaagccttgcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26693" stop="30071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26991" g_stop="27347" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28471" g_stop="28615" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="502" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29698" g_stop="29771" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="576" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E259490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26991" e_stop="27347"/>
          <exon e_start="28471" e_stop="28615"/>
          <exon e_start="29698" e_stop="29771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGAC</genome_strand>
        <mrna_strand>ACCAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368225" ref_strand="+" ref_description="SGN-E368225 [TUS-26-I10]">
      <seq>acagctttaaaaatctttaaacaacaacctactattatattataaaacaaaaaaaactacacaaaatttcaactttcagtgagtttacttcaatggcgactcagtataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttaagcaaaacccacctcctaaattcaacgatcctgagtatgattctttttccgattcccctttatgggattttccttcttcaccattgttacctcttgattttccttcagataatcaattttctatacaagtccctgaatcttgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26692" stop="27598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26992" g_stop="27295" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E368225" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26992" e_stop="27295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTG</genome_strand>
        <mrna_strand>ACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTTTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471911" ref_strand="+" ref_description="SGN-E471911 [cSTB-26-I8]">
      <seq>ttcaatggcgactctgtataatctttcgttaatcatcaagaatccatcaaatgaagctgaatttctacttgttaaacaaaacccacctgctaaattcaacgatcctgaatatgattctttttccgattcccctttatgggatttgccttcttcaccattgttacctcttgattctccttcagataatcaattttccatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatgttaattcagcgattcgtaaggttctagagcaagtggaattagatgttatcccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacggtctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26780" stop="30022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27080" g_stop="27347" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28471" g_stop="28615" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="413" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29698" g_stop="29722" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="438" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E471911" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27080" e_stop="27347"/>
          <exon e_start="28471" e_stop="28615"/>
          <exon e_start="29698" e_stop="29722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATGAC</genome_strand>
        <mrna_strand>TTCAATGGCGACTCTGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGCTGAATTTCTACTTGTTAAACAAAACCCACCTGCTAAATTCAACGATCCTGAATATGATTCTTTTTCCGATTCCCCTTTATGGGATTTGCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCCATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATGTTAATTCAGCGATTCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGATGTTATCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGGTCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414234" ref_strand="+" ref_description="SGN-E414234 [STM-19-M21]">
      <seq>tataatctttcgttaatcatcaagaaatccatcaaatgaagatgaatttctacttgttgaacaaaacccacctgctaaattcaacgatcctgaatatgattctttttccgattcccctttatgggatttgccttcttcaccattgttacctcttgattctccttcagataatcaattttccatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatgttaattcagcgattcgtaaggttctagagcaagtggaattagatgatatcccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacggtctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatgaccactgaaggatgcattagtatgcttgctgaagtgaagccttgcagtgaccgtgtangatcaatggtggttgttggtcttctgaatgattcaacaaaatctgggacatggaaaaatcctcccaccttgaaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26796" stop="30156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27096" g_stop="27347" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28471" g_stop="28615" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="398" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29698" g_stop="29856" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="557" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E414234" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27096" e_stop="27347"/>
          <exon e_start="28471" e_stop="28615"/>
          <exon e_start="29698" e_stop="29856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCTTTCGTTAATCATCAAG-AATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGACCGTGTAGGATCAATGGTGGTTGTTGGTCTTTTGAATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTC</genome_strand>
        <mrna_strand>TATAATCTTTCGTTAATCATCAAGAAATCCATCAAATGAAGATGAATTTCTACTTGTTGAACAAAACCCACCTGCTAAATTCAACGATCCTGAATATGATTCTTTTTCCGATTCCCCTTTATGGGATTTGCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCCATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATGTTAATTCAGCGATTCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGATGATATCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGGTCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAGTGACCGTGTANGATCAATGGTGGTTGTTGGTCTTCTGAATGATTCAACAAAATCTGGGACATGGAAAAATCCTCCCACCTTGAAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414158" ref_strand="+" ref_description="SGN-E414158 [STM-19-E21]">
      <seq>tataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttgaacaaaacccacctgctaaattcaacgatcctgaatatgattctttttccgattcccctttatgggatttgccttcttcaccattgttacctcttgattctccttcagataatcaattttccatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatgttaattcagcgattcgtaaggttctagagcaagtggaattagatgatatcccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacggtctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatgaccactgaangatgcattagtatgcttgctgaagtgaagccttgcagtgaccgtgtangatcaatggtggttgttggtcttctgaatgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26796" stop="30115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27096" g_stop="27347" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28471" g_stop="28615" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="397" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29698" g_stop="29815" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="515" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E414158" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27096" e_stop="27347"/>
          <exon e_start="28471" e_stop="28615"/>
          <exon e_start="29698" e_stop="29815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGACCGTGTAGGATCAATGGTGGTTGTTGGTCTTTTGAATGATTCAAC</genome_strand>
        <mrna_strand>TATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTGAACAAAACCCACCTGCTAAATTCAACGATCCTGAATATGATTCTTTTTCCGATTCCCCTTTATGGGATTTGCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCCATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATGTTAATTCAGCGATTCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGATGATATCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGGTCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATGACCACTGAANGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAGTGACCGTGTANGATCAATGGTGGTTGTTGGTCTTCTGAATGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473509" ref_strand="+" ref_description="SGN-E473509 [cSTB-32-J17]">
      <seq>tataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttgaacaaaacccacctgctaaattcaacgatcctgaatatgattctttttccgattcccctttatgggatttgccttcttcaccattgttacctcttgattctccttcagataatcaattttccatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatgttaattcagcgattcgtaaggttctagagcaagtggaattagatgatatcccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacggtctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26796" stop="30020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27096" g_stop="27347" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28471" g_stop="28615" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="397" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29698" g_stop="29720" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="420" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E473509" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27096" e_stop="27347"/>
          <exon e_start="28471" e_stop="28615"/>
          <exon e_start="29698" e_stop="29720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATG</genome_strand>
        <mrna_strand>TATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTGAACAAAACCCACCTGCTAAATTCAACGATCCTGAATATGATTCTTTTTCCGATTCCCCTTTATGGGATTTGCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCCATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATGTTAATTCAGCGATTCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGATGATATCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGGTCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233222" ref_strand="+" ref_description="SGN-E233222 [cLED-6-E5]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaaccttttcgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatgttagtacaaactcgttgatcgtaggggatcattgtgtgggccatagaagtgctctcttagatagcgcgtctggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29506" stop="34272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29806" g_stop="29858" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30412" g_stop="30591" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31539" g_stop="31614" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32118" g_stop="32195" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32947" g_stop="33032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33560" g_stop="33633" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="547" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33634" i_stop="33935" i_length="302">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33936" g_stop="33972" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="584" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E233222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29806" e_stop="29858"/>
          <exon e_start="30412" e_stop="30591"/>
          <exon e_start="31539" e_stop="31614"/>
          <exon e_start="32118" e_stop="32195"/>
          <exon e_start="32947" e_stop="33032"/>
          <exon e_start="33560" e_stop="33633"/>
          <exon e_start="33936" e_stop="33972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGGGTAAGATATGTTTGATCAAGAAACTTCATATCCTTTAACAAATGAATATTTTCACTTGATAAATAATTTGTGGACATGATTACCAATTTTAAATGTAGCTTCCCCCGAAATAGTAATAATAAAAAAATGCAGTTTCCTAGTCCTTTTGAACAATTCTTTTAGCTTTTCTATGATGATACGGAAAACAATCTGTTCAACAAGTCTGTGATTGTGTTGGCCTACTTTGCATTTGTTTGTGATAGCTTCTCAATTTCTTCTCCTTTCTTAAAAATTGCTAATTTGATGTATCCCGTTGGTTTCAGCCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGA</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG..............................................................................................................................................................................................................................................................................................................CCATAGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243894" ref_strand="+" ref_description="SGN-E243894 [cLED-35-B11]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaacctttttgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29506" stop="33893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29806" g_stop="29858" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30412" g_stop="30591" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31539" g_stop="31614" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32118" g_stop="32195" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32947" g_stop="33032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33560" g_stop="33593" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="507" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E243894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29806" e_stop="29858"/>
          <exon e_start="30412" e_stop="30591"/>
          <exon e_start="31539" e_stop="31614"/>
          <exon e_start="32118" e_stop="32195"/>
          <exon e_start="32947" e_stop="33032"/>
          <exon e_start="33560" e_stop="33593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATG</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTTGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236521" ref_strand="+" ref_description="SGN-E236521 [cLED-13-I3]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaaccttttcgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="29506" stop="33880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29806" g_stop="29858" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30412" g_stop="30591" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31539" g_stop="31614" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32118" g_stop="32195" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32947" g_stop="33032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33560" g_stop="33580" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="494" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E236521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29806" e_stop="29858"/>
          <exon e_start="30412" e_stop="30591"/>
          <exon e_start="31539" e_stop="31614"/>
          <exon e_start="32118" e_stop="32195"/>
          <exon e_start="32947" e_stop="33032"/>
          <exon e_start="33560" e_stop="33580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATG</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323478" ref_strand="+" ref_description="SGN-E323478 [cTOC-7-I1]">
      <seq>aggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatgttagtacaaactcgttgatcgtaggggatcattgtgtgggccaaggaagtgctctcttagatagcgcgtctggtggaaatatgcaggattactttcagacaacatacaaattcattgagctctctcctcatgcgttgattcccatgcacggaagaactaatatgtggccaaaacacatgctctgtgggtatctcaaaaaccggagaaacagagaatcaaccatcttaatggcaatagagaatggtgctaaaacattgtttgacataattgcttacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="30264" stop="35827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30564" g_stop="30591" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31539" g_stop="31614" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="104" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32118" g_stop="32195" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="182" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32947" g_stop="33032" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="268" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33560" g_stop="33633" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="342" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33634" i_stop="33935" i_length="302">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33936" g_stop="33981" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="388" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33982" i_stop="34973" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34974" g_stop="35083" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="498" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="35084" i_stop="35445" i_length="362">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35446" g_stop="35527" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="580" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E323478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30564" e_stop="30591"/>
          <exon e_start="31539" e_stop="31614"/>
          <exon e_start="32118" e_stop="32195"/>
          <exon e_start="32947" e_stop="33032"/>
          <exon e_start="33560" e_stop="33633"/>
          <exon e_start="33936" e_stop="33981"/>
          <exon e_start="34974" e_stop="35083"/>
          <exon e_start="35446" e_stop="35527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGGGTAAGATATGTTTGATCAAGAAACTTCATATCCTTTAACAAATGAATATTTTCACTTGATAAATAATTTGTGGACATGATTACCAATTTTAAATGTAGCTTCCCCCGAAATAGTAATAATAAAAAAATGCAGTTTCCTAGTCCTTTTGAACAATTCTTTTAGCTTTTCTATGATGATACGGAAAACAATCTGTTCAACAAGTCTGTGATTGTGTTGGCCTACTTTGCATTTGTTTGTGATAGCTTCTCAATTTCTTCTCCTTTCTTAAAAATTGCTAATTTGATGTATCCCGTTGGTTTCAGCCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAGGTAAGTAACAATAGCATCTGTATGTTTCTTTTTGTCACTCTGTCATACTTGGAATGCTAATTAGAAGATGATGATTGGTTGTTGGTGTCTTAACTTTTGAAACTTGATTTAAATAAAAGGATCCGACTCTTCAACCAGAAAAAACCCACTATACTTTTCTTTTCCCATATAAAACTCGTTTACTTGTTTTCTTGTCAATGAGCAAGCCTTGCTCATGCATTCTATTAACTTTCTTGAATAGCCTTTTCCTTTCCTCTCTTTAGCCTTTGAAACTTAAATGTGAACTAGCACCTCTACTGAAAGCAGTGAGAATTAAGACTATACCACCACATTTTTCATATTCAAATTTTATATCCAATTCTAGATTGTTGATTCATATCAAAAAGATCAGCTATGAAAGTTTTTAACAGTTTTAGTCAATTGAATGGCAATCTAAATCTAGTATTGTGTCTGTTAAGGGTACTTAGATGGTGAAACTATTATGTTTTTAATATTGTCTTCCACAGGTTCTTTAATCTACATTCAGGTTCCCCTATTAAAATTTGAAAACATTCACTCAAAAATCACTAAAAACTCGCTAAAAAAGTGAATGAATTTCTTTCTGCTAGGGACAGGGGTTCAGCAAGAGTGTTTTAGCTGAATTCTGTAAATCTAACTTTGATAGTTTTATTTACCTTTTACAATAATGCTCATTTTATAATACCTTGTGACAATACTGAATAAGATATGGATTAAAGGAAGTAGGGGGTTGGGGAATCAACAAAAGTGCATTTGTGAATTCTGTAACTTAAATTGCTTTCTAGTTTTATTTTTATTTTCCGATAATGATTTTTGCTGTTTTCAATAACCCTAGTGAATATACAGAAAAAGATTAAGATTAGAGCAACTTGTAGGTGTTCATATCTGTTTCTATTATCATGTTCAACTATGACTTGGTCTTTCTCTTCTTTTTGAAATTCTCAGTATCGGAACTTCAATTTTTTTTTAAACAGGATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAAGTATGAACTTCAGACCTCTTATGACATATTCCATATATGCTTTCACTCAGAGTGCCTTTTCTGTCTATCAGCTATCGGCAAAATCATTGCCGAAGTATATGGTTAACAATTGTGCAGAAACCTTGCTTGTTTCCTTGTTGCTTTCTCCCACCATGTAAATCTTGTAGTCTTGTTTTATTGAACATTATGCTAATATATGTCATTAGCTGTGAAATTTGTTCAGTTAGTTTTATGTTCAATGTTTATTGATGTTGTCTAAGATAGATGTCAATCAAATTATCATTCTCAAAAAATTTATAAAACAGATACACTGATAGATTAAATTGACGCACATCTAATTTATTATTATCTGGGATTGTCAGAAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACT</genome_strand>
        <mrna_strand>AGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG..............................................................................................................................................................................................................................................................................................................CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA..........................................................................................................................................................................................................................................................................................................................................................................AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAATTGCTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554348" ref_strand="-" ref_description="SGN-E554348 [cTSC-4-A14]">
      <seq>catacaaattcattgagctctctcctcatgcgttgattcccatgcacgaaagaactaatatgtggccaaaacacatgctctgtgggtatctcaaaaaccggagaaacagagaatcaaccatcttaatggcaatagagaatggtgctaaaacattgtttgacatagttgcttacacttatgccgatgttgaccgaagcctctggttttatgcctcatcaaatgtgagactccacgtggatcatctagcagtccagaataaattaccaagtgacttctctttagaaaatttcaatcgcagttgtgctgagtttgctggcatggtgcataaaatataaggaaactttcagaaagcagccccctaagacctgcagttacctttcttcctttaggatttttcaatccaaagttttcaggcaagttatgggctgcgtttcctttttaggtggatattagaatactcaagtagtgcattctcaataaagcatcacacagtcagagcggctttactagtcggtactggagctctggccattggttgcttggctgtatcattctccagaaaaaatgaactcctctctaggtgatgcaaacaattcttgctccggaaggcagatttcgtcaaggaagttaatttaccgtctggctccaggtcatgttctctctcattgtaccagaagctctaggagaagcatgaagatgtttacattagtagtaaaatactcattgatagtgttgtgcgcataactcgccatcattgttctgcatttctgatatttttttgtgattaaagaaaccgattggatcaattagaagtgtaagacaagattattgttaatggatcacacaacttctgagacagttatcatagaaatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="34690" stop="37255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34990" g_stop="35083" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35084" i_stop="35445" i_length="362">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35446" g_stop="35620" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="269" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36168" g_stop="36287" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="389" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36288" i_stop="36466" i_length="179">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36467" g_stop="36955" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="878" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E554348" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554348" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34990" e_stop="35083"/>
          <exon e_start="35446" e_stop="35620"/>
          <exon e_start="36168" e_stop="36287"/>
          <exon e_start="36467" e_stop="36955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAAGTATGAACTTCAGACCTCTTATGACATATTCCATATATGCTTTCACTCAGAGTGCCTTTTCTGTCTATCAGCTATCGGCAAAATCATTGCCGAAGTATATGGTTAACAATTGTGCAGAAACCTTGCTTGTTTCCTTGTTGCTTTCTCCCACCATGTAAATCTTGTAGTCTTGTTTTATTGAACATTATGCTAATATATGTCATTAGCTGTGAAATTTGTTCAGTTAGTTTTATGTTCAATGTTTATTGATGTTGTCTAAGATAGATGTCAATCAAATTATCATTCTCAAAAAATTTATAAAACAGATACACTGATAGATTAAATTGACGCACATCTAATTTATTATTATCTGGGATTGTCAGAAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGTGTATGTATTCTTTGTTCCCTTGTGATTTAACATCAATTCATTATATGTCAGAGCTTATATTTATGATCACTCCTGTTTTGGATGTCAAATTTAAGGTTCAATAATAAGCTTACTAAAACTGGAGTCCTCTTTGGAAATCCGTGACGCTTGGCTGTCTTAGCAGCTTTGAAAGAGCCTCTCTTTACAGTCAAAACTGTCTGTTTCATAGAATTATGGTCCATGGAATGTAGTAGTTTAAACTTTTTTGTACCAGTTTTCACATTAAATGATATGCATGCTTATGTTTCCTGAATGACTTAACCTTGAAGTTGATATAATTGCTTTTAGTCATGTGGAAACTTGTGGTGATCCATAAAATTAGATTCAGCCATTTGAGCCCCGTAGATAATAATTGACGAGAGATTCCATGCTTGCCAACACTTTTATGTCCTGATTTGCTCCATGTCTGGCTTGAGTGTAGACATAAGTGCAATAGTTGGGCCATATATTTATATGCCTTTAGTAACTTAATTGATTAGGATACCAAACTTTTCTGTGTCATGTGCAGGACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAGGTTGGATAACTACTTATTTTCCTTGTAATAGCTAGTTGCTACTGCCTACGTACATTTCATCAGATACAGTCTCGAAAGTAGATCACTATCACAATTATGGACGACTACCTATTTGTTTGTGCACTTGGTTTTTATATTTCCAAAGGGCCTTAGAAGTCATTTCCATCATCGATTTGCAGGATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</genome_strand>
        <mrna_strand>CATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGAAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA..........................................................................................................................................................................................................................................................................................................................................................................AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAG...................................................................................................................................................................................GATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414235" ref_strand="-" ref_description="SGN-E414235 [STM-19-M21]">
      <seq>agcagtccagaataaattaccaagtgacttctctttagaaaatttcaatcgcagttgtgctgagtttgctggcatggtgcataaaatataagggaactttcagaaaggatttttcaatccaaaattttcaggcaagttgtgggctgcgtttcctttttaggtgggtattggaatactcaagtagtgcattctcaataaagcatcacacggtcagagtggctttactagtcggtactggagctgtggccattggttgcttggctgcatcattctccagaaaaaaacaaacttctctctagatgatgcaaacaattcttgctccggaaggcagaattcgtcaaggaagttaattaccggctggttccaggtcatcttctctctcattgtaccagaagctctaggagaagcgtgaagatgtttgcattgctgtttttagtagtaaaatactcattgatagtgttgtgcgcataactcgccataattgttctgcatttctgatatttcttcatgattaaagaaagctattggatcaattagaagtgtaagacaagattagtgttaattgatcacagagaagttgttattgtgttatttaaaaaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="35296" stop="37256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35596" g_stop="35620" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36168" g_stop="36249" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="107" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36250" i_stop="36466" i_length="217">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36467" g_stop="36921" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="571" r_length="464" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E414235" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414235" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35596" e_stop="35620"/>
          <exon e_start="36168" e_stop="36249"/>
          <exon e_start="36467" e_stop="36921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCCAGAATAAATTACCAAGTGTATGTATTCTTTGTTCCCTTGTGATTTAACATCAATTCATTATATGTCAGAGCTTATATTTATGATCACTCCTGTTTTGGATGTCAAATTTAAGGTTCAATAATAAGCTTACTAAAACTGGAGTCCTCTTTGGAAATCCGTGACGCTTGGCTGTCTTAGCAGCTTTGAAAGAGCCTCTCTTTACAGTCAAAACTGTCTGTTTCATAGAATTATGGTCCATGGAATGTAGTAGTTTAAACTTTTTTGTACCAGTTTTCACATTAAATGATATGCATGCTTATGTTTCCTGAATGACTTAACCTTGAAGTTGATATAATTGCTTTTAGTCATGTGGAAACTTGTGGTGATCCATAAAATTAGATTCAGCCATTTGAGCCCCGTAGATAATAATTGACGAGAGATTCCATGCTTGCCAACACTTTTATGTCCTGATTTGCTCCATGTCTGGCTTGAGTGTAGACATAAGTGCAATAGTTGGGCCATATATTTATATGCCTTTAGTAACTTAATTGATTAGGATACCAAACTTTTCTGTGTCATGTGCAGGACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAGGTTGGATAACTACTTATTTTCCTTGTAATAGCTAGTTGCTACTGCCTACGTACATTTCATCAGATACAGTCTCGAAAGTAGATCACTATCACAATTATGGACGACTACCTATTTGTTTGTGCACTTGGTTTTTATATTTCCAAAGGGCCTTAGAAGTCATTTCCATCATCGATTTGCAGGATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAG-AAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTT--A---C----ATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACA</genome_strand>
        <mrna_strand>AGCAGTCCAGAATAAATTACCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGGAACTTTCAGAAAG.........................................................................................................................................................................................................................GATTTTTCAATCCAAAATTTTCAGGCAAGTTGTGGGCTGCGTTTCCTTTTTAGGTGGGTATTGGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACGGTCAGAGTGGCTTTACTAGTCGGTACTGGAGCTGTGGCCATTGGTTGCTTGGCTGCATCATTCTCCAGAAAAAAACAAACTTCTCTCTAGATGATGCAAACAATTCTTGCTCCGGAAGGCAGAATTCGTCAAGGAAGTTAA-TTACCGGCTGGTTCCAGGTCATCTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCGTGAAGATGTTTGCATTGCTGTTTTTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATAATTGTTCTGCATTTCTGATATTTCTTCATGATTAAAGAAAGCTATTGGATCAATTAGAAGTGTAAGACAAGATTAGTGTTAATTGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316059" ref_strand="+" ref_description="SGN-E316059 [cTOA-23-O6]">
      <seq>agagtctatgcagaaggaggtaaagaagccgtttccgatagaccctttgactcagagaaaaaaaaacatcaaaatagatactatagacaacatgacagaaaaaaaactttcttcaaggctcataattgcagctttttactttaactgcaataaaaacaaaaaccacaccttgcctcttttcatttcacattttcttcttgccccatactaacacttcccatgctcctttgcatgtattcctcatttttacttactttatacatatcataaattgagaccttttactatcactttatacatatattttattttttttagagaaatgagtttccatcttggtaccaccatagttcttacattatttgtctcattttctgcattactattaggcttgttcatcaattatcaattcaacaagattgttgtctatgaagatttctacttgcctcaccaatcaccaatttacaatctctccatctctacacatcttgtttgtaactcatcttcgtctgattctagttctaataggaccatggaggagttgaatgatgtttggcactcgatgaacgatgaagaacttatgtggagagcttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36951" stop="38148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37251" g_stop="37848" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E316059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37251" e_stop="37848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTATGCAGAAGGAGGTAAAGAAGCCGTTTCCGATAGACCCTTTGACTCAGAGAAAAAAAAACATCAAAATAGATACTATAGACAACATGACAGAAAAAAAACTTTCTTCAAGGCTCATAATTGCAGCTTTTTACTTTAACTGCAATAAAAACAAAAACCACACCTTGCCTCTTTTCATTTCACATTTTCTTCTTGCCCCATACTAACACTTCCCATGCTCCTTTGCATGTATTCCTCATTTTTACTTACTTTATACATATCATAAATTGAGACCTTTTACTATCACTTTATACATATATTTTATTTTTTTTAGAGAAATGAGTTTCCATCTTGGTACCACCATAGTTCTTACATTATTTGTCTCATTTTCTGCATTACTATTAGGCTTGTTCATCAATTATCAATTCAACAAGATTGTTGTCTATGAAGATTTCTACTTGCCTCACCAATCACCAATTTACAATCTCTCCATCTCTACACATCTTGTTTGTAACTCATCTTCGTCTGATTCTAGTTCTAATAGGACCATGGAGGAGTTGAATGATGTTTGGCACTCGATGAACGATGAAGAACTTATGTGGAGAGCTTCAATG</genome_strand>
        <mrna_strand>AGAGTCTATGCAGAAGGAGGTAAAGAAGCCGTTTCCGATAGACCCTTTGACTCAGAGAAAAAAAAACATCAAAATAGATACTATAGACAACATGACAGAAAAAAAACTTTCTTCAAGGCTCATAATTGCAGCTTTTTACTTTAACTGCAATAAAAACAAAAACCACACCTTGCCTCTTTTCATTTCACATTTTCTTCTTGCCCCATACTAACACTTCCCATGCTCCTTTGCATGTATTCCTCATTTTTACTTACTTTATACATATCATAAATTGAGACCTTTTACTATCACTTTATACATATATTTTATTTTTTTTAGAGAAATGAGTTTCCATCTTGGTACCACCATAGTTCTTACATTATTTGTCTCATTTTCTGCATTACTATTAGGCTTGTTCATCAATTATCAATTCAACAAGATTGTTGTCTATGAAGATTTCTACTTGCCTCACCAATCACCAATTTACAATCTCTCCATCTCTACACATCTTGTTTGTAACTCATCTTCGTCTGATTCTAGTTCTAATAGGACCATGGAGGAGTTGAATGATGTTTGGCACTCGATGAACGATGAAGAACTTATGTGGAGAGCTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204439" ref_strand="+" ref_description="SGN-E204439 [cLEC-13-L16]">
      <seq>gattaaatcattcaacactccaataaatattataaatctcttttcttcttttttcttatttgcttgtggtataacatgtggtattattttcactttttatttcaaaaactttagtgttaacttacaagtcatcaatggtcaaattttaaacttttcttcttttaattcacaatcgttatcaccaccaccaccaccagcatcatcatcatcgcgatcgataattcctcgattagggttgaatgagtatatcaagccaattaatgttgaacatgatatgagtgatgaagagttgttatggataagttcaatggtgccaaaagttaaagattttccatttaaaatacaaccaaaagtggctttcatgtttttaacaagagggccaattttgttatcaccactttgggagctattttttaaaggaaatgaaggattttattcaatttatatacattctaatccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="42916" stop="43978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43215" g_stop="43678" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E204439" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43215" e_stop="43678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATATCAAGCCAATTAATGTTGAACATGATATGAGTGATGAAGAGTTGTTATGGAGAAGTTCAATGGTGCCAAAAGTTAAAGATTTTCCATTTAAAATACAACCAAAAGTGGCTTTCATGTTTTTAACAAGAGGGCCAATTTTGTTATCACCACTTTGGGAGCTATTTTTTAAAGGAAATGAAGGATTTTATTCAATTTATATACATTCTAATCCTTCTT</genome_strand>
        <mrna_strand>GATTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATATCAAGCCAATTAATGTTGAACATGATATGAGTGATGAAGAGTTGTTATGGATAAGTTCAATGGTGCCAAAAGTTAAAGATTTTCCATTTAAAATACAACCAAAAGTGGCTTTCATGTTTTTAACAAGAGGGCCAATTTTGTTATCACCACTTTGGGAGCTATTTTTTAAAGGAAATGAAGGATTTTATTCAATTTATATACATTCTAATCCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379907" ref_strand="+" ref_description="SGN-E379907 [TUS-1-J12]">
      <seq>ttaaatcattcaacactccaataaatattataaatctcttttcttcttttttcttatttgcttgtggtataacatgtggtattattttcactttttatttcaaaaactttagtgttaacttacaagtcatcaatggtcaaattttaaacttttcttcttttaattcacaatcgttatcaccaccaccaccaccagcatcatcatcatcgcgatcgataattcctcgattagggttgaatgagtatatcaagccaattaatgttgaacatgatatgagtgatgaagagttgttatggataagttcaatggtgccaaaagttaaagattttccatttaaaatacaaccaaaagtggctttcatgtttttaacaagagggccaattttgttatcaccactttgggagctattttttaaaggaaatgaaggattttattcaatttatatacattctaatccttcttataatcaatcacaagttgatgaaagttctatttttcatggaaggagaatccctagcaaggaagttgaatggggcaaaataaatatggttgaggctgaaaaaagattactggcaaatgcccttgtcgatatctctaaatcaagatttgttcttctctctgaggcatgtattcccttgttcaatttctccactatctacactcacctaatgaactcgacgaaaaatttcgtcgagacttatgatctgcctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="42917" stop="46249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43217" g_stop="43737" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43738" i_stop="45757" i_length="2020">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45758" g_stop="45949" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="713" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E379907" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43217" e_stop="43737"/>
          <exon e_start="45758" e_stop="45949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATATCAAGCCAATTAATGTTGAACATGATATGAGTGATGAAGAGTTGTTATGGAGAAGTTCAATGGTGCCAAAAGTTAAAGATTTTCCATTTAAAATACAACCAAAAGTGGCTTTCATGTTTTTAACAAGAGGGCCAATTTTGTTATCACCACTTTGGGAGCTATTTTTTAAAGGAAATGAAGGATTTTATTCAATTTATATACATTCTAATCCTTCTTATAATCAATCACAAGTTGATGAAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATATAAAATAATGAGGCTGCTGGAATTTATTTGAGGTTATAAAACTCTACTTTGGTTTATAATATTTGTCACTTTATTGTAGTACATTGAAATTGATGAATCATTTTAATAGTAATAGTAAAGTTTTTGTAGGACTCTGACAAAACATAAATGGAATATATTTATATAACTAGAAAAATAATTAATTAAATTGAAGTATATTTAATTGTAAAGAAAAGAATAGAGTATTGAAGTAGTCTACAAGGCTATATTCTTTTCTTTATGAAAATTCAAGAATAAATCTAGTAGATTCTAGAATAATGAATTTTTTTTACTATTCCAAAAAAAAAAATAAACTAGTCAATAAAAAAAAAGGAAATTAAATAATAAATGATAAATAATTATTAAAAAGATCACAATAAAGTAGGTGAATTTCTTAGAAACCTAGTGTTTTTATTTATTGGCCAAACAATAAATCCTATTTTAATCAAGATATTTCGAGTTCACAATTAGAATAATTTAACTTTAAAATAATTAAGTTTTTCTATGCAAATTCATGTACTTTACTTTATATTTAATATTTTCGCATATGCGATTTGTCATATAATTTTATTAAGAATTAAAGGGTATATATAATGTTAGCGTAATTTAACCTGTTATATCATATTATTTATTTTGTATTTTAACTAGGTTATCAATCAATATTTAGTGTAATTATTTTAGAAGTGATTATTATTTTATATATTCAATATATAGAACTTAAATGATAGATAATAAGACTTTTGAACAATGTTTTAGTATTTTTAAAAAACAACATACGTTTCATTAAAGAAAAAATAAAACGTATATTTCAATAATTCTTTTCTAAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGATTTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTCTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACACTCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTTCTAACTACCCAAAAAAAAAAAAAGTTTTTATTGGTTTGATAATTATTTCATCAATTGCTTGAAGTATACATTTATAATTAACAGACCAATACCATTAAAATAAAATTAATTGATGAAATGCAGGAAGTTGAATGGGGCAAAATAAATATGGTTGAGGCTGAAAAAAGATTACTGGCAAATGCCCTTGTCGATATCTCTAATCAAAGATTTGTTCTTCTCTCTGAGGCATGTATTCCCTTGTTCAATTTCTCCACTATCTACACTCACCTAATGAACTCGACGAAAAATTTCGTCGAGACTTATGATCTGCCTGGC</genome_strand>
        <mrna_strand>TTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATATCAAGCCAATTAATGTTGAACATGATATGAGTGATGAAGAGTTGTTATGGATAAGTTCAATGGTGCCAAAAGTTAAAGATTTTCCATTTAAAATACAACCAAAAGTGGCTTTCATGTTTTTAACAAGAGGGCCAATTTTGTTATCACCACTTTGGGAGCTATTTTTTAAAGGAAATGAAGGATTTTATTCAATTTATATACATTCTAATCCTTCTTATAATCAATCACAAGTTGATGAAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAATGGGGCAAAATAAATATGGTTGAGGCTGAAAAAAGATTACTGGCAAATGCCCTTGTCGATATCTCTAAATCAAGATTTGTTCTTCTCTCTGAGGCATGTATTCCCTTGTTCAATTTCTCCACTATCTACACTCACCTAATGAACTCGACGAAAAATTTCGTCGAGACTTATGATCTGCCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374932" ref_strand="+" ref_description="SGN-E374932 [TUS-15-G7]">
      <seq>ttaaatcattcaacactccaataaatattataaatctcttttcttcttttttcttatttgcttgtggtataacatgtggtattattttcactttttatttcaaaaactttagtgttaacttacaagtcatcaatggtcaaattttaaacttttcttcttttaattcacaatcgttatcaccaccaccaccaccagcatcatcatcatcgcgatcgataattcctcgattagggttgaatgagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="42917" stop="43762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43217" g_stop="43462" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E374932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43217" e_stop="43462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATA</genome_strand>
        <mrna_strand>TTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391514" ref_strand="+" ref_description="SGN-E391514 [TUS-16-E13]">
      <seq>aaagttctatttttcatggaaggagaatccctagcaaggttagtttcatataaatcatataacttactttttttctctttaatattttggatttaatatttaagctgagaatgatagattgtatacgagaatttttgatttacattagaattgactcaaattaaatttatcagatagttactactctatcacgatctttgataagtaaaaagtacttaagagatcgaggagataggttcgaaccaaatgcatcactaatcctcgaaaaatattgtgcacattaataaagcaaaaaaacacttgattagagagataaaatgatcgtttagatgaatatttcttaaagttatgaaatgtattttgatatgaagacaaaaatccttgtttcatttgttcaaattttgacgaataaaactatctgataaatctattagttggattagaaatagcatgtactatgtgaaatttagtattagttaatcctccgaacaccacgattataaaaataataatatgaataattgtattatttttttctatataaaataatgaggctgctggaatttatttgaggttataaaactctactttggtttataatatttgtcactttattgtagtacattgaaattgatgaatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43400" stop="44643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43700" g_stop="44343" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E391514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43700" e_stop="44343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATATAAAATAATGAGGCTGCTGGAATTTATTTGAGGTTATAAAACTCTACTTTGGTTTATAATATTTGTCACTTTATTGTAGTACATTGAAATTGATGAATCATTT</genome_strand>
        <mrna_strand>AAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATATAAAATAATGAGGCTGCTGGAATTTATTTGAGGTTATAAAACTCTACTTTGGTTTATAATATTTGTCACTTTATTGTAGTACATTGAAATTGATGAATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392225" ref_strand="+" ref_description="SGN-E392225 [TUS-36-E14]">
      <seq>aaagttctatttttcatggaaggagaatccctagcaaggttagtttcatataaatcatataacttactttttttctctttaatattttggatttaatatttaagctgagaatgatagattgtatacgagaatttttgatttacattagaattgactcaaattaaatttatcagatagttactactctatcacgatctttgataagtaaaaagtacttaagagatcgaggagataggttcgaaccaaatgcatcactaatcctcgaaaaatattgtgcacattaataaagcaaaaaaacacttgattagagagataaaatgatcgtttagatgaatatttcttaaagttatgaaatgtattttgatatgaagacaaaaatccttgtttcatttgttcaaattttgacgagggggactatctgataaatctattagttggattagaaatagcatgtactatgtgaaatttagtattagttaatcctccgaacaccacgattataaaaataataatatgaataattgtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43400" stop="44529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43700" g_stop="44230" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E392225" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43700" e_stop="44230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATT</genome_strand>
        <mrna_strand>AAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAGGGGGACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205150" ref_strand="+" ref_description="SGN-E205150 [cLEC-16-O14]">
      <seq>aagttctatttttcatggaaggagaatccctagcaaggttagtttcatataaatcatataacttactttttttctctttaatattttggatttaatatttaagctgagaatgatagattgtatacgagaatttttgatttacattagaattgactcaaattaaatttatcagatagttactactctatcacgatctttgataagtaaaaagtacttaagagatcgaggagataggttcgaaccaaatgcatcactaatcctcgaaaaatattgtgcacattaataaagcaaaaaaacacttgattagagagataaaatgatcgtttagatgaatatttcttaaagttatgaaatgtattttgatatgaagacaaaaatccttgtttcatttgttcaaattttgacgaataaaactatctgataaatctattagttggattagaaatagcatgtactatgtgaaatttagtattagttaatcctccgaacaccacgattataaaaataataatatgaataattgtattatttttttctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43401" stop="44541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43701" g_stop="44241" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E205150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43701" e_stop="44241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATAT</genome_strand>
        <mrna_strand>AAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391513" ref_strand="+" ref_description="SGN-E391513 [TUS-16-E13](-)">
      <seq>gttttagtatttttaaaaaacaacatacgtttcattaaagaaaaaataaaacgtatatttcaataattcttttctaaattattcctttttatcaagttccctaaattatttaagaaagcctaatttactctttttttttaaattactatttcaatatttttttccatttatgtcagattttctctgacaaatcattgattttatggcctctttgtttggatacatagttgtttataatattaaatgggaactgtaaaaccatgtgtcctttaatgagaagcaaactactcatgctccttgttagattttttggttatcccaccaaatattccgtattcgttttgagatctaactaatataaattacgttaaaaaagtttattttaaaaattaaatgtttcctacctaatgcgtcttaatccatgtgtagaatttgaatacgaaatcttaattactcttttagtatataatttatcagcattatctgttatctgtttaagatccgtttgatctgaattctaagacaaaaatagtaccaccaccagtttattttatttttagccatatatgaaatgaaattggacctacactcaaactttttctggtggaaaaaaacttataaatgcttctaactacccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44708" stop="45954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45008" g_stop="45654" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E391513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45008" e_stop="45654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGTATTTTTAAAAAACAACATACGTTTCATTAAAGAAAAAATAAAACGTATATTTCAATAATTCTTTTCTAAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGATTTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTCTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACACTCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTTCTAACTACCCAAAAAAAAAA</genome_strand>
        <mrna_strand>GTTTTAGTATTTTTAAAAAACAACATACGTTTCATTAAAGAAAAAATAAAACGTATATTTCAATAATTCTTTTCTAAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGATTTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTCTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACACTCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTTCTAACTACCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392471" ref_strand="+" ref_description="SGN-E392471 [TUS-36-E14](-)">
      <seq>aaattattcctttttatcaagttccctaaattatttaagaaagcctaatttactctttttttttaaattactatttcaatatttttttccatttatgtcagaccttctctgacaaatcattgattttatggcctctttgtttggatacatagttgtttataatattaaatgggaactgtaaaaccatgtgtcctttaatgagaagcaaactactcatgctccttgttagattttttggttatcccaccaaatattccgtattcgttttgagatctaactaatataaattacgttaaaaaagtttattttaaaaattaaatgtttcctacctaatgcgtcttaatccatgtgtagaatttgaatacgaaatcttaattactcttttagtatataatttatcagcattatctgttatctgtttaagatccgtttgatctgaattttaagacaaaaatagtaccaccaccagtttattttatttttagccatatatgaaatgaaattggacctacaatcaaactttttctggtggaaaaaaacttataaatgctaaaaactacacaaaaaaaaaaaaaaaaaactggggggggggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44783" stop="58638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45083" g_stop="45657" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45658" i_stop="46593" i_length="936">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.767" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46594" g_stop="46614" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="595" r_length="20" r_score="0.524"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E392471" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45083" e_stop="45657"/>
          <exon e_start="46594" e_stop="46614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGATTTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTCTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACACTCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTTCTAACTACCCAAAAAAAAAAAAAGTTTTTATTGGTTTGATAATTATTTCATCAATTGCTTGAAGTATACATTTATAATTAACAGACCAATACCATTAAAATAAAATTAATTGATGAAATGCAGGAAGTTGAATGGGGCAAAATAAATATGGTTGAGGCTGAAAAAAGATTACTGGCAAATGCCCTTGTCGATATCTCTAATCAAAGATTTGTTCTTCTCTCTGAGGCATGTATTCCCTTGTTCAATTTCTCCACTATCTACACTCACCTAATGAACTCGACGAAAAATTTCGTCGAGACTTATGATCTGCCTGGCCCAGTGGGCCGGGGTCGGTACCATCCACGGATGAGCCCGACGATCAAACTTGCGCAATGGAGAAAAGGTTCTCAGTGGTTCGAAATGGACAGAGATCTCGCTTTAGAGGTTGTTTCGGACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTGATTTTTTCCTTTCTTATTTTTTACTCTTGTAAAAAAGCAAATGTGAGATAGGTAAGAATTTCATTTTTTTTTGTGTAATAGAGAAAATGATGAGAAGTGTCA</genome_strand>
        <mrna_strand>AAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGACCTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTTTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACAATCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTAAAAACTACACAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTG-GGGGGGGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374931" ref_strand="+" ref_description="SGN-E374931 [TUS-15-G7](-)">
      <seq>gcctggcccagtgggccggggtcggtaccatccacggatgagcccgacgatcaaacttgcgcaatgaaaaaaaggttttcagtggttcgaaatggacaaagatctcgctttaaaggttgtttcggaccaaacgtatttttcggttttcaaaaaacactgtaagggctcgtgctatgctgatgaacattttttaccaacttttgtaagcatgaaattcgaaaaaaggaatacgggtcgaactttgacttgggtcgattggtccaagggcgggccccacccgacccgtttttataggtcggatataagtgtggagtttttgaaaaaacttaggagtgaaagtagttgtgagtacaatggtgaaaaaacaagtatttgtcatttgtttgcaaggaaatttacaccacatgctttgagtaaattattgatttttgccccaaaggtgatgcaatttaaccattaatttaggattaattaacccaaattgatgtacatggggaaaaaaaaaaatcaattttttgtacttgatcaaatgatcaatgtgttcatttattaattcagtctttgattttgatttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="45643" stop="58638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45943" g_stop="46512" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46513" i_stop="46714" i_length="202">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46715" g_stop="46743" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="599" r_length="29" r_score="0.759"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E374931" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45943" e_stop="46512"/>
          <exon e_start="46715" e_stop="46743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCCAGTGGGCCGGGGTCGGTACCATCCACGGATGAGCCCGACGATCAAACTTGCGCAATGGAGAAAAGGTTCTCAGTGGTTCGAAATGGACAGAGATCTCGCTTTAGAGGTTGTTTCGGACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTGATTTTTTCCTTTCTTATTTTTTACTCTTGTAAAAAAGCAAATGTGAGATAGGTAAGAATTTCATTTTTTTTTGTGTAATAGAGAAAATGATGAGAAGTGTCATGCGATAATATTTATACGTGTATTTAGGTTATATCATGTATTTTCATCTTTTCTATATATATATATATATTGTATCATTTGTTTTCGTATAATTTGTATCATTTATGATATAAAAATACAATAAAAAAA</genome_strand>
        <mrna_strand>GCCTGGCCCAGTGGGCCGGGGTCGGTACCATCCACGGATGAGCCCGACGATCAAACTTGCGCAATGAAAAAAAGGTTTTCAGTGGTTCGAAATGGACAAAGATCTCGCTTTAAAGGTTGTTTCGGACCAAACGTATTTTTCGGTTTTCAAAAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTTGTAAGCATGAAATTCGAAAAAAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAAAGTAGTTGTGAGTACAATGGTGAAAAAACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAAATTATTGATTTTTGCCCCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACCCAAATTGATGTACATGGGGAAAAAAAAAAATCAATTTTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTG..........................................................................................................................................................................................................ATTTAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716401" ref_strand="+" ref_description="SGN-E716401 [FB16DG10]">
      <seq>accagacgtatttctcggttttcaagaaacactgtaagggctcgtgctatgctgatgaacattttttaccaactttcgtaagcatgaaattcgaaaagaggaatacgggtcgaactttgacttgggtcgattggtccaagggcgggccccacccgacccgtttttataggtcggatataagtgtggagtttttgaaaaaacttaggagtgagagtagttgtgagtacaatggtgagaagacaagtatttgtcatttgtttgcaaggaaatttacaccacatgctttgagtagattattgatttttgcaccaaaggtgatgcaatttaaccattaatttaggattaattaacacaaattgatgtacatggggaaaaaaaaaaatcaattctttgtacttgatcaaatgatcaatgtgttcatttattaattcagtctttgattttgattttttcctttcttattttttactcttgtaaaaaagcaaatgtgagataggtaagaatttcatttttttttgtgtaatagagaaaatgatgagaagtgtcatgcgataatatttatacgtgtatttaggttatatcatgaattttcatcttttctatatatatatatatattgtatcatttgttttcgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="45768" stop="47006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46068" g_stop="46709" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E716401" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46068" e_stop="46709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTGATTTTTTCCTTTCTTATTTTTTACTCTTGTAAAAAAGCAAATGTGAGATAGGTAAGAATTTCATTTTTTTTTGTGTAATAGAGAAAATGATGAGAAGTGTCATGCGATAATATTTATACGTGTATTTAGGTTATATCATGTATTTTCATCTTTTCTATATATATATATATATTGTATCATTTGTTTTCGTATAATTT</genome_strand>
        <mrna_strand>ACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTGATTTTTTCCTTTCTTATTTTTTACTCTTGTAAAAAAGCAAATGTGAGATAGGTAAGAATTTCATTTTTTTTTGTGTAATAGAGAAAATGATGAGAAGTGTCATGCGATAATATTTATACGTGTATTTAGGTTATATCATGAATTTTCATCTTTTCTATATATATATATATATTGTATCATTTGTTTTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379521" ref_strand="+" ref_description="SGN-E379521 [TUS-1-J12](-)">
      <seq>aaagaggaatacgggtcgaactttgtcttgggttgattggtccaagggcgggccccacccgtcccgtttttataggtcggatataagtgtggagtttttgaaaaaacttaggagtgagagtagttgtgagtacaatggggagaagacaagtatttgtcatttgtttgcaaggaaatttacaccacatgctttgagtagattattgatttttgcaccaaaggtgatgcaatttaaccattaatttaggattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="45862" stop="46715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46162" g_stop="46415" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E379521" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46162" e_stop="46415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATT</genome_strand>
        <mrna_strand>AAAGAGGAATACGGGTCGAACTTTGTCTTGGGTTGATTGGTCCAAGGGCGGGCCCCACCCGTCCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGGGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237300" ref_strand="+" ref_description="SGN-E237300 [cLEL-7-J11](-)">
      <seq>tgaagtttcaccttctcatgacactgctactgattctgtttctgactctcctgctgtttctgaagataatacctgtggtgcagctagtcagtagtgacaatttttttttactagtttgttattctgagttatgtaaattaacctcttatttttaatctataagagagaatttaggagtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49261" stop="48482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48961" g_stop="48763" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E237300" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48961" e_stop="48763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAACTGAAA</genome_strand>
        <mrna_strand>TGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237386" ref_strand="+" ref_description="SGN-E237386 [cLEL-7-H12](-)">
      <seq>tgaagtttcaccttctcatgacactgctactgattctgtttctgactctcctgctgtttctgaagataatacctgtggtgcagctagtcagtagtgacaatttttttttactagtttgttattctgagttatgtaaattaacctcttatttttaatctataagagagaatttaggagtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49261" stop="48482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48961" g_stop="48763" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E237386" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48961" e_stop="48763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAACTGAAA</genome_strand>
        <mrna_strand>TGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237146" ref_strand="+" ref_description="SGN-E237146 [cLEL-7-H22](-)">
      <seq>cttctcatgaccctgctactgattctgtttctgactctcctgctgtttctgaagataatacctgtggtgcagctagtcagtagtgacaatttttttttactagtttgttattctgagttatgtaaattaacctcttatttttaatctataagagagaatttaggagtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49250" stop="48482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48950" g_stop="48763" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E237146" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48950" e_stop="48763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAACTGAAA</genome_strand>
        <mrna_strand>CTTCTCATGACCCTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313749" ref_strand="-" ref_description="SGN-E313749 [cTOA-17-D15]">
      <seq>caagatgggtgcaatccgtggtgagggaagaatggaccgcggaagtgttcgatctggagttgatgaggtataaggacatcgaggaagaaatggtagggctattgcagatagctatggcatgcacttcaacatcaccagatcaaaggcctaaaataaattatgttgtgaaaatgattgaagagttgagaggtgttgaagtttcaccttctcatgacactgctactgattctgtttctgactctcctgctgtttctgaagataatacctgtggtgcagctagtcagtagtgacaatttttttttactagtttgttattctgagttatgtaaattaacctcttatttttaatctataagagagaatttaggagcaagttttcataaaaaaaaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49454" stop="48469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49154" g_stop="48769" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="405"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E313749" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313749" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49154" e_stop="48769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGGGTGCAATCCGTGGTGAGGGAAGAATGGACCGCGGAAGTGTTCGATCTGGAGTTGATGAGGTATAAGGACATCGAGGAAGAAATGGTAGGGCTATTGCAGATAGCTATGGCATGCACTTCAACATCACCAGATCAAAGGCCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAA</genome_strand>
        <mrna_strand>CAAGATGGGTGCAATCCGTGGTGAGGGAAGAATGGACCGCGGAAGTGTTCGATCTGGAGTTGATGAGGTATAAGGACATCGAGGAAGAAATGGTAGGGCTATTGCAGATAGCTATGGCATGCACTTCAACATCACCAGATCAAAGGCCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGCAAGTTTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313750" ref_strand="-" ref_description="SGN-E313750 [cTOA-17-D17]">
      <seq>gtgttcgatttggagttgatgaggtataaggccatcgaggaagaaatggtagggttattgcagatagttatggcatgcacttcaacatcaccagatcaaaggcttaaaataaattatgttgtgaaaatgattaaagagttgagaggtgttgaagtttcaccttctcatgacactgctactgattctgtttctgactctcctgctgtttctgaagataatacctgtggtgcagctagtcagtagtgacaatttttttttactagtttgttattctgagttatgttaattaacctcttatttttaatccataagagagaatttaggacccagttttcataaaaaaaacccccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49410" stop="48486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49110" g_stop="48769" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="361"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E313750" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313750" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49110" e_stop="48769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCGATCTGGAGTTGATGAGGTATAAGGACATCGAGGAAGAAATGGTAGGGCTATTGCAGATAGCTATGGCATGCACTTCAACATCACCAGATCAAAGGCCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAA</genome_strand>
        <mrna_strand>GTGTTCGATTTGGAGTTGATGAGGTATAAGGCCATCGAGGAAGAAATGGTAGGGTTATTGCAGATAGTTATGGCATGCACTTCAACATCACCAGATCAAAGGCTTAAAATAAATTATGTTGTGAAAATGATTAAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTTAATTAACCTCTTATTTTTAATCCATAAGAGAGAATTTAGGACCCAGTTTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614466" ref_strand="+" ref_description="SGN-E614466 [64253]">
      <seq>tgttgcaatccgtggtgagggaagaatggactgcggaagtgttcgatttggagttgatgaggtataaggacattgaggaggaaatggtggggctattgcagatagctatggcatgtacttcaacatcacccagatcanaggccctaaaataaattatgttgtgaaaatgattgaagagttgagaggtgttgaagtttcaccttctcatgacactgctactgattctgtttctgactctcctgctgtttctgaagataatacatgtggtgcagctagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="49447" stop="48573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49148" g_stop="48876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E614466" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49148" e_stop="48876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCAATCCGTGGTGAGGGAAGAATGGACCGCGGAAGTGTTCGATCTGGAGTTGATGAGGTATAAGGACATCGAGGAAGAAATGGTAGGGCTATTGCAGATAGCTATGGCATGCACTTCAACATCA-CCAGATCAAAGG-CCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTA</genome_strand>
        <mrna_strand>TGTTGCAATCCGTGGTGAGGGAAGAATGGACTGCGGAAGTGTTCGATTTGGAGTTGATGAGGTATAAGGACATTGAGGAGGAAATGGTGGGGCTATTGCAGATAGCTATGGCATGTACTTCAACATCACCCAGATCANAGGCCCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACATGTGGTGCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322605" ref_strand="+" ref_description="SGN-E322605 [cTOB-26-G1]">
      <seq>tcccaaaaatacccatcatagtagtggtaaaatgagctcattagcaataatcgctatcatactaggtgatgtgttggttctgtgtgttgtgtgtatttttctctactgtttcttctgcattaggaaagtttcttcacagaagaatgggtcacacattcttgaaggtgagaagattgtatactcgtctagcccgtatcctaatacgggccagacgagtgggttcgagagaggaaaaatggtgtttttcgaaggggcgaagaggtttgagcttgaggatttgttgagagcttcagctgagatgttgggaaaaggaggatttgggactgcttataaggctgtgttggatgatggaaatgttgtggctgtgaaaagattgaaagaattgaatgtttgtgggaaaagagaaatttgagcacaaatggaagttttangaagacttagacacccaaatttggttagtttgaaagcatattactttgctagagatgagaaaagtgtggtgtatgagttcatgactaatgggcacttgtttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52114" stop="50979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51814" g_stop="51279" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E322605" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51814" e_stop="51279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAAAATACCCATCATAGTAGTGGTAAAATGAGCTCATTAGCAATAATCGCTATCATACTAGGTGATGTGTTGGTTCTGTGTGTTGTGTGTATTTTTCTCTACTGTTTCTTCTGCATTAGGAAAGTTTCTTCACAGAAGAATGGGTCACACATTCTTGAAGGTGAGAAGATTGTATACTCGTCTAGCCCGTATCCTAATACGGGCCAGACGAGTGGGTTCGAGAGAGGAAAAATGGTGTTTTTCGAAGGGGCGAAGAGGTTTGAGCTTGAGGATTTGTTGAGAGCTTCAGCTGAGATGTTGGGAAAAGGAGGATTTGGGACTGCTTATAAGGCTGTGTTGGATGATGGAAATGTTGTGGCTGTGAAAAGATTGAAAGAATTGAATGTTTGTGGGAAAAGAG-AATTTGAGCAACAAATGGAAGTTTTAGGAAGACTTAGACACCCAAATTTGGTTAGTTTGAAAGCATATTACTTTGCTAGAGATGAGAAGTTGTTGGTGTATGAGTTCATGACTAATGGCAACTTGTTTTGGC</genome_strand>
        <mrna_strand>TCCCAAAAATACCCATCATAGTAGTGGTAAAATGAGCTCATTAGCAATAATCGCTATCATACTAGGTGATGTGTTGGTTCTGTGTGTTGTGTGTATTTTTCTCTACTGTTTCTTCTGCATTAGGAAAGTTTCTTCACAGAAGAATGGGTCACACATTCTTGAAGGTGAGAAGATTGTATACTCGTCTAGCCCGTATCCTAATACGGGCCAGACGAGTGGGTTCGAGAGAGGAAAAATGGTGTTTTTCGAAGGGGCGAAGAGGTTTGAGCTTGAGGATTTGTTGAGAGCTTCAGCTGAGATGTTGGGAAAAGGAGGATTTGGGACTGCTTATAAGGCTGTGTTGGATGATGGAAATGTTGTGGCTGTGAAAAGATTGAAAGAATTGAATGTTTGTGGGAAAAGAGAAATTTGAGC-ACAAATGGAAGTTTTANGAAGACTTAGACACCCAAATTTGGTTAGTTTGAAAGCATATTACTTTGCTAGAGATGAGAAAAGTGTGGTGTATGAGTTCATGACTAATGGGCACTTGTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474042" ref_strand="+" ref_description="SGN-E474042 [cSTB-34-F5]">
      <seq>gctttatagacttgatctgtcttataataagttttccggtgagattccggtgaaggtgaatcgtttgacccatttgcttactcttcgtcttgaaggaaatgggtcttccggtgagattattggggttaatctacctaatcttcaagagtttaacgtttccggtaacaaacttgtcggagaaatacccatttcgctatctcgtttcccggaatctgcattttcgaagaaccgggttctttgtggttctccgttgacaaactgtacggcggcggttcctcgtgaaccgtcgtcgtcggcaggagcaatggcttctccggtgagtcctaaaactaccattgcatcttctccgagctcattgccggtgacctctgcaactttgagtccaaaaaatacccatcatagtagtggtaaaatgagctcattggccataatcgccattatactaagtgatgtgttggctctatgtgttgtgtgcatttttctctactgtttcttctgcattaggaaagtttcttctcagaaaaatgggtcgcacattcttgaaggtgagaagattgtgtactcgtctagcccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52495" stop="51320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52195" g_stop="51620" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E474042" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52195" e_stop="51620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCGGTGAGATTTCTGGGGTTAATCTACCTAATCTTCAAGAGTTTAACGTTTCCGGTAACAAACTCGTCGGAGAAATACCCCTTTCTCTATCTCGTTTCCCGGTATCTGCATTTTCGAAGAACCGGGTTCTCTGTGGTTCTCCGTTGCCTAACTGTACGGCGGAGGTTCCTCGTGAACCGTCGCCGTCGACAGGAGCAATAGCTTCTCCGGTTAGTCCTAAAACTACCGTTGCATCTTCTCCGAGCTCATTGCCGGTGACATCTGCAACTTTGAGTCCCAAAAATACCCATCATAGTAGTGGTAAAATGAGCTCATTAGCAATAATCGCTATCATACTAGGTGATGTGTTGGTTCTGTGTGTTGTGTGTATTTTTCTCTACTGTTTCTTCTGCATTAGGAAAGTTTCTTCACAGAAGAATGGGTCACACATTCTTGAAGGTGAGAAGATTGTATACTCGTCTAGCCCGTA</genome_strand>
        <mrna_strand>GCTTTATAGACTTGATCTGTCTTATAATAAGTTTTCCGGTGAGATTCCGGTGAAGGTGAATCGTTTGACCCATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTCTTCCGGTGAGATTATTGGGGTTAATCTACCTAATCTTCAAGAGTTTAACGTTTCCGGTAACAAACTTGTCGGAGAAATACCCATTTCGCTATCTCGTTTCCCGGAATCTGCATTTTCGAAGAACCGGGTTCTTTGTGGTTCTCCGTTGACAAACTGTACGGCGGCGGTTCCTCGTGAACCGTCGTCGTCGGCAGGAGCAATGGCTTCTCCGGTGAGTCCTAAAACTACCATTGCATCTTCTCCGAGCTCATTGCCGGTGACCTCTGCAACTTTGAGTCCAAAAAATACCCATCATAGTAGTGGTAAAATGAGCTCATTGGCCATAATCGCCATTATACTAAGTGATGTGTTGGCTCTATGTGTTGTGTGCATTTTTCTCTACTGTTTCTTCTGCATTAGGAAAGTTTCTTCTCAGAAAAATGGGTCGCACATTCTTGAAGGTGAGAAGATTGTGTACTCGTCTAGCCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312309" ref_strand="+" ref_description="SGN-E312309 [cTOA-5-C5]">
      <seq>tccattacacttttctctcattcttcttcctcttcacccttcttgaatctaccccaaacccagatattgcgccattgctagctttcaaatcagcttcagatgaaacaaactcactttacaactggaactcatcaactgacccctgttcttggactggtgtatcttgtcttaacaatagggtgtcaagacttgttcttgaaggtcttaatctaaaagggtcttttcagaatctggtgtttctcaaagagttgagagtattgagcttgaaatataataatttttctggttctgttccgaatctttcgaaccttactgctttgaagctgttgtttctttcacataatgagctttctggggagttctctgagtcgttaacctcgctttttaagctttatagacttgatctgtcgtataataagttttccggggagattccggctaaggtcaatcatttgacacatttgcttactcttcgtcttgaaggaaatgggttttccggtgagatttctggggttaatctacctaatcttcaagagtttaacgtttccggtaacaaactcgtcggagaaatacccctttctctatctcgtttcccggtatctgcattttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52883" stop="51673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52583" g_stop="51973" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E312309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52583" e_stop="51973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACACTTTTCTCTCATTCTTCTTCCTCTTCACCCTTCTTGAATCTACCCCAAACCCAGATATTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCGGTGAGATTTCTGGGGTTAATCTACCTAATCTTCAAGAGTTTAACGTTTCCGGTAACAAACTCGTCGGAGAAATACCCCTTTCTCTATCTCGTTTCCCGGTATCTGCATTTTCG</genome_strand>
        <mrna_strand>TCCATTACACTTTTCTCTCATTCTTCTTCCTCTTCACCCTTCTTGAATCTACCCCAAACCCAGATATTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCGGTGAGATTTCTGGGGTTAATCTACCTAATCTTCAAGAGTTTAACGTTTCCGGTAACAAACTCGTCGGAGAAATACCCCTTTCTCTATCTCGTTTCCCGGTATCTGCATTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390459" ref_strand="+" ref_description="SGN-E390459 [TUS-40-A7]">
      <seq>ctccattacacttttctctcattcttcttcctcttcacccttcttgaatctaccccaaacccagatattgcgccattgctagctttcaaatcagcttcagatgaaacaaactcactttacaactggaactcatcaactgacccctgttcttggactggtgtatcttgtcttaacaatagggtgtcaagacttgttcttgaaggtcttaatctaaaagggtcttttcagaatctggtgtttctcaaagagttgagagtattgagcttgaaatataataatttttctggttctgttccgaatctttcgaaccttactgctttgaagctgttgtttctttcacataatgagctttctggggagttctctgagtcgttaacctcgctttttaagctttatagacttgatctgtcgtataataagtttgcgggggagattccggctaaggtcaatcatttgacacatttgcttactcttcgtcttgaaggaaatgggttttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52884" stop="51786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52584" g_stop="52086" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E390459" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52584" e_stop="52086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTACACTTTTCTCTCATTCTTCTTCCTCTTCACCCTTCTTGAATCTACCCCAAACCCAGATATTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCG</genome_strand>
        <mrna_strand>CTCCATTACACTTTTCTCTCATTCTTCTTCCTCTTCACCCTTCTTGAATCTACCCCAAACCCAGATATTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTGCGGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313552" ref_strand="+" ref_description="SGN-E313552 [cTOA-12-O6]">
      <seq>ttgcgccattgctagccttcaaatcagcttcagatgaaacaaactcactttacaactggaactcatcaactgacccctgttcttggactggtgtatcttgtcttaacaatagggtgtcaagacttgttcttgaaggtcttaatctaaaagggtcttttcagaatctggtgtttctcaaagagttgagagtattgagcttgaaatataataatttttctggttctgttccgaatctttcgaaccttactgctttgaagcttggtgttctttcacataatgagctttctggggagttctctgagtcgttaacctcgctttttaagctttatagacttgatctgtcgtataataagtttttcggggagattccggctaaggtcaatcatttgacacatttgcttactcttcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52817" stop="51805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52517" g_stop="52105" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E313552" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52517" e_stop="52105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGC-TGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTT</genome_strand>
        <mrna_strand>TTGCGCCATTGCTAGCCTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTTGGTG-TTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTTCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54707" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55007" g_stop="55331" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55007" e_stop="55331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAACATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACAAAATATATACACTTTTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54707" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55007" g_stop="55314" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55007" e_stop="55314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAACATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACAAAATATATACACTTTTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTTTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="54708" stop="55758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55008" g_stop="55458" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55008" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAACATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACAAAATATATACACTTTTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGATGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475825" ref_strand="+" ref_description="SGN-E475825 [cSTB-41-L24]">
      <seq>aagttcttcactttcacttcactctatgtattctctgcatttccatttcacaatcagaccaaaaaactatgaaatcaacaacaaattttcatcaatttgttcatggaaatcgagtttctcgtctttggaatacgttaaattcaatttgaagaatgagaattttaaaacttattattatagaaaaggggattttttaggaggagatgcaatgggagtagagaagaatgttggatgtgaagtggaagttgtttcgtggagagaacgaaagattaaagctgagattttggtgaatgctgatgttgattctgtttggaatgctcttactgattatgaaaggctcgctgattttgtcccaaatcttgttagcagtaggagaattctttgtccacatcctggacgtatttggttggagcaaagaggtatccaacgatcactctattggcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62220" stop="64276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62520" g_stop="62888" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.375" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63898" g_stop="63976" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="448" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E475825" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62520" e_stop="62888"/>
          <exon e_start="63898" e_stop="63976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAAACCAAAAAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAGGTAATAGATGCAATGTATCTCCTTTTTGCTAATAAATGATGTTTGTGTTGTAAATCGGAGCGAGGATTTGAAGCTTATGAGTTTGGGATTTTAGGGGGGGAGTTGGAGTGGTTAGTTGCTAGTTGAGACTAAGTTGAGCTTAGGGGTGAAGCTAGATAGGGTCGAGAGGTTCATCTAAATACCCTTCGTCGAAAAATTACACTATTTATACATGGTTGATTTTTTTTATATGTATATATATAGTAGACGTTGAACTTTCTTTCGGCTTCTTTGTGTGTTTATTTATTCATATTTCGAACCTATTTCAGTGAAAATTCTGGCTCCGCCATTGGTTGAGATGTTTAGATGTGCACTCTCAAAGTTATAGTGCTTTATGTGTGAGTTGAGGACAAGTTTGAGTGTGTGTTTACGTATTATGACTTCTTTACATATTGAATGTATTCTTAAAACAAATATAGGATTTGAATCAAAACTAATGTTTTTGGCAAAATCAACATCCTACACTCTACATTCGATCTTGTTACCAAGGGGTGTGAACTAGTGATCAATGAAGTGAGTGGAGAACCGTGAGGTCTTATGCTTAAATTAATACAGAGGCACAAAAAATGCTATGTGGTTTCTTCCTATAGCATTGATAGATAGAGTTACTTGGATATCTATATTAGTGAGGAGCTAACAGGTACCTAGAGGAATAGTCAGGTGCGGGCAAGCTAGCTCAAACACCTCATTTTGTTTTTCGTGAAGTTCGTACTTTGGTACAACTTGAGACATGCCTACAACTTACTGCAATGAGAGGCTGTCTTTGGCCTTTATTCTTCTGGTACAATTCGGAATAAACATATTCGGTACAAACAGTAGAGATGGATATCTGTTACGGGCGTCTCTAGAGTCTTTGCTGACATTCATATTATCTTGAAGTTCTCTGTTTGTCATATCGTCATGGTTCTGATGATTTTTTGGGATATACTTTGCACTACACACTGATGCATGAATCACTTGTTAATCACAGTAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATA</genome_strand>
        <mrna_strand>AAGTTCTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAGACCAAAAAACTATGAAATCAACAACAAATTTTCATCAATTTGTTCATGGAAATCGAGTTTCTCGTCTTTGGAATACGTTAAATTCAATTTGAAGAATGAGAATTTTAAAACTTATTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAGAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTTTGGAATGCTCTTACTGATTATGAAAGGCTCGCTGATTTTGTCCCAAATCTTGTTAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAGAATTCTTTGTCCACATCCTGGACGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCACTCTATTGGCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481066" ref_strand="+" ref_description="SGN-E481066 [cSTD-16-I8]">
      <seq>caaaaaactatgaaatcaacaacaaattttcatcaatttgttcatggaaatcaagtttctcgtctttggaaaacgttaaattcgatttgaagaatgagaattttaaaacttattattacagaaaaggggattttttaggaggagatgcaatgggagtagagaaaaatgttggatgtgaagtggaagttgtttcgtggagagaacgaaagattaaagctgagattttggtgaatgctgatgttgattctgtttggaatgctcttactgattatgaaaggctcgctgattttgtcccaaatcttgttagcagtaggagaattccttgtccacatcctggacgtatttggttggagcaaagaggtatccaacgatcactctattggcacatagaagctcgtgttgtattggatctccaagaattcatcaaatcgaataatgttcgcgagctccatttctctatggttgacggtgacttcaagaagtttgaaggcaaatggtctgtgagagttggaacaaggtcttcaacagctatactaagttatgaagttagtgtcataccaaggttcaactttcctgccattttcttggagaggattatcangtcagacctcccggtaaatcttcaagcgttgtcctgtagagctgaaaacagttatcaaggttatcagagtgttaccaaagaagaacctggttcttaccttatttnncactagacagatattgatcatgtcatttcccacgaaaataaatcttccggtgaacacttaaaggacaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62279" stop="64848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62579" g_stop="62888" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63898" g_stop="64018" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="431" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64111" g_stop="64196" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="517" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64304" g_stop="64494" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="708" r_length="191" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E481066" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62579" e_stop="62888"/>
          <exon e_start="63898" e_stop="64018"/>
          <exon e_start="64111" e_stop="64196"/>
          <exon e_start="64304" e_stop="64494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAGGTAATAGATGCAATGTATCTCCTTTTTGCTAATAAATGATGTTTGTGTTGTAAATCGGAGCGAGGATTTGAAGCTTATGAGTTTGGGATTTTAGGGGGGGAGTTGGAGTGGTTAGTTGCTAGTTGAGACTAAGTTGAGCTTAGGGGTGAAGCTAGATAGGGTCGAGAGGTTCATCTAAATACCCTTCGTCGAAAAATTACACTATTTATACATGGTTGATTTTTTTTATATGTATATATATAGTAGACGTTGAACTTTCTTTCGGCTTCTTTGTGTGTTTATTTATTCATATTTCGAACCTATTTCAGTGAAAATTCTGGCTCCGCCATTGGTTGAGATGTTTAGATGTGCACTCTCAAAGTTATAGTGCTTTATGTGTGAGTTGAGGACAAGTTTGAGTGTGTGTTTACGTATTATGACTTCTTTACATATTGAATGTATTCTTAAAACAAATATAGGATTTGAATCAAAACTAATGTTTTTGGCAAAATCAACATCCTACACTCTACATTCGATCTTGTTACCAAGGGGTGTGAACTAGTGATCAATGAAGTGAGTGGAGAACCGTGAGGTCTTATGCTTAAATTAATACAGAGGCACAAAAAATGCTATGTGGTTTCTTCCTATAGCATTGATAGATAGAGTTACTTGGATATCTATATTAGTGAGGAGCTAACAGGTACCTAGAGGAATAGTCAGGTGCGGGCAAGCTAGCTCAAACACCTCATTTTGTTTTTCGTGAAGTTCGTACTTTGGTACAACTTGAGACATGCCTACAACTTACTGCAATGAGAGGCTGTCTTTGGCCTTTATTCTTCTGGTACAATTCGGAATAAACATATTCGGTACAAACAGTAGAGATGGATATCTGTTACGGGCGTCTCTAGAGTCTTTGCTGACATTCATATTATCTTGAAGTTCTCTGTTTGTCATATCGTCATGGTTCTGATGATTTTTTGGGATATACTTTGCACTACACACTGATGCATGAATCACTTGTTAATCACAGTAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCCGTAAGCTTATGAAATCTCTGTGTATGATAGTTCATCTGAGTTGGGTGTCTAAACCAAGAGCTGTGTTTTACATTACTCTTGTATAAATTTAGGATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAGGTATGATCTTTATCGAAGCAGACAGAACTTTGTTGTTCCTAATTTTCCTTTTATGTTGTCTTCAAGAATAATGCAGAGATCGACCTGCAAATGCCTTTTCTTTTCAGGTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATC</genome_strand>
        <mrna_strand>CAAAAAACTATGAAATCAACAACAAATTTTCATCAATTTGTTCATGGAAATCAAGTTTCTCGTCTTTGGAAAACGTTAAATTCGATTTGAAGAATGAGAATTTTAAAACTTATTATTACAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTTTGGAATGCTCTTACTGATTATGAAAGGCTCGCTGATTTTGTCCCAAATCTTGTTAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAGAATTCCTTGTCCACATCCTGGACGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCACTCTATTGGCACATAGAAGCTCGTGTTGTATTGGATCTCCAAGAATTCATCAAATCG............................................................................................AATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCTGTGAGAGTTGGAACAAG...........................................................................................................GTCTTCAACAGCTATACTAAGTTATGAAGTTAGTGTCATACCAAGGTTCAACTTTCCTGCCATTTTCTTGGAGAGGATTATCANGTCAGACCTCCCGGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAGTGTTACCAAAGAAGAACCTGGTTCTTACCTTATTTNNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406178" ref_strand="+" ref_description="SGN-E406178 [PPI-3-A17]">
      <seq>aaactatgaaatcaacaacaaattttcatcaatttgttcatggaaatcgagtttctcgtctttggaatacgttaaattcgattcgaagaatgagaattttaaagcttattattacagaaaaggggattttttaggaggagatgcaatgggagtagagaaaaatgttggatgtgaagtggaagttgtttcgtggagagaacgaaagattaaagctgagattttggtgaatgctgatgttgattctgtttggaatgctcttactgattatgaaaggctcgctgattttgtcccaaatcttgtcagcagtaggagaattccttgtccacatcctggacgtatttggttggagcaaagaggtatccaacgatcactctattggcacatagaagctcgtgttgtattggatctccaagaattcatcaaatcgaataatgttcgcgagctccatttctctatggttgacggtgacttcaagaagtttgaaggcaaatggtctgtgagagttggaacaaggtcttcaacagctatactaagttatgaagttagtgtcataccaaggttcaactttcctgccatattcttggagaggattatcaggtcagacctcccngtaaatcttcaagcattgtcctgtagagctgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62283" stop="64736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62583" g_stop="62888" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63898" g_stop="64018" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="427" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64111" g_stop="64196" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="513" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64304" g_stop="64436" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="646" r_length="133" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E406178" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62583" e_stop="62888"/>
          <exon e_start="63898" e_stop="64018"/>
          <exon e_start="64111" e_stop="64196"/>
          <exon e_start="64304" e_stop="64436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAGGTAATAGATGCAATGTATCTCCTTTTTGCTAATAAATGATGTTTGTGTTGTAAATCGGAGCGAGGATTTGAAGCTTATGAGTTTGGGATTTTAGGGGGGGAGTTGGAGTGGTTAGTTGCTAGTTGAGACTAAGTTGAGCTTAGGGGTGAAGCTAGATAGGGTCGAGAGGTTCATCTAAATACCCTTCGTCGAAAAATTACACTATTTATACATGGTTGATTTTTTTTATATGTATATATATAGTAGACGTTGAACTTTCTTTCGGCTTCTTTGTGTGTTTATTTATTCATATTTCGAACCTATTTCAGTGAAAATTCTGGCTCCGCCATTGGTTGAGATGTTTAGATGTGCACTCTCAAAGTTATAGTGCTTTATGTGTGAGTTGAGGACAAGTTTGAGTGTGTGTTTACGTATTATGACTTCTTTACATATTGAATGTATTCTTAAAACAAATATAGGATTTGAATCAAAACTAATGTTTTTGGCAAAATCAACATCCTACACTCTACATTCGATCTTGTTACCAAGGGGTGTGAACTAGTGATCAATGAAGTGAGTGGAGAACCGTGAGGTCTTATGCTTAAATTAATACAGAGGCACAAAAAATGCTATGTGGTTTCTTCCTATAGCATTGATAGATAGAGTTACTTGGATATCTATATTAGTGAGGAGCTAACAGGTACCTAGAGGAATAGTCAGGTGCGGGCAAGCTAGCTCAAACACCTCATTTTGTTTTTCGTGAAGTTCGTACTTTGGTACAACTTGAGACATGCCTACAACTTACTGCAATGAGAGGCTGTCTTTGGCCTTTATTCTTCTGGTACAATTCGGAATAAACATATTCGGTACAAACAGTAGAGATGGATATCTGTTACGGGCGTCTCTAGAGTCTTTGCTGACATTCATATTATCTTGAAGTTCTCTGTTTGTCATATCGTCATGGTTCTGATGATTTTTTGGGATATACTTTGCACTACACACTGATGCATGAATCACTTGTTAATCACAGTAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCCGTAAGCTTATGAAATCTCTGTGTATGATAGTTCATCTGAGTTGGGTGTCTAAACCAAGAGCTGTGTTTTACATTACTCTTGTATAAATTTAGGATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAGGTATGATCTTTATCGAAGCAGACAGAACTTTGTTGTTCCTAATTTTCCTTTTATGTTGTCTTCAAGAATAATGCAGAGATCGACCTGCAAATGCCTTTTCTTTTCAGGTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAAC</genome_strand>
        <mrna_strand>AAACTATGAAATCAACAACAAATTTTCATCAATTTGTTCATGGAAATCGAGTTTCTCGTCTTTGGAATACGTTAAATTCGATTCGAAGAATGAGAATTTTAAAGCTTATTATTACAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTTTGGAATGCTCTTACTGATTATGAAAGGCTCGCTGATTTTGTCCCAAATCTTGTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAGAATTCCTTGTCCACATCCTGGACGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCACTCTATTGGCACATAGAAGCTCGTGTTGTATTGGATCTCCAAGAATTCATCAAATCG............................................................................................AATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCTGTGAGAGTTGGAACAAG...........................................................................................................GTCTTCAACAGCTATACTAAGTTATGAAGTTAGTGTCATACCAAGGTTCAACTTTCCTGCCATATTCTTGGAGAGGATTATCAGGTCAGACCTCCCNGTAAATCTTCAAGCATTGTCCTGTAGAGCTGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345914" ref_strand="+" ref_description="SGN-E345914 [cTOF-24-H3]">
      <seq>ctgggcgtatttggttggagcaaagaggtatccaacgatctctctattggcacatagaagctcgcgttgtattggatctccaagaattcattaaatccgataatgttcgcgagctccatttctctatggttgacggtgacttcaagaagtttgaaggcaaatggtcagtgagagttggaacaaggtcttcaacggctatactaagttatgaagttagtgtcataccgaggttcaactttccagccattttcttggagaggattatcaggtcagacctccccgtaaatcttcaagcgttgtcctgtagagctgaaaacagttatcaaggttatcagaatgttaccaaagaggaacctggttcttaccttattgatcatgtcatatcccacgaaaataaatcttcgggtgaacacttgaaggaaaagtttgtcaaagccacttttggcccgtcgacaccagttacaagtgacgtgactaataattggggaatatttgggaaaacttgcagacttgacaagccatgtgtggtggatgaagtccatctccgaagatttgatggtctactggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63621" stop="64990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63921" g_stop="64018" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64111" g_stop="64196" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="184" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64304" g_stop="64685" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="566" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.395" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64779" g_stop="64785" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="572" r_length="6" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E345914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63921" e_stop="64018"/>
          <exon e_start="64111" e_stop="64196"/>
          <exon e_start="64304" e_stop="64685"/>
          <exon e_start="64779" e_stop="64785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCCGTAAGCTTATGAAATCTCTGTGTATGATAGTTCATCTGAGTTGGGTGTCTAAACCAAGAGCTGTGTTTTACATTACTCTTGTATAAATTTAGGATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAGGTATGATCTTTATCGAAGCAGACAGAACTTTGTTGTTCCTAATTTTCCTTTTATGTTGTCTTCAAGAATAATGCAGAGATCGACCTGCAAATGCCTTTTCTTTTCAGGTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTGGTAATTAAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGTAGTCCCTTTGATAAATTGATTTTGGAAGTGAAGGAAAATG</genome_strand>
        <mrna_strand>CTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCC............................................................................................GATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAG...........................................................................................................GTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG.............................................................................................G-AAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688097" ref_strand="+" ref_description="SGN-E688097 [T3_tus_85_J22]">
      <seq>cagttatcaaggttatcagaatgttaccaaagaggaacctggttcttaccttattgatcatgtcatatcccacgaaaataaatcttcgggtgaacacttgaaggaaaagtttgtcaaagccacttttggcccgtcgacaccagttacaagtgacgtgactaataattggggaatatttgggaaaacttgcagacttgacaagccatgtgtggtggatgaagtccatctccgaagatttgatggtctactggaaaatggaggtgttcatcgttgcgttgttgctagtattacagtaaaagctccagttcgcgaagtatggaatgttttgactgcttatgaaagtcttcccgagatagttccgaatttagcaatcagtaagatcttatcacgagacaacaacaaagttcgcattcttcaggaaggatgcaagggtcttctatacatggttctccatgcacgtgtcgttctagacttatctgaactcatagaacaagaaattagctttgagcaggtggaaggagatttcgattcttttgaaggaaaatggatcttagagcaattaggcagtcatcatactctgttgaagtatagtgtggagtcaaaaatgcacaagaattcgtttctttccgaagcaattatggaagaggtcatatacgaggaccttccatcaaacttatgtgcaatccgagattacattgaggaacgagagacagagaaacctcttgaaaaatttaaccatgatgaattccgagaggcatcggttagttcatcaatgaaggattcatctgttcattatgataggcaagctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64136" stop="65963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64436" g_stop="64685" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.395" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64779" g_stop="64879" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="351" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64880" i_stop="64959" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64960" g_stop="65026" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="418" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65027" i_stop="65114" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65115" g_stop="65342" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="646" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65343" i_stop="65497" i_length="155">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65498" g_stop="65663" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="812" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E688097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64436" e_stop="64685"/>
          <exon e_start="64779" e_stop="64879"/>
          <exon e_start="64960" e_stop="65026"/>
          <exon e_start="65115" e_stop="65342"/>
          <exon e_start="65498" e_stop="65663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTGGTAATTAAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGTAGTCCCTTTGATAAATTGATTTTGGAAGTGAAGGAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGAGTAAGTTTTCAGGACTTTCTTCTAATATAATTTCTGGCTTTTTCATCATACTAACGGTAATTCATCCCAAACTGTTGCAGGATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAGGTAAATGACAGAGTGAATAATACGTTGTGTATTGCAATGAGATATGTTTCTCGAATATTAGGTGATGCTTCTACTTGTCCATTTCCAGGAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTGAGCAGGTGGAAGGAGATTTCGATTCTTTTGAAGGAAAATGGATCTTAGAGCAATTAGGCAGTCATCATACTCTGTTGAAGTATAGTGTGGAGTCAAAAATGCACAAGAATTCGTTTCTTTCCGAAGCAATTATGGAAGAGGTTTGTATTCATGTCTACTCTAATCATCATCCACTTAACATTGAAATTTATGTTAAGTGGATCTTGAGCCTAACTTGCATCAATAAATCTGCAGAAAATTTTACAAATTAGAATGCCTTATGTGCTTTCTTCTGCTTTTACTCTGTCATTATTAGGTCATATACGAGGACCTTCCATCAAACTTATGTGCAATCCGAGATTACATTGAGGAACGAGAGACAGAGAAACCTCTTGAAAAATTTAACCATGATGAATTCCGAGAGGCATCGGTTAGTTCATCAATGAAGGATTCATCTGTTCATTATGATAGGCAAGCTGGGC</genome_strand>
        <mrna_strand>CAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG.............................................................................................GAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGA................................................................................GATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAG........................................................................................GAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTGAGCAGGTGGAAGGAGATTTCGATTCTTTTGAAGGAAAATGGATCTTAGAGCAATTAGGCAGTCATCATACTCTGTTGAAGTATAGTGTGGAGTCAAAAATGCACAAGAATTCGTTTCTTTCCGAAGCAATTATGGAAGAG...........................................................................................................................................................GTCATATACGAGGACCTTCCATCAAACTTATGTGCAATCCGAGATTACATTGAGGAACGAGAGACAGAGAAACCTCTTGAAAAATTTAACCATGATGAATTCCGAGAGGCATCGGTTAGTTCATCAATGAAGGATTCATCTGTTCATTATGATAGGCAAGCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336627" ref_strand="+" ref_description="SGN-E336627 [cTOE-4-H3]">
      <seq>agttatcaaggttatcagaatgttaccaaagaggaacctggttcttaccttattgatcatgtcatatcccacgaaaataaatcttcgggtgaacacttgaaggaaaagtttgtcaaagccacttttggcccgtcgacaccagttacaagtgacgtgactaataattggggaatatttgggaaaacttgcagacttgacaagccatgtgtggtggatgaagtccatctccgaagatttgatggtctactggaaaatggaggtgttcatcgttgcgttgttgctagtattacagtaaaagctccagttcgcgaagtatggaatgttttgactgcttatgaaagtcttcccgagatagttccgaatttagcaatcagtaagatcttatcacgagacaacaacaaagttcgcattcttcaggaaggatgcaagggtcttctatacatggttctgcatgcacgtgtcgttctagacttatctgaactcatataacaagaaattagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64137" stop="65502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64685" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.395" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64779" g_stop="64879" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="350" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64880" i_stop="64959" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64960" g_stop="65026" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="417" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65027" i_stop="65114" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65115" g_stop="65202" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="505" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E336627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64685"/>
          <exon e_start="64779" e_stop="64879"/>
          <exon e_start="64960" e_stop="65026"/>
          <exon e_start="65115" e_stop="65202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTGGTAATTAAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGTAGTCCCTTTGATAAATTGATTTTGGAAGTGAAGGAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGAGTAAGTTTTCAGGACTTTCTTCTAATATAATTTCTGGCTTTTTCATCATACTAACGGTAATTCATCCCAAACTGTTGCAGGATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAGGTAAATGACAGAGTGAATAATACGTTGTGTATTGCAATGAGATATGTTTCTCGAATATTAGGTGATGCTTCTACTTGTCCATTTCCAGGAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTG</genome_strand>
        <mrna_strand>AGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG.............................................................................................GAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGA................................................................................GATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAG........................................................................................GAAGGATGCAAGGGTCTTCTATACATGGTTCTGCATGCACGTGTCGTTCTAGACTTATCTGAACTCATATAACAAGAAATTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716360" ref_strand="+" ref_description="SGN-E716360 [FB16DD03]">
      <seq>gtcatatacgaggaccttccatcaaacttatgtgcaatccgagattacattgaggaacgagagacagagaaacctcttgaaaaatttaaccatgatgaattccgagaggcatcggttagttcatcaatgaaggattcatctgttcattatgataggcaagctgggcagaattcagatagtagtagtttacattcacctagacaaaggccgaaagttccagggttgcagagggatattgaagttcttaaagctgagctcttggattttatttccgaacatggacaagaaggatttatgcctatgagaaagcaactcagaaaacatggaagagttgatattgaaaaggcgattacacgtatgggaggttttagaagaatttcttcattgatgaatctatctcttgcttacaaacaccgcaaatcaaaaggttattgggatagcttagaaaatttacaagaggagatcagtcgattccagaagaactggggaatggatctatcgtatatgcctagtagaaaatccttcgaacgtgcaggccgatatgatattgctcgtgcgttagaaaaatggggcggccttcatgaagtttcgcgtcttctgtcacttaaggtaaggcatcctaacagacaagcaagctttgccaaagagaagaaagttgaattattagctaatgatgtaaattgtgaaacgacatcgtctaaaccttttgttgcacaagatgcaaagaaatggctcatgaaactcaaggacttggacataaattgggtggaatgagtattgagttttgtttcactttcttctaaaagcatgacaacaactaattgtagcgagtgtatatatatcaatcaagtatgtttcgattccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65198" stop="66982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65498" g_stop="65959" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65960" i_stop="66169" i_length="210">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66170" g_stop="66242" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="535" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66243" i_stop="66350" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66351" g_stop="66680" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="865" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="866" polyA_stop="889"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E716360" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65498" e_stop="65959"/>
          <exon e_start="66170" e_stop="66242"/>
          <exon e_start="66351" e_stop="66680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATATACGAGGACCTTCCATCAAACTTATGTGCAATCCGAGATTACATTGAGGAACGAGAGACAGAGAAACCTCTTGAAAAATTTAACCATGATGAATTCCGAGAGGCATCGGTTAGTTCATCAATGAAGGATTCATCTGTTCATTATGATAGGCAAGCTGGGCAGAATTCAGATAGTAGTAGTTTACATTCACCTAGACAAAGGCCGAAAGTTCCAGGGTTGCAGAGGGATATTGAAGTTCTTAAAGCTGAGCTCTTGGATTTTATTTCCGAACATGGACAAGAAGGATTTATGCCTATGAGAAAGCAACTCAGAAAACATGGAAGAGTTGATATTGAAAAGGCGATTACACGTATGGGAGGTTTTAGAAGAATTTCTTCATTGATGAATCTATCTCTTGCTTACAAACACCGCAAACCAAAAGGTTATTGGGATAGCTTAGAAAATTTACAAGAGGAGGTTAGTTAACAGTTCTTCGTACGTATTATCAACTTCTCATTTCATGCAAAAACTGTGAATACATGCAAAAAAAAACAAAAAACAGCATAAGATACTGATCAATGCAGGAAAAAATCGAGTTTCACTTTTAGGAGATTTAACCAACCTAGTTGCATTTCATATTTTCTTGATTATTTTGATTGAGCTTGGAAATGATCTGCAATTTCTCAGATCAGTCGATTCCAGAAGAACTGGGGAATGGATCTATCGTATATGCCTAGTAGAAAATCCTTCGAACGTGCAGGTATGGAACTAGATTACAATGCAAACGACGTAATGTTTCCCAGGCCTAGAGTTGCTCTAGTTCTTCACCTCACGAATACTTCTGATTTGTACTAGTTATCTCCTACAGGCCGATATGATATTGCTCGTGCGTTAGAAAAATGGGGCGGCCTTCATGAAGTTTCGCGTCTTCTGTCACTTAAGGTAAGGCATCCTAACAGACAAGCAAGCTTTGCCAAAGAGAAGAAAGTTGAATTATTAGCTAATGATGTAAATTGTGAAACGACATCGTCTAAACCTTTTGTTGCACAAGATGCAAAGAAATGGCTCATGAAACTCAAGGACTTGGACATAAATTGGGTGGAATGAGTATTGAGTTTTGTTTCACTTTCTTCTAAAAGCATGACAACAACTAATTGTAGCGAGTGTATATATATCAATCAAGTATGTTTCGATTCCA</genome_strand>
        <mrna_strand>GTCATATACGAGGACCTTCCATCAAACTTATGTGCAATCCGAGATTACATTGAGGAACGAGAGACAGAGAAACCTCTTGAAAAATTTAACCATGATGAATTCCGAGAGGCATCGGTTAGTTCATCAATGAAGGATTCATCTGTTCATTATGATAGGCAAGCTGGGCAGAATTCAGATAGTAGTAGTTTACATTCACCTAGACAAAGGCCGAAAGTTCCAGGGTTGCAGAGGGATATTGAAGTTCTTAAAGCTGAGCTCTTGGATTTTATTTCCGAACATGGACAAGAAGGATTTATGCCTATGAGAAAGCAACTCAGAAAACATGGAAGAGTTGATATTGAAAAGGCGATTACACGTATGGGAGGTTTTAGAAGAATTTCTTCATTGATGAATCTATCTCTTGCTTACAAACACCGCAAATCAAAAGGTTATTGGGATAGCTTAGAAAATTTACAAGAGGAG..................................................................................................................................................................................................................ATCAGTCGATTCCAGAAGAACTGGGGAATGGATCTATCGTATATGCCTAGTAGAAAATCCTTCGAACGTGCAG............................................................................................................GCCGATATGATATTGCTCGTGCGTTAGAAAAATGGGGCGGCCTTCATGAAGTTTCGCGTCTTCTGTCACTTAAGGTAAGGCATCCTAACAGACAAGCAAGCTTTGCCAAAGAGAAGAAAGTTGAATTATTAGCTAATGATGTAAATTGTGAAACGACATCGTCTAAACCTTTTGTTGCACAAGATGCAAAGAAATGGCTCATGAAACTCAAGGACTTGGACATAAATTGGGTGGAATGAGTATTGAGTTTTGTTTCACTTTCTTCTAAAAGCATGACAACAACTAATTGTAGCGAGTGTATATATATCAATCAAGTATGTTTCGATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622487" ref_strand="+" ref_description="SGN-E622487 [72854]">
      <seq>atagcttggaaaatttacaagaggagatcagtcgtttccagaagaactggggaatggatctatcatatatgcctagtagaaagtccttcgaacgtgcaggtcgctatgatattgctcgtgcattagaaaaatggggtggccttcatgaagtttcgcgtcttctatcacttaaggtaaggcatcctaacagacaagcaagccttaccaaagagaagaaagttgaattgttagctaatgatgtaaattgtgaaacggcatcgtctaaaccttttgttgcacaagatgcaaagaaatggctcatgaaactcaaggacttggacataaattgggtggagtgagtattgagttttgtttcactatacttatcttctaaaagcatgacaacatctaattgtatcaagtgtacatataccaatcaaatttgttcaattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65634" stop="66982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65934" g_stop="65959" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65960" i_stop="66169" i_length="210">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66170" g_stop="66242" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="99" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66243" i_stop="66350" i_length="108">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66351" g_stop="66664" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="419" r_length="320" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E622487" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65934" e_stop="65959"/>
          <exon e_start="66170" e_stop="66242"/>
          <exon e_start="66351" e_stop="66664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTTAGAAAATTTACAAGAGGAGGTTAGTTAACAGTTCTTCGTACGTATTATCAACTTCTCATTTCATGCAAAAACTGTGAATACATGCAAAAAAAAACAAAAAACAGCATAAGATACTGATCAATGCAGGAAAAAATCGAGTTTCACTTTTAGGAGATTTAACCAACCTAGTTGCATTTCATATTTTCTTGATTATTTTGATTGAGCTTGGAAATGATCTGCAATTTCTCAGATCAGTCGATTCCAGAAGAACTGGGGAATGGATCTATCGTATATGCCTAGTAGAAAATCCTTCGAACGTGCAGGTATGGAACTAGATTACAATGCAAACGACGTAATGTTTCCCAGGCCTAGAGTTGCTCTAGTTCTTCACCTCACGAATACTTCTGATTTGTACTAGTTATCTCCTACAGGCCGATATGATATTGCTCGTGCGTTAGAAAAATGGGGCGGCCTTCATGAAGTTTCGCGTCTTCTGTCACTTAAGGTAAGGCATCCTAACAGACAAGCAAGCTTTGCCAAAGAGAAGAAAGTTGAATTATTAGCTAATGATGTAAATTGTGAAACGACATCGTCTAAACCTTTTGTTGCACAAGATGCAAAGAAATGGCTCATGAAACTCAAGGACTTGGACATAAATTGGGTGGAATGAGTATTGAGTTTTGTTTCACT-T--T---CTTCTAAAAGCATGACAACAACTAATTGTAGCGAGTGTATATATATCAATCAA</genome_strand>
        <mrna_strand>ATAGCTTGGAAAATTTACAAGAGGAG..................................................................................................................................................................................................................ATCAGTCGTTTCCAGAAGAACTGGGGAATGGATCTATCATATATGCCTAGTAGAAAGTCCTTCGAACGTGCAG............................................................................................................GTCGCTATGATATTGCTCGTGCATTAGAAAAATGGGGTGGCCTTCATGAAGTTTCGCGTCTTCTATCACTTAAGGTAAGGCATCCTAACAGACAAGCAAGCCTTACCAAAGAGAAGAAAGTTGAATTGTTAGCTAATGATGTAAATTGTGAAACGGCATCGTCTAAACCTTTTGTTGCACAAGATGCAAAGAAATGGCTCATGAAACTCAAGGACTTGGACATAAATTGGGTGGAGTGAGTATTGAGTTTTGTTTCACTATACTTATCTTCTAAAAGCATGACAACATCTAATTGTATCAAGTGTACATATACCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687946" ref_strand="+" ref_description="SGN-E687946 [T3_tus_81_L22]">
      <seq>cgttaaggtataagtttcaacgtcgtgttggaatttgggagatttaacttggaatagtttgtaggtcgaaaatggggtcaagacaagagaggcatagatctgatcatgatcttgtgccattagcagcactgataagcagagaattgcggaatgaaaaaatggagaagccaactgtaagatacggatgtgcagctcagtctaagaaaggtgaggattattatctgatgacgacngattgccagagaattcatggcaatccttcatccgccttctctgtgtttgcgatctttgatggacataatggaacagcagccgcagtgtactcaagggatcatctactaaatcatgttttgggtgccattccttgtggactggggagggatgagtggcttcaagctttgcctcgtgcactagttgtagggtttgtgaaaactgacaaggagtttcagaagaaaggactaacatctggaactacagctacatttgtgattgttgatagatggaccgtgacagttgcgtctgttggagattcacgctgcattttggatactcagggtggtgctgtttcagaattaactgtagatcacaggcttgaagaaaatgcagaggaaagggagcgtgtcacagcaagtggaggcgaagtaggaagactttgtatttttggtggtactgagattggtcctcttcgctgttggccaggaggtttatgcctttcaagatcaatcggagatatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73855" stop="71750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73559" g_stop="73276" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73275" i_stop="72747" i_length="529">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72746" g_stop="72575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="456" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72574" i_stop="72479" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72478" g_stop="72325" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="610" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72324" i_stop="72249" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72248" g_stop="72185" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="674" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72184" i_stop="72114" i_length="71">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72113" g_stop="72050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="738" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E687946" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73559" e_stop="73276"/>
          <exon e_start="72746" e_stop="72575"/>
          <exon e_start="72478" e_stop="72325"/>
          <exon e_start="72248" e_stop="72185"/>
          <exon e_start="72113" e_stop="72050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCGGTATGTATTTCTCCATCTTTTTCCCCATCAAACTCCATCTTTTACCACATTAAGTGGGGTCGATGTGAATTTTTGTATCAATTTCACTTAGTTTCAGGTTTATTGCACCCTGATACATTTATCCATTTCTCCATCTTCTACTAGACAAACTTGTCGTCTTAATCAATCGATTACATGTAAAATTTCCAGTCTTTCTTGCATTGGTTCCATACACCTATTAATCCAGTTTGATGTCACCCATTCTATCTATAGGCCATTTAAAATCATTATTTGGATTTATTCAGTAGAATTGTTTTTTAAAATTGGACTAGATACTGAAGGTTGACGGTCCTGTCACTGTATTTGCTTTGTATGTTCCATAGTCTTTCCATTTTATTCAAGGTTGTTAAGTATTGATATGGTTCAATATTACTTTTGGGACTGAAATTGTGTGCTGGTCGAATTTTGTTTGAGGTTCAGGTAATATGATGGTCCTTGCAGCTGGATTCTTCAGTTCATTAATTTTCCATGTAATTCTTCTTTCCGTCAGATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAGGCATGAAATTTGTGCTGCATTTCACTTTATAGCTATTTTATTTTGATTTCATGGTTCAATAGTGCTAATGTATATAACTTTCATTTGTCACTGCAGGACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGAGTAAGTGTCCATCTTCTAAATCATTCCATCTGGTGTGTTGATCAGAAAATGTTCATCATCTCTTAATTAATTGCAGAAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTGTATTTTTGGTGGTACTGAGGTGTGTTGTAAATTTGCATCTCCGATATCATATCACGGATGTGATAGAAAACTTCCATTTTGCATCTGCAGATTGGTCCTCTTCGCTGTTGGCCAGGAGGTTTATGCCTTTCAAGATCAATCGGAGATATGGATG</genome_strand>
        <mrna_strand>CGTTAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACNGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAG................................................................................................GACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGA............................................................................AAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTGTATTTTTGGTGGTACTGAG.......................................................................ATTGGTCCTCTTCGCTGTTGGCCAGGAGGTTTATGCCTTTCAAGATCAATCGGAGATATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328265" ref_strand="+" ref_description="SGN-E328265 [cTOC-21-N21]">
      <seq>caaggtataagtttcaacgtcgtgttggaatttgggagatttaacttggaatagtttgtaggtcgaaaatggggtcaagacaagagaggcatagatctgatcatgatcttgtgccattagcagcactgataagcagagaattgcggaatgaaaaaatggagaagccaactgtaagatacggatgtgcagctcagtctaagaaaggtgaggattattatctgatgacgacagattgccagagaattcatggcaatccttcatccgccttctctgtgtttgcgatctttgatggacataatggaacagcagccgcagtgtactcaagggatcatctactaaatcatgttttgggtgccattccttgtggactggggagggatgagtggcttcaagctttgcctcgtgcactagttgtagggtttgtgaaaactgacaaggagtttcagaagaaaggactaacatctggaactacagctacatttgtgattgttgatagatggaccgtgacagttgcgtctgttggagattcacgctgcattttggatactcagggtggtgctgtttcagaattaactgtagatcacaggcttgaagaaaatgcagaggaaagggagcgtgtcacagcaagtggaggcgaagtaggaagactttgtattttttggtggtactgagattggtcctcttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73856" stop="71798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73556" g_stop="73276" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73275" i_stop="72747" i_length="529">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72746" g_stop="72575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="453" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72574" i_stop="72479" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72478" g_stop="72325" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="607" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72324" i_stop="72249" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72248" g_stop="72185" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="672" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72184" i_stop="72114" i_length="71">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72113" g_stop="72098" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="688" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E328265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73556" e_stop="73276"/>
          <exon e_start="72746" e_stop="72575"/>
          <exon e_start="72478" e_stop="72325"/>
          <exon e_start="72248" e_stop="72185"/>
          <exon e_start="72113" e_stop="72098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCGGTATGTATTTCTCCATCTTTTTCCCCATCAAACTCCATCTTTTACCACATTAAGTGGGGTCGATGTGAATTTTTGTATCAATTTCACTTAGTTTCAGGTTTATTGCACCCTGATACATTTATCCATTTCTCCATCTTCTACTAGACAAACTTGTCGTCTTAATCAATCGATTACATGTAAAATTTCCAGTCTTTCTTGCATTGGTTCCATACACCTATTAATCCAGTTTGATGTCACCCATTCTATCTATAGGCCATTTAAAATCATTATTTGGATTTATTCAGTAGAATTGTTTTTTAAAATTGGACTAGATACTGAAGGTTGACGGTCCTGTCACTGTATTTGCTTTGTATGTTCCATAGTCTTTCCATTTTATTCAAGGTTGTTAAGTATTGATATGGTTCAATATTACTTTTGGGACTGAAATTGTGTGCTGGTCGAATTTTGTTTGAGGTTCAGGTAATATGATGGTCCTTGCAGCTGGATTCTTCAGTTCATTAATTTTCCATGTAATTCTTCTTTCCGTCAGATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAGGCATGAAATTTGTGCTGCATTTCACTTTATAGCTATTTTATTTTGATTTCATGGTTCAATAGTGCTAATGTATATAACTTTCATTTGTCACTGCAGGACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGAGTAAGTGTCCATCTTCTAAATCATTCCATCTGGTGTGTTGATCAGAAAATGTTCATCATCTCTTAATTAATTGCAGAAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTGTA-TTTTTGGTGGTACTGAGGTGTGTTGTAAATTTGCATCTCCGATATCATATCACGGATGTGATAGAAAACTTCCATTTTGCATCTGCAGATTGGTCCTCTTCGCT</genome_strand>
        <mrna_strand>CAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAG................................................................................................GACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGA............................................................................AAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTGTATTTTTTGGTGGTACTGAG.......................................................................ATTGGTCCTCTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326209" ref_strand="+" ref_description="SGN-E326209 [cTOC-16-L11]">
      <seq>caaggtataagtttcaacgtcgtgttggaatttgggagatttaacttggaatagtttgtaggtcgaaaatggggtcaagacaagagaggcatagatctgatcatgatcttgtgccattagcagcactgataagcagagaattgcggaatgaaaaaatggagaagccaactgtaagatacggatgtgcagctcagtctaagaaaggtgaggattattatctgatgacgacagattgccagagaattcatggcaatccttcatccgccttctctgtgtttgcgatctttgatggacataatggaacagcagccgcagtgtactcaagggatcatctactaaatcatgttttgggtgccattccttgtggactggggagggatgagtggcttcaagctttgcctcgtgcactagttgtagggtttgtgaaaactgacaaggagtttcagaagaaaggactaacatctggaactacagctacatttgtgattgttgatagatggaccgtgacagttgcgtctgttggagattcacgctgcattttggatactcagggtggtgctgtttcagaattaactgtagatcacaggcttgaagaaatgcagaggaaagggagcgtgtcacagcaagtggaggcgaagtaggaagactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73856" stop="71904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73556" g_stop="73276" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73275" i_stop="72747" i_length="529">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72746" g_stop="72575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="453" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72574" i_stop="72479" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72478" g_stop="72325" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="606" r_length="153" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72324" i_stop="72249" i_length="76">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72248" g_stop="72204" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="651" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E326209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73556" e_stop="73276"/>
          <exon e_start="72746" e_stop="72575"/>
          <exon e_start="72478" e_stop="72325"/>
          <exon e_start="72248" e_stop="72204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCGGTATGTATTTCTCCATCTTTTTCCCCATCAAACTCCATCTTTTACCACATTAAGTGGGGTCGATGTGAATTTTTGTATCAATTTCACTTAGTTTCAGGTTTATTGCACCCTGATACATTTATCCATTTCTCCATCTTCTACTAGACAAACTTGTCGTCTTAATCAATCGATTACATGTAAAATTTCCAGTCTTTCTTGCATTGGTTCCATACACCTATTAATCCAGTTTGATGTCACCCATTCTATCTATAGGCCATTTAAAATCATTATTTGGATTTATTCAGTAGAATTGTTTTTTAAAATTGGACTAGATACTGAAGGTTGACGGTCCTGTCACTGTATTTGCTTTGTATGTTCCATAGTCTTTCCATTTTATTCAAGGTTGTTAAGTATTGATATGGTTCAATATTACTTTTGGGACTGAAATTGTGTGCTGGTCGAATTTTGTTTGAGGTTCAGGTAATATGATGGTCCTTGCAGCTGGATTCTTCAGTTCATTAATTTTCCATGTAATTCTTCTTTCCGTCAGATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAGGCATGAAATTTGTGCTGCATTTCACTTTATAGCTATTTTATTTTGATTTCATGGTTCAATAGTGCTAATGTATATAACTTTCATTTGTCACTGCAGGACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGAGTAAGTGTCCATCTTCTAAATCATTCCATCTGGTGTGTTGATCAGAAAATGTTCATCATCTCTTAATTAATTGCAGAAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTG</genome_strand>
        <mrna_strand>CAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAG................................................................................................GACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAG-AAATGCAGAGGA............................................................................AAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208759" ref_strand="+" ref_description="SGN-E208759 [cLEC-51-E12]">
      <seq>atgtgaatgattggtttcttgcaatgtttgatgatgatgaaggctttgagtctgcattacaagcgtgtaaagatcatgtaataataccagtagaactgcttggaaatgaggggagtaatcgagttattgactatcaagtcttactgagaagggggtttagattgagctggatatcaagtgactgcagtgagtgtacagaaagtgggggacgttgcggatttgatgtcatcaattatcaattcaaatgtttctgcactgacaggcctcatgcttcgagttgccaacctaccaaagcaaaaagaaacttgggactgattctaggcacagttttctcttgcatcggagttgtgattttgctcttctgcttgagaaaaaagattttctggcacaagaaatctcacgttttgggaatctatagctgaggatcacagaaatattgaagcatttctgaagaaccttctgggtcatatgctccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="79810" stop="81914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80110" g_stop="80400" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80401" i_stop="81262" i_length="862">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81263" g_stop="81298" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="327" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81299" i_stop="81464" i_length="166">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81465" g_stop="81614" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="480" r_length="153" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E208759" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80110" e_stop="80400"/>
          <exon e_start="81263" e_stop="81298"/>
          <exon e_start="81465" e_stop="81614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGAATGATTGGTTTCTTGCAATGTTTGATGATGATGAAGGCTTTGAGTCTGCATTACAAGCGTGTAAAGATCATGTAATAATACCAGTAGAACTGCTTGGAAATGAGGGGAGTAATCGAGTTATTGACTATCAAGTCTTACTGAGAAGGGGGTTTAGATTGAGCTGGATATCAAGTGACTGCAGTGAGTGTACAGAAAGTGGGGGACGTTGCGGATTTGATGTCATCAATTATCAATTCAAATGTTTCTGCACTGACAGGCCTCATGCTTCGAGTTGCCAACCTACCAGTAAGCCCCTATCTAGCAGTTAATTTTCGAGTATAATTATGAAGAACCTTATCTTATGATTAGGTGCCGTGCTTCAGGTTCTTTTCTTGTGATTACCAAGTGCACAAAAAAGTATCGTTTGATGATCTAGGCATCAAGATATAGCTGCATTAAGGATTTGGATTATGTGTTAACCGCAAAATTTTGAGCAGCCAACTTTTTTTTTTTAAAAGAAAAGATAAATAAAAAAATTGGTGGTAGGCGAAGGGGAAATGGGAGAGGGTATTAAAAGATGAGGAATCGAACACCAACAAGGTGAAACTTCAGAGTTCGTTGTCGAAGAATTGGAACCATAAGTTATCTTTTCCCACCTCGTGTTCTATTTTAAGTCAACAACATATTACTTTGTACATTCAAATAACAGTAAGCGGATTGATAGTTATTTCAAAGTTATAAGAACTACTTGAGTCGTGATGCCTTTAGCATATAGTGTCATAAACCACGAACTGATCAAAGACGTAGTATTCTAGCTAGCAATCTTCCTGCAAATTCATCATTCACCTTCAGAACAAAATTCTTCTGATTTGTTTGATCTATTGACTCCTAGTTTCACATTAGATTGGGAATTGTCTTTAAACTATTCTAACTATCTCATAAAGAAGGCGATACCAGAGTGACATCGAAAACAACTTTTTTTGCTGCAAAGGTATTGGATATAAGAAGTTTGTCAGTTGCTTGTGTATGTCTGGTTTCATTTTTGGTATGGATTTAGATGTGTGTTGGTTGGTTCATTCCAAGATGTTTAATAATTCAACGTGAACGGAAGTGAATTGCTTTCACTCTTATTGTGACTTATTACTCTTTCATTTCTGTGTATTTGCAGAAGCAAAAAGAAACTTGGGACTGATTCTAGGCACAGGTACATGTCTAATATCTGTAATTAGACTTGCACAAAAATCTCGTAATGCCTTGATCTAACTTAGAATTATTTTAATATATGTTTTGCAAATGTTGTAATCGCTGTGCTGCCTCAAAACCAGGCTCTTTCCGGTGCATGACTTTCCATTTTCCCCCCACATTTGCAGTTTTCTCTTGCATCGGAGTTGTGATTTTGCTCTTCTGCTTGAGAAAAAAGATTTTCTGGCAC-AGAAATCTCAGGTTTTGGGAATCTATAGCTGAGGATCACAGAAATATTGAAGCATTTCTGAAGAA-C-TCTGGGTCATATGCTCCAAAAA</genome_strand>
        <mrna_strand>ATGTGAATGATTGGTTTCTTGCAATGTTTGATGATGATGAAGGCTTTGAGTCTGCATTACAAGCGTGTAAAGATCATGTAATAATACCAGTAGAACTGCTTGGAAATGAGGGGAGTAATCGAGTTATTGACTATCAAGTCTTACTGAGAAGGGGGTTTAGATTGAGCTGGATATCAAGTGACTGCAGTGAGTGTACAGAAAGTGGGGGACGTTGCGGATTTGATGTCATCAATTATCAATTCAAATGTTTCTGCACTGACAGGCCTCATGCTTCGAGTTGCCAACCTACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAAAAGAAACTTGGGACTGATTCTAGGCACAG......................................................................................................................................................................TTTTCTCTTGCATCGGAGTTGTGATTTTGCTCTTCTGCTTGAGAAAAAAGATTTTCTGGCACAAGAAATCTCACGTTTTGGGAATCTATAGCTGAGGATCACAGAAATATTGAAGCATTTCTGAAGAACCTTCTGGGTCATATGCTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200832" ref_strand="+" ref_description="SGN-E200832 [cLEC-5-C5]">
      <seq>gattttgctcttctgcttgagaaaaaagattttctggcacagaaatctcaggttttgggaatctatagctgaggatcacagaaatattgaagcatttctgaagaactctgggtcatatgctccaaaaagatacagctatacagacatcaaaggaatcaccagttacttcaaaaacaaactaggccaaggaggatttggtaatgtatacagaggaagtttgcctaacgggagtcaagtggcagtgaaggtcctgaatgaactaaaaggtaatagtgaagatttcattaatgaggtagcaagtattagcaggacatcacatgttaacattgtgagccttgtgggattttgttttgagtgtcacaaaagagctcttatttatgaattcatgccaaatggatctcttgaaaagtttatctatgaggaaagatctgacggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="81187" stop="82224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81487" g_stop="81924" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E200832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81487" e_stop="81924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCTCTTCTGCTTGAGAAAAAAGATTTTCTGGCACAGAAATCTCAGGTTTTGGGAATCTATAGCTGAGGATCACAGAAATATTGAAGCATTTCTGAAGAACTCTGGGTCATATGCTCCAAAAAGATACAGCTATACAGACATCAAAGGAATCACCAGTTACTTCAAAAACAAACTAGGCCAAGGAGGATTTGGTAATGTATACAGAGGAAGTTTGCCTAACGGGAGTCAAGTGGCAGTGAAGGTCCTGAATGAACTAAAAGGTAATAGTGAAGATTTCATTAATGAGGTAGCAAGTATTAGCAGGACATCACATGTTAACATTGTGAGCCTTGTGGGATTTTGTTTTGAGTGTCACAAAAGAGCTCTTATTTATGAATTCATGCCAAATGGATCTCTTGAAAAGTTTATCTATGAGGAAAGATCTGACGGAGT</genome_strand>
        <mrna_strand>GATTTTGCTCTTCTGCTTGAGAAAAAAGATTTTCTGGCACAGAAATCTCAGGTTTTGGGAATCTATAGCTGAGGATCACAGAAATATTGAAGCATTTCTGAAGAACTCTGGGTCATATGCTCCAAAAAGATACAGCTATACAGACATCAAAGGAATCACCAGTTACTTCAAAAACAAACTAGGCCAAGGAGGATTTGGTAATGTATACAGAGGAAGTTTGCCTAACGGGAGTCAAGTGGCAGTGAAGGTCCTGAATGAACTAAAAGGTAATAGTGAAGATTTCATTAATGAGGTAGCAAGTATTAGCAGGACATCACATGTTAACATTGTGAGCCTTGTGGGATTTTGTTTTGAGTGTCACAAAAGAGCTCTTATTTATGAATTCATGCCAAATGGATCTCTTGAAAAGTTTATCTATGAGGAAAGATCTGACGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260118" ref_strand="+" ref_description="SGN-E260118 [cLEG-52-G9]">
      <seq>gataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcaagtttatggtgtatacagactgatccggcaaatcgaccatcgatgagcaaggttgtggaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttacctatattctccctcaagatcagaggtagattcatcaacaatagaactggcaacaacaacaacaacaacaacatatccagtatagtcccgcaagtggggtgtgagaagagtagggtgtatgcaaaacttgcatcacctttgtggagtagagaggttgttcctgatagaccctaagctcaagaaaatcgttttgcagaaaatggtttgaaagaaatgcaagacagtttagttaactaagtacttgttggtacttaactagcaaagagaagaaaggtttagttcaagtgttcaaccatagctttcaatttcattttgtgattttcattagttgtcaaggatgtatattactacatggaagttaaatattaaaaagacttgaattccctattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82045" stop="83189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82345" g_stop="82886" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="568"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E260118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82345" e_stop="82886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCAAGTTTATGGTGTATACAGACTGATCCGGCAAATCGACCATCGATGAGCAAGGTTGTGGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTACCTATATTCTCCCTCAAGATCAGAGGTAGATTCATCAACAATAGAACTGGCAACAACAACAACAACAACAACATATCCAGTATAGTCCCGCAAGTGGGGTGTGAGAAGAGTAGGGTGTATGCAAAACTTGCATCACCTTTGTGGAGTAGAGAGGTTGTTCCTGATAGACCCTAAGCTCAAGAAAATCGTTTTGCAGAAAATGGTTTGAAAGAAATGCAAGACAGTTTAGTTAACTAAGTACTTGTTGGTACTTAACTAGCAAAGAGAAGAAAGGTTTAGTTCAAGTGTTCAACCATAGCTTTCAATTTCATTTTGTGATTTTCATTAGTTGTCAAGGATGTATATTACTACATGGAAGTTAAATATTAAAAAGACTTGAATTCCCT</genome_strand>
        <mrna_strand>GATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCAAGTTTATGGTGTATACAGACTGATCCGGCAAATCGACCATCGATGAGCAAGGTTGTGGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTACCTATATTCTCCCTCAAGATCAGAGGTAGATTCATCAACAATAGAACTGGCAACAACAACAACAACAACAACATATCCAGTATAGTCCCGCAAGTGGGGTGTGAGAAGAGTAGGGTGTATGCAAAACTTGCATCACCTTTGTGGAGTAGAGAGGTTGTTCCTGATAGACCCTAAGCTCAAGAAAATCGTTTTGCAGAAAATGGTTTGAAAGAAATGCAAGACAGTTTAGTTAACTAAGTACTTGTTGGTACTTAACTAGCAAAGAGAAGAAAGGTTTAGTTCAAGTGTTCAACCATAGCTTTCAATTTCATTTTGTGATTTTCATTAGTTGTCAAGGATGTATATTACTACATGGAAGTTAAATATTAAAAAGACTTGAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379696" ref_strand="+" ref_description="SGN-E379696 [TUS-1-K24]">
      <seq>tttaatatggctatcacttcatatgtaagctatctcctatcacttctcctgatcttagttcaggcaaagggcagaaatgattcaacttgtccaaagtcattttcatgtggaaattttactgacctaagctttcctttctctctttctacacaacctgaatgtggaataatgttcttatctggttgtgatgctaaaccatatccgagaatccgactgcttcctgagggatattagtactatgctttagagatgcataatttatcagtttggcttggggacacgaagcttcaaacaacgttgacgcaacacaagtgccaggcttttaacaaaaatttctcccttccatactcttcttttatgtctttccatatgattaatataataagcttctacaaatgcatcagtaccagtaataatacccgtaacattacgcagaagaagaacgatcattttgctggttataatatgtacaccggctgtgaaggctttagcatatactacaacctttcccgacatgatgatgaatacatagcagcagacaatcttcctaccaactgttcacttatcagattgccaattcaggcaactcatggtgatttgttcgacatgttaggtcctgcaattctagtagaatggaaattatctgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83530" stop="84780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83830" g_stop="84480" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E379696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83830" e_stop="84480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATGGCTATCACTTCATATGTAAGCTATCTCCTATCACTTCTCCTGATCTTAGTTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATGTACACCGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGCAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACATGTTAGGTCCTGCAATTCTAGTAGAATGGAAATTATCTGAGGAA</genome_strand>
        <mrna_strand>TTTAATATGGCTATCACTTCATATGTAAGCTATCTCCTATCACTTCTCCTGATCTTAGTTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATGTACACCGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGCAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACATGTTAGGTCCTGCAATTCTAGTAGAATGGAAATTATCTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202120" ref_strand="+" ref_description="SGN-E202120 [cLEC-7-M23]">
      <seq>tttaatatggctatcacttcatatgtaagctatctcctatcacttctcctgatcttagttcaggcaaagggcagaaatgattcaacttgtccaaagtcattttcatgtggaaattttactgacctaagctttcctttctctctttctacacaacctgaatgtggaataatgttcttatctggttgtgatgctaaaccatatccgagaatccgactgcttcctgagggatattagtactatgctttagagatgcataatttatcagtttggcttggggacacgaagcttcaaacaacgttgacgcaacacaagtgccaggcttttaacaaaaatttctcccttccatactcttcttttatgtctttccatatgattaatataataagcttctacaaatgcatcagtaccagtaataatacccgtaacattacgcagaagaagaacgatcattttgctggttataatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83530" stop="84597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83830" g_stop="84297" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E202120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83830" e_stop="84297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATGGCTATCACTTCATATGTAAGCTATCTCCTATCACTTCTCCTGATCTTAGTTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATG</genome_strand>
        <mrna_strand>TTTAATATGGCTATCACTTCATATGTAAGCTATCTCCTATCACTTCTCCTGATCTTAGTTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379546" ref_strand="+" ref_description="SGN-E379546 [TUS-1-K24](-)">
      <seq>gaaaaaagatccgacaatgttcgccaattaagttggccaatattatacaaaatcgcactaggcatgcttcgaggattggagtacttgcaccgtggttgtaacactcggattttgcattttgatataaagcctcataatatcttacttgatgaggatttttgtccaaagatctctgactttggccttgccaaactatgcataaaaaaggagagtgtcgtgtcaatgttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggtgtctctcacaagtctgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcactagtgaaatctactttccacattggctttatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatcgatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatctattttctccctcaagatcagaggtaaattcattagtagtagaactggcctagcctttatttgctgatatgtaagctatcatttgtattattgtataacctcactttgtatgaaattcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85379" stop="86709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85679" g_stop="86409" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E379546" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85679" e_stop="86409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATTGCTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCT</genome_strand>
        <mrna_strand>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATGCTTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAACCTCACTTTG-TATGAAA-TTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393832" ref_strand="+" ref_description="SGN-E393832 [TUS-14-O21](-)">
      <seq>ttacttgatgaggatttttgtccaaagatctttgactttggccttgccaaactatgcataaaaaaggagagtgtcgtgtcaatgttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggcccctctcacaagtttgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcactagtgaaatttactttccacattggctttatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatcgatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatctattttctccctcaagatcagaggtaaattcattagtagtagaactggcctagcctttatttgctgatatgtaagctatcatttgtattattgtatagcctcactttgttatgaaatttcagctaaatagttgttgttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85520" stop="86730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85820" g_stop="86425" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="619"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E393832" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85820" e_stop="86425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</genome_strand>
        <mrna_strand>TTACTTGATGAGGATTTTTGTCCAAAGATCTTTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGCCCCTCTCACAAGTTTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATTTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395302" ref_strand="+" ref_description="SGN-E395302 [TUS-14-P21](-)">
      <seq>tgaggatttttgtccaaagatttttgactttggccttgccaaactatgcataaaaaaaggagagtgttcgtgtcaatgtttaggtccacgaggtactataggctatattgctccggaaattgtttgcagaaacttgggaggtgtctctcacaagtctgacgtctatagctatggaatgatggtcctagagatggttggaggaagaaaaaatgttgatgtaggagttgatcgcaatagtgaaatgtactttccacattggaataatcaacgacttgaactagaagaagagcttcaactaatcgggataatgaatgaagaggagaacgaatgtgcaagaaagatggtgatagcgagtttatggtgcatacagactgatccctcaaatcggccatggatgagcaaggttgttgaaatgttagaagggaaactagactctttgcaaatgcctcccaagccttatgtattttctccctcaagatcagaggaaaattcattagtagttgaactggcctagcctttattcgctgatatgtaagctatcatttgtatttttaaagggcctcaatttgttatgaaatatcaggtaactatttaaaggtgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85528" stop="86683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85828" g_stop="86414" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="614"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E395302" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85828" e_stop="86414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCAT-AAAAAAGGAGAGTG-TCGTGTCAATG-TTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATA</genome_strand>
        <mrna_strand>TGAGGATTTTTGTCCAAAGATTTTTGACTTTGGCCTTGCCAAACTATGCATAAAAAAAGGAGAGTGTTCGTGTCAATGTTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCAATAGTGAAATGTACTTTCCACATTGGAATAATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATGGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATGTATTTTCTCCCTCAAGATCAGAGGAAAATTCATTAGTAGTTGAACTGGCCTAGCCTTTATTCGCTGATATGTAAGCTATCATTTGTATTTTTAAAGGGCCTCAATTTGTTATGAAATATCAGGTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547832" ref_strand="+" ref_description="SGN-E547832 [TUS-71-O17](-)">
      <seq>tgcgaggttttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatccccaacatatattggttataaaaatttatatgccatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtgggggtgggggtcagggtgaggtgtgcaaggttgggggtggggatgggggtgggggtggggtatttcctcatgtgcatatgcaagtttgcttgaaataaagatagtaacaatggcaaataaaaagatactagtaatatttttgttaatagccattatttcttttaattccctctatactttcctatttttttctatgagaaaagttaaaaagagggaataaaaagaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88001" stop="86706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87705" g_stop="87019" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="721"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E547832" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87705" e_stop="87019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGTTCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTT----G-GGGG-TGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAATTAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</genome_strand>
        <mrna_strand>TGCGAGGTTTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCCCCAACATATATTGGTTATAAAAATTTATATGCCATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGTGGGGGTCAGGGTGAGGTGTGCAAGGTTGGGGGTGGGGATGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAAATAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549539" ref_strand="+" ref_description="SGN-E549539 [TUS-71-F15]">
      <seq>cttttctcatagaaaaaaataggaaagtatagagggaattaaaagaaataatggctattaacaaaaatattactagtatctttttatttgccattgttactatctttatttcaagcaaacttgcatatgcacatgaggaaataccccacccccacccccatccccacccccaaccttgcacacctcaccctgacccccacccccacccccacccccaagttcatgaggggccagtatttgaattttcaggaagaaaatttaaaatggaacaaggacatgaacaatgttatgaaaattgttataaaggtatatttggtggtgaaggaagtccattatatgctgaacaagaatgctatgatatgtgccataaccatggtaaatttgcattcccaacttttagtcctcctcctcctcaactataagtttaatttcgatttcaacgtatcgagaataacctaagctatgctcgctcaatcaaatgttattcgagctatttttgaggagttaaaaagaggttatattttgatcgcgattatatggaggcacatttttttttttgatttcatgtcatataaatttttataaccaatatatgttggtgatcatatgtaatgtaacatttttatgaaatacattttcacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86739" stop="87984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87039" g_stop="87684" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E549539" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87039" e_stop="87684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCA----C--CCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGG</genome_strand>
        <mrna_strand>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTATTTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCATCCCCACCCCCAACCTTGCACACCTCACCCTGACCCCCACCCCCACCCCCACCCCCAAGTTCATGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCGATTTCAACGTATCGAGAATAACCTAAGCTATGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACA----T-TTTTT-TTTTTGATTTCATGTCATATAAATTTTTATAACCAATATATGTTGGTGATCATATGTA-ATGTAACATTTTTATGAAATACATTTTCACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361088" ref_strand="+" ref_description="SGN-E361088 [cLPP-13-G24]">
      <seq>ttttctcatagaaaaaaataggaaagtatagagggaattaaaagaaataatggctattaacaaaaatattactagtatctttttatttgccattgttactatctttatttcaagcaaacttgcatatgcacatgaggaaataccccacccccacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86740" stop="87496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87040" g_stop="87196" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E361088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87040" e_stop="87196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCC</genome_strand>
        <mrna_strand>TTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTATTTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547833" ref_strand="+" ref_description="SGN-E547833 [TUS-71-O17]">
      <seq>ttttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatcaccaacatatattggttataaaaatttatatgacatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtggggggtgggggtcagggtgaggtgtgcaaggttgggggtggggatgggggtgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87992" stop="86880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87698" g_stop="87183" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E547833" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87698" e_stop="87183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGT-GGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTTGGGGGTGGGGGTGGGGGTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCACCAACATATATTGGTTATAAAAATTTATATGACATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGGTGGGGGTCAGGGTGAGGTGTGCAAGGTTGGGGGTGGGGATGGGGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547458" ref_strand="+" ref_description="SGN-E547458 [TUS-71-F15](-)">
      <seq>cccccatccccacccccaaccttgcacacctcaccntgaccnccaccccccacccccaccccaagttcatgaggggccagtatttgaattttcaggaagaaaatttaaaatggaacaaggacatgaacaatgttatgaaaattgttataaaggtatatttggtggtgaaggaagtccattatatgctgaacaagaatgctatgatatgtgccataaccatggtaaatttgcattcccaacttttagtcctcctcctcctcaactataagtttaatttcgatttcaacgtatcgagaataacctaagctatgctcgctcaatcaaatgttattcgagctatttttgaggagttaaaaagaggttatattttgatcgcgattatatggaggcacatttttttttttgatttcatgtcatataaatttttataaccaatatatgttggtgatcatatgtaatgtaacatttttatgaaatacattttcacttggcatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86887" stop="87999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87187" g_stop="87689" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="530"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E547458" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87187" e_stop="87689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGA</genome_strand>
        <mrna_strand>CCCCCATCCCCACCCCCAACCTTGCACACCTCACCNTGACCNCCACCCCCCACCCCCACCCCAAGTTCATGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCGATTTCAACGTATCGAGAATAACCTAAGCTATGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACA----T-TTTTT-TTTTTGATTTCATGTCATATAAATTTTTATAACCAATATATGTTGGTGATCATATGTA-ATGTAACATTTTTATGAAATACATTTTCACTTGGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364436" ref_strand="+" ref_description="SGN-E364436 [cLPP-20-J16]">
      <seq>tttttttttcatgccaagtgaaaatgtatttcataaaaatgttacattacatatgatcaccaacatatattggttataaaaatttatatgacatgaaatcaaaaaaaaaaaaaaatgtgcctccatataatcgcgatcaaaatataacctctttttaactcctcaaaaatagctcgaataacatttgattgagcgagcatagcttaggttattctcgatacgttgaaatcgaaattaaacttatagttgaggaggaggaggactaaaagttgggaatgcaaatttaccatggttatggcacatatcatagcattcttgttcagcatataatggacttccttcaccaccaaatatacctttataacaattttcataacattgttcatgtccttgttccattttaaattttcttcctgaaaattcaaatactggcccctcatgaacttgggggtgggggtgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87992" stop="86931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87697" g_stop="87231" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E364436" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87697" e_stop="87231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGT</genome_strand>
        <mrna_strand>TTTTTTTTTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACAT-TACATATGATCACCAACATATATTGGTTATAAAAATTTATATGACATGAAATCAAAAA-AAAAA-AAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCATAGCTTAGGTTATTCTCGATACGTTGAAATCGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCATGAACTTGGGGGTGGGGGTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279270" ref_strand="-" ref_description="SGN-E279270 [cLEL-4-I18](-)">
      <seq>gcacgaggtttgcttcagctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcacctccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89019" stop="92164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89312" g_stop="89565" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91864" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="434" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E279270" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89312" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGC</genome_strand>
        <mrna_strand>GCACGAGGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCACCTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279260" ref_strand="-" ref_description="SGN-E279260 [cLEL-4-E18](-)">
      <seq>gcacgaggtttgcttcagctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttggaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaatgggaggatataaatgggacaaaaatgaaaaacatttgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89019" stop="92150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89312" g_stop="89565" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="386" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91850" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E279260" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279260" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89312" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTT-GAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGT-AGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCC</genome_strand>
        <mrna_strand>GCACGAGGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATGGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747387" ref_strand="+" ref_description="SGN-E747387 [GI|47104575]">
      <seq>ctcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89030" stop="97366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89330" g_stop="89565" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="366" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="478" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="554" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="643" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="730" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95754" g_stop="95870" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="847" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95977" g_stop="96084" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="955" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96187" g_stop="96240" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1009" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96241" i_stop="96378" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96379" g_stop="96531" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1162" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96765" g_stop="97066" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1464" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1465" polyA_stop="1488"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E747387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1464</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89330" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95870"/>
          <exon e_start="95977" e_stop="96084"/>
          <exon e_start="96187" e_stop="96240"/>
          <exon e_start="96379" e_stop="96531"/>
          <exon e_start="96765" e_stop="97066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGA</genome_strand>
        <mrna_strand>CTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270811" ref_strand="+" ref_description="SGN-E270811 [cLEM-6-M15]">
      <seq>tcacattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89031" stop="94464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89331" g_stop="89565" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="365" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="477" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="553" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94284" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="564" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E270811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89331" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>TCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302870" ref_strand="+" ref_description="SGN-E302870 [cLEW-26-G5]">
      <seq>acattcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89033" stop="94402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89333" g_stop="89565" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="363" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="475" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94102" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="497" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E302870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89333" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGA</genome_strand>
        <mrna_strand>ACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309951" ref_strand="+" ref_description="SGN-E309951 [cTOA-4-A9]">
      <seq>cattcttcatcaatggcggcttcttcttcttctttacaattcactgcaaccccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactatccgctgatccgcttcttcacccagcaaaagctacatcattactcttcttgccggcgatggtattggacctgaagtaatctctgttgccaaaaatgccctccaacttgtctcctccattgaaggattagaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89034" stop="91979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89334" g_stop="89565" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91679" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="342" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E309951" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89334" e_stop="89565"/>
          <exon e_start="91570" e_stop="91679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACT</genome_strand>
        <mrna_strand>CATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACCCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATCCGCTGATCCGCTTCTTCACCCAGCAAAAGCTACATCATTACTCTTCTTGCCGGCGATGGTATTGGACCTGAAGTAATCTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343109" ref_strand="+" ref_description="SGN-E343109 [cTOF-11-P24]">
      <seq>attcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatgggttgttagggaacttatggnaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcacactgnaagtgtatgcagcatattgagatcgaaagattggctcgtattgcatttgaaactgcaaggaagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89035" stop="95289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89335" g_stop="89565" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="361" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="473" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="550" r_length="77" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="640" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="94989" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="685" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E343109" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89335" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="94989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAAT-GGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTG-AAGTGTATGCAGCATA-TGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGA</genome_strand>
        <mrna_strand>ATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGGTTGTTAGGGAACTTATGGNAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTC-ACACTGNAAGTGTATGCAGCATATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGATTGGCTCGTATTGCATTTGAAACTGCAAGGAAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305021" ref_strand="+" ref_description="SGN-E305021 [cLEX-10-G16]">
      <seq>ttcttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89036" stop="94401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89336" g_stop="89565" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="360" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="472" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94101" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="493" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E305021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89336" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTG</genome_strand>
        <mrna_strand>TTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699533" ref_strand="+" ref_description="SGN-E699533 [FA10BG02]">
      <seq>cttcatcaatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagccccagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89038" stop="96080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89338" g_stop="89565" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="358" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="470" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="546" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="635" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="722" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95754" g_stop="95780" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="749" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E699533" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89338" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTT</genome_strand>
        <mrna_strand>CTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCCAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358874" ref_strand="+" ref_description="SGN-E358874 [cLHT-24-G19]">
      <seq>aatggcggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttctgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaactcgtctcctccattgaaggatttgaagttgcattcgaggagatgcctatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatacaaatgggacaaaaatgaaaaacatttgaaacccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89045" stop="94401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89345" g_stop="89565" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="351" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="463" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94101" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="484" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E358874" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89345" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTG</genome_strand>
        <mrna_strand>AATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCTGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATACAAATGGGACAAAAATGAAAAACATTTGAAACCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707862" ref_strand="+" ref_description="SGN-E707862 [FA34AG04]">
      <seq>gctgtcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggagtaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgaatacaggaagtatcgggatgcttccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89049" stop="96367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89348" g_stop="89565" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="348" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="460" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="536" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="625" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="712" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95754" g_stop="95870" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="829" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95977" g_stop="96067" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="920" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E707862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89348" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95870"/>
          <exon e_start="95977" e_stop="96067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTG</genome_strand>
        <mrna_strand>GCTGTCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGTAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGAATACAGGAAGTATCGGGATGCTTCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359436" ref_strand="+" ref_description="SGN-E359436 [cLHT-31-I20]">
      <seq>cggcttcttcttcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttctgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaactcgtcgcctccattgaaggatttgaagttgcattcgaggagatgcctatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatacaaatgggacaaaaatgaaaaacatttgaaacccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89050" stop="94452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89350" g_stop="89565" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.557" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="346" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="458" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94152" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="530" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E359436" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89350" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACT</genome_strand>
        <mrna_strand>CGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCTGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATACAAATGGGACAAAAATGAAAAACATTTGAAACCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487295" ref_strand="+" ref_description="SGN-E487295 [cSTE-25-G21]">
      <seq>ttcttcttcttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccactgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggcttgcaggtctttgctaacttgagaccagccagtgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttattttggcaaaccaagaggattcggcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagattgacagaattgctcgtattgcatttgaaactgcaaggaagcgtagaggaaaactatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89054" stop="95307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89354" g_stop="89565" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="342" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="454" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="619" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="95007" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="682" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E487295" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89354" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGC</genome_strand>
        <mrna_strand>TTCTTCTTCTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCACTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGCTTGCAGGTCTTTGCTAACTTGAGACCAGCCAGTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCGGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGTAGAGGAAAACTATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330375" ref_strand="+" ref_description="SGN-E330375 [cTOD-4-I1]">
      <seq>gcttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaggagatgccaatgggaggggctgcattggatgctgtaggggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89062" stop="94464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89361" g_stop="89565" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="335" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="447" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="523" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94284" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="534" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E330375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89361" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>GCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416845" ref_strand="+" ref_description="SGN-E416845 [STM-23-B18]">
      <seq>cttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttattttggcaaaccaagaggattcagcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgacagaattgctcgtattgcatttgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89062" stop="95278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89362" g_stop="89565" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="446" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94945" g_stop="94977" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="644" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E416845" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89362" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="94977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACT</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGAATTGCTCGTATTGCATTTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439719" ref_strand="+" ref_description="SGN-E439719 [cSTA-13-E18]">
      <seq>cttctttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttacaggaggtatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89062" stop="94464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89362" g_stop="89565" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="446" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94284" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="533" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E439719" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89362" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTT</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330163" ref_strand="+" ref_description="SGN-E330163 [cTOD-5-F14]">
      <seq>cttctttacaattcactgcaactccttttaaccaatttcattccaaaaaagtacccaaacacgccactaaatggggtactattcgctgttccgcttcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggacctgaagtaatttctgttgccaaaaatgccctccaacttgtctcctccattgaaggatttgaagttgcattcgaagagatgccaatgggaagggctgcattggatgctgtaagggtaccattgcctgatgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89062" stop="92148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89362" g_stop="89565" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="334" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91848" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="368" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E330163" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89362" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAG</genome_strand>
        <mrna_strand>CTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCAATGGGAAGGGCTGCATTGGATGCTGTAAGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467404" ref_strand="+" ref_description="SGN-E467404 [cSTB-48-N13]">
      <seq>ttacaattcactgcaacaccttttaaccaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttgcgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89067" stop="92170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89367" g_stop="89565" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="329" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91870" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="385" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E467404" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89367" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAAC</genome_strand>
        <mrna_strand>TTACAATTCACTGCAACACCTTTTAACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTGCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415285" ref_strand="+" ref_description="SGN-E415285 [STM-21-G5]">
      <seq>accaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattcgaagagatgcctatgggaggggctgcattggatgctgtaggagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcgagaaggcttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaaaaaagaagttgctgaaggtgtagacctaatggttgttagggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89092" stop="94451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89392" g_stop="89565" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="304" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="416" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94151" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="487" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E415285" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89392" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTAC</genome_strand>
        <mrna_strand>ACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAGGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGCTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAAAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475513" ref_strand="+" ref_description="SGN-E475513 [cSTB-40-C10]">
      <seq>accaatttcattcaaaacaagtacccaaacacgccactaaatggggtactattcgctgttccgctgcttcacccagcaaaagctacaacattactcttcttcccggcgatggtattggccctgaagtcatttctgttgccaaaaatgccctccaacttgtcgcctccatcgaaggatttgaagttgcattctaagagatgcctatgggaggggctgcattggatgctgtaagagtaccattgcctgctgagactcttaattctgcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgcttcaacttcaagaaggcttgcaggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89092" stop="92194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89392" g_stop="89565" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.557" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="304" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91894" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="384" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E475513" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89392" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTG</genome_strand>
        <mrna_strand>ACCAATTTCATTCAAAACAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTGCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGCCCTGAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCGCCTCCATCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCTAAGAGATGCCTATGGGAGGGGCTGCATTGGATGCTGTAAGAGTACCATTGCCTGCTGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCAAGAAGGCTTGCAGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584335" ref_strand="+" ref_description="SGN-E584335 [10159]">
      <seq>gaagtcatttctgttgccaaaaatgccctccaactcgtcgcctctattgaaggatttgaagttgcattcgaagagatgcctatgggagggggctgcattggatgctgtagagtaccattgcctgctgagactcttaattcagcaaagaaatctgatgctactcttcttggagcaattggaggatataaatgggacaaaaatgaaaaacatttgaagcccgagactggattgctccaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagaccttatggttgttagggaacttacaggaggtatttattttggccaaccaagaggattcaggcactaatgaaaatggtcaggaaatacgtttcaacactgaagtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89214" stop="94651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89514" g_stop="89565" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.557" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91570" g_stop="91699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="182" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91815" g_stop="91926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="294" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="370" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94274" g_stop="94351" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="449" r_length="79" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E584335" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89514" e_stop="89565"/>
          <exon e_start="91570" e_stop="91699"/>
          <exon e_start="91815" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAGGTAAATATTTGTTTAAAAGTTTGTTACTTTGATTTTATATGTGTTGTTGAAATATGTGCATTTTATGGGGTTGATTTGTCAAATAATTATTATATCATAAAGTCAATCCTGGTATTGATTCCATTGTTTTTCAACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGTGACCACATGAAAAGTCAACTCCGTTTTATCTTGAAACAAGTTTAATTTTTGTAGTGACTTGCATCAACAATGTTAAACCTATTAGGAGTTATGGTTAATCGCTTGACAAAGAAAGTGACTTTCTGAGATAATAACTGTTAGTTGCGTGATTATATGAGAAGTCAACTCCATTTTATCTTGAAACGAGTTTAATTTTTATAGTGACTTGCATCAACAATGTTAAACCGATCAGGAGTTATGGTAAATCGCTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGGTTGAGCGACCATATGAGAAGTCAACTCCATTTTATATTGAAGCGAGTTTAATTTTTATGGTGACTAGCATCAACAATGTTTACACGATCCAGGAGTTATGGTAAATCACTTGACAAAAAAAGTGACCTTTTGAGATAATAACTATTGGTTGTGTGATCATATGAGACGTCAACTCCATTTTATCTTGAAGCGAGTTTAATTTTTATGGTGACTAGCATAAACAATGTTTACACGATCATGATTTATGGTAAATCGCTTCACAAAGAATGTGATTTTCTGCTATAATAACTATTAGTTGATTAACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATCACTTGACAAAGAAAGCGACTTTTTGAGATAATAACTATTGATTGATTGACCATATGATAAATCAGCTTGAAACGGGTTTAATTTTTCTGCTGATGGTGTAACAATGTTTACACAATCATGAGTTATGGTAAATGTATTGATAATAATTAATTAGTAATTTGGTAAAAATTAAGAAGTAACTTGCTATTATCGGTTACTCCCTCTGGTTCAATTTGTTTGTATCATTTTGACTTTGCACTAAGTTAATGAAAGTAAAAGACGGTTTTCGGATATTGTGGTCTTACATTAAAGTTATGTAGAATGTACTAAAATATTCTTTAATCTTGTGGTCGTAAATATGTCATACTGGAAGTTAGAAGTAAAGAGTTAAGAGGAAAGGATACAGACTTTTTTTTAATGAACTCTAAAGTGAAATTGAAGCAGTGGTAAGTAAATCTGTCAGTGTATAACTTAAATTGTTTTGGAAAATGTTAAGAAATGGATGTTTCAAAATGTTTTTGGGATGGGAGTGACTCATATGTGGTTACTGTCATCTTGATTTGAATTTGTTGTGGCACTATTATTCTTTTGGAGTTATATATTTTATTGATTTTAAGAATAATCTTTTAACGAGTATAAAACGTTCAACTTGATGTCCAAGTTCATACTGTTTAGTTTAATGGCATAGCCAAGAATTTTAACTAGGGAATTCAAAAGATTTGAAATTGTGACGGGAAGCAATTTGTGAACTACCTTAGCATTACAATGAGAACTTCCTGGGATTCAGAGTTAATATATATGGGTAGGAATTGTTTTTGTCCTATTTGCGCAGTATGATTTCCCAAAGAGGGAGAAAAAATGGAATAGCCTTCCTTGGGTATGGCTCTGCCACCTTTTAGCACCCAAGGTGGCCCAGACACTGTTGGTGTCGTTCATACTGGAAGTTAGATTTGTTGACCCTGGTTTATGGTTCCATTTTATTTCTTTTGGGGCAAAGGAGTAATTATTATGTGGTGATTTTCACTCTTCATTTGAAGTTTTTGGGTTAAGTATTCCATTTGAGTATTGGTAGTTATATTAATAAAAAGCACCGGGAAGGTACAACAAAAATATTTGCAAATTAAAGCAAAAGTATGTCCAATGGTTAAGGATATAACTCTTAGAAACGTAACAGGATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGG-GGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGGGTAATTACATGATGGGATCTTCTTCTGACATTTTGTTATATTTCATGGATTTTTCTTACTGAATCTGATATTTCTTGTTTCTCGTGCTGGATTTTTCTTGCATCTAAATTTAAAGATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCA-GCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATG</genome_strand>
        <mrna_strand>GAAGTCATTTCTGTTGCCAAAAATGCCCTCCAACTCGTCGCCTCTATTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAGTTGCATTCGAAGAGATGCCTATGGGAGGGGGCTGCATTGGATGCTGTA-GAGTACCATTGCCTGCTGAGACTCTTAATTCAGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG...................................................................................................................ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTCCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTTATGGTTGTTAGGGAACTTACAGGAG.....................................................................................................................GTATTTATTTTGGCCAACCAAGAGGATTCAGGCACTAATGAAAATGGTCAGGAAATACGTTTCAACACTGAAGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250139" ref_strand="+" ref_description="SGN-E250139 [cLEG-11-C1]">
      <seq>catttgaagcccgagactggattgcttcaacttcgagaaggtttgcaggtctttgctaacttgagaccagccactgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91540" stop="96708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91840" g_stop="91926" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="163" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="252" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95754" g_stop="95870" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="456" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95977" g_stop="96084" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="564" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96187" g_stop="96240" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="618" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96241" i_stop="96378" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96379" g_stop="96408" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="648" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E250139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91840" e_stop="91926"/>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95870"/>
          <exon e_start="95977" e_stop="96084"/>
          <exon e_start="96187" e_stop="96240"/>
          <exon e_start="96379" e_stop="96408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAGGTAATTTTTGTTTTCAGATGCTTAAGACTGCTAATCACAAAAAATAAAATCTGTCATATCATTTTGAGAGTATTTTTCAACTGCAAACGCGGTATGTTTTTGACTTACAGGTTACAAGTTTTGTCATATGAAAATTGCAACTAATGATCTCAAAGATAGCATAAGAAGGGAAATTGTCTAATTTAATTCTGGTTTTAAAATTCTTTTGACACACCTATTTGGGTTTTAAAATAAAGTTTTTGCATGAGCTTAATGAGTAATGAGAGATATGGACTCATGTAAACAAAAATGAGGTTCACATTGAGGGCATATACATCTCCCTACACCTTTTGGCACGAGTAACCTCCTACAGCACAAATTAACCGCTGGTACTCCTTCAGCAAGCTAACATGATCTCTGAAACAAGACTCGTACCACCACTTTTTTATATATGTTAATTAAAAAGTTAAAGCATTGCAGGATTTGTGTGAGTAGAGGGTTCTAGTGGTAATGGGTATGAGCAGTCTTGTGGGTGTGGAAGCAAGTTAATGAATTTTGGTGTTGGAAGATGTGTTTTAAAATGCGGAGGCACAAGATAAGCGTGTAATGTATAATGTGGAATGGAGTAAGTGGGTGAGAGCTAAGGAAGAGGCATAAGCCCAATAATTCTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAGGTGAGTCCTGATGAGTTTCAACTTTCCTTACAACATTGGTTGTTAGTGTGGATAGGGTTTGGAGCATAATAGAGCTGATAGGATTGGTTTGTCATTGAGTGGTACAGAGAGAGAGAGAGCGCAATGCAGTAGAGAGCTTTTTTTCTTTTTGCTTTTTGGGGGAGTGGACGTTCATAAGTACTTAGAATGGGACTGATAAAAAGGGCCAAGTGGGTGTTTTCCTAGGTATGTTGTCTATTGTCCCAGTGCACTTCTCTTAATACGTTAAAGTTGGTCCAATATTAAACTGCCTCTACCTCTCTCTTTTTACACCTATTTTTAATTTGTGTTACAAGGATCAGTAATGTTCCTTGTTCAAAGATTTTTTTTTTAGGAATATGAGAAAGATCAGTGGTATGTTTCCAACCGTTGTAAGGTGCTTTGTCGCATAATCAGCAGAAATACAGTGTATACCCATTTAAAAGCTGGTGACTTGTCAATGGTGGATATATCCTTTGTAATATGATCAACCAGAGAGGAGGAGAGTATCATCTGTGAGGATTTCATGATGGCATCCAGAAGTCTTGTCCTGTACGACTGTCCGTCTCTCTATCTTTGTCCAGCTTCCTCCCTCATTCCTTCTTCAACTCAAGACTTTTTCTTTTGGTTAGTTGGCTTTAAAAGTCGGATAAAATGTCTTAGTTGAGACCATTATGAGTTAAACATGGCAAAATATGCTAGAAGTGGATTGTCTATTAACATGTATTGGATACTTGTAAGCTGCCTGTTCATGAGTTCAACTTTTTTTCATCCTTCACTATTATTTGTCTTTTCTTTGATCTGCATGTGCTCTTGAAGACATGAGCCTTTTTTGTTACTGCTACAACCTGCAAGCATCTTTTACCTCTGCAGTTTTTTTAAAATTTAGTCTTTCTTCTACAAAGCCATCATTCACTATCATTTATTACCAAACAGGATACATACTCTTCATGACTTGTCTTTCAAATCATTGCACGCATAAGTTACACTCTGAGTTTCTGCCGGTTCCAACATATTCATATTCCTCACCTAATGCAGTTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTC</genome_strand>
        <mrna_strand>CATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559249" ref_strand="+" ref_description="SGN-E559249 [18716]">
      <seq>cttaaaggggagtgagcccaacaaatgtttggacattagaaaaatgattaaaagatgaaaatctgtagaaaatgtttttaaaatttcataaaattctttaaagaatatgcacaacatttatttgctacctgctcataataatttgtagaattttaagttcttttttgtttgtttgtagaattgtaagttacctaaatgctaattatagaataacatattagttatgatcaaatacttaaaacaaagattaaaactgaagtatttgacgtgtcattgggtggacgattcaaaacatggaagtattttactaggcatccatggagcatatcaagttgacaacacaagggtaaagtaaactgtgcatgtgaatgcccctcttatccaagcgcatcctatacgactttaggacctcaatggttgcctcaggtgcttagaggttgtctctcctcaagatgagtcctggtgagtttcaacatttttccttaaaaccattggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92274" stop="93349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92574" g_stop="93024" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E559249" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92574" e_stop="93024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGT-ATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGAC-TTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAG</genome_strand>
        <mrna_strand>CTTAAAGGGGAGTGAGCCCAACAAATGTTTGGACATTAGAAAAATGATTAAAAGATGAAAATCTGTAGAAAATGTTTTTAAAATTTCATAAAATTCTTTA-AAGAATATGCACAACATTTATTTGCTACCTGCTCATAATAATTTGTAGAATTTTAAGTTCTTTTTTGTTTGTTTGTAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTCATTGGGTGGACGATTCAAAACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTGACAACACAAGGGTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGCATCCTATACGACTTTAGGACCTCAATGGTTGCCTCAGGTGCTTAGAGGTTGTCTCTCCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324034" ref_strand="+" ref_description="SGN-E324034 [cTOC-3-E9]">
      <seq>actgttttaccacagttagtagatgcttcaactttgaagaaagaagttgctgaaggtgtagacctaatggttgttagggaacttactggaggtatttattttggcaaaccaagaggattcagcactgataaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgaaagaattgctcgtattgcatttgaaactgcaaggaagcgaagaggaaaactatgtagcgtggataaagcaaatgtattggaggcctctatgctttggaggaagatagttacagcgttagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtccgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93778" stop="96387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94081" g_stop="94156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="91" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94274" g_stop="94362" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="267" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95754" g_stop="95870" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="384" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95977" g_stop="96084" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="492" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96187" g_stop="96201" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="507" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E324034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94081" e_stop="94156"/>
          <exon e_start="94274" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95870"/>
          <exon e_start="95977" e_stop="96084"/>
          <exon e_start="96187" e_stop="96201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAGGTTAGTTTGGAATTGTTACGGTCAATAATATTCAAATCAACTTCCATCATCTTGAAGTTGTTTCTTGACTTCTCCTTTTTCAAGATGGCTAACTGTTTTCCTCCTCATGTTAATTAGGTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTT</genome_strand>
        <mrna_strand>TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG.....................................................................................................................GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413473" ref_strand="+" ref_description="SGN-E413473 [STM-17-P10]">
      <seq>gcaaaccaagaggattcagcactaatgaaaatggtcaggaaataggtttcaacactgaagtgtatgcagcatatgagatcgacagaattgctcgtattgcatttgaaactgcaaggaagcgtagaggaaaactatgtagcgtggataaagcaaatgttttggaggcctctatgctttggaggaagatagttacagcattagcctcagagtatcctgatgtagagctctctcacatgtatgttgataatgcagccatgcaacttgttcgcaacccaaaacagtttgatacaattgtgacaaacaacatatttggtgacatcctgtctgatgaagcatcaatgattacaggaagtatcgggatgcttccatctgccagtcttggtgcagcgggacctggattgtttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctangtgaggagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93986" stop="96753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94286" g_stop="94362" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94945" g_stop="95031" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="164" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95754" g_stop="95870" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="281" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95977" g_stop="96084" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="389" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96187" g_stop="96240" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="443" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96241" i_stop="96378" i_length="138">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96379" g_stop="96453" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="518" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E413473" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94286" e_stop="94362"/>
          <exon e_start="94945" e_stop="95031"/>
          <exon e_start="95754" e_stop="95870"/>
          <exon e_start="95977" e_stop="96084"/>
          <exon e_start="96187" e_stop="96240"/>
          <exon e_start="96379" e_stop="96453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAGGTAATCTGCTTAAAAAAATTGCTTCCTGCTGTGCTTGCTAAACATGACAAACTTTCAATTATGTTATCCAGTAAAAGGTACCCCCCCCCCCTCCTCCTTTTTCTTTTTTTTTAAATCTTTTGCATGAAGCTGCAAGTGAATGTCTCGAGATCACATTGGAAAATTCGATGTAGTTTTCTGTTTATTTCTTGTTTTGATTGGAAGAGTATTTCAGTTGTGTCATTTCTGTTTGCTTGGCTTGAAGCTGATATGTAATTGATTTTGTTCCATTCGAGAGTTTGGTACTGTTTTCTTTTATATATTTAGTATGATTAACTGCTAGCTATAACATGTGCAGTTTCTGAAAACTTTCTCTGGGCAGACATCCATTTAGGAATTTATTATCTTAGAACTATAGTCAAGTGTCATTTTGTATTAGCTTTGCTTATCTAACTTAATTCTTTTGTTGTCATTCAATCACTGTTGAAACAAGGAGTAATGTCTTACAATTATTAGGAAAAGTAGGACAGATTGAGATCAAACTTTTTACCTGAAATTTGTTCAACCTTTACATTAGTAGTACTCAGCTTAATTTCTTTTCAGATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAGGTAAAAGCTAATTTTTCTCTCCCTGTTCCTCAACCCTTCTTTTCTTCTCCTCAGTATCTGCCTTCAACTTTCTTGTCTAATTCTGTTTCTTTTATAAAACAAGTAAATCTATTAATAGTTGCATCAACGTGGTGCCTCGATAGTCTTCACCACACATATGATTTCTCTTTAACCTTCTGGGGAAAAAAAGAATCTAGTCAACTACCCAACTATCTAGCCAAAAAATTATCTATTCTATATACCAGAAGTAGACTAGAATTAGAAAGGAGCTCGTTATTCTCCAAGAATATCCTTCAATTGGTTTATGTAATCTTTCTTTGCAAATCATCCAGCAAAAGCCATAGTTGAGTCATTCTCACGCTACTCTTCTTCAATCATGAATCTTCACCAATCTCATGCTAGCCAAGGGTGTTTGCTGCTGAATTGTTAATGAGAAATACAACACAAATAAGGGAAAAACAAAAATCCACGAGTCGTAACTCGTGTGCAAGTGTAAGATCAATTAATTAACAAAATCTGCTCTACTTTAAGCAAGTTTCTTGTTTATCCCTTCAGCAGTTGACGTTTTAAAAGAGTTGTACTAAAGACTAAATTTTTCTTTGTTCACTCTAATTTGCCGCTACTTAAAACTGCAACTGGGAGACCATAAAGATAGCATTGAGATTGAGTTCATTAAGGGTAATTTCTTGTTCTATAGTTCGTGATTTTGAGATATTTGCCAGGCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAGGTTTCATTTACCTTTGGTTTTACAATTTTTTGTTTCTCAAGTTTGGTCTTAGCACATGATGACACACTCGTCTATGGAGTTGATCCTCGAAACAATCATAATGCAGTTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCT</genome_strand>
        <mrna_strand>GCAAACCAAGAGGATTCAGCACTAATGAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGTAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTTTTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTATGCTTTGGAGGAAGATAGTTACAGCATTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG..........................................................................................................TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCTGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTGTTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTANGTGAGGAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313385" ref_strand="+" ref_description="SGN-E313385 [cTOA-13-G13]">
      <seq>aagcatcaatgattacaggaagtatcgttatgcttccatctgccagtcttggtgcagcgggacctggattatttgaacctatacatggttctgctcctgatattgctgggcaggataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctangtgaggagaaggctgctcanagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95726" stop="97214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96026" g_stop="96084" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96187" g_stop="96240" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="113" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96241" i_stop="96378" i_length="138">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96379" g_stop="96531" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="266" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96765" g_stop="96914" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="416" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E313385" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96026" e_stop="96084"/>
          <exon e_start="96187" e_stop="96240"/>
          <exon e_start="96379" e_stop="96531"/>
          <exon e_start="96765" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCGGTATTTCTGGATTATCTCTTTTCCTTGGAAATATTGGTTCTTTTTCTAACTCACTACAAATTCTTTAATCTCCTTTTACTTTTGGACACATGTTGCCTCTAGGGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAGGTTGGCTCTAGTATTTCATTCTCTCTCTTTTTCTTTTCCCCCTTCTCCTTTAAGTACGGACAGCCCGCCAACCTCCAACCTCCCATCCGGAAATTCGCATATGTTCACATGCTTAAGCACTAACTTTTGAACATACAGGATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAA</genome_strand>
        <mrna_strand>AAGCATCAATGATTACAGGAAGTATCGTTATGCTTCCATCTGCCAGTCTTGGTGCAGCG......................................................................................................GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG..........................................................................................................................................GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTANGTGAGGAGAAGGCTGCTCANAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551719" ref_strand="+" ref_description="SGN-E551719 [cTSB-1-J9]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96080" stop="97376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96380" g_stop="96531" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96765" g_stop="97075" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="463" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="484"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E551719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96380" e_stop="96531"/>
          <exon e_start="96765" e_stop="97075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554990" ref_strand="+" ref_description="SGN-E554990 [cTSC-6-B11]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96080" stop="97376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96380" g_stop="96531" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96765" g_stop="97075" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="463" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="486"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E554990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96380" e_stop="96531"/>
          <exon e_start="96765" e_stop="97075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556508" ref_strand="+" ref_description="SGN-E556508 [cTSD-3-L15]">
      <seq>ataaagcaaaccctttggcaacaatgctcagtgctgctatgcttctgaagtatggcctaggtgaggagaaggctgctcagagaattgaagcagctgttttagacaccttaaatcgaggattccgtactggtgacattcactcagcaggacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96080" stop="97376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96380" g_stop="96531" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96765" g_stop="97075" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="463" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="486"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E556508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96380" e_stop="96531"/>
          <exon e_start="96765" e_stop="97075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</genome_strand>
        <mrna_strand>ATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341910" ref_strand="+" ref_description="SGN-E341910 [cTOF-9-G12]">
      <seq>ctgaagcagctgttttaagacaccttaaaccgaggactccgtacctggtgccacttcacctcagcaggacacaaattggtcggatgcaaggaaatgggtgaagaagtgcctcaagtctatcgacagcaaaactcctgctgctgtttaattttcttaagaggaggcttcattgagacctcaacaaatgatcattttggcagatgcatttgcagtcagtatataatttgccatttatgccaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagaccattatcctgttgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttatggaatcaactggtgttgcttgcattaggatagactgtctactctacttctccttagaccctatgtgaacacgaaatgctctgtgcatcgggctgtcctttttattttgttgtaacatggaaaaagcaatgaaaataagcatttttgcaccttgggaaaactggaatggaacaattgaaccagatgttgnttgtgggttgctacattgtctctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96165" stop="97593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96464" g_stop="96531" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96765" g_stop="97293" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="605" r_length="533" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E341910" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96464" e_stop="96531"/>
          <exon e_start="96765" e_stop="97293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCAGCTGTTTT-AGACACCTTAAATCGAGGATTCCGTA-CTGGTGACA-TTCA-CTCAGCAGGACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTG-CTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATG-CAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGA-CATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTG-TTGT-GGTTGCTACATTGTCTCTATCTT</genome_strand>
        <mrna_strand>CTGAAGCAGCTGTTTTAAGACACCTTAAACCGAGGACTCCGTACCTGGTGCCACTTCACCTCAGCAGGACAC.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACCATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTG-AACCAGATGTTGNTTGTGGGTTGCTACATTGTCTCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415286" ref_strand="-" ref_description="SGN-E415286 [STM-21-G5]">
      <seq>gacataaattggtcggatgcaaggaaatgggtgaagaagtgctcaagtctatcgacagcaaaactcctgctgctgtttaatttttttaagaggaggcttccttgagccctcaacaaatgatctttttggcagatgcatttgcagtcggtataatttttgccatttatgcaactgtttgaaggattcaaaattgctgagtgttgtatcgtagcctaaacgtctctattcttttgtctgatgtttttgagacattatcatgttgtaacatgaagtgaaccttgtagcaacaataaagttgtcttcacgagttcaagttgtggaatcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96462" stop="97385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96527" g_stop="96531" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96765" g_stop="97085" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="326" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="348"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E415286" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96527" e_stop="96531"/>
          <exon e_start="96765" e_stop="97085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGTGAGTTTTATCTTATAGTAGACAACTCTATTACTAAATTGCCAATATGCTTCTCCTTGGTATATAGCTGATCTCTAATTCTCTTGCACTTGAATGACATTTGGCCATGCGGCCTACAAACGAGAAAAATTAGATTATTCTAGACCCCTATGCATAGTTTGGATCAATTTGAATGCTGAAATTATTTAGAAGCTACCATTATCATATACAACTGCTCAATTGCTTGCTTTCAGAAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAA</genome_strand>
        <mrna_strand>GACAT.........................................................................................................................................................................................................................................AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTTTTAAGAGGAGGCTTCCTTGAGCCCTCAACAAATGATCTTTTTGGCAGATGCATTTGCAGTCGGTATAATTTTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCTATTCTTTTGTCTGATGTTTTTGAGACATTATCATGTTGTAACATGAAGTGAACCTTGTAGCAACAATAAAGTTGTCTTCACGAGTTCAAGTTGTGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349505" ref_strand="+" ref_description="SGN-E349505 [cTOS-1-M7]">
      <seq>aaattgctgagtgttgtatcgtagcctaaacgtctcgattcttttctctgatgtttttgagacattatcctggtgtaacatgaagtgaaccttggagcaacagtaaagttgttttaacgagttcaagttatggaatcaactggtgttgcttgcattaggatagactggctactctacttctccttagaccctatgtgaacacgaaatgctctgtgcatcgggctgtcctttttattttgttgtaacatggaaaaagcaatgaaaataagcatttttgcaccttgggaaacacattgcttctcccaaataaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="96647" stop="97540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96947" g_stop="97235" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E349505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96947" e_stop="97235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAA</genome_strand>
        <mrna_strand>AAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGGTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGGCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731960" ref_strand="+" ref_description="SGN-E731960 [LA28CG05]">
      <seq>cccctaactcgtccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatccgcggattgtacagtggcctcttgccgtcattggctgggattagtcatgttgctatccaatttccagcatatgaaaagctgaaatcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98580" stop="104675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98880" g_stop="99158" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99665" g_stop="99760" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="375" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101143" g_stop="101249" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="482" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101709" g_stop="101757" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="531" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101933" g_stop="102045" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="644" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102046" i_stop="103962" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103963" g_stop="104057" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="739" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104058" i_stop="104298" i_length="241">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104299" g_stop="104375" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="816" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E731960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98880" e_stop="99158"/>
          <exon e_start="99665" e_stop="99760"/>
          <exon e_start="101143" e_stop="101249"/>
          <exon e_start="101709" e_stop="101757"/>
          <exon e_start="101933" e_stop="102045"/>
          <exon e_start="103963" e_stop="104057"/>
          <exon e_start="104299" e_stop="104375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACT</genome_strand>
        <mrna_strand>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745103" ref_strand="+" ref_description="SGN-E745103 [GI|47106025]">
      <seq>gaactcgtccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatccgcggattgtacagtggcctcttgccgtcattggctgggattagtcatgttgctatccaatttccagcatatgaaaagctgaaatcgtacttggcaaaaagggccaataagcataccaatgaactaaactctggtgaagtagcaattgcctcttcgatggcaaaaatacttgcctctgtaatgacttatccacatgaggtcgttcgttctaaacttcaagaacaagggcaagtaagaaactcagagaaagcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttcttttttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98585" stop="105499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98884" g_stop="99158" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99665" g_stop="99760" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101143" g_stop="101249" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="478" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101709" g_stop="101757" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="527" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101933" g_stop="102045" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="640" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102046" i_stop="103962" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103963" g_stop="104057" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="735" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104058" i_stop="104298" i_length="241">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104299" g_stop="104387" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="824" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104388" i_stop="104480" i_length="93">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104481" g_stop="104575" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="919" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="104576" i_stop="104656" i_length="81">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="104657" g_stop="105199" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1465" r_length="546" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1466" polyA_stop="1479"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E745103" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1462</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98884" e_stop="99158"/>
          <exon e_start="99665" e_stop="99760"/>
          <exon e_start="101143" e_stop="101249"/>
          <exon e_start="101709" e_stop="101757"/>
          <exon e_start="101933" e_stop="102045"/>
          <exon e_start="103963" e_stop="104057"/>
          <exon e_start="104299" e_stop="104387"/>
          <exon e_start="104481" e_stop="104575"/>
          <exon e_start="104657" e_stop="105199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGGGTGAGAAGCTTTTCTCTTTTATCAGTTGCGGAAGTTTGTTTCTCATTTATCTCTTATCTGATTGATCACGTGATGTCTTTCTTGAACTGCCAGCCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAGGTAAGCAGGAAATGGACCAAGACCATCTTTGTTCTTTCCTGGAAACACAGTCCTACTTATTTATCTATCGTTCTTGACCAGGTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTC---TTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>GAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG.............................................................................................CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG.................................................................................GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343854" ref_strand="+" ref_description="SGN-E343854 [cTOF-12-B13]">
      <seq>tccaagacgtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggaggggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatgaagaagggatcccgcggattgtacagtggcctcttgccgtcattggctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98591" stop="104623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98891" g_stop="99158" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99665" g_stop="99760" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="364" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101143" g_stop="101249" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="471" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101709" g_stop="101757" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="520" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101933" g_stop="102045" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="633" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102046" i_stop="103962" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103963" g_stop="104057" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="730" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104058" i_stop="104298" i_length="241">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104299" g_stop="104323" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="755" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E343854" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98891" e_stop="99158"/>
          <exon e_start="99665" e_stop="99760"/>
          <exon e_start="101143" e_stop="101249"/>
          <exon e_start="101709" e_stop="101757"/>
          <exon e_start="101933" e_stop="102045"/>
          <exon e_start="103963" e_stop="104057"/>
          <exon e_start="104299" e_stop="104323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGGA-GGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGAT-CCGCGGATTGTACAGGTTAGTTATATAGCGAAGATAGTTATATACAAACTTTTTACGTATGTGTGTTTCATCCTTTGTAGAGACGCTTCAGTTCCATACCCTCTTAACCAACTATGCGAAGATGGAAAACATCTTCATAGGATAATAAGCAATTACTCGTCCAAAAAAAAGAAAAAACAATATCCATTTTCATCACCTGATGTTGACTCTAGTTAGTTATTTTGGGTTTGATATCTCCGTTTGCTTTGGGTTGCAGTGGCCTCTTGCCGTCATTGGCTGGG</genome_strand>
        <mrna_strand>TCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAGGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCCGCGGATTGTACAG.................................................................................................................................................................................................................................................TGGCCTCTTGCCGTCATTGGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544434" ref_strand="+" ref_description="SGN-E544434 [TUS-66-M6]">
      <seq>gtcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacacagggaatgagggaagggtgtagttccttataaaggtatattgtctgctttaatacgaataacacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98599" stop="104333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98899" g_stop="99158" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99665" g_stop="99760" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="356" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101143" g_stop="101249" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="463" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101709" g_stop="101757" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="512" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101933" g_stop="102045" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="625" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102046" i_stop="103962" i_length="1917">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103963" g_stop="104033" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="697" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E544434" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98899" e_stop="99158"/>
          <exon e_start="99665" e_stop="99760"/>
          <exon e_start="101143" e_stop="101249"/>
          <exon e_start="101709" e_stop="101757"/>
          <exon e_start="101933" e_stop="102045"/>
          <exon e_start="103963" e_stop="104033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATGGTAGGTCTCTCTCATATAGTTAGCGTAGATTTATTCTTCTGTGCGCACTTTATTGTACCTTAAAATGCATAAATGCTCAGAAATTTAATAGAATACCAATTTGATTAAGTTGGCTTCCTTCAATTTGGGTAATTGGTGTTGTTGGTAGGGAGCCATGATCCATGCACTTCCATTTTTCTATATATTTCCTTGCCCTGCTCTAGTTTCTGCAGTCTTTATCACTGTTCTATTACGTATCCATGTATGCTTTCCTTCATCAACTATGATCCGAGAGAAGAATGGGAATAGGTGAAATGCAATCCTTTACCTCGTGAGGGCTTAAATGTGGAGTATCAAAAGTTTCTTTTATGTTGGTGGCATCCGAGTTAGCTTGTGTGTAACTCGACTGTTTTACCGGGTACATGCTATCTCCCACCAGCACAGGTATCATGTAGCTCTGCCAACTAGGCCAGTAGGCCTAGTCACCTAGACAGATGAAAAGAGATCACCTAGTCTTTCTTTCCTCTGTTGGTATTGGAGTATTAGAGTGATACATCTGGAAAATTGAAACCAAGACTAGCTGTCTGTATGTAAGCCTGTTGATATAGTTAGGATTATGCTGCTCTATAGCTAGTGAAAGAAAAATTCCTCTGATTTTTCTGTCCTCCCCCTTATCAAAAAGGAGTTTCTCATGTGCATATTCAGCATGTTCACTTTTCTATCATGATTTCTTAATAGAGAGAAGAATGCAGATTCCACACAGTTTAGAAATCCTGAGATATGCATTAACCCCTCCAACCGAAGCATGGATAGTAGAAAAGTTGACTTGGGGCATTTGACTGGAATCACATGCAATAAGCAAGCATAGGGGAGAGAAATTCTAAAATTTTATGAGGGTAGGTAAACATGTCATGGACATTTTCAGAATTCCCATGCTTTTTTTTTTCTCTTCTAAAGGGAGAAGTCTCTTGTGAGTTAGTTGATCCAGTCCAGTTGAGGCCCTGGTCTGAAACTCGAGGAAGCATGGGCCTGCCCCCCTCTACCCTCCTCCTCCTCTCACTTATATGTTAGGCTTTAGTTCTTCGCAGGTTCAATCTTGTTACCCAATTACGCATCCTGTGTTGTGGTTCTTTTGTTGTTGAATCAAAACATTGGGGCAAGAGTTCCCTTGTGTTTCAGATATACCTTTGTTGTAGTAAAGGATATATCATCTTGTTGTATTCCTTTTTTAATTATTTCTAGCACATTTCGTGCTATATATATAATAGTTACCTTCTTTCAGAAAAGGATATACACATCTTGTGGATAGTTGATTTGAGTTTGTGAACATTTGATATAGATCCATACCTGGATAGCTACAACATGTAGGTGAATTATCAATGAAACGCTTCAACTTATCAAAAAAATGTTCTTGTTGGATAATTGGTGTCTGGTGCAACTGCAGCTTGCCGTATTTCCAGCAACTGAAATTGGTGTAACAACAGTAAATAGTTCTAATTAGTATAATTGGAGATGCTTCTTCACTAAAATGAATCAGAATCTAAACTTACGTGTATCAATTTAGTCATGTTCACGTTTTCTTTAGATTCAATATTTGCTAAGAGTCTTTGTCTTCTAAGAGATTTATATTCCGGGAAAATATGTTGATAATTTGCTGCCAGAGAATCTATTTTGTAAGGATTCTCATAGCTGATCCCAATTTGTTCGGAATTGAGGCATAATTGTAGTACCCATTGTTGTAAGCATCTGCAGATGGTGCCAATACAGTTGTCGTCCTAGTGCAACATAAGCGTGTTAAGTTCACGTAACATAGGCGAAAGCACAAGTTTCTAATACCATTAGAGTTTATTGTTAGGGTGTCCTTAATTACTATTGGAATAATAACTTGCATTTGCTTACGTAGCGTGTTCCTGATATTTTCTTTTCCTCATTCTTTAGACACAGGGAATGAGGG-AGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGA</genome_strand>
        <mrna_strand>GTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGAATGAGGGAAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308004" ref_strand="+" ref_description="SGN-E308004 [cLEY-14-M19]">
      <seq>tcagtggaccggtcattcttcttgaaaacccaaaagggtatttgtatatgatgaaaccccacctgggtttttgctaaatcttcaaagggttctttaaattcttgaaaaaagagtgattttttcagttttttttcaatatttttgctgttgtttgggttgttgaggtaaagttttccggcaagaatgaccaccgccggcgccggcgaccttaagagtgttagaggtatcatatgtgaagttggtgctggtgcttctgcaggtgccattgctgctacatttatgtgtccattggatgttattaagacaagactgcaagtacatggtctgcctcaggtttctcaatctgctcgtcaaggtagtgtcattgtcacaagcttacagaatatactaagaacagaaggtttcaggggactttatcgaggcctttcaccaacattgacagctcttcttccgaactgggcggtgtacttcacagtttatgaacatctcaaggattcgttgcattcacatgtggatagcagtgggcagcttacgattggtgcaaacatgcttgcagctgcgggggcgggggctgcaacatccattacaacaaatccattgtgggttgttaagacccggctcatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="98600" stop="102345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98900" g_stop="99158" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99665" g_stop="99760" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="355" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101143" g_stop="101249" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="462" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101709" g_stop="101757" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="511" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101933" g_stop="102045" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="624" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E308004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98900" e_stop="99158"/>
          <exon e_start="99665" e_stop="99760"/>
          <exon e_start="101143" e_stop="101249"/>
          <exon e_start="101709" e_stop="101757"/>
          <exon e_start="101933" e_stop="102045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAGGTATGTACTGGACTCCTTTTTTTTCCTTTTGAATTTAATTTGTCAATTGTTGTTATCTGGGGTTTTAATGTTAGAGAAGGTAAATGGTTTTGTTTTTTGATCTTTGAGTTTTTTGAGCTATTTGAATGTGATTTTTAGTTAATTGGGGGTTGTAAAAATCATTGCTTTTGTATATTTGGGTAGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTTTTCAGCTGTTTGAATGTGAATTTGAGTTAATTGGGGGGTGCGTTTTTTTAGGTGCTACTGCTGCTACATTTATGTATACATTGGATCTTTTAGTTTTCTTTGAGCTGTTTGAATGTGAATTTGAGTTAATCGGAGATTTTTTAGGTGCTATTGCTGCTGTATTTGTGTGTAAATTGGATCTTTGAGGTTTTTGAGCTATTTGAATGTGAATTGAGTTGATTGGGGGTTGTAAAAATCTAAGCTTTTGTATCTTTTGATGTTCTTAAGGTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAGGTTTGTGCTCGTCGTTGTCTCTTATATTAGAAATGATAAGAACTGCTACCTTAAGTCGAATTGCTTCCTTCCGATTGAACAAATGCAAAAATGATATATTAAGATTAATGTGATCTTCTAATTGAATTATTTCATAGCTCTAGTAATGATCTGTAGATCCCTTATAACACGTCGATGGTGTCCTATATATAACAGATAAGAACACTTCTTGTTCACAACTTAACAACCATGAGAATTTCTATTTGCCTTTTGTGTGAACAAAACACCACTCAGATCAACATATCTAAAAAATGGACTGCGAATCATTAATGCTTATCCGATCAAACGAAGCATAAATGACAGACCTGAGTTTTCCTCATTTTCAACGATAATTCATTTCAGGTCCTGCTCCTCACTACTAGTTGACTTGGATTTAAGACAGATTGTCAAAATCTAGCGATAACTTTTACCCTGATTTTACAACAGAACAATGGATTCTATGTTTTTCCAGTTATAGCATATCTCTGGTAAAAGAAGTCCGGCTGTTGCTTTGAATTCTTACCAATCTTCTCAGGCAAAGTAGAAGTATTAGCTTTTATTGACTGCCCCTTATAATTTTTACTTATCTTTGTGTTCTTCTAGATTCTTAAGTAAGGTATTTGTTAGCATAAAAATAGGGGTGCTGTACAGTTGCATTATACATTACCTTATCCAAACAAATATGTGACTACGAAAACATATATCCAACCAATATACCCAGGTTGGATCTTTTTTGAGCTCCAACATAGCAACAAAAGAATATGCATTCTGGATTTAGGAATTTTCTTGTCTTGGATGCTTAATTATTTCACACAAAGCTGTACCTTAGTGCATGAAGAGCTATTTTGTTGTATTTTTTCTGTCTTCATGTTCCTTCAGCTTTCACTCAGATAGGCTGCCCATAGGGCTTCTGTTTCCTCCAATTTCCATTTTCTCCAGTGTAGGATGTCCAACATGTTGCTTTTGGTGCTTTTCCTTGTATTTCTGCTTTCCATATTTGATGTAGTCATTTTCTAAATGGACTTCCACATTCTGTACATTGTGCACTCTAAGCTCATCGCATCTTTGTGGGAAATTTCCTTTGGCAGTGAGTATAATTTGGTGATTTAGAGCAGAGTTGCTGTCGACTTTTTCATGAAGGTCTCTAGGGCTAGTTATATTTTCTTCTTATTTGAACAAGTGTTAATTTGAGGAGCTGATAATTGGGCTTTCATCTTGTTCCTTCTTTGGATGAATATACTTTTTTTTGGTCTTCTGTTGAACCTATTTAGATGGTAACCATAGAAAAAGAGGCAAAGACAAAAAAGAAGTCCGAATCCATATTACTGCCACACTTATTTTTCCTTGAATTATTTGGGCAACAGGTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCGGTAAGCATTGTCTTGTTCAATTTCTATTTCTGTGGATTGCAATTAGTTGAACTTCCTTCATGAAATGAATCATCAAAATTGAATGAGATAAATATTCAGATATGGTCTCTTATGGAACTGCATCCTTTCTTATTGAATAATGCAATGATTAGGGTTACCTTGCACACCACCACAAACATGTTCTTATTGCTGATGAAGAATAAAAATGAATAAGGCTTTCCTTTTGGGCGGGGGCAGGTGTTGCTGTATTGAACTCCTGGATAGCTTTTTAATCATTTAATGGAAATTAAAAGTTGATTTACCAGTGTTAGCTGTAATCTTATCGGCTTTGTTTACAACTGACTCCATGTTGGCATATATTTTCTGTGCATGCTGAATGCTGAATCCACCCACCCTTTTTTCTTCTGAATTTCCACATAAGTAACTGTTTTGAGAAAAAAACATTCACATCTTCTGCAGGTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATGGTAAACTTTTACTCTATTAGTTTTCTGGACTAATAGCTTCCATCACTTCTTTTTTAAATGTTTGTTTGAATGCCATCATATTTTTTAATCCTTTACTATTGGAAGTTGTGATGAAGACAATAGGAAACTTAGCACTTAGCTTTACCAAAAGAATTTTCTTGCGCGTTAAATGCAGTGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG</genome_strand>
        <mrna_strand>TCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG...............................................................................................................................................................................TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544433" ref_strand="+" ref_description="SGN-E544433 [TUS-66-M6](-)">
      <seq>gggcaagtaagaaactcagagaaagcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttctttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104384" stop="105499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104684" g_stop="105199" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105200" i_stop="105360" i_length="161">
            <donor d_prob="0.233" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105361" g_stop="105371" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="527" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E544433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104684" e_stop="105199"/>
          <exon e_start="105361" e_stop="105371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGAGTCTGAATTCTTCATCATCTTTGATTATTTGTTCTACTGAGTGGGATTACGTTGGATATGTTGTTCTTCTTCCTTTTTTTCACCTTGGAAAATGATTGGCTAATTCTTGATTATTGACCCATTCTTGAATTGCAATTTCTAAATAAATGATTTGTCTGTAGACAATTAATTA</genome_strand>
        <mrna_strand>GGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA.................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217916" ref_strand="+" ref_description="SGN-E217916 [cLEL-23-E13](-)">
      <seq>gcatataatggggttgtcgattgtgtaaaaaagatgttcaaacaggaacgtctgactgcattctaccggggttgtggaaccaatcttctaaggaccacaccctctgctgttattacatttaccagttatgaaatgatccacaaaatacttcaacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattacaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagagatgtttctctttttccttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaacaagggcgcggatagtttccctctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104408" stop="105499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104708" g_stop="105199" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="508"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E217916" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104708" e_stop="105199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>GCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCCTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAACAAGGGCGCGGATAGTTTCCCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218136" ref_strand="+" ref_description="SGN-E218136 [cLEL-23-E13](-)">
      <seq>aacgagctatacttccagaaaaggattcagaaccaaatcctagacgtaaatcccataaggtagccgaagaacatggagacaatgatgaaaaattccaacaatcagaaagcacatcaaataagagaactcctttaattccattgagtaactctgataatctaactgctagacattgattagaaatgtttctctttttctttttttttttttttgtcgtggaagcaatttgcaacaagtgtttgctgttgcacaattttttttattttgtatcttactattttgggtgaagaaagttttatatttcgatctaataaagaagggcgcggatagtttccctctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="+" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104559" stop="105497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104859" g_stop="105199" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="357"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="+" ref_id="SGN-E218136" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104859" e_stop="105199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA</genome_strand>
        <mrna_strand>AACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTCCAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAAATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434063" ref_strand="-" ref_description="SGN-E434063 [STM-59-K16]">
      <seq>ctcatatcatcaaagcaagctgtagatatgaacagacatatgcacgagattaatttggcaaactacgcgatgaacaggatactaaaatccgcatttgatgaggtgattgatccatctcttggattcgagacagatgctgaagttaggaggatgacaacatcagtggcagaactagctttccagtgcttgcaagttgtcaaggacatgagacctacaatggaagaagtacacgatgcgttgaagcttatcaaatacagtgaatggaaaaattatcagaaaaaggatatcaatagctgcaataccaagacaagaactgtaaaagttcatcgtcatccttctgaaacggatgatgctgtgttattgaagaaaaacattccagcttcacctgatactgtgattgatacatgggctagtagttccactacaactagtactggagggtgatatttcataaactcatttttcccctttatgttagatacatatcatgatatcatttttatagagtttttttagcttgtttcagcctgttcatgaatatagtagatgaagctttcttaaagtgttagttatagtcacatatgtatatgattcccctttagactatgttgctcggattctcctaaaatgttgttgcacgtgtgtctgatcctccaaaaatgcactacttctagaggatccgcacacacttgtgagcatttttgaaaattttctggatagattatcctggctttaaataaaaaaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0118J18-rJoZJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0118J18.1" temp_strand="-" temp_description="C05SLm0118J18.1  AC225041.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0118J18 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="106543" stop="105433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106468" g_stop="105736" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="745"/>
      <MATCH_line gen_id="C05SLm0118J18.1" gen_strand="-" ref_id="SGN-E434063" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0118J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434063" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106468" e_stop="105736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGATTCGAGACAGATGCTGAAGTCAGGAGGATGACAATATCAGTAGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGAAACGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAACAACTGTAAAAGTTCATCGTTATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACACTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGCAGTTCCACTACAACTAGTACTGGAGGGTGATGTTTCATAAACTCATTTTCCCCCTTCATTTTAAATACATATCATGATGTCATTTTTATAGAGTTTTTTCAGCTTGTTTCAGCCTGTTCAGGAATATAGTAAATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCCCCTAAAGTGTTGCTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTTTGGAGGATCCGTACACACCTGTGAGCATTTTTGAAAATTTTCTCTATGGGTTATCCTGGCTT</genome_strand>
        <mrna_strand>CTCATATCATCAAAGCAAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCCGCATTTGATGAGGTGATTGATCCATCTCTTGGATTCGAGACAGATGCTGAAGTTAGGAGGATGACAACATCAGTGGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGATGCGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAAGAACTGTAAAAGTTCATCGTCATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACATTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGTAGTTCCACTACAACTAGTACTGGAGGGTGATATTTCATAAACTCATTTTTCCCCTTTATGTTAGATACATATCATGATATCATTTTTATAGAGTTTTTTTAGCTTGTTTCAGCCTGTTCATGAATATAGTAGATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCTCCTAAAATGTTGTTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTCTAGAGGATCCGCACACACTTGTGAGCATTTTTGAAAATTTTCTGGATAGATTATCCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>106</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8184" PGL_stop="7563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8184" e_stop="7563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8184" e_stop="7563" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8184" stop="7563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGTGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</gDNA_template>
            <first_frame> S  V  L  L  C  S  C  I  R  C  C  E  F  P  C  C  S  K  I  I  A  H  F  Y  S  K  R  S  F  S  E  L  L  S  F  Q  L  E  Y  Q  L  D  Q  C  W  I  C  N  T  S  D  R  *  H  F  S  I  S  Q  G  N  Q  K  G  F  G  I  S  G  C  *  I  W  K  T  D  *  L  *  *  D  F  P  Q  E  V  L  W  S  F  S  S  P  T  G  F  V  *  S  S  Q  *  C  R  G  *  Y  S  I  S  S  F  G  I  K  R  D  A  S  *  C  *  P  F  L  H  L  G  P  Q  T  G  R  K  A  I  R  G  Y  I  I  C  T  *  *  A  F  S  A  P  *  K  L  E  W  W  E  F  S  *  R  S  V  *  K  L  W  C  L  *  L  T  *  I  F  K  K  I  Q  *  A  G  N  *  S  S  S  H  V  Q  I  D  K  S  N  P  G  S  T  C  Y  T  G  G  S  *  A  </first_frame>
            <second_frame>  Q  S  C  C  V  P  A  L  G  V  V  N  S  L  A  A  A  K  S  S  R  T  F  T  P  S  A  P  S  L  N  S  C  L  F  N  W  N  T  S  L  T  N  A  G  Y  A  T  R  P  I  D  N  I  F  Q  F  H  K  A  I  R  K  D  L  E  F  L  D  V  E  S  G  K  L  T  D  C  D  E  T  F  L  R  K  F  C  G  R  F  R  L  L  R  G  L  Y  K  A  H  S  N  A  E  D  D  I  V  F  P  A  L  E  S  K  E  T  L  H  N  V  S  H  S  Y  T  L  D  H  K  Q  E  E  K  L  F  E  D  I  S  S  A  L  D  E  L  S  Q  L  R  E  N  L  N  G  G  S  S  V  K  G  P  C  R  N  S  G  A  C  D  L  H  E  Y  S  R  K  Y  N  E  L  A  T  K  V  Q  A  M  C  K  S  I  K  V  T  L  D  Q  H  V  I  R  E  E  V  E  L </second_frame>
            <third_frame>   S  L  V  V  F  L  H  *  V  L  *  I  P  L  L  Q  Q  N  H  R  A  L  L  L  Q  A  L  L  L  *  T  P  V  F  S  T  G  I  P  A  *  P  M  L  D  M  Q  H  V  R  S  I  T  F  F  N  F  T  R  Q  S  E  R  I  W  N  F  W  M  L  N  L  E  N  *  L  I  V  M  R  L  S  S  G  S  F  V  V  V  F  V  S  Y  G  V  C  I  K  L  T  V  M  Q  R  M  I  *  Y  F  Q  L  W  N  Q  K  R  R  F  I  M  L  A  I  L  T  P  W  T  T  N  R  K  K  S  Y  S  R  I  Y  H  L  H  L  M  S  F  L  S  S  V  K  T  *  M  V  G  V  Q  L  K  V  R  V  E  T  L  V  L  V  T  Y  M  N  I  Q  E  N  T  M  S  W  Q  L  K  F  K  P  C  A  N  R  *  K  *  P  W  I  N  M  L  Y  G  R  K  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8183" stop="7563"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSCCVPALGVVNSLAAAKSSRTFTPSAPSLNSCLFNWNTSLTNAGYATRPIDNIFQFHKAIRKDLEFLDVESGKLTDCDETFLRKFCGRFRLLRGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALDELSQLRENLNGGSSVKGPCRNSGACDLHEYSRKYNELATKVQAMCKSIKVTLDQHVIREEVEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9639" PGL_stop="8374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9639" e_stop="9308"/>
            <exon e_start="9180" e_stop="8955"/>
            <exon e_start="8778" e_stop="8610"/>
            <exon e_start="8497" e_stop="8374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.240" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9639" e_stop="9308" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9307" i_stop="9181" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9180" e_stop="8955" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.985">
            <gDNA_intron_boundary i_start="8954" i_stop="8779" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8778" e_stop="8610" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.240">
            <gDNA_intron_boundary i_start="8609" i_stop="8498" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="8497" e_stop="8374" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9639" stop="9308"/>
              <exon start="9180" stop="8955"/>
              <exon start="8778" stop="8610"/>
              <exon start="8497" stop="8374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAG : TATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAG : GTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAG : CACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTCAAGTGTAACCGGTTGCTGTCCTGCTAAAATTTTAGCTGGGAA</gDNA_template>
            <first_frame> K  K  L  T  N  K  R  K  A  C  E  E  S  R  T  H  N  N  S  D  S  V  V  R  G  L  I  G  Q  A  E  N  V  P  C  P  C  E  S  S  S  R  E  F  L  V  S  N  L  N  L  K  E  S  T  L  N  R  P  V  D  E  I  L  H  W  H  K  A  I  R  K  E  L  N  D  I  T  E  A  A  R  E  I  K  L  R  G  D  F  S  D  L  S  A  F  N  Q  R  L  Q  F  I  A  E  V  C  I  F  H  S :   I  A  E  D  K  V  I  F  P  A  V  D  A  E  I  S  F  A  Q  E  H  A  E  E  E  N  E  F  D  K  F  R  C  L  I  E  S  V  Q  S  A  G  S  N  S  T  S  V  E  F  Y  S  E  L  C  S  Q  A  D  H  I  M  E  T  V  E  R  H  F  C  N  E  E  A  Q  :  V  L  P  L  A  R  K  H  F  S  A  K  R  Q  R  E  L  L  Y  Q  S  L  C  V  M  P  L  R  L  I  E  C  V  L  P  W  L  V  G  S  L  S  E  E  E  A  R  S  F  L  Q  N  M  H  L  A   : A  P  A  S  D  T  A  L  V  T  L  F  S  G  W  A  C  K  G  R  P  D  D  I  C  L  S  S  S  V  T  G  C  C  P  A  K  I  L  A  G   </first_frame>
            <second_frame>  K  S  *  Q  T  N  A  R  L  V  K  R  V  E  H  T  I  I  Q  I  L  L  L  E  A  *  L  V  R  Q  R  M  F  L  V  L  V  N  L  L  A  G  N  F  L  S  Q  I  *  I  L  K  N  P  L  *  I  A  R  L  M  R  Y  C  I  G  T  R  L  L  E  R  S  *  M  T  *  Q  K  Q  L  G  K  *  S  C  V  E  I  F  L  I  Y  L  P  S  T  R  G  F  S  L  L  L  K  F  V  S  F  I   : V  L  P  R  T  K  L  Y  F  L  Q  *  M  Q  K  Y  H  L  P  R  S  M  R  K  K  K  T  S  L  I  N  L  D  A  *  *  K  A  F  R  V  L  D  P  T  Q  L  L  *  N  F  I  Q  N  C  A  H  K  L  I  I  *  W  R  Q  W  K  D  T  S  V  M  R  R  L  R :   F  F  H  S  H  E  N  I  L  A  P  K  G  S  G  N  S  F  T  R  A  C  V  L  C  H  L  D  S  *  N  A  S  Y  H  G  W  *  V  H  *  V  R  R  K  Q  G  L  F  F  R  T  C  I  W  Q  :  H  Q  H  Q  T  L  L  W  S  H  F  S  L  V  G  H  A  K  V  V  Q  M  T  F  V  Y  L  Q  V  *  P  V  A  V  L  L  K  F  *  L  G  </second_frame>
            <third_frame>   K  V  N  K  Q  T  Q  G  L  *  R  E  *  N  T  Q  *  F  R  F  C  C  *  R  L  N  W  S  G  R  E  C  S  L  S  L  *  I  F  *  Q  G  I  S  C  L  K  F  E  S  *  R  I  H  S  E  S  P  G  *  *  D  T  A  L  A  Q  G  Y  *  K  G  V  E  *  H  N  R  S  S  *  G  N  K  V  A  W  R  F  F  *  F  I  C  L  Q  P  E  A  S  V  Y  C  *  S  L  Y  L  S  *  :  Y  C  R  G  Q  S  Y  I  S  C  S  R  C  R  N  I  I  C  P  G  A  C  G  R  R  K  R  V  *  *  I  *  M  L  D  R  K  R  S  E  C  W  I  Q  L  N  F  C  R  I  L  F  R  T  V  L  T  S  *  S  Y  N  G  D  S  G  K  T  L  L  *  *  G  G  S   : G  S  S  T  R  T  K  T  F  *  R  Q  K  A  A  G  T  P  L  P  E  L  V  C  Y  A  T  *  T  H  R  M  R  L  T  M  V  G  R  F  I  K  *  G  G  S  K  V  F  S  S  E  H  A  S  G  S :   T  S  I  R  H  C  F  G  H  T  F  L  W  L  G  M  Q  R  S  S  R  *  H  L  F  I  F  K  C  N  R  L  L  S  C  *  N  F  S  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9639" stop="9308"/>
                    <exon start="9180" stop="8955"/>
                    <exon start="8778" stop="8610"/>
                    <exon start="8497" stop="8376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLTNKRKACEESRTHNNSDSVVRGLIGQAENVPCPCESSSREFLVSNLNLKESTLNRPVDEILHWHKAIRKELNDITEAAREIKLRGDFSDLSAFNQRLQFIAEVCIFHSIAEDKVIFPAVDAEISFAQEHAEEENEFDKFRCLIESVQSAGSNSTSVEFYSELCSQADHIMETVERHFCNEEAQVLPLARKHFSAKRQRELLYQSLCVMPLRLIECVLPWLVGSLSEEEARSFLQNMHLAAPASDTALVTLFSGWACKGRPDDICLSSSVTGCCPAKILAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26991" PGL_stop="36955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26991" e_stop="27347"/>
            <exon e_start="28471" e_stop="28615"/>
            <exon e_start="29698" e_stop="29858"/>
            <exon e_start="30412" e_stop="30591"/>
            <exon e_start="31539" e_stop="31614"/>
            <exon e_start="32118" e_stop="32195"/>
            <exon e_start="32947" e_stop="33032"/>
            <exon e_start="33560" e_stop="33633"/>
            <exon e_start="33936" e_stop="33981"/>
            <exon e_start="34974" e_stop="35083"/>
            <exon e_start="35446" e_stop="35620"/>
            <exon e_start="36168" e_stop="36287"/>
            <exon e_start="36467" e_stop="36955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.984" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.931" e_score="0.975"/>
          <exon-intron don_prob="0.982" acc_prob="0.567" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="26991" e_stop="27347" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27348" i_stop="28470" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28471" e_stop="28615" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.846">
            <gDNA_intron_boundary i_start="28616" i_stop="29697" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="29698" e_stop="29858" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.931">
            <gDNA_intron_boundary i_start="29859" i_stop="30411" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30412" e_stop="30591" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.567">
            <gDNA_intron_boundary i_start="30592" i_stop="31538" i_length="947"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31539" e_stop="31614" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.841" acc_prob="0.958">
            <gDNA_intron_boundary i_start="31615" i_stop="32117" i_length="503"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32118" e_stop="32195" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32196" i_stop="32946" i_length="751"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32947" e_stop="33032" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.086" acc_prob="0.992">
            <gDNA_intron_boundary i_start="33033" i_stop="33559" i_length="527"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33560" e_stop="33633" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.941" acc_prob="0.667">
            <gDNA_intron_boundary i_start="33634" i_stop="33935" i_length="302"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33936" e_stop="33981" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33982" i_stop="34973" i_length="992"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34974" e_stop="35083" e_length="110"/>
          </exon>
          <intron i_serial="10" don_prob="0.935" acc_prob="0.964">
            <gDNA_intron_boundary i_start="35084" i_stop="35445" i_length="362"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="35446" e_stop="35620" e_length="175"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="36168" e_stop="36287" e_length="120"/>
          </exon>
          <intron i_serial="12" don_prob="0.913" acc_prob="0.937">
            <gDNA_intron_boundary i_start="36288" i_stop="36466" i_length="179"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="36467" e_stop="36955" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27347"/>
              <exon start="28471" stop="28615"/>
              <exon start="29698" stop="29771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26992" stop="27295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27080" stop="27347"/>
              <exon start="28471" stop="28615"/>
              <exon start="29698" stop="29722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27347"/>
              <exon start="28471" stop="28615"/>
              <exon start="29698" stop="29856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27347"/>
              <exon start="28471" stop="28615"/>
              <exon start="29698" stop="29815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27096" stop="27347"/>
              <exon start="28471" stop="28615"/>
              <exon start="29698" stop="29720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29806" stop="29858"/>
              <exon start="30412" stop="30591"/>
              <exon start="31539" stop="31614"/>
              <exon start="32118" stop="32195"/>
              <exon start="32947" stop="33032"/>
              <exon start="33560" stop="33633"/>
              <exon start="33936" stop="33972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29806" stop="29858"/>
              <exon start="30412" stop="30591"/>
              <exon start="31539" stop="31614"/>
              <exon start="32118" stop="32195"/>
              <exon start="32947" stop="33032"/>
              <exon start="33560" stop="33593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29806" stop="29858"/>
              <exon start="30412" stop="30591"/>
              <exon start="31539" stop="31614"/>
              <exon start="32118" stop="32195"/>
              <exon start="32947" stop="33032"/>
              <exon start="33560" stop="33580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30564" stop="30591"/>
              <exon start="31539" stop="31614"/>
              <exon start="32118" stop="32195"/>
              <exon start="32947" stop="33032"/>
              <exon start="33560" stop="33633"/>
              <exon start="33936" stop="33981"/>
              <exon start="34974" stop="35083"/>
              <exon start="35446" stop="35527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34990" stop="35083"/>
              <exon start="35446" stop="35620"/>
              <exon start="36168" stop="36287"/>
              <exon start="36467" stop="36955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554348" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAG : GTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG : ATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGACCGTGTAGGATCAATGGTGGTTGTTGGTCTTTTGAATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG : GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG : CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG : GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG : ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG : GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG : CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG : GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA : AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACTTATGCCGATGTTGACCGAAGCCTCTGGTTTTATGCCTCATCAAATGTGAGACTCCACGTGGATCATCTAGCAGTCCAGAATAAATTACCAAGT : GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAGCAGCCCCCTAAGACCTGCAGTTACCTTTCTTCCTTTAG : GATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACACAACTTCTGAGACAGTTATCATAGAAATCATCTT</gDNA_template>
            <first_frame> Y  S  F  K  N  L  *  T  T  T  Y  Y  Y  I  I  K  Q  K  K  L  H  K  I  S  T  F  S  E  F  T  S  M  A  T  Q  Y  N  L  S  L  I  I  K  N  P  S  N  E  D  E  F  L  L  V  K  Q  N  P  P  P  K  F  N  D  P  E  Y  D  S  F  S  D  S  P  L  W  D  F  P  S  S  P  L  L  P  L  D  S  P  S  D  N  Q  F  S  I  Q  V  P  E  S  C  S  D  E  V  D  L  S  K  F  D  L  N  S  A  I  H  K  :  V  L  E  Q  V  E  L  E  D  T  P  V  E  W  K  F  M  K  Y  V  Q  E  P  E  F  G  P  G  L  P  V  K  T  I  Y  I  I  G  T  L  G  P  K  N  G  K  L  K   : D  V  E  F  C  K  W  M  T  T  E  G  C  I  S  M  L  A  E  V  K  P  C  N  D  R  V  G  S  M  V  V  V  G  L  L  N  D  S  T  K  S  G  T  W  K  I  P  P  T  L  K  C  Q  :  E  Y  P  L  G  V  K  I  I  P  M  E  S  R  T  A  K  P  F  R  T  T  N  L  I  V  F  L  P  E  C  N  A  N  E  H  D  D  G  F  I  A  H  G  E  A  L  I  V  D  P  G  C  K  S  S  S  Y  E  Q  :  L  K  E  I  I  A  A  L  P  R  K  L  V  V  F  V  T  H  H  H  N  D  H  V  D   : G  L  S  V  V  Q  K  Y  S  P  D  A  R  L  L  A  H  E  N  T  I  R  R  I  R  K   : D  D  W  S  L  P  Y  V  S  V  S  G  S  E  E  I  C  I  G  N  Q  K  L  R  I  I  L  A  P  :  G  H  T  D  G  H  M  A  L  L  H  V  S  T  N  S  L  I  V  G  D  H  C  V  G :   Q  G  S  A  L  L  D  S  A  S  G  G  N  M  Q  :  D  Y  F  Q  T  T  Y  K  F  I  E  L  S  P  H  A  L  I  P  M  H  G  R  T  N  M  W  P  K  H  M  L  C  G  Y  L  K :   N  R  R  N  R  E  S  T  I  L  M  A  I  E  N  G  A  K  T  L  F  D  I  V  A  Y  T  Y  A  D  V  D  R  S  L  W  F  Y  A  S  S  N  V  R  L  H  V  D  H  L  A  V  Q  N  K  L  P  S  :  D  F  S  L  E  N  F  N  R  S  C  A  E  F  A  G  M  V  H  K  I  *  G  N  F  Q  K  A  A  P  *  D  L  Q  L  P  F  F  L  *  :  D  F  S  I  Q  S  F  Q  A  S  Y  G  L  R  F  L  F  R  W  I  L  E  Y  S  S  S  A  F  S  I  K  H  H  T  V  R  A  A  L  L  V  G  T  G  A  L  A  I  G  C  L  A  V  S  F  S  R  K  N  E  L  L  S  R  *  C  K  Q  F  L  L  R  K  A  D  F  V  K  E  V  N  L  P  S  G  S  R  S  C  S  L  S  L  Y  Q  K  L  *  E  K  H  E  D  V  Y  I  S  S  K  I  L  I  D  S  V  V  R  I  T  R  H  H  C  S  A  F  L  I  F  F  C  D  *  R  N  R  L  D  Q  L  E  V  *  D  K  I  I  V  N  G  S  H  N  F  *  D  S  Y  H  R  N  H  L </first_frame>
            <second_frame>  T  A  L  K  I  F  K  Q  Q  P  T  I  I  L  *  N  K  K  N  Y  T  K  F  Q  L  S  V  S  L  L  Q  W  R  L  S  I  I  F  R  *  S  S  R  I  H  Q  M  K  M  N  F  Y  L  L  S  K  T  H  L  L  N  S  T  I  L  S  M  I  L  F  P  I  P  L  Y  G  I  F  L  L  H  H  C  Y  L  L  I  L  L  Q  I  I  N  F  L  Y  K  S  L  N  L  A  Q  M  R  L  I  *  V  N  L  I  L  I  Q  L  F  I  R :   F  *  S  K  W  N  *  R  I  P  Q  L  S  G  N  S  *  S  M  Y  R  S  L  N  L  D  Q  D  C  Q  *  R  R  S  T  S  L  E  L  W  V  L  K  M  E  N  *  R  :  M  L  S  S  A  S  G  *  P  L  K  D  A  L  V  C  L  L  K  *  S  L  A  M  T  V  *  D  Q  W  W  L  L  V  F  *  M  I  Q  Q  N  L  G  H  G  K  F  L  P  P  *  N  V  R :   S  T  L  L  V  L  K  L  Y  L  W  K  V  E  Q  L  N  L  F  V  Q  Q  T  *  L  F  S  C  L  N  A  M  L  M  S  M  M  M  V  L  S  L  M  G  K  H  S  *  *  T  Q  D  V  S  H  L  H  M  N  S :   S  R  K  S  L  L  L  C  R  E  N  *  S  S  L  *  H  I  I  I  M  I  M  L  M  :  V  F  Q  *  S  R  S  T  V  P  M  L  V  F  W  L  M  K  I  R  F  V  E  L  E  K  :  M  I  G  L  S  H  M  F  Q  F  L  D  L  R  K  F  A  L  A  I  R  N  *  E  L  S  *  H  R :   D  I  Q  M  D  I  W  H  C  F  M  L  V  Q  T  R  *  S  *  G  I  I  V  W   : A  K  E  V  L  S  *  I  A  R  L  V  E  I  C  R :   I  T  F  R  Q  H  T  N  S  L  S  S  L  L  M  R  *  F  P  C  T  E  E  L  I  C  G  Q  N  T  C  S  V  G  I  S   : K  T  G  E  T  E  N  Q  P  S  *  W  Q  *  R  M  V  L  K  H  C  L  T  *  L  L  T  L  M  P  M  L  T  E  A  S  G  F  M  P  H  Q  M  *  D  S  T  W  I  I  *  Q  S  R  I  N  Y  Q  V :   T  S  L  *  K  I  S  I  A  V  V  L  S  L  L  A  W  C  I  K  Y  K  E  T  F  R  K  Q  P  P  K  T  C  S  Y  L  S  S  F  R :   I  F  Q  S  K  V  F  R  Q  V  M  G  C  V  S  F  L  G  G  Y  *  N  T  Q  V  V  H  S  Q  *  S  I  T  Q  S  E  R  L  Y  *  S  V  L  E  L  W  P  L  V  A  W  L  Y  H  S  P  E  K  M  N  S  S  L  G  D  A  N  N  S  C  S  G  R  Q  I  S  S  R  K  L  I  Y  R  L  A  P  G  H  V  L  S  H  C  T  R  S  S  R  R  S  M  K  M  F  T  L  V  V  K  Y  S  L  I  V  L  C  A  *  L  A  I  I  V  L  H  F  *  Y  F  F  V  I  K  E  T  D  W  I  N  *  K  C  K  T  R  L  L  L  M  D  H  T  T  S  E  T  V  I  I  E  I  I   </second_frame>
            <third_frame>   Q  L  *  K  S  L  N  N  N  L  L  L  Y  Y  K  T  K  K  T  T  Q  N  F  N  F  Q  *  V  Y  F  N  G  D  S  V  *  S  F  V  N  H  Q  E  S  I  K  *  R  *  I  S  T  C  *  A  K  P  T  S  *  I  Q  R  S  *  V  *  F  F  F  R  F  P  F  M  G  F  S  F  F  T  I  V  T  S  *  F  S  F  R  *  S  I  F  Y  T  S  P  *  I  L  L  R  *  G  *  F  K  *  I  *  S  *  F  S  Y  S  *   : G  S  R  A  S  G  I  R  G  Y  P  S  *  V  E  I  H  E  V  C  T  G  A  *  I  W  T  R  I  A  S  K  D  D  L  H  H  W  N  F  G  S  *  K  W  K  I  K  G :   C  *  V  L  Q  V  D  D  H  *  R  M  H  *  Y  A  C  *  S  E  A  L  Q  *  P  C  R  I  N  G  G  C  W  S  F  E  *  F  N  K  I  W  D  M  E  N  S  S  H  L  E  M  S   : G  V  P  S  W  C  *  N  Y  T  Y  G  K  *  N  S  *  T  F  S  Y  N  K  L  N  C  F  P  A  *  M  Q  C  *  *  A  *  *  W  F  Y  R  S  W  G  S  T  H  S  R  P  R  M  *  V  I  F  I  *  T   : A  Q  G  N  H  C  C  F  A  E  K  T  S  R  L  C  D  T  S  S  *  *  S  C  *  W :   S  F  S  S  P  E  V  Q  S  R  C  S  S  F  G  S  *  K  Y  D  S  S  N  *  K  R :   *  L  V  S  P  I  C  F  S  F  W  I  *  G  N  L  H  W  Q  S  E  I  K  N  Y  L  S  T   : G  T  Y  R  W  T  Y  G  T  A  S  C  *  Y  K  L  V  D  R  R  G  S  L  C  G  :  P  R  K  C  S  L  R  *  R  V  W  W  K  Y  A   : G  L  L  S  D  N  I  Q  I  H  *  A  L  S  S  C  V  D  S  H  A  R  K  N  *  Y  V  A  K  T  H  A  L  W  V  S  Q  :  K  P  E  K  Q  R  I  N  H  L  N  G  N  R  E  W  C  *  N  I  V  *  H  S  C  L  H  L  C  R  C  *  P  K  P  L  V  L  C  L  I  K  C  E  T  P  R  G  S  S  S  S  P  E  *  I  T  K   : *  L  L  F  R  K  F  Q  S  Q  L  C  *  V  C  W  H  G  A  *  N  I  R  K  L  S  E  S  S  P  L  R  P  A  V  T  F  L  P  L   : G  F  F  N  P  K  F  S  G  K  L  W  A  A  F  P  F  *  V  D  I  R  I  L  K  *  C  I  L  N  K  A  S  H  S  Q  S  G  F  T  S  R  Y  W  S  S  G  H  W  L  L  G  C  I  I  L  Q  K  K  *  T  P  L  *  V  M  Q  T  I  L  A  P  E  G  R  F  R  Q  G  S  *  F  T  V  W  L  Q  V  M  F  S  L  I  V  P  E  A  L  G  E  A  *  R  C  L  H  *  *  *  N  T  H  *  *  C  C  A  H  N  S  P  S  L  F  C  I  S  D  I  F  L  *  L  K  K  P  I  G  S  I  R  S  V  R  Q  D  Y  C  *  W  I  T  Q  L  L  R  Q  L  S  *  K  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27012" stop="27347"/>
                    <exon start="28471" stop="28615"/>
                    <exon start="29698" stop="29858"/>
                    <exon start="30412" stop="30591"/>
                    <exon start="31539" stop="31614"/>
                    <exon start="32118" stop="32195"/>
                    <exon start="32947" stop="33032"/>
                    <exon start="33560" stop="33633"/>
                    <exon start="33936" stop="33981"/>
                    <exon start="34974" stop="35083"/>
                    <exon start="35446" stop="35620"/>
                    <exon start="36168" stop="36233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTYYYIIKQKKLHKISTFSEFTSMATQYNLSLIIKNPSNEDEFLLVKQNPPPKFNDPEYDSFSDSPLWDFPSSPLLPLDSPSDNQFSIQVPESCSDEVDLSKFDLNSAIHKVLEQVELEDTPVEWKFMKYVQEPEFGPGLPVKTIYIIGTLGPKNGKLKDVEFCKWMTTEGCISMLAEVKPCNDRVGSMVVVGLLNDSTKSGTWKIPPTLKCQEYPLGVKIIPMESRTAKPFRTTNLIVFLPECNANEHDDGFIAHGEALIVDPGCKSSSYEQLKEIIAALPRKLVVFVTHHHNDHVDGLSVVQKYSPDARLLAHENTIRRIRKDDWSLPYVSVSGSEEICIGNQKLRIILAPGHTDGHMALLHVSTNSLIVGDHCVGQGSALLDSASGGNMQDYFQTTYKFIELSPHALIPMHGRTNMWPKHMLCGYLKNRRNRESTILMAIENGAKTLFDIVAYTYADVDRSLWFYASSNVRLHVDHLAVQNKLPSDFSLENFNRSCAEFAGMVHKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36588" stop="36821"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLELWPLVAWLYHSPEKMNSSLGDANNSCSGRQISSRKLIYRLAPGHVLSHCTRSSRRSMKMFTLVVKYSLIVLCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35596" e_stop="35620"/>
            <exon e_start="36168" e_stop="36249"/>
            <exon e_start="36467" e_stop="36921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.937" e_score="0.988"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35596" e_stop="35620" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35621" i_stop="36167" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="36168" e_stop="36249" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="36250" i_stop="36466" i_length="217"/>
          </intron>
          <exon e_serial="3" e_score="0.897">
            <gDNA_exon_boundary e_start="36467" e_stop="36921" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35596" stop="35620"/>
              <exon start="36168" stop="36249"/>
              <exon start="36467" stop="36921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414235" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAGTCCAGAATAAATTACCAAGT : GACTTCTCTTTAGAAAATTTCAATCGCAGTTGTGCTGAGTTTGCTGGCATGGTGCATAAAATATAAGGAAACTTTCAGAAAG : GATTTTTCAATCCAAAGTTTTCAGGCAAGTTATGGGCTGCGTTTCCTTTTTAGGTGGATATTAGAATACTCAAGTAGTGCATTCTCAATAAAGCATCACACAGTCAGAGCGGCTTTACTAGTCGGTACTGGAGCTCTGGCCATTGGTTGCTTGGCTGTATCATTCTCCAGAAAAAATGAACTCCTCTCTAGGTGATGCAAACAATTCTTGCTCCGGAAGGCAGATTTCGTCAAGGAAGTTAATTTACCGTCTGGCTCCAGGTCATGTTCTCTCTCATTGTACCAGAAGCTCTAGGAGAAGCATGAAGATGTTTACATTAGTAGTAAAATACTCATTGATAGTGTTGTGCGCATAACTCGCCATCATTGTTCTGCATTTCTGATATTTTTTTGTGATTAAAGAAACCGATTGGATCAATTAGAAGTGTAAGACAAGATTATTGTTAATGGATCACA</gDNA_template>
            <first_frame> S  S  P  E  *  I  T  K   : *  L  L  F  R  K  F  Q  S  Q  L  C  *  V  C  W  H  G  A  *  N  I  R  K  L  S  E  R :   I  F  Q  S  K  V  F  R  Q  V  M  G  C  V  S  F  L  G  G  Y  *  N  T  Q  V  V  H  S  Q  *  S  I  T  Q  S  E  R  L  Y  *  S  V  L  E  L  W  P  L  V  A  W  L  Y  H  S  P  E  K  M  N  S  S  L  G  D  A  N  N  S  C  S  G  R  Q  I  S  S  R  K  L  I  Y  R  L  A  P  G  H  V  L  S  H  C  T  R  S  S  R  R  S  M  K  M  F  T  L  V  V  K  Y  S  L  I  V  L  C  A  *  L  A  I  I  V  L  H  F  *  Y  F  F  V  I  K  E  T  D  W  I  N  *  K  C  K  T  R  L  L  L  M  D  H  </first_frame>
            <second_frame>  A  V  Q  N  K  L  P  S  :  D  F  S  L  E  N  F  N  R  S  C  A  E  F  A  G  M  V  H  K  I  *  G  N  F  Q  K   : G  F  F  N  P  K  F  S  G  K  L  W  A  A  F  P  F  *  V  D  I  R  I  L  K  *  C  I  L  N  K  A  S  H  S  Q  S  G  F  T  S  R  Y  W  S  S  G  H  W  L  L  G  C  I  I  L  Q  K  K  *  T  P  L  *  V  M  Q  T  I  L  A  P  E  G  R  F  R  Q  G  S  *  F  T  V  W  L  Q  V  M  F  S  L  I  V  P  E  A  L  G  E  A  *  R  C  L  H  *  *  *  N  T  H  *  *  C  C  A  H  N  S  P  S  L  F  C  I  S  D  I  F  L  *  L  K  K  P  I  G  S  I  R  S  V  R  Q  D  Y  C  *  W  I  T </second_frame>
            <third_frame>   Q  S  R  I  N  Y  Q  V :   T  S  L  *  K  I  S  I  A  V  V  L  S  L  L  A  W  C  I  K  Y  K  E  T  F  R  K  :  D  F  S  I  Q  S  F  Q  A  S  Y  G  L  R  F  L  F  R  W  I  L  E  Y  S  S  S  A  F  S  I  K  H  H  T  V  R  A  A  L  L  V  G  T  G  A  L  A  I  G  C  L  A  V  S  F  S  R  K  N  E  L  L  S  R  *  C  K  Q  F  L  L  R  K  A  D  F  V  K  E  V  N  L  P  S  G  S  R  S  C  S  L  S  L  Y  Q  K  L  *  E  K  H  E  D  V  Y  I  S  S  K  I  L  I  D  S  V  V  R  I  T  R  H  H  C  S  A  F  L  I  F  F  C  D  *  R  N  R  L  D  Q  L  E  V  *  D  K  I  I  V  N  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36181" stop="36249"/>
                    <exon start="36467" stop="36661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISIAVVLSLLAWCIKYKETFRKDFSIQSFQASYGLRFLFRWILEYSSSAFSIKHHTVRAALLVGTGALAIGCLAVSFSRKNELLSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36588" stop="36821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLELWPLVAWLYHSPEKMNSSLGDANNSCSGRQISSRKLIYRLAPGHVLSHCTRSSRRSMKMFTLVVKYSLIVLCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37251" PGL_stop="37848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37251" e_stop="37848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37251" e_stop="37848" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37251" stop="37848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTCTATGCAGAAGGAGGTAAAGAAGCCGTTTCCGATAGACCCTTTGACTCAGAGAAAAAAAAACATCAAAATAGATACTATAGACAACATGACAGAAAAAAAACTTTCTTCAAGGCTCATAATTGCAGCTTTTTACTTTAACTGCAATAAAAACAAAAACCACACCTTGCCTCTTTTCATTTCACATTTTCTTCTTGCCCCATACTAACACTTCCCATGCTCCTTTGCATGTATTCCTCATTTTTACTTACTTTATACATATCATAAATTGAGACCTTTTACTATCACTTTATACATATATTTTATTTTTTTTAGAGAAATGAGTTTCCATCTTGGTACCACCATAGTTCTTACATTATTTGTCTCATTTTCTGCATTACTATTAGGCTTGTTCATCAATTATCAATTCAACAAGATTGTTGTCTATGAAGATTTCTACTTGCCTCACCAATCACCAATTTACAATCTCTCCATCTCTACACATCTTGTTTGTAACTCATCTTCGTCTGATTCTAGTTCTAATAGGACCATGGAGGAGTTGAATGATGTTTGGCACTCGATGAACGATGAAGAACTTATGTGGAGAGCTTCAATG</gDNA_template>
            <first_frame> R  V  Y  A  E  G  G  K  E  A  V  S  D  R  P  F  D  S  E  K  K  K  H  Q  N  R  Y  Y  R  Q  H  D  R  K  K  T  F  F  K  A  H  N  C  S  F  L  L  *  L  Q  *  K  Q  K  P  H  L  A  S  F  H  F  T  F  S  S  C  P  I  L  T  L  P  M  L  L  C  M  Y  S  S  F  L  L  T  L  Y  I  S  *  I  E  T  F  Y  Y  H  F  I  H  I  F  Y  F  F  *  R  N  E  F  P  S  W  Y  H  H  S  S  Y  I  I  C  L  I  F  C  I  T  I  R  L  V  H  Q  L  S  I  Q  Q  D  C  C  L  *  R  F  L  L  A  S  P  I  T  N  L  Q  S  L  H  L  Y  T  S  C  L  *  L  I  F  V  *  F  *  F  *  *  D  H  G  G  V  E  *  C  L  A  L  D  E  R  *  R  T  Y  V  E  S  F  N  </first_frame>
            <second_frame>  E  S  M  Q  K  E  V  K  K  P  F  P  I  D  P  L  T  Q  R  K  K  N  I  K  I  D  T  I  D  N  M  T  E  K  K  L  S  S  R  L  I  I  A  A  F  Y  F  N  C  N  K  N  K  N  H  T  L  P  L  F  I  S  H  F  L  L  A  P  Y  *  H  F  P  C  S  F  A  C  I  P  H  F  Y  L  L  Y  T  Y  H  K  L  R  P  F  T  I  T  L  Y  I  Y  F  I  F  F  R  E  M  S  F  H  L  G  T  T  I  V  L  T  L  F  V  S  F  S  A  L  L  L  G  L  F  I  N  Y  Q  F  N  K  I  V  V  Y  E  D  F  Y  L  P  H  Q  S  P  I  Y  N  L  S  I  S  T  H  L  V  C  N  S  S  S  S  D  S  S  S  N  R  T  M  E  E  L  N  D  V  W  H  S  M  N  D  E  E  L  M  W  R  A  S  M </second_frame>
            <third_frame>   S  L  C  R  R  R  *  R  S  R  F  R  *  T  L  *  L  R  E  K  K  T  S  K  *  I  L  *  T  T  *  Q  K  K  N  F  L  Q  G  S  *  L  Q  L  F  T  L  T  A  I  K  T  K  T  T  P  C  L  F  S  F  H  I  F  F  L  P  H  T  N  T  S  H  A  P  L  H  V  F  L  I  F  T  Y  F  I  H  I  I  N  *  D  L  L  L  S  L  Y  T  Y  I  L  F  F  L  E  K  *  V  S  I  L  V  P  P  *  F  L  H  Y  L  S  H  F  L  H  Y  Y  *  A  C  S  S  I  I  N  S  T  R  L  L  S  M  K  I  S  T  C  L  T  N  H  Q  F  T  I  S  P  S  L  H  I  L  F  V  T  H  L  R  L  I  L  V  L  I  G  P  W  R  S  *  M  M  F  G  T  R  *  T  M  K  N  L  C  G  E  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37462" stop="37848"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFPCSFACIPHFYLLYTYHKLRPFTITLYIYFIFFREMSFHLGTTIVLTLFVSFSALLLGLFINYQFNKIVVYEDFYLPHQSPIYNLSISTHLVCNSSSSDSSSNRTMEELNDVWHSMNDEELMWRASM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37252" stop="37461"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESMQKEVKKPFPIDPLTQRKKNIKIDTIDNMTEKKLSSRLIIAAFYFNCNKNKNHTLPLFISHFLLAPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43215" PGL_stop="46743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43215" e_stop="43737"/>
            <exon e_start="45758" e_stop="46512"/>
            <exon e_start="46715" e_stop="46743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.759"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="43215" e_stop="43737" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43738" i_stop="45757" i_length="2020"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="45758" e_stop="46512" e_length="755"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46513" i_stop="46714" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="0.759">
            <gDNA_exon_boundary e_start="46715" e_stop="46743" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43215" stop="43678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43217" stop="43737"/>
              <exon start="45758" stop="45949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43217" stop="43462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45943" stop="46512"/>
              <exon start="46715" stop="46743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46162" stop="46415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAAATCATTCAACACTCCAATAAATATTATAAATCTCTTTTCTTCTTTTTTCTTATTTGCTTGTGGTATAACATGTGGTATTATTTTCACTTTTTATTTCAAAAACTTTAGTGTTAACTTACAAGTCATCAATGGTCAAATTTTAAACTTTTCTTCTTTTAATTCACAATCGTTATCACCACCACCACCACCAGCATCATCATCATCGCGATCGATAATTCCTCGATTAGGGTTGAATGAGTATATCAAGCCAATTAATGTTGAACATGATATGAGTGATGAAGAGTTGTTATGGAGAAGTTCAATGGTGCCAAAAGTTAAAGATTTTCCATTTAAAATACAACCAAAAGTGGCTTTCATGTTTTTAACAAGAGGGCCAATTTTGTTATCACCACTTTGGGAGCTATTTTTTAAAGGAAATGAAGGATTTTATTCAATTTATATACATTCTAATCCTTCTTATAATCAATCACAAGTTGATGAAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAG : GAAGTTGAATGGGGCAAAATAAATATGGTTGAGGCTGAAAAAAGATTACTGGCAAATGCCCTTGTCGATATCTCTAATCAAAGATTTGTTCTTCTCTCTGAGGCATGTATTCCCTTGTTCAATTTCTCCACTATCTACACTCACCTAATGAACTCGACGAAAAATTTCGTCGAGACTTATGATCTGCCTGGCCCAGTGGGCCGGGGTCGGTACCATCCACGGATGAGCCCGACGATCAAACTTGCGCAATGGAGAAAAGGTTCTCAGTGGTTCGAAATGGACAGAGATCTCGCTTTAGAGGTTGTTTCGGACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTG : ATTTATGATATAAAAATACAATAAAAAAA</gDNA_template>
            <first_frame> Y  *  I  I  Q  H  S  N  K  Y  Y  K  S  L  F  F  F  F  L  I  C  L  W  Y  N  M  W  Y  Y  F  H  F  L  F  Q  K  L  *  C  *  L  T  S  H  Q  W  S  N  F  K  L  F  F  F  *  F  T  I  V  I  T  T  T  T  T  S  I  I  I  I  A  I  D  N  S  S  I  R  V  E  *  V  Y  Q  A  N  *  C  *  T  *  Y  E  *  *  R  V  V  M  E  K  F  N  G  A  K  S  *  R  F  S  I  *  N  T  T  K  S  G  F  H  V  F  N  K  R  A  N  F  V  I  T  T  L  G  A  I  F  *  R  K  *  R  I  L  F  N  L  Y  T  F  *  S  F  L  *  S  I  T  S  *  *  K  F  Y  F  S  W  K  E  N  P  *  Q   : G  S  *  M  G  Q  N  K  Y  G  *  G  *  K  K  I  T  G  K  C  P  C  R  Y  L  *  S  K  I  C  S  S  L  *  G  M  Y  S  L  V  Q  F  L  H  Y  L  H  S  P  N  E  L  D  E  K  F  R  R  D  L  *  S  A  W  P  S  G  P  G  S  V  P  S  T  D  E  P  D  D  Q  T  C  A  M  E  K  R  F  S  V  V  R  N  G  Q  R  S  R  F  R  G  C  F  G  P  D  V  F  L  G  F  Q  E  T  L  *  G  L  V  L  C  *  *  T  F  F  T  N  F  R  K  H  E  I  R  K  E  E  Y  G  S  N  F  D  L  G  R  L  V  Q  G  R  A  P  P  D  P  F  L  *  V  G  Y  K  C  G  V  F  E  K  T  *  E  *  E  *  L  *  V  Q  W  *  E  D  K  Y  L  S  F  V  C  K  E  I  Y  T  T  C  F  E  *  I  I  D  F  C  T  K  G  D  A  I  *  P  L  I  *  D  *  L  T  Q  I  D  V  H  G  E  K  K  K  S  I  L  C  T  *  S  N  D  Q  C  V  H  L  L  I  Q  S  L  I  L  :  I  Y  D  I  K  I  Q  *  K   </first_frame>
            <second_frame>  I  K  S  F  N  T  P  I  N  I  I  N  L  F  S  S  F  F  L  F  A  C  G  I  T  C  G  I  I  F  T  F  Y  F  K  N  F  S  V  N  L  Q  V  I  N  G  Q  I  L  N  F  S  S  F  N  S  Q  S  L  S  P  P  P  P  P  A  S  S  S  S  R  S  I  I  P  R  L  G  L  N  E  Y  I  K  P  I  N  V  E  H  D  M  S  D  E  E  L  L  W  R  S  S  M  V  P  K  V  K  D  F  P  F  K  I  Q  P  K  V  A  F  M  F  L  T  R  G  P  I  L  L  S  P  L  W  E  L  F  F  K  G  N  E  G  F  Y  S  I  Y  I  H  S  N  P  S  Y  N  Q  S  Q  V  D  E  S  S  I  F  H  G  R  R  I  P  S  K  :  E  V  E  W  G  K  I  N  M  V  E  A  E  K  R  L  L  A  N  A  L  V  D  I  S  N  Q  R  F  V  L  L  S  E  A  C  I  P  L  F  N  F  S  T  I  Y  T  H  L  M  N  S  T  K  N  F  V  E  T  Y  D  L  P  G  P  V  G  R  G  R  Y  H  P  R  M  S  P  T  I  K  L  A  Q  W  R  K  G  S  Q  W  F  E  M  D  R  D  L  A  L  E  V  V  S  D  Q  T  Y  F  S  V  F  K  K  H  C  K  G  S  C  Y  A  D  E  H  F  L  P  T  F  V  S  M  K  F  E  K  R  N  T  G  R  T  L  T  W  V  D  W  S  K  G  G  P  H  P  T  R  F  Y  R  S  D  I  S  V  E  F  L  K  K  L  R  S  E  S  S  C  E  Y  N  G  E  K  T  S  I  C  H  L  F  A  R  K  F  T  P  H  A  L  S  R  L  L  I  F  A  P  K  V  M  Q  F  N  H  *  F  R  I  N  *  H  K  L  M  Y  M  G  K  K  K  N  Q  F  F  V  L  D  Q  M  I  N  V  F  I  Y  *  F  S  L  *  F  * :   F  M  I  *  K  Y  N  K  K  </second_frame>
            <third_frame>   L  N  H  S  T  L  Q  *  I  L  *  I  S  F  L  L  F  S  Y  L  L  V  V  *  H  V  V  L  F  S  L  F  I  S  K  T  L  V  L  T  Y  K  S  S  M  V  K  F  *  T  F  L  L  L  I  H  N  R  Y  H  H  H  H  H  Q  H  H  H  H  R  D  R  *  F  L  D  *  G  *  M  S  I  S  S  Q  L  M  L  N  M  I  *  V  M  K  S  C  Y  G  E  V  Q  W  C  Q  K  L  K  I  F  H  L  K  Y  N  Q  K  W  L  S  C  F  *  Q  E  G  Q  F  C  Y  H  H  F  G  S  Y  F  L  K  E  M  K  D  F  I  Q  F  I  Y  I  L  I  L  L  I  I  N  H  K  L  M  K  V  L  F  F  M  E  G  E  S  L  A  R :   K  L  N  G  A  K  *  I  W  L  R  L  K  K  D  Y  W  Q  M  P  L  S  I  S  L  I  K  D  L  F  F  S  L  R  H  V  F  P  C  S  I  S  P  L  S  T  L  T  *  *  T  R  R  K  I  S  S  R  L  M  I  C  L  A  Q  W  A  G  V  G  T  I  H  G  *  A  R  R  S  N  L  R  N  G  E  K  V  L  S  G  S  K  W  T  E  I  S  L  *  R  L  F  R  T  R  R  I  S  R  F  S  R  N  T  V  R  A  R  A  M  L  M  N  I  F  Y  Q  L  S  *  A  *  N  S  K  R  G  I  R  V  E  L  *  L  G  S  I  G  P  R  A  G  P  T  R  P  V  F  I  G  R  I  *  V  W  S  F  *  K  N  L  G  V  R  V  V  V  S  T  M  V  R  R  Q  V  F  V  I  C  L  Q  G  N  L  H  H  M  L  *  V  D  Y  *  F  L  H  Q  R  *  C  N  L  T  I  N  L  G  L  I  N  T  N  *  C  T  W  G  K  K  K  I  N  S  L  Y  L  I  K  *  S  M  C  S  F  I  N  S  V  F  D  F   : D  L  *  Y  K  N  T  I  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43216" stop="43737"/>
                    <exon start="45758" stop="46402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSFNTPINIINLFSSFFLFACGITCGIIFTFYFKNFSVNLQVINGQILNFSSFNSQSLSPPPPPASSSSRSIIPRLGLNEYIKPINVEHDMSDEELLWRSSMVPKVKDFPFKIQPKVAFMFLTRGPILLSPLWELFFKGNEGFYSIYIHSNPSYNQSQVDESSIFHGRRIPSKEVEWGKINMVEAEKRLLANALVDISNQRFVLLSEACIPLFNFSTIYTHLMNSTKNFVETYDLPGPVGRGRYHPRMSPTIKLAQWRKGSQWFEMDRDLALEVVSDQTYFSVFKKHCKGSCYADEHFLPTFVSMKFEKRNTGRTLTWVDWSKGGPHPTRFYRSDISVEFLKKLRSESSCEYNGEKTSICHLFARKFTPHALSRLLIFAPKVMQFNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43700" e_stop="44343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43700" e_stop="44343" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43700" stop="44343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43700" stop="44230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43701" stop="44241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTCTATTTTTCATGGAAGGAGAATCCCTAGCAAGGTTAGTTTCATATAAATCATATAACTTACTTTTTTTCTCTTTAATATTTTGGATTTAATATTTAAGCTGAGAATGATAGATTGTATACGAGAATTTTTGATTTACATTAGAATTGACTCAAATTAAATTTATCAGATAGTTACTACTCTATCACGATCTTTGATAAGTAAAAAGTACTTAAGAGATCGAGGAGATAGGTTCGAACCAAATGCATCACTAATCCTCGAAAAATATTGTGCACATTAATAAAGCAAAAAAACACTTGATTAGAGAGATAAAATGATCGTTTAGATGAATATTTCTTAAAGTTATGAAATGTATTTTGATATGAAGACAAAAATCCTTGTTTCATTTGTTCAAATTTTGACGAATAAAACTATCTGATAAATCTATTAGTTGGATTAGAAATAGCATGTACTATGTGAAATTTAGTATTAGTTAATCCTCCGAACACCACGATTATAAAAATAATAATATGAATAATTGTATTATTTTTTTCTATATAAAATAATGAGGCTGCTGGAATTTATTTGAGGTTATAAAACTCTACTTTGGTTTATAATATTTGTCACTTTATTGTAGTACATTGAAATTGATGAATCATTT</gDNA_template>
            <first_frame> K  V  L  F  F  M  E  G  E  S  L  A  R  L  V  S  Y  K  S  Y  N  L  L  F  F  S  L  I  F  W  I  *  Y  L  S  *  E  *  *  I  V  Y  E  N  F  *  F  T  L  E  L  T  Q  I  K  F  I  R  *  L  L  L  Y  H  D  L  *  *  V  K  S  T  *  E  I  E  E  I  G  S  N  Q  M  H  H  *  S  S  K  N  I  V  H  I  N  K  A  K  K  H  L  I  R  E  I  K  *  S  F  R  *  I  F  L  K  V  M  K  C  I  L  I  *  R  Q  K  S  L  F  H  L  F  K  F  *  R  I  K  L  S  D  K  S  I  S  W  I  R  N  S  M  Y  Y  V  K  F  S  I  S  *  S  S  E  H  H  D  Y  K  N  N  N  M  N  N  C  I  I  F  F  Y  I  K  *  *  G  C  W  N  L  F  E  V  I  K  L  Y  F  G  L  *  Y  L  S  L  Y  C  S  T  L  K  L  M  N  H   </first_frame>
            <second_frame>  K  F  Y  F  S  W  K  E  N  P  *  Q  G  *  F  H  I  N  H  I  T  Y  F  F  S  L  *  Y  F  G  F  N  I  *  A  E  N  D  R  L  Y  T  R  I  F  D  L  H  *  N  *  L  K  L  N  L  S  D  S  Y  Y  S  I  T  I  F  D  K  *  K  V  L  K  R  S  R  R  *  V  R  T  K  C  I  T  N  P  R  K  I  L  C  T  L  I  K  Q  K  N  T  *  L  E  R  *  N  D  R  L  D  E  Y  F  L  K  L  *  N  V  F  *  Y  E  D  K  N  P  C  F  I  C  S  N  F  D  E  *  N  Y  L  I  N  L  L  V  G  L  E  I  A  C  T  M  *  N  L  V  L  V  N  P  P  N  T  T  I  I  K  I  I  I  *  I  I  V  L  F  F  S  I  *  N  N  E  A  A  G  I  Y  L  R  L  *  N  S  T  L  V  Y  N  I  C  H  F  I  V  V  H  *  N  *  *  I  I  </second_frame>
            <third_frame>   S  S  I  F  H  G  R  R  I  P  S  K  V  S  F  I  *  I  I  *  L  T  F  F  L  F  N  I  L  D  L  I  F  K  L  R  M  I  D  C  I  R  E  F  L  I  Y  I  R  I  D  S  N  *  I  Y  Q  I  V  T  T  L  S  R  S  L  I  S  K  K  Y  L  R  D  R  G  D  R  F  E  P  N  A  S  L  I  L  E  K  Y  C  A  H  *  *  S  K  K  T  L  D  *  R  D  K  M  I  V  *  M  N  I  S  *  S  Y  E  M  Y  F  D  M  K  T  K  I  L  V  S  F  V  Q  I  L  T  N  K  T  I  *  *  I  Y  *  L  D  *  K  *  H  V  L  C  E  I  *  Y  *  L  I  L  R  T  P  R  L  *  K  *  *  Y  E  *  L  Y  Y  F  F  L  Y  K  I  M  R  L  L  E  F  I  *  G  Y  K  T  L  L  W  F  I  I  F  V  T  L  L  *  Y  I  E  I  D  E  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0118J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46068" e_stop="46709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="46068" e_stop="46709" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46068" stop="46709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46162" stop="46415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAGACGTATTTCTCGGTTTTCAAGAAACACTGTAAGGGCTCGTGCTATGCTGATGAACATTTTTTACCAACTTTCGTAAGCATGAAATTCGAAAAGAGGAATACGGGTCGAACTTTGACTTGGGTCGATTGGTCCAAGGGCGGGCCCCACCCGACCCGTTTTTATAGGTCGGATATAAGTGTGGAGTTTTTGAAAAAACTTAGGAGTGAGAGTAGTTGTGAGTACAATGGTGAGAAGACAAGTATTTGTCATTTGTTTGCAAGGAAATTTACACCACATGCTTTGAGTAGATTATTGATTTTTGCACCAAAGGTGATGCAATTTAACCATTAATTTAGGATTAATTAACACAAATTGATGTACATGGGGAAAAAAAAAAATCAATTCTTTGTACTTGATCAAATGATCAATGTGTTCATTTATTAATTCAGTCTTTGATTTTGATTTTTTCCTTTCTTATTTTTTACTCTTGTAAAAAAGCAAATGTGAGATAGGTAAGAATTTCATTTTTTTTTGTGTAATAGAGAAAATGATGAGAAGTGTCATGCGATAATATTTATACGTGTATTTAGGTTATATCATGTATTTTCATCTTTTCTATATATATATATATATTGTATCATTTGTTTTCGTATAATTT</gDNA_template>
            <first_frame> T  R  R  I  S  R  F  S  R  N  T  V  R  A  R  A  M  L  M  N  I  F  Y  Q  L  S  *  A  *  N  S  K  R  G  I  R  V  E  L  *  L  G  S  I  G  P  R  A  G  P  T  R  P  V  F  I  G  R  I  *  V  W  S  F  *  K  N  L  G  V  R  V  V  V  S  T  M  V  R  R  Q  V  F  V  I  C  L  Q  G  N  L  H  H  M  L  *  V  D  Y  *  F  L  H  Q  R  *  C  N  L  T  I  N  L  G  L  I  N  T  N  *  C  T  W  G  K  K  K  I  N  S  L  Y  L  I  K  *  S  M  C  S  F  I  N  S  V  F  D  F  D  F  F  L  S  Y  F  L  L  L  *  K  S  K  C  E  I  G  K  N  F  I  F  F  C  V  I  E  K  M  M  R  S  V  M  R  *  Y  L  Y  V  Y  L  G  Y  I  M  Y  F  H  L  F  Y  I  Y  I  Y  I  V  S  F  V  F  V  *  F </first_frame>
            <second_frame>  P  D  V  F  L  G  F  Q  E  T  L  *  G  L  V  L  C  *  *  T  F  F  T  N  F  R  K  H  E  I  R  K  E  E  Y  G  S  N  F  D  L  G  R  L  V  Q  G  R  A  P  P  D  P  F  L  *  V  G  Y  K  C  G  V  F  E  K  T  *  E  *  E  *  L  *  V  Q  W  *  E  D  K  Y  L  S  F  V  C  K  E  I  Y  T  T  C  F  E  *  I  I  D  F  C  T  K  G  D  A  I  *  P  L  I  *  D  *  L  T  Q  I  D  V  H  G  E  K  K  K  S  I  L  C  T  *  S  N  D  Q  C  V  H  L  L  I  Q  S  L  I  L  I  F  S  F  L  I  F  Y  S  C  K  K  A  N  V  R  *  V  R  I  S  F  F  F  V  *  *  R  K  *  *  E  V  S  C  D  N  I  Y  T  C  I  *  V  I  S  C  I  F  I  F  S  I  Y  I  Y  I  L  Y  H  L  F  S  Y  N   </second_frame>
            <third_frame>   Q  T  Y  F  S  V  F  K  K  H  C  K  G  S  C  Y  A  D  E  H  F  L  P  T  F  V  S  M  K  F  E  K  R  N  T  G  R  T  L  T  W  V  D  W  S  K  G  G  P  H  P  T  R  F  Y  R  S  D  I  S  V  E  F  L  K  K  L  R  S  E  S  S  C  E  Y  N  G  E  K  T  S  I  C  H  L  F  A  R  K  F  T  P  H  A  L  S  R  L  L  I  F  A  P  K  V  M  Q  F  N  H  *  F  R  I  N  *  H  K  L  M  Y  M  G  K  K  K  N  Q  F  F  V  L  D  Q  M  I  N  V  F  I  Y  *  F  S  L  *  F  *  F  F  P  F  L  F  F  T  L  V  K  K  Q  M  *  D  R  *  E  F  H  F  F  L  C  N  R  E  N  D  E  K  C  H  A  I  I  F  I  R  V  F  R  L  Y  H  V  F  S  S  F  L  Y  I  Y  I  Y  C  I  I  C  F  R  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46070" stop="46402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYFSVFKKHCKGSCYADEHFLPTFVSMKFEKRNTGRTLTWVDWSKGGPHPTRFYRSDISVEFLKKLRSESSCEYNGEKTSICHLFARKFTPHALSRLLIFAPKVMQFNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45008" e_stop="45657"/>
            <exon e_start="46594" e_stop="46614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.767" e_score="1.000"/>
          <exon-only e_score="0.524"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45008" e_stop="45657" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.767">
            <gDNA_intron_boundary i_start="45658" i_stop="46593" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="0.524">
            <gDNA_exon_boundary e_start="46594" e_stop="46614" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45008" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45083" stop="45657"/>
              <exon start="46594" stop="46614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTAGTATTTTTAAAAAACAACATACGTTTCATTAAAGAAAAAATAAAACGTATATTTCAATAATTCTTTTCTAAATTATTCCTTTTTATCAAGTTCCCTAAATTATTTAAGAAAGCCTAATTTACTCTTTTTTTTTAAATTACTATTTCAATATTTTTTTCCATTTATGTCAGATTTTCTCTGACAAATCATTGATTTTATGGCCTCTTTGTTTGGATACATAGTTGTTTATAATATTAAATGGGAACTGTAAAACCATGTGTCCTTTAATGAGAAGCAAACTACTCATGCTCCTTGTTAGATTTTTTGGTTATCCCACCAAATATTCCGTATTCGTTTTGAGATCTAACTAATATAAATTACGTTAAAAAAGTTTATTTTAAAAATTAAATGTTTCCTACCTAATGCGTCTTAATCCATGTGTAGAATTTGAATACGAAATCTTAATTACTCTTTTAGTATATAATTTATCAGCATTATCTGTTATCTGTTTAAGATCCGTTTGATCTGAATTCTAAGACAAAAATAGTACCACCACCAGTTTATTTTATTTTTAGCCATATATGAAATGAAATTGGACCTACACTCAAACTTTTTCTGGTGGAAAAAAACTTATAAATGCTTCTAACTACCCAAAAAAAAAAAAA : AGAAAATGATGAGAAGTGTCA</gDNA_template>
            <first_frame> V  L  V  F  L  K  N  N  I  R  F  I  K  E  K  I  K  R  I  F  Q  *  F  F  S  K  L  F  L  F  I  K  F  P  K  L  F  K  K  A  *  F  T  L  F  F  *  I  T  I  S  I  F  F  S  I  Y  V  R  F  S  L  T  N  H  *  F  Y  G  L  F  V  W  I  H  S  C  L  *  Y  *  M  G  T  V  K  P  C  V  L  *  *  E  A  N  Y  S  C  S  L  L  D  F  L  V  I  P  P  N  I  P  Y  S  F  *  D  L  T  N  I  N  Y  V  K  K  V  Y  F  K  N  *  M  F  P  T  *  C  V  L  I  H  V  *  N  L  N  T  K  S  *  L  L  F  *  Y  I  I  Y  Q  H  Y  L  L  S  V  *  D  P  F  D  L  N  S  K  T  K  I  V  P  P  P  V  Y  F  I  F  S  H  I  *  N  E  I  G  P  T  L  K  L  F  L  V  E  K  N  L  *  M  L  L  T  T  Q  K  K  K  K :   E  N  D  E  K  C   </first_frame>
            <second_frame>  F  *  Y  F  *  K  T  T  Y  V  S  L  K  K  K  *  N  V  Y  F  N  N  S  F  L  N  Y  S  F  L  S  S  S  L  N  Y  L  R  K  P  N  L  L  F  F  F  K  L  L  F  Q  Y  F  F  P  F  M  S  D  F  L  *  Q  I  I  D  F  M  A  S  L  F  G  Y  I  V  V  Y  N  I  K  W  E  L  *  N  H  V  S  F  N  E  K  Q  T  T  H  A  P  C  *  I  F  W  L  S  H  Q  I  F  R  I  R  F  E  I  *  L  I  *  I  T  L  K  K  F  I  L  K  I  K  C  F  L  P  N  A  S  *  S  M  C  R  I  *  I  R  N  L  N  Y  S  F  S  I  *  F  I  S  I  I  C  Y  L  F  K  I  R  L  I  *  I  L  R  Q  K  *  Y  H  H  Q  F  I  L  F  L  A  I  Y  E  M  K  L  D  L  H  S  N  F  F  W  W  K  K  T  Y  K  C  F  *  L  P  K  K  K  K   : K  K  M  M  R  S  V  </second_frame>
            <third_frame>   F  S  I  F  K  K  Q  H  T  F  H  *  R  K  N  K  T  Y  I  S  I  I  L  F  *  I  I  P  F  Y  Q  V  P  *  I  I  *  E  S  L  I  Y  S  F  F  L  N  Y  Y  F  N  I  F  F  H  L  C  Q  I  F  S  D  K  S  L  I  L  W  P  L  C  L  D  T  *  L  F  I  I  L  N  G  N  C  K  T  M  C  P  L  M  R  S  K  L  L  M  L  L  V  R  F  F  G  Y  P  T  K  Y  S  V  F  V  L  R  S  N  *  Y  K  L  R  *  K  S  L  F  *  K  L  N  V  S  Y  L  M  R  L  N  P  C  V  E  F  E  Y  E  I  L  I  T  L  L  V  Y  N  L  S  A  L  S  V  I  C  L  R  S  V  *  S  E  F  *  D  K  N  S  T  T  T  S  L  F  Y  F  *  P  Y  M  K  *  N  W  T  Y  T  Q  T  F  S  G  G  K  K  L  I  N  A  S  N  Y  P  K  K  K  K  :  R  K  *  *  E  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0118J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="49154" PGL_stop="48763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49154" e_stop="48763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49154" e_stop="48763" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49154" stop="48769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313749" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49148" stop="48876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49110" stop="48769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313750" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48961" stop="48763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48961" stop="48763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48950" stop="48763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGATGGGTGCAATCCGTGGTGAGGGAAGAATGGACCGCGGAAGTGTTCGATCTGGAGTTGATGAGGTATAAGGACATCGAGGAAGAAATGGTAGGGCTATTGCAGATAGCTATGGCATGCACTTCAACATCACCAGATCAAAGGCCTAAAATAAATTATGTTGTGAAAATGATTGAAGAGTTGAGAGGTGTTGAAGTTTCACCTTCTCATGACACTGCTACTGATTCTGTTTCTGACTCTCCTGCTGTTTCTGAAGATAATACCTGTGGTGCAGCTAGTCAGTAGTGACAATTTTTTTTTACTAGTTTGTTATTCTGAGTTATGTAAATTAACCTCTTATTTTTAATCTATAAGAGAGAATTTAGGAGTAAGTTTTCATAAAAACTGAAA</gDNA_template>
            <first_frame> Q  D  G  C  N  P  W  *  G  K  N  G  P  R  K  C  S  I  W  S  *  *  G  I  R  T  S  R  K  K  W  *  G  Y  C  R  *  L  W  H  A  L  Q  H  H  Q  I  K  G  L  K  *  I  M  L  *  K  *  L  K  S  *  E  V  L  K  F  H  L  L  M  T  L  L  L  I  L  F  L  T  L  L  L  F  L  K  I  I  P  V  V  Q  L  V  S  S  D  N  F  F  L  L  V  C  Y  S  E  L  C  K  L  T  S  Y  F  *  S  I  R  E  N  L  G  V  S  F  H  K  N  *   </first_frame>
            <second_frame>  K  M  G  A  I  R  G  E  G  R  M  D  R  G  S  V  R  S  G  V  D  E  V  *  G  H  R  G  R  N  G  R  A  I  A  D  S  Y  G  M  H  F  N  I  T  R  S  K  A  *  N  K  L  C  C  E  N  D  *  R  V  E  R  C  *  S  F  T  F  S  *  H  C  Y  *  F  C  F  *  L  S  C  C  F  *  R  *  Y  L  W  C  S  *  S  V  V  T  I  F  F  Y  *  F  V  I  L  S  Y  V  N  *  P  L  I  F  N  L  *  E  R  I  *  E  *  V  F  I  K  T  E  </second_frame>
            <third_frame>   R  W  V  Q  S  V  V  R  E  E  W  T  A  E  V  F  D  L  E  L  M  R  Y  K  D  I  E  E  E  M  V  G  L  L  Q  I  A  M  A  C  T  S  T  S  P  D  Q  R  P  K  I  N  Y  V  V  K  M  I  E  E  L  R  G  V  E  V  S  P  S  H  D  T  A  T  D  S  V  S  D  S  P  A  V  S  E  D  N  T  C  G  A  A  S  Q  *  *  Q  F  F  F  T  S  L  L  F  *  V  M  *  I  N  L  L  F  L  I  Y  K  R  E  F  R  S  K  F  S  *  K  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49152" stop="48868"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTSTSPDQRPKINYVVKMIEELRGVEVSPSHDTATDSVSDSPAVSEDNTCGAASQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52584" PGL_stop="51279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52584" e_stop="51279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52584" e_stop="51279" e_length="1306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="52086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52583" stop="51973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52517" stop="52105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52195" stop="51620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51814" stop="51279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATTACACTTTTCTCTCATTCTTCTTCCTCTTCACCCTTCTTGAATCTACCCCAAACCCAGATATTGCGCCATTGCTAGCTTTCAAATCAGCTTCAGATGAAACAAACTCACTTTACAACTGGAACTCATCAACTGACCCCTGTTCTTGGACTGGTGTATCTTGTCTTAACAATAGGGTGTCAAGACTTGTTCTTGAAGGTCTTAATCTAAAAGGGTCTTTTCAGAATCTGGTGTTTCTCAAAGAGTTGAGAGTATTGAGCTTGAAATATAATAATTTTTCTGGTTCTGTTCCGAATCTTTCGAACCTTACTGCTTTGAAGCTGTTGTTTCTTTCACATAATGAGCTTTCTGGGGAGTTCTCTGAGTCGTTAACCTCGCTTTTTAAGCTTTATAGACTTGATCTGTCGTATAATAAGTTTTCCGGGGAGATTCCGGCTAAGGTCAATCATTTGACACATTTGCTTACTCTTCGTCTTGAAGGAAATGGGTTTTCCGGTGAGATTTCTGGGGTTAATCTACCTAATCTTCAAGAGTTTAACGTTTCCGGTAACAAACTCGTCGGAGAAATACCCCTTTCTCTATCTCGTTTCCCGGTATCTGCATTTTCGAAGAACCGGGTTCTCTGTGGTTCTCCGTTGCCTAACTGTACGGCGGAGGTTCCTCGTGAACCGTCGCCGTCGACAGGAGCAATAGCTTCTCCGGTTAGTCCTAAAACTACCGTTGCATCTTCTCCGAGCTCATTGCCGGTGACATCTGCAACTTTGAGTCCCAAAAATACCCATCATAGTAGTGGTAAAATGAGCTCATTAGCAATAATCGCTATCATACTAGGTGATGTGTTGGTTCTGTGTGTTGTGTGTATTTTTCTCTACTGTTTCTTCTGCATTAGGAAAGTTTCTTCACAGAAGAATGGGTCACACATTCTTGAAGGTGAGAAGATTGTATACTCGTCTAGCCCGTATCCTAATACGGGCCAGACGAGTGGGTTCGAGAGAGGAAAAATGGTGTTTTTCGAAGGGGCGAAGAGGTTTGAGCTTGAGGATTTGTTGAGAGCTTCAGCTGAGATGTTGGGAAAAGGAGGATTTGGGACTGCTTATAAGGCTGTGTTGGATGATGGAAATGTTGTGGCTGTGAAAAGATTGAAAGAATTGAATGTTTGTGGGAAAAGAGAATTTGAGCAACAAATGGAAGTTTTAGGAAGACTTAGACACCCAAATTTGGTTAGTTTGAAAGCATATTACTTTGCTAGAGATGAGAAGTTGTTGGTGTATGAGTTCATGACTAATGGCAACTTGTTTTGGC</gDNA_template>
            <first_frame> L  H  Y  T  F  L  S  F  F  F  L  F  T  L  L  E  S  T  P  N  P  D  I  A  P  L  L  A  F  K  S  A  S  D  E  T  N  S  L  Y  N  W  N  S  S  T  D  P  C  S  W  T  G  V  S  C  L  N  N  R  V  S  R  L  V  L  E  G  L  N  L  K  G  S  F  Q  N  L  V  F  L  K  E  L  R  V  L  S  L  K  Y  N  N  F  S  G  S  V  P  N  L  S  N  L  T  A  L  K  L  L  F  L  S  H  N  E  L  S  G  E  F  S  E  S  L  T  S  L  F  K  L  Y  R  L  D  L  S  Y  N  K  F  S  G  E  I  P  A  K  V  N  H  L  T  H  L  L  T  L  R  L  E  G  N  G  F  S  G  E  I  S  G  V  N  L  P  N  L  Q  E  F  N  V  S  G  N  K  L  V  G  E  I  P  L  S  L  S  R  F  P  V  S  A  F  S  K  N  R  V  L  C  G  S  P  L  P  N  C  T  A  E  V  P  R  E  P  S  P  S  T  G  A  I  A  S  P  V  S  P  K  T  T  V  A  S  S  P  S  S  L  P  V  T  S  A  T  L  S  P  K  N  T  H  H  S  S  G  K  M  S  S  L  A  I  I  A  I  I  L  G  D  V  L  V  L  C  V  V  C  I  F  L  Y  C  F  F  C  I  R  K  V  S  S  Q  K  N  G  S  H  I  L  E  G  E  K  I  V  Y  S  S  S  P  Y  P  N  T  G  Q  T  S  G  F  E  R  G  K  M  V  F  F  E  G  A  K  R  F  E  L  E  D  L  L  R  A  S  A  E  M  L  G  K  G  G  F  G  T  A  Y  K  A  V  L  D  D  G  N  V  V  A  V  K  R  L  K  E  L  N  V  C  G  K  R  E  F  E  Q  Q  M  E  V  L  G  R  L  R  H  P  N  L  V  S  L  K  A  Y  Y  F  A  R  D  E  K  L  L  V  Y  E  F  M  T  N  G  N  L  F  W  </first_frame>
            <second_frame>  S  I  T  L  F  S  H  S  S  S  S  S  P  F  L  N  L  P  Q  T  Q  I  L  R  H  C  *  L  S  N  Q  L  Q  M  K  Q  T  H  F  T  T  G  T  H  Q  L  T  P  V  L  G  L  V  Y  L  V  L  T  I  G  C  Q  D  L  F  L  K  V  L  I  *  K  G  L  F  R  I  W  C  F  S  K  S  *  E  Y  *  A  *  N  I  I  I  F  L  V  L  F  R  I  F  R  T  L  L  L  *  S  C  C  F  F  H  I  M  S  F  L  G  S  S  L  S  R  *  P  R  F  L  S  F  I  D  L  I  C  R  I  I  S  F  P  G  R  F  R  L  R  S  I  I  *  H  I  C  L  L  F  V  L  K  E  M  G  F  P  V  R  F  L  G  L  I  Y  L  I  F  K  S  L  T  F  P  V  T  N  S  S  E  K  Y  P  F  L  Y  L  V  S  R  Y  L  H  F  R  R  T  G  F  S  V  V  L  R  C  L  T  V  R  R  R  F  L  V  N  R  R  R  R  Q  E  Q  *  L  L  R  L  V  L  K  L  P  L  H  L  L  R  A  H  C  R  *  H  L  Q  L  *  V  P  K  I  P  I  I  V  V  V  K  *  A  H  *  Q  *  S  L  S  Y  *  V  M  C  W  F  C  V  L  C  V  F  F  S  T  V  S  S  A  L  G  K  F  L  H  R  R  M  G  H  T  F  L  K  V  R  R  L  Y  T  R  L  A  R  I  L  I  R  A  R  R  V  G  S  R  E  E  K  W  C  F  S  K  G  R  R  G  L  S  L  R  I  C  *  E  L  Q  L  R  C  W  E  K  E  D  L  G  L  L  I  R  L  C  W  M  M  E  M  L  W  L  *  K  D  *  K  N  *  M  F  V  G  K  E  N  L  S  N  K  W  K  F  *  E  D  L  D  T  Q  I  W  L  V  *  K  H  I  T  L  L  E  M  R  S  C  W  C  M  S  S  *  L  M  A  T  C  F  G </second_frame>
            <third_frame>   P  L  H  F  S  L  I  L  L  P  L  H  P  S  *  I  Y  P  K  P  R  Y  C  A  I  A  S  F  Q  I  S  F  R  *  N  K  L  T  L  Q  L  E  L  I  N  *  P  L  F  L  D  W  C  I  L  S  *  Q  *  G  V  K  T  C  S  *  R  S  *  S  K  R  V  F  S  E  S  G  V  S  Q  R  V  E  S  I  E  L  E  I  *  *  F  F  W  F  C  S  E  S  F  E  P  Y  C  F  E  A  V  V  S  F  T  *  *  A  F  W  G  V  L  *  V  V  N  L  A  F  *  A  L  *  T  *  S  V  V  *  *  V  F  R  G  D  S  G  *  G  Q  S  F  D  T  F  A  Y  S  S  S  *  R  K  W  V  F  R  *  D  F  W  G  *  S  T  *  S  S  R  V  *  R  F  R  *  Q  T  R  R  R  N  T  P  F  S  I  S  F  P  G  I  C  I  F  E  E  P  G  S  L  W  F  S  V  A  *  L  Y  G  G  G  S  S  *  T  V  A  V  D  R  S  N  S  F  S  G  *  S  *  N  Y  R  C  I  F  S  E  L  I  A  G  D  I  C  N  F  E  S  Q  K  Y  P  S  *  *  W  *  N  E  L  I  S  N  N  R  Y  H  T  R  *  C  V  G  S  V  C  C  V  Y  F  S  L  L  F  L  L  H  *  E  S  F  F  T  E  E  W  V  T  H  S  *  R  *  E  D  C  I  L  V  *  P  V  S  *  Y  G  P  D  E  W  V  R  E  R  K  N  G  V  F  R  R  G  E  E  V  *  A  *  G  F  V  E  S  F  S  *  D  V  G  K  R  R  I  W  D  C  L  *  G  C  V  G  *  W  K  C  C  G  C  E  K  I  E  R  I  E  C  L  W  E  K  R  I  *  A  T  N  G  S  F  R  K  T  *  T  P  K  F  G  *  F  E  S  I  L  L  C  *  R  *  E  V  V  G  V  *  V  H  D  *  W  Q  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52584" stop="51280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHYTFLSFFFLFTLLESTPNPDIAPLLAFKSASDETNSLYNWNSSTDPCSWTGVSCLNNRVSRLVLEGLNLKGSFQNLVFLKELRVLSLKYNNFSGSVPNLSNLTALKLLFLSHNELSGEFSESLTSLFKLYRLDLSYNKFSGEIPAKVNHLTHLLTLRLEGNGFSGEISGVNLPNLQEFNVSGNKLVGEIPLSLSRFPVSAFSKNRVLCGSPLPNCTAEVPREPSPSTGAIASPVSPKTTVASSPSSLPVTSATLSPKNTHHSSGKMSSLAIIAIILGDVLVLCVVCIFLYCFFCIRKVSSQKNGSHILEGEKIVYSSSPYPNTGQTSGFERGKMVFFEGAKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKELNVCGKREFEQQMEVLGRLRHPNLVSLKAYYFARDEKLLVYEFMTNGNLFW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55007" PGL_stop="55458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55007" e_stop="55458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="55007" e_stop="55458" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55007" stop="55331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55007" stop="55314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55008" stop="55458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAACATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACAAAATATATACACTTTTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAATGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGATGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  L  H  N  Y  K  C  I  A  R  T  Y  M  F  F  S  R  F  I  Q  K  Q  K  Q  N  I  Y  T  F  V  I  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  F  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  M  P  D  K  L  *  L  T  F  A  M  E  H  N  *  I  K  L  *  L  L  H  L  F  *  V  I   </first_frame>
            <second_frame>  K  I  Y  V  Y  C  I  I  I  S  V  *  Q  E  H  I  C  F  S  L  A  L  Y  K  N  R  N  K  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  N  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  *  R  A  R  F  L  G  E  R  C  L  T  N  F  S  *  R  L  L  W  S  T  I  K  S  N  S  S  Y  S  I  Y  F  R  L  L  </second_frame>
            <third_frame>   K  Y  M  Y  I  A  *  L  *  V  Y  S  K  N  I  Y  V  F  L  S  L  Y  T  K  T  E  T  K  Y  I  H  F  C  Y  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  M  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  S  E  R  D  F  W  E  R  D  A  *  Q  T  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  T  P  F  I  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0118J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62520" PGL_stop="66680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62520" e_stop="62888"/>
            <exon e_start="63898" e_stop="64018"/>
            <exon e_start="64111" e_stop="64196"/>
            <exon e_start="64304" e_stop="64685"/>
            <exon e_start="64779" e_stop="64879"/>
            <exon e_start="64960" e_stop="65026"/>
            <exon e_start="65115" e_stop="65342"/>
            <exon e_start="65498" e_stop="65959"/>
            <exon e_start="66170" e_stop="66242"/>
            <exon e_start="66351" e_stop="66680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.375" e_score="0.946"/>
          <exon-intron don_prob="0.982" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.395" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.983" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="62520" e_stop="62888" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.375">
            <gDNA_intron_boundary i_start="62889" i_stop="63897" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63898" e_stop="64018" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.972">
            <gDNA_intron_boundary i_start="64019" i_stop="64110" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64111" e_stop="64196" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.904" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64197" i_stop="64303" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64304" e_stop="64685" e_length="382"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.395">
            <gDNA_intron_boundary i_start="64686" i_stop="64778" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64779" e_stop="64879" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64880" i_stop="64959" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64960" e_stop="65026" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.937">
            <gDNA_intron_boundary i_start="65027" i_stop="65114" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65115" e_stop="65342" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.956">
            <gDNA_intron_boundary i_start="65343" i_stop="65497" i_length="155"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="65498" e_stop="65959" e_length="462"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.983">
            <gDNA_intron_boundary i_start="65960" i_stop="66169" i_length="210"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66170" e_stop="66242" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="66243" i_stop="66350" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66351" e_stop="66680" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62520" stop="62888"/>
              <exon start="63898" stop="63976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62579" stop="62888"/>
              <exon start="63898" stop="64018"/>
              <exon start="64111" stop="64196"/>
              <exon start="64304" stop="64494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62583" stop="62888"/>
              <exon start="63898" stop="64018"/>
              <exon start="64111" stop="64196"/>
              <exon start="64304" stop="64436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63921" stop="64018"/>
              <exon start="64111" stop="64196"/>
              <exon start="64304" stop="64685"/>
              <exon start="64779" stop="64785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64436" stop="64685"/>
              <exon start="64779" stop="64879"/>
              <exon start="64960" stop="65026"/>
              <exon start="65115" stop="65342"/>
              <exon start="65498" stop="65663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64685"/>
              <exon start="64779" stop="64879"/>
              <exon start="64960" stop="65026"/>
              <exon start="65115" stop="65202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65498" stop="65959"/>
              <exon start="66170" stop="66242"/>
              <exon start="66351" stop="66680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65934" stop="65959"/>
              <exon start="66170" stop="66242"/>
              <exon start="66351" stop="66664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTTTCACTTTCACTTCACTCTATGTATTCTCTGCATTTCCATTTCACAATCAAACCAAAAAACTATGAAATCAATAACAAATTATCATCAATTTGTTCATGGAAATCGAGTTTTTCATCTTCGGACTATGTTAAATTTGATTCGAAGAATGAGAATTTTAGAATTTACTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGAGAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGAGATTTTGGTGAATGCTGATGTTGATTCTGTATGGAATGCTCTTACTGATTATGAAAGGCTTGCTGATTTCGTCCCGAATCTTGTTAGCAG : TAGGAGAATCCCTTGTCCACGTCCTGGGCGTATTTGGTTGGAGCAAAGAGGTATCCAACGATCTCTCTATTGGCACATAGAAGCTCGCGTTGTATTGGATCTCCAAGAATTCATTAAATCC : GATAATGTTCGCGAGCTCCATTTCTCTATGGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCAGTGAGAGTTGGAACAAG : GTCTTCAACGGCTATACTAAGTTATGAAGTTAGTGTCATACCGAGGTTCAACTTTCCAGCCATTTTCTTGGAGAGGATTATCAGGTCAGACCTCCCCGTAAATCTTCAAGCGTTGTCCTGTAGAGCTGAAAACAGTTATCAAGGTTATCAGAATGTTACCAAAGAGGAACCTGGTTCTTACCTTATTGATCATGTCATATCCCACGAAAATAAATCTTCGGGTGAACACTTGAAGGAAAAGTTTGTCAAAGCCACTTTTGGCCCGTCGACACCAGTTACAAGTGACGTGACTAATAATTGGGGAATATTTGGGAAAACTTGCAGACTTGACAAGCCATGTGTGGTGGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTG : GAAAATGGAGGTGTTCATCGTTGCGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGCTTATGAAAGTCTTCCCGA : GATAGTTCCGAATTTAGCAATCAGTAAGATCTTATCACGAGACAACAACAAAGTTCGCATTCTTCAG : GAAGGATGCAAGGGTCTTCTATACATGGTTCTCCATGCACGTGTCGTTCTAGACTTATCTGAACTCATAGAACAAGAAATTAGCTTTGAGCAGGTGGAAGGAGATTTCGATTCTTTTGAAGGAAAATGGATCTTAGAGCAATTAGGCAGTCATCATACTCTGTTGAAGTATAGTGTGGAGTCAAAAATGCACAAGAATTCGTTTCTTTCCGAAGCAATTATGGAAGAG : GTCATATACGAGGACCTTCCATCAAACTTATGTGCAATCCGAGATTACATTGAGGAACGAGAGACAGAGAAACCTCTTGAAAAATTTAACCATGATGAATTCCGAGAGGCATCGGTTAGTTCATCAATGAAGGATTCATCTGTTCATTATGATAGGCAAGCTGGGCAGAATTCAGATAGTAGTAGTTTACATTCACCTAGACAAAGGCCGAAAGTTCCAGGGTTGCAGAGGGATATTGAAGTTCTTAAAGCTGAGCTCTTGGATTTTATTTCCGAACATGGACAAGAAGGATTTATGCCTATGAGAAAGCAACTCAGAAAACATGGAAGAGTTGATATTGAAAAGGCGATTACACGTATGGGAGGTTTTAGAAGAATTTCTTCATTGATGAATCTATCTCTTGCTTACAAACACCGCAAACCAAAAGGTTATTGGGATAGCTTAGAAAATTTACAAGAGGAG : ATCAGTCGATTCCAGAAGAACTGGGGAATGGATCTATCGTATATGCCTAGTAGAAAATCCTTCGAACGTGCAG : GCCGATATGATATTGCTCGTGCGTTAGAAAAATGGGGCGGCCTTCATGAAGTTTCGCGTCTTCTGTCACTTAAGGTAAGGCATCCTAACAGACAAGCAAGCTTTGCCAAAGAGAAGAAAGTTGAATTATTAGCTAATGATGTAAATTGTGAAACGACATCGTCTAAACCTTTTGTTGCACAAGATGCAAAGAAATGGCTCATGAAACTCAAGGACTTGGACATAAATTGGGTGGAATGAGTATTGAGTTTTGTTTCACTTTCTTCTAAAAGCATGACAACAACTAATTGTAGCGAGTGTATATATATCAATCAAGTATGTTTCGATTCCA</gDNA_template>
            <first_frame> K  F  F  T  F  T  S  L  Y  V  F  S  A  F  P  F  H  N  Q  T  K  K  L  *  N  Q  *  Q  I  I  I  N  L  F  M  E  I  E  F  F  I  F  G  L  C  *  I  *  F  E  E  *  E  F  *  N  L  L  L  *  K  R  G  F  F  R  R  R  C  N  G  S  R  E  K  C  W  M  *  S  G  S  C  F  V  E  R  T  K  D  *  S  *  D  F  G  E  C  *  C  *  F  C  M  E  C  S  Y  *  L  *  K  A  C  *  F  R  P  E  S  C  *  Q  :  *  E  N  P  L  S  T  S  W  A  Y  L  V  G  A  K  R  Y  P  T  I  S  L  L  A  H  R  S  S  R  C  I  G  S  P  R  I  H  *  I   : R  *  C  S  R  A  P  F  L  Y  G  *  R  *  L  Q  E  V  *  R  Q  M  V  S  E  S  W  N  K  :  V  F  N  G  Y  T  K  L  *  S  *  C  H  T  E  V  Q  L  S  S  H  F  L  G  E  D  Y  Q  V  R  P  P  R  K  S  S  S  V  V  L  *  S  *  K  Q  L  S  R  L  S  E  C  Y  Q  R  G  T  W  F  L  P  Y  *  S  C  H  I  P  R  K  *  I  F  G  *  T  L  E  G  K  V  C  Q  S  H  F  W  P  V  D  T  S  Y  K  *  R  D  *  *  L  G  N  I  W  E  N  L  Q  T  *  Q  A  M  C  G  G  *  S  P  S  P  K  I  *  W  S  T   : G  K  W  R  C  S  S  L  R  C  C  *  Y  Y  S  K  S  S  S  S  R  S  M  E  C  F  D  C  L  *  K  S  S  R  :  D  S  S  E  F  S  N  Q  *  D  L  I  T  R  Q  Q  Q  S  S  H  S  S   : G  R  M  Q  G  S  S  I  H  G  S  P  C  T  C  R  S  R  L  I  *  T  H  R  T  R  N  *  L  *  A  G  G  R  R  F  R  F  F  *  R  K  M  D  L  R  A  I  R  Q  S  S  Y  S  V  E  V  *  C  G  V  K  N  A  Q  E  F  V  S  F  R  S  N  Y  G  R   : G  H  I  R  G  P  S  I  K  L  M  C  N  P  R  L  H  *  G  T  R  D  R  E  T  S  *  K  I  *  P  *  *  I  P  R  G  I  G  *  F  I  N  E  G  F  I  C  S  L  *  *  A  S  W  A  E  F  R  *  *  *  F  T  F  T  *  T  K  A  E  S  S  R  V  A  E  G  Y  *  S  S  *  S  *  A  L  G  F  Y  F  R  T  W  T  R  R  I  Y  A  Y  E  K  A  T  Q  K  T  W  K  S  *  Y  *  K  G  D  Y  T  Y  G  R  F  *  K  N  F  F  I  D  E  S  I  S  C  L  Q  T  P  Q  T  K  R  L  L  G  *  L  R  K  F  T  R  G   : D  Q  S  I  P  E  E  L  G  N  G  S  I  V  Y  A  *  *  K  I  L  R  T  C  R :   P  I  *  Y  C  S  C  V  R  K  M  G  R  P  S  *  S  F  A  S  S  V  T  *  G  K  A  S  *  Q  T  S  K  L  C  Q  R  E  E  S  *  I  I  S  *  *  C  K  L  *  N  D  I  V  *  T  F  C  C  T  R  C  K  E  M  A  H  E  T  Q  G  L  G  H  K  L  G  G  M  S  I  E  F  C  F  T  F  F  *  K  H  D  N  N  *  L  *  R  V  Y  I  Y  Q  S  S  M  F  R  F   </first_frame>
            <second_frame>  S  F  S  L  S  L  H  S  M  Y  S  L  H  F  H  F  T  I  K  P  K  N  Y  E  I  N  N  K  L  S  S  I  C  S  W  K  S  S  F  S  S  S  D  Y  V  K  F  D  S  K  N  E  N  F  R  I  Y  Y  Y  R  K  G  D  F  L  G  G  D  A  M  G  V  E  K  N  V  G  C  E  V  E  V  V  S  W  R  E  R  K  I  K  A  E  I  L  V  N  A  D  V  D  S  V  W  N  A  L  T  D  Y  E  R  L  A  D  F  V  P  N  L  V  S  S :   R  R  I  P  C  P  R  P  G  R  I  W  L  E  Q  R  G  I  Q  R  S  L  Y  W  H  I  E  A  R  V  V  L  D  L  Q  E  F  I  K  S  :  D  N  V  R  E  L  H  F  S  M  V  D  G  D  F  K  K  F  E  G  K  W  S  V  R  V  G  T  R :   S  S  T  A  I  L  S  Y  E  V  S  V  I  P  R  F  N  F  P  A  I  F  L  E  R  I  I  R  S  D  L  P  V  N  L  Q  A  L  S  C  R  A  E  N  S  Y  Q  G  Y  Q  N  V  T  K  E  E  P  G  S  Y  L  I  D  H  V  I  S  H  E  N  K  S  S  G  E  H  L  K  E  K  F  V  K  A  T  F  G  P  S  T  P  V  T  S  D  V  T  N  N  W  G  I  F  G  K  T  C  R  L  D  K  P  C  V  V  D  E  V  H  L  R  R  F  D  G  L  L  :  E  N  G  G  V  H  R  C  V  V  A  S  I  T  V  K  A  P  V  R  E  V  W  N  V  L  T  A  Y  E  S  L  P  E :   I  V  P  N  L  A  I  S  K  I  L  S  R  D  N  N  K  V  R  I  L  Q  :  E  G  C  K  G  L  L  Y  M  V  L  H  A  R  V  V  L  D  L  S  E  L  I  E  Q  E  I  S  F  E  Q  V  E  G  D  F  D  S  F  E  G  K  W  I  L  E  Q  L  G  S  H  H  T  L  L  K  Y  S  V  E  S  K  M  H  K  N  S  F  L  S  E  A  I  M  E  E  :  V  I  Y  E  D  L  P  S  N  L  C  A  I  R  D  Y  I  E  E  R  E  T  E  K  P  L  E  K  F  N  H  D  E  F  R  E  A  S  V  S  S  S  M  K  D  S  S  V  H  Y  D  R  Q  A  G  Q  N  S  D  S  S  S  L  H  S  P  R  Q  R  P  K  V  P  G  L  Q  R  D  I  E  V  L  K  A  E  L  L  D  F  I  S  E  H  G  Q  E  G  F  M  P  M  R  K  Q  L  R  K  H  G  R  V  D  I  E  K  A  I  T  R  M  G  G  F  R  R  I  S  S  L  M  N  L  S  L  A  Y  K  H  R  K  P  K  G  Y  W  D  S  L  E  N  L  Q  E  E  :  I  S  R  F  Q  K  N  W  G  M  D  L  S  Y  M  P  S  R  K  S  F  E  R  A   : G  R  Y  D  I  A  R  A  L  E  K  W  G  G  L  H  E  V  S  R  L  L  S  L  K  V  R  H  P  N  R  Q  A  S  F  A  K  E  K  K  V  E  L  L  A  N  D  V  N  C  E  T  T  S  S  K  P  F  V  A  Q  D  A  K  K  W  L  M  K  L  K  D  L  D  I  N  W  V  E  *  V  L  S  F  V  S  L  S  S  K  S  M  T  T  T  N  C  S  E  C  I  Y  I  N  Q  V  C  F  D  S  </second_frame>
            <third_frame>   V  F  H  F  H  F  T  L  C  I  L  C  I  S  I  S  Q  S  N  Q  K  T  M  K  S  I  T  N  Y  H  Q  F  V  H  G  N  R  V  F  H  L  R  T  M  L  N  L  I  R  R  M  R  I  L  E  F  T  I  I  E  K  G  I  F  *  E  E  M  Q  W  E  *  R  K  M  L  D  V  K  W  K  L  F  R  G  E  N  E  R  L  K  L  R  F  W  *  M  L  M  L  I  L  Y  G  M  L  L  L  I  M  K  G  L  L  I  S  S  R  I  L  L  A   : V  G  E  S  L  V  H  V  L  G  V  F  G  W  S  K  E  V  S  N  D  L  S  I  G  T  *  K  L  A  L  Y  W  I  S  K  N  S  L  N  P :   I  M  F  A  S  S  I  S  L  W  L  T  V  T  S  R  S  L  K  A  N  G  Q  *  E  L  E  Q   : G  L  Q  R  L  Y  *  V  M  K  L  V  S  Y  R  G  S  T  F  Q  P  F  S  W  R  G  L  S  G  Q  T  S  P  *  I  F  K  R  C  P  V  E  L  K  T  V  I  K  V  I  R  M  L  P  K  R  N  L  V  L  T  L  L  I  M  S  Y  P  T  K  I  N  L  R  V  N  T  *  R  K  S  L  S  K  P  L  L  A  R  R  H  Q  L  Q  V  T  *  L  I  I  G  E  Y  L  G  K  L  A  D  L  T  S  H  V  W  W  M  K  S  I  S  E  D  L  M  V  Y  W :   K  M  E  V  F  I  V  A  L  L  L  V  L  Q  *  K  L  Q  F  A  K  Y  G  M  F  *  L  L  M  K  V  F  P   : R  *  F  R  I  *  Q  S  V  R  S  Y  H  E  T  T  T  K  F  A  F  F  R :   K  D  A  R  V  F  Y  T  W  F  S  M  H  V  S  F  *  T  Y  L  N  S  *  N  K  K  L  A  L  S  R  W  K  E  I  S  I  L  L  K  E  N  G  S  *  S  N  *  A  V  I  I  L  C  *  S  I  V  W  S  Q  K  C  T  R  I  R  F  F  P  K  Q  L  W  K  R :   S  Y  T  R  T  F  H  Q  T  Y  V  Q  S  E  I  T  L  R  N  E  R  Q  R  N  L  L  K  N  L  T  M  M  N  S  E  R  H  R  L  V  H  Q  *  R  I  H  L  F  I  M  I  G  K  L  G  R  I  Q  I  V  V  V  Y  I  H  L  D  K  G  R  K  F  Q  G  C  R  G  I  L  K  F  L  K  L  S  S  W  I  L  F  P  N  M  D  K  K  D  L  C  L  *  E  S  N  S  E  N  M  E  E  L  I  L  K  R  R  L  H  V  W  E  V  L  E  E  F  L  H  *  *  I  Y  L  L  L  T  N  T  A  N  Q  K  V  I  G  I  A  *  K  I  Y  K  R  R :   S  V  D  S  R  R  T  G  E  W  I  Y  R  I  C  L  V  E  N  P  S  N  V  Q  :  A  D  M  I  L  L  V  R  *  K  N  G  A  A  F  M  K  F  R  V  F  C  H  L  R  *  G  I  L  T  D  K  Q  A  L  P  K  R  R  K  L  N  Y  *  L  M  M  *  I  V  K  R  H  R  L  N  L  L  L  H  K  M  Q  R  N  G  S  *  N  S  R  T  W  T  *  I  G  W  N  E  Y  *  V  L  F  H  F  L  L  K  A  *  Q  Q  L  I  V  A  S  V  Y  I  S  I  K  Y  V  S  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62521" stop="62888"/>
                    <exon start="63898" stop="64018"/>
                    <exon start="64111" stop="64196"/>
                    <exon start="64304" stop="64685"/>
                    <exon start="64779" stop="64879"/>
                    <exon start="64960" stop="65026"/>
                    <exon start="65115" stop="65342"/>
                    <exon start="65498" stop="65959"/>
                    <exon start="66170" stop="66242"/>
                    <exon start="66351" stop="66589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2124</number_coding_nucleotides>
                  <number_encoded_amino_acids>708</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLSLHSMYSLHFHFTIKPKNYEINNKLSSICSWKSSFSSSDYVKFDSKNENFRIYYYRKGDFLGGDAMGVEKNVGCEVEVVSWRERKIKAEILVNADVDSVWNALTDYERLADFVPNLVSSRRIPCPRPGRIWLEQRGIQRSLYWHIEARVVLDLQEFIKSDNVRELHFSMVDGDFKKFEGKWSVRVGTRSSTAILSYEVSVIPRFNFPAIFLERIIRSDLPVNLQALSCRAENSYQGYQNVTKEEPGSYLIDHVISHENKSSGEHLKEKFVKATFGPSTPVTSDVTNNWGIFGKTCRLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVREVWNVLTAYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLSELIEQEISFEQVEGDFDSFEGKWILEQLGSHHTLLKYSVESKMHKNSFLSEAIMEEVIYEDLPSNLCAIRDYIEERETEKPLEKFNHDEFREASVSSSMKDSSVHYDRQAGQNSDSSSLHSPRQRPKVPGLQRDIEVLKAELLDFISEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGFRRISSLMNLSLAYKHRKPKGYWDSLENLQEEISRFQKNWGMDLSYMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKVRHPNRQASFAKEKKVELLANDVNCETTSSKPFVAQDAKKWLMKLKDLDINWVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73559" PGL_stop="72050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73559" e_stop="73276"/>
            <exon e_start="72746" e_stop="72575"/>
            <exon e_start="72478" e_stop="72325"/>
            <exon e_start="72248" e_stop="72185"/>
            <exon e_start="72113" e_stop="72050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.794" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73559" e_stop="73276" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.958">
            <gDNA_intron_boundary i_start="73275" i_stop="72747" i_length="529"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72746" e_stop="72575" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72574" i_stop="72479" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72478" e_stop="72325" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="72324" i_stop="72249" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72248" e_stop="72185" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.674" acc_prob="0.794">
            <gDNA_intron_boundary i_start="72184" i_stop="72114" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72113" e_stop="72050" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73559" stop="73276"/>
              <exon start="72746" stop="72575"/>
              <exon start="72478" stop="72325"/>
              <exon start="72248" stop="72185"/>
              <exon start="72113" stop="72050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73556" stop="73276"/>
              <exon start="72746" stop="72575"/>
              <exon start="72478" stop="72325"/>
              <exon start="72248" stop="72185"/>
              <exon start="72113" stop="72098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73556" stop="73276"/>
              <exon start="72746" stop="72575"/>
              <exon start="72478" stop="72325"/>
              <exon start="72248" stop="72204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACAAGGTATAAGTTTCAACGTCGTGTTGGAATTTGGGAGATTTAACTTGGAATAGTTTGTAGGTCGAAAATGGGGTCAAGACAAGAGAGGCATAGATCTGATCATGATCTTGTGCCATTAGCAGCACTGATAAGCAGAGAATTGCGGAATGAAAAAATGGAGAAGCCAACTGTAAGATACGGATGTGCAGCTCAGTCTAAGAAAGGTGAGGATTATTATCTGATGACGACAGATTGCCAGAGAATTCATGGCAATCCTTCATCCGCCTTCTCTGTGTTTGCG : ATCTTTGATGGACATAATGGAACAGCAGCCGCAGTGTACTCAAGGGATCATCTACTAAATCATGTTTTGGGTGCCATTCCTTGTGGACTGGGGAGGGATGAGTGGCTTCAAGCTTTGCCTCGTGCACTAGTTGTAGGGTTTGTGAAAACTGACAAGGAGTTTCAGAAGAAAG : GACTAACATCTGGAACTACAGCTACATTTGTGATTGTTGATAGATGGACCGTGACAGTTGCGTCTGTTGGAGATTCACGCTGCATTTTGGATACTCAGGGTGGTGCTGTTTCAGAATTAACTGTAGATCACAGGCTTGAAGAAAATGCAGAGGA : AAGGGAGCGTGTCACAGCAAGTGGAGGCGAAGTAGGAAGACTTTGTATTTTTGGTGGTACTGAG : ATTGGTCCTCTTCGCTGTTGGCCAGGAGGTTTATGCCTTTCAAGATCAATCGGAGATATGGATG</gDNA_template>
            <first_frame> *  Q  G  I  S  F  N  V  V  L  E  F  G  R  F  N  L  E  *  F  V  G  R  K  W  G  Q  D  K  R  G  I  D  L  I  M  I  L  C  H  *  Q  H  *  *  A  E  N  C  G  M  K  K  W  R  S  Q  L  *  D  T  D  V  Q  L  S  L  R  K  V  R  I  I  I  *  *  R  Q  I  A  R  E  F  M  A  I  L  H  P  P  S  L  C  L  R :   S  L  M  D  I  M  E  Q  Q  P  Q  C  T  Q  G  I  I  Y  *  I  M  F  W  V  P  F  L  V  D  W  G  G  M  S  G  F  K  L  C  L  V  H  *  L  *  G  L  *  K  L  T  R  S  F  R  R  K  :  D  *  H  L  E  L  Q  L  H  L  *  L  L  I  D  G  P  *  Q  L  R  L  L  E  I  H  A  A  F  W  I  L  R  V  V  L  F  Q  N  *  L  *  I  T  G  L  K  K  M  Q  R   : K  G  S  V  S  Q  Q  V  E  A  K  *  E  D  F  V  F  L  V  V  L  R :   L  V  L  F  A  V  G  Q  E  V  Y  A  F  Q  D  Q  S  E  I  W  M </first_frame>
            <second_frame>  N  K  V  *  V  S  T  S  C  W  N  L  G  D  L  T  W  N  S  L  *  V  E  N  G  V  K  T  R  E  A  *  I  *  S  *  S  C  A  I  S  S  T  D  K  Q  R  I  A  E  *  K  N  G  E  A  N  C  K  I  R  M  C  S  S  V  *  E  R  *  G  L  L  S  D  D  D  R  L  P  E  N  S  W  Q  S  F  I  R  L  L  C  V  C   : D  L  *  W  T  *  W  N  S  S  R  S  V  L  K  G  S  S  T  K  S  C  F  G  C  H  S  L  W  T  G  E  G  *  V  A  S  S  F  A  S  C  T  S  C  R  V  C  E  N  *  Q  G  V  S  E  E  R :   T  N  I  W  N  Y  S  Y  I  C  D  C  *  *  M  D  R  D  S  C  V  C  W  R  F  T  L  H  F  G  Y  S  G  W  C  C  F  R  I  N  C  R  S  Q  A  *  R  K  C  R  G  :  K  G  A  C  H  S  K  W  R  R  S  R  K  T  L  Y  F  W  W  Y  *   : D  W  S  S  S  L  L  A  R  R  F  M  P  F  K  I  N  R  R  Y  G   </second_frame>
            <third_frame>   T  R  Y  K  F  Q  R  R  V  G  I  W  E  I  *  L  G  I  V  C  R  S  K  M  G  S  R  Q  E  R  H  R  S  D  H  D  L  V  P  L  A  A  L  I  S  R  E  L  R  N  E  K  M  E  K  P  T  V  R  Y  G  C  A  A  Q  S  K  K  G  E  D  Y  Y  L  M  T  T  D  C  Q  R  I  H  G  N  P  S  S  A  F  S  V  F  A  :  I  F  D  G  H  N  G  T  A  A  A  V  Y  S  R  D  H  L  L  N  H  V  L  G  A  I  P  C  G  L  G  R  D  E  W  L  Q  A  L  P  R  A  L  V  V  G  F  V  K  T  D  K  E  F  Q  K  K   : G  L  T  S  G  T  T  A  T  F  V  I  V  D  R  W  T  V  T  V  A  S  V  G  D  S  R  C  I  L  D  T  Q  G  G  A  V  S  E  L  T  V  D  H  R  L  E  E  N  A  E  E :   R  E  R  V  T  A  S  G  G  E  V  G  R  L  C  I  F  G  G  T  E  :  I  G  P  L  R  C  W  P  G  G  L  C  L  S  R  S  I  G  D  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73512" stop="73276"/>
                    <exon start="72746" stop="72575"/>
                    <exon start="72478" stop="72325"/>
                    <exon start="72248" stop="72185"/>
                    <exon start="72113" stop="72051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGIVCRSKMGSRQERHRSDHDLVPLAALISRELRNEKMEKPTVRYGCAAQSKKGEDYYLMTTDCQRIHGNPSSAFSVFAIFDGHNGTAAAVYSRDHLLNHVLGAIPCGLGRDEWLQALPRALVVGFVKTDKEFQKKGLTSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVSELTVDHRLEENAEERERVTASGGEVGRLCIFGGTEIGPLRCWPGGLCLSRSIGDMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80110" PGL_stop="81924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80110" e_stop="80400"/>
            <exon e_start="81263" e_stop="81298"/>
            <exon e_start="81465" e_stop="81924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.012" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80110" e_stop="80400" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80401" i_stop="81262" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81263" e_stop="81298" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.012">
            <gDNA_intron_boundary i_start="81299" i_stop="81464" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81465" e_stop="81924" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80110" stop="80400"/>
              <exon start="81263" stop="81298"/>
              <exon start="81465" stop="81614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81487" stop="81924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGAATGATTGGTTTCTTGCAATGTTTGATGATGATGAAGGCTTTGAGTCTGCATTACAAGCGTGTAAAGATCATGTAATAATACCAGTAGAACTGCTTGGAAATGAGGGGAGTAATCGAGTTATTGACTATCAAGTCTTACTGAGAAGGGGGTTTAGATTGAGCTGGATATCAAGTGACTGCAGTGAGTGTACAGAAAGTGGGGGACGTTGCGGATTTGATGTCATCAATTATCAATTCAAATGTTTCTGCACTGACAGGCCTCATGCTTCGAGTTGCCAACCTACCA : AAGCAAAAAGAAACTTGGGACTGATTCTAGGCACAG : TTTTCTCTTGCATCGGAGTTGTGATTTTGCTCTTCTGCTTGAGAAAAAAGATTTTCTGGCACAGAAATCTCAGGTTTTGGGAATCTATAGCTGAGGATCACAGAAATATTGAAGCATTTCTGAAGAACTCTGGGTCATATGCTCCAAAAAGATACAGCTATACAGACATCAAAGGAATCACCAGTTACTTCAAAAACAAACTAGGCCAAGGAGGATTTGGTAATGTATACAGAGGAAGTTTGCCTAACGGGAGTCAAGTGGCAGTGAAGGTCCTGAATGAACTAAAAGGTAATAGTGAAGATTTCATTAATGAGGTAGCAAGTATTAGCAGGACATCACATGTTAACATTGTGAGCCTTGTGGGATTTTGTTTTGAGTGTCACAAAAGAGCTCTTATTTATGAATTCATGCCAAATGGATCTCTTGAAAAGTTTATCTATGAGGAAAGATCTGACGGAGT</gDNA_template>
            <first_frame> M  *  M  I  G  F  L  Q  C  L  M  M  M  K  A  L  S  L  H  Y  K  R  V  K  I  M  *  *  Y  Q  *  N  C  L  E  M  R  G  V  I  E  L  L  T  I  K  S  Y  *  E  G  G  L  D  *  A  G  Y  Q  V  T  A  V  S  V  Q  K  V  G  D  V  A  D  L  M  S  S  I  I  N  S  N  V  S  A  L  T  G  L  M  L  R  V  A  N  L  P  :  K  Q  K  E  T  W  D  *  F  *  A  Q  :  F  S  L  A  S  E  L  *  F  C  S  S  A  *  E  K  R  F  S  G  T  E  I  S  G  F  G  N  L  *  L  R  I  T  E  I  L  K  H  F  *  R  T  L  G  H  M  L  Q  K  D  T  A  I  Q  T  S  K  E  S  P  V  T  S  K  T  N  *  A  K  E  D  L  V  M  Y  T  E  E  V  C  L  T  G  V  K  W  Q  *  R  S  *  M  N  *  K  V  I  V  K  I  S  L  M  R  *  Q  V  L  A  G  H  H  M  L  T  L  *  A  L  W  D  F  V  L  S  V  T  K  E  L  L  F  M  N  S  C  Q  M  D  L  L  K  S  L  S  M  R  K  D  L  T  E  </first_frame>
            <second_frame>  C  E  *  L  V  S  C  N  V  *  *  *  *  R  L  *  V  C  I  T  S  V  *  R  S  C  N  N  T  S  R  T  A  W  K  *  G  E  *  S  S  Y  *  L  S  S  L  T  E  K  G  V  *  I  E  L  D  I  K  *  L  Q  *  V  Y  R  K  W  G  T  L  R  I  *  C  H  Q  L  S  I  Q  M  F  L  H  *  Q  A  S  C  F  E  L  P  T  Y  Q :   S  K  K  K  L  G  T  D  S  R  H  S :   F  L  L  H  R  S  C  D  F  A  L  L  L  E  K  K  D  F  L  A  Q  K  S  Q  V  L  G  I  Y  S  *  G  S  Q  K  Y  *  S  I  S  E  E  L  W  V  I  C  S  K  K  I  Q  L  Y  R  H  Q  R  N  H  Q  L  L  Q  K  Q  T  R  P  R  R  I  W  *  C  I  Q  R  K  F  A  *  R  E  S  S  G  S  E  G  P  E  *  T  K  R  *  *  *  R  F  H  *  *  G  S  K  Y  *  Q  D  I  T  C  *  H  C  E  P  C  G  I  L  F  *  V  S  Q  K  S  S  Y  L  *  I  H  A  K  W  I  S  *  K  V  Y  L  *  G  K  I  *  R  S </second_frame>
            <third_frame>   V  N  D  W  F  L  A  M  F  D  D  D  E  G  F  E  S  A  L  Q  A  C  K  D  H  V  I  I  P  V  E  L  L  G  N  E  G  S  N  R  V  I  D  Y  Q  V  L  L  R  R  G  F  R  L  S  W  I  S  S  D  C  S  E  C  T  E  S  G  G  R  C  G  F  D  V  I  N  Y  Q  F  K  C  F  C  T  D  R  P  H  A  S  S  C  Q  P  T   : K  A  K  R  N  L  G  L  I  L  G  T   : V  F  S  C  I  G  V  V  I  L  L  F  C  L  R  K  K  I  F  W  H  R  N  L  R  F  W  E  S  I  A  E  D  H  R  N  I  E  A  F  L  K  N  S  G  S  Y  A  P  K  R  Y  S  Y  T  D  I  K  G  I  T  S  Y  F  K  N  K  L  G  Q  G  G  F  G  N  V  Y  R  G  S  L  P  N  G  S  Q  V  A  V  K  V  L  N  E  L  K  G  N  S  E  D  F  I  N  E  V  A  S  I  S  R  T  S  H  V  N  I  V  S  L  V  G  F  C  F  E  C  H  K  R  A  L  I  Y  E  F  M  P  N  G  S  L  E  K  F  I  Y  E  E  R  S  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80112" stop="80400"/>
                    <exon start="81263" stop="81298"/>
                    <exon start="81465" stop="81922"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNDWFLAMFDDDEGFESALQACKDHVIIPVELLGNEGSNRVIDYQVLLRRGFRLSWISSDCSECTESGGRCGFDVINYQFKCFCTDRPHASSCQPTKAKRNLGLILGTVFSCIGVVILLFCLRKKIFWHRNLRFWESIAEDHRNIEAFLKNSGSYAPKRYSYTDIKGITSYFKNKLGQGGFGNVYRGSLPNGSQVAVKVLNELKGNSEDFINEVASISRTSHVNIVSLVGFCFECHKRALIYEFMPNGSLEKFIYEERSDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="82345" PGL_stop="82886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82345" e_stop="82886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82345" e_stop="82886" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82345" stop="82886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCAAGTTTATGGTGTATACAGACTGATCCGGCAAATCGACCATCGATGAGCAAGGTTGTGGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTACCTATATTCTCCCTCAAGATCAGAGGTAGATTCATCAACAATAGAACTGGCAACAACAACAACAACAACAACATATCCAGTATAGTCCCGCAAGTGGGGTGTGAGAAGAGTAGGGTGTATGCAAAACTTGCATCACCTTTGTGGAGTAGAGAGGTTGTTCCTGATAGACCCTAAGCTCAAGAAAATCGTTTTGCAGAAAATGGTTTGAAAGAAATGCAAGACAGTTTAGTTAACTAAGTACTTGTTGGTACTTAACTAGCAAAGAGAAGAAAGGTTTAGTTCAAGTGTTCAACCATAGCTTTCAATTTCATTTTGTGATTTTCATTAGTTGTCAAGGATGTATATTACTACATGGAAGTTAAATATTAAAAAGACTTGAATTCCCT</gDNA_template>
            <first_frame> D  N  E  *  R  G  E  R  M  C  K  K  D  G  D  S  K  F  M  V  Y  T  D  *  S  G  K  S  T  I  D  E  Q  G  C  G  N  V  R  R  E  T  R  L  F  A  N  A  S  Q  A  L  P  I  F  S  L  K  I  R  G  R  F  I  N  N  R  T  G  N  N  N  N  N  N  N  I  S  S  I  V  P  Q  V  G  C  E  K  S  R  V  Y  A  K  L  A  S  P  L  W  S  R  E  V  V  P  D  R  P  *  A  Q  E  N  R  F  A  E  N  G  L  K  E  M  Q  D  S  L  V  N  *  V  L  V  G  T  *  L  A  K  R  R  K  V  *  F  K  C  S  T  I  A  F  N  F  I  L  *  F  S  L  V  V  K  D  V  Y  Y  Y  M  E  V  K  Y  *  K  D  L  N  S   </first_frame>
            <second_frame>  I  M  N  E  E  E  N  E  C  A  R  K  M  V  I  A  S  L  W  C  I  Q  T  D  P  A  N  R  P  S  M  S  K  V  V  E  M  L  E  G  K  L  D  S  L  Q  M  P  P  K  P  Y  L  Y  S  P  S  R  S  E  V  D  S  S  T  I  E  L  A  T  T  T  T  T  T  T  Y  P  V  *  S  R  K  W  G  V  R  R  V  G  C  M  Q  N  L  H  H  L  C  G  V  E  R  L  F  L  I  D  P  K  L  K  K  I  V  L  Q  K  M  V  *  K  K  C  K  T  V  *  L  T  K  Y  L  L  V  L  N  *  Q  R  E  E  R  F  S  S  S  V  Q  P  *  L  S  I  S  F  C  D  F  H  *  L  S  R  M  Y  I  T  T  W  K  L  N  I  K  K  T  *  I  P  </second_frame>
            <third_frame>   *  *  M  K  R  R  T  N  V  Q  E  R  W  *  *  Q  V  Y  G  V  Y  R  L  I  R  Q  I  D  H  R  *  A  R  L  W  K  C  *  K  G  N  *  T  L  C  K  C  L  P  S  L  T  Y  I  L  P  Q  D  Q  R  *  I  H  Q  Q  *  N  W  Q  Q  Q  Q  Q  Q  Q  H  I  Q  Y  S  P  A  S  G  V  *  E  E  *  G  V  C  K  T  C  I  T  F  V  E  *  R  G  C  S  *  *  T  L  S  S  R  K  S  F  C  R  K  W  F  E  R  N  A  R  Q  F  S  *  L  S  T  C  W  Y  L  T  S  K  E  K  K  G  L  V  Q  V  F  N  H  S  F  Q  F  H  F  V  I  F  I  S  C  Q  G  C  I  L  L  H  G  S  *  I  L  K  R  L  E  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82417" stop="82674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGKSTIDEQGCGNVRRETRLFANASQALPIFSLKIRGRFINNRTGNNNNNNNISSIVPQVGCEKSRVYAKLASPLWSREVVPDRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82346" stop="82585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMNEEENECARKMVIASLWCIQTDPANRPSMSKVVEMLEGKLDSLQMPPKPYLYSPSRSEVDSSTIELATTTTTTTYPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="83830" PGL_stop="84480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83830" e_stop="84480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83830" e_stop="84480" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83830" stop="84480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83830" stop="84297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATATGGCTATCACTTCATATGTAAGCTATCTCCTATCACTTCTCCTGATCTTAGTTCAGGCAAAGGGCAGAAATGATTCAACTTGTCCAAAGTCATTTTCATGTGGAAATTTTACTGACCTAAGCTTTCCTTTCTCTCTTTCTACACAACCTGAATGTGGAATAATGTTCTTATCTGGTTGTGATGCTAAACCATATCCGAGAATCCGACTGCTTCCTGAGGGATATTAGTACTATGCTTTAGAGATGCATAATTTATCAGTTTGGCTTGGGGACACGAAGCTTCAAACAACGTTGACGCAACACAAGTGCCAGGCTTTTAACAAAAATTTCTCCCTTCCATACTCTTCTTTTATGTCTTTCCATATGATTAATATAATAAGCTTCTACAAATGCATCAGTACCAGTAATAATACCCGTAACATTACGCAGAAGAAGAACGATCATTTTGCTGGTTATAATATGTACACCGGCTGTGAAGGCTTTAGCATATACTACAACCTTTCCCGACATGATGATGAATACATAGCAGCAGACAATCTTCCTACCAACTGTTCACTTATCAGATTGCCAATTCAGGCAACTCATGGTGATTTGTTCGACATGTTAGGTCCTGCAATTCTAGTAGAATGGAAATTATCTGAGGAA</gDNA_template>
            <first_frame> F  N  M  A  I  T  S  Y  V  S  Y  L  L  S  L  L  L  I  L  V  Q  A  K  G  R  N  D  S  T  C  P  K  S  F  S  C  G  N  F  T  D  L  S  F  P  F  S  L  S  T  Q  P  E  C  G  I  M  F  L  S  G  C  D  A  K  P  Y  P  R  I  R  L  L  P  E  G  Y  *  Y  Y  A  L  E  M  H  N  L  S  V  W  L  G  D  T  K  L  Q  T  T  L  T  Q  H  K  C  Q  A  F  N  K  N  F  S  L  P  Y  S  S  F  M  S  F  H  M  I  N  I  I  S  F  Y  K  C  I  S  T  S  N  N  T  R  N  I  T  Q  K  K  N  D  H  F  A  G  Y  N  M  Y  T  G  C  E  G  F  S  I  Y  Y  N  L  S  R  H  D  D  E  Y  I  A  A  D  N  L  P  T  N  C  S  L  I  R  L  P  I  Q  A  T  H  G  D  L  F  D  M  L  G  P  A  I  L  V  E  W  K  L  S  E  E </first_frame>
            <second_frame>  L  I  W  L  S  L  H  M  *  A  I  S  Y  H  F  S  *  S  *  F  R  Q  R  A  E  M  I  Q  L  V  Q  S  H  F  H  V  E  I  L  L  T  *  A  F  L  S  L  F  L  H  N  L  N  V  E  *  C  S  Y  L  V  V  M  L  N  H  I  R  E  S  D  C  F  L  R  D  I  S  T  M  L  *  R  C  I  I  Y  Q  F  G  L  G  T  R  S  F  K  Q  R  *  R  N  T  S  A  R  L  L  T  K  I  S  P  F  H  T  L  L  L  C  L  S  I  *  L  I  *  *  A  S  T  N  A  S  V  P  V  I  I  P  V  T  L  R  R  R  R  T  I  I  L  L  V  I  I  C  T  P  A  V  K  A  L  A  Y  T  T  T  F  P  D  M  M  M  N  T  *  Q  Q  T  I  F  L  P  T  V  H  L  S  D  C  Q  F  R  Q  L  M  V  I  C  S  T  C  *  V  L  Q  F  *  *  N  G  N  Y  L  R   </second_frame>
            <third_frame>   *  Y  G  Y  H  F  I  C  K  L  S  P  I  T  S  P  D  L  S  S  G  K  G  Q  K  *  F  N  L  S  K  V  I  F  M  W  K  F  Y  *  P  K  L  S  F  L  S  F  Y  T  T  *  M  W  N  N  V  L  I  W  L  *  C  *  T  I  S  E  N  P  T  A  S  *  G  I  L  V  L  C  F  R  D  A  *  F  I  S  L  A  W  G  H  E  A  S  N  N  V  D  A  T  Q  V  P  G  F  *  Q  K  F  L  P  S  I  L  F  F  Y  V  F  P  Y  D  *  Y  N  K  L  L  Q  M  H  Q  Y  Q  *  *  Y  P  *  H  Y  A  E  E  E  R  S  F  C  W  L  *  Y  V  H  R  L  *  R  L  *  H  I  L  Q  P  F  P  T  *  *  *  I  H  S  S  R  Q  S  S  Y  Q  L  F  T  Y  Q  I  A  N  S  G  N  S  W  *  F  V  R  H  V  R  S  C  N  S  S  R  M  E  I  I  *  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84064" stop="84480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYALEMHNLSVWLGDTKLQTTLTQHKCQAFNKNFSLPYSSFMSFHMINIISFYKCISTSNNTRNITQKKNDHFAGYNMYTGCEGFSIYYNLSRHDDEYIAADNLPTNCSLIRLPIQATHGDLFDMLGPAILVEWKLSEE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83830" stop="84063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNMAITSYVSYLLSLLLILVQAKGRNDSTCPKSFSCGNFTDLSFPFSLSTQPECGIMFLSGCDAKPYPRIRLLPEGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="85679" PGL_stop="86425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85679" e_stop="86425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="85679" e_stop="86425" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85679" stop="86409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85820" stop="86425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85828" stop="86414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAGATCCGACAATGTTCGCCAATTAAGTTGGCCAATATTATACAAAATCGCACTAGGCATTGCTCGAGGATTGGAGTACTTGCACCGTGGTTGTAACACTCGGATTTTGCATTTTGATATAAAGCCTCATAATATCTTACTTGATGAGGATTTTTGTCCAAAGATCTCTGACTTTGGCCTTGCCAAACTATGCATAAAAAAGGAGAGTGTCGTGTCAATGTTAGGTCCACGAGGTACTATAGGCTATATTGCTCCGGAAATTGTTTGCAGAAACTTGGGAGGTGTCTCTCACAAGTCTGACGTCTATAGCTATGGAATGATGGTCCTAGAGATGGTTGGAGGAAGAAAAAATGTTGATGTAGGAGTTGATCGCACTAGTGAAATCTACTTTCCACATTGGCTTTATCAACGACTTGAACTAGAAGAAGAGCTTCAACTAATCGGGATAATGAATGAAGAGGAGAACGAATGTGCAAGAAAGATGGTGATAGCGAGTTTATGGTGCATACAGACTGATCCCTCAAATCGGCCATCGATGAGCAAGGTTGTTGAAATGTTAGAAGGGAAACTAGACTCTTTGCAAATGCCTCCCAAGCCTTATCTATTTTCTCCCTCAAGATCAGAGGTAAATTCATTAGTAGTAGAACTGGCCTAGCCTTTATTTGCTGATATGTAAGCTATCATTTGTATTATTGTATAGCCTCACTTTGTTATGAAATTTCAGCTAAATAGTTGTTGTTTT</gDNA_template>
            <first_frame> E  K  R  S  D  N  V  R  Q  L  S  W  P  I  L  Y  K  I  A  L  G  I  A  R  G  L  E  Y  L  H  R  G  C  N  T  R  I  L  H  F  D  I  K  P  H  N  I  L  L  D  E  D  F  C  P  K  I  S  D  F  G  L  A  K  L  C  I  K  K  E  S  V  V  S  M  L  G  P  R  G  T  I  G  Y  I  A  P  E  I  V  C  R  N  L  G  G  V  S  H  K  S  D  V  Y  S  Y  G  M  M  V  L  E  M  V  G  G  R  K  N  V  D  V  G  V  D  R  T  S  E  I  Y  F  P  H  W  L  Y  Q  R  L  E  L  E  E  E  L  Q  L  I  G  I  M  N  E  E  E  N  E  C  A  R  K  M  V  I  A  S  L  W  C  I  Q  T  D  P  S  N  R  P  S  M  S  K  V  V  E  M  L  E  G  K  L  D  S  L  Q  M  P  P  K  P  Y  L  F  S  P  S  R  S  E  V  N  S  L  V  V  E  L  A  *  P  L  F  A  D  M  *  A  I  I  C  I  I  V  *  P  H  F  V  M  K  F  Q  L  N  S  C  C  F </first_frame>
            <second_frame>  K  K  D  P  T  M  F  A  N  *  V  G  Q  Y  Y  T  K  S  H  *  A  L  L  E  D  W  S  T  C  T  V  V  V  T  L  G  F  C  I  L  I  *  S  L  I  I  S  Y  L  M  R  I  F  V  Q  R  S  L  T  L  A  L  P  N  Y  A  *  K  R  R  V  S  C  Q  C  *  V  H  E  V  L  *  A  I  L  L  R  K  L  F  A  E  T  W  E  V  S  L  T  S  L  T  S  I  A  M  E  *  W  S  *  R  W  L  E  E  E  K  M  L  M  *  E  L  I  A  L  V  K  S  T  F  H  I  G  F  I  N  D  L  N  *  K  K  S  F  N  *  S  G  *  *  M  K  R  R  T  N  V  Q  E  R  W  *  *  R  V  Y  G  A  Y  R  L  I  P  Q  I  G  H  R  *  A  R  L  L  K  C  *  K  G  N  *  T  L  C  K  C  L  P  S  L  I  Y  F  L  P  Q  D  Q  R  *  I  H  *  *  *  N  W  P  S  L  Y  L  L  I  C  K  L  S  F  V  L  L  Y  S  L  T  L  L  *  N  F  S  *  I  V  V  V   </second_frame>
            <third_frame>   K  K  I  R  Q  C  S  P  I  K  L  A  N  I  I  Q  N  R  T  R  H  C  S  R  I  G  V  L  A  P  W  L  *  H  S  D  F  A  F  *  Y  K  A  S  *  Y  L  T  *  *  G  F  L  S  K  D  L  *  L  W  P  C  Q  T  M  H  K  K  G  E  C  R  V  N  V  R  S  T  R  Y  Y  R  L  Y  C  S  G  N  C  L  Q  K  L  G  R  C  L  S  Q  V  *  R  L  *  L  W  N  D  G  P  R  D  G  W  R  K  K  K  C  *  C  R  S  *  S  H  *  *  N  L  L  S  T  L  A  L  S  T  T  *  T  R  R  R  A  S  T  N  R  D  N  E  *  R  G  E  R  M  C  K  K  D  G  D  S  E  F  M  V  H  T  D  *  S  L  K  S  A  I  D  E  Q  G  C  *  N  V  R  R  E  T  R  L  F  A  N  A  S  Q  A  L  S  I  F  S  L  K  I  R  G  K  F  I  S  S  R  T  G  L  A  F  I  C  *  Y  V  S  Y  H  L  Y  Y  C  I  A  S  L  C  Y  E  I  S  A  K  *  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85679" stop="86338"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRSDNVRQLSWPILYKIALGIARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKLCIKKESVVSMLGPRGTIGYIAPEIVCRNLGGVSHKSDVYSYGMMVLEMVGGRKNVDVGVDRTSEIYFPHWLYQRLELEEELQLIGIMNEEENECARKMVIASLWCIQTDPSNRPSMSKVVEMLEGKLDSLQMPPKPYLFSPSRSEVNSLVVELA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="87705" PGL_stop="87019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87705" e_stop="87019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="87705" e_stop="87019" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87705" stop="87019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87698" stop="87183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87697" stop="87231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAGTTCATCATATTCATGCCAAGTGAAAATGTATTTCATAAAAATGTTACATATACATATGATCACCAACATACATTGGTTATAAAAATTTATATGACATGAAATCAAAAATAAAAATAAAAATGTGCCTCCATATAATCGCGATCAAAATATAACCTCTTTTTAACTCCTCAAAAATAGCTCGAATAACATTTGATTGAGCGAGCGTAGCTTAGGTTATTCTCGATACGTTGAAATTGAAATTAAACTTATAGTTGAGGAGGAGGAGGACTAAAAGTTGGGAATGCAAATTTACCATGGTTATGGCACATATCATAGCATTCTTGTTCAGCATATAATGGACTTCCTTCACCACCAAATATACCTTTATAACAATTTTCATAACATTGTTCATGTCCTTGTTCCATTTTAAATTTTCTTCCTGAAAATTCAAATACTGGCCCCTCAGGACCTTGGGGGTGGGGGTGGGGGTGGGGGTCGGGGTGAGGCGAGCAAGGTTGGGGGTGGGGGTGGGGGTGGGGTATTTCCTCATGTGCATATGCAAGTTTGCTTGAAATAAAGATAGTAACAATGGCAATTAAAAAGATACTAGTAATATTTTTGTTAATAGCCATTATTTCTTTTAATTCCCTCTATACTTTCCTATTTTTTTCTATGAGAAAAGTTAAAAAGAGGGAATAAAAA</gDNA_template>
            <first_frame> N  K  F  I  I  F  M  P  S  E  N  V  F  H  K  N  V  T  Y  T  Y  D  H  Q  H  T  L  V  I  K  I  Y  M  T  *  N  Q  K  *  K  *  K  C  A  S  I  *  S  R  S  K  Y  N  L  F  L  T  P  Q  K  *  L  E  *  H  L  I  E  R  A  *  L  R  L  F  S  I  R  *  N  *  N  *  T  Y  S  *  G  G  G  G  L  K  V  G  N  A  N  L  P  W  L  W  H  I  S  *  H  S  C  S  A  Y  N  G  L  P  S  P  P  N  I  P  L  *  Q  F  S  *  H  C  S  C  P  C  S  I  L  N  F  L  P  E  N  S  N  T  G  P  S  G  P  W  G  W  G  W  G  W  G  S  G  *  G  E  Q  G  W  G  W  G  W  G  W  G  I  S  S  C  A  Y  A  S  L  L  E  I  K  I  V  T  M  A  I  K  K  I  L  V  I  F  L  L  I  A  I  I  S  F  N  S  L  Y  T  F  L  F  F  S  M  R  K  V  K  K  R  E  *  K </first_frame>
            <second_frame>  I  S  S  S  Y  S  C  Q  V  K  M  Y  F  I  K  M  L  H  I  H  M  I  T  N  I  H  W  L  *  K  F  I  *  H  E  I  K  N  K  N  K  N  V  P  P  Y  N  R  D  Q  N  I  T  S  F  *  L  L  K  N  S  S  N  N  I  *  L  S  E  R  S  L  G  Y  S  R  Y  V  E  I  E  I  K  L  I  V  E  E  E  E  D  *  K  L  G  M  Q  I  Y  H  G  Y  G  T  Y  H  S  I  L  V  Q  H  I  M  D  F  L  H  H  Q  I  Y  L  Y  N  N  F  H  N  I  V  H  V  L  V  P  F  *  I  F  F  L  K  I  Q  I  L  A  P  Q  D  L  G  G  G  G  G  G  G  G  R  G  E  A  S  K  V  G  G  G  G  G  G  G  V  F  P  H  V  H  M  Q  V  C  L  K  *  R  *  *  Q  W  Q  L  K  R  Y  *  *  Y  F  C  *  *  P  L  F  L  L  I  P  S  I  L  S  Y  F  F  L  *  E  K  L  K  R  G  N  K   </second_frame>
            <third_frame>   *  V  H  H  I  H  A  K  *  K  C  I  S  *  K  C  Y  I  Y  I  *  S  P  T  Y  I  G  Y  K  N  L  Y  D  M  K  S  K  I  K  I  K  M  C  L  H  I  I  A  I  K  I  *  P  L  F  N  S  S  K  I  A  R  I  T  F  D  *  A  S  V  A  *  V  I  L  D  T  L  K  L  K  L  N  L  *  L  R  R  R  R  T  K  S  W  E  C  K  F  T  M  V  M  A  H  I  I  A  F  L  F  S  I  *  W  T  S  F  T  T  K  Y  T  F  I  T  I  F  I  T  L  F  M  S  L  F  H  F  K  F  S  S  *  K  F  K  Y  W  P  L  R  T  L  G  V  G  V  G  V  G  V  G  V  R  R  A  R  L  G  V  G  V  G  V  G  Y  F  L  M  C  I  C  K  F  A  *  N  K  D  S  N  N  G  N  *  K  D  T  S  N  I  F  V  N  S  H  Y  F  F  *  F  P  L  Y  F  P  I  F  F  Y  E  K  S  *  K  E  G  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87216" stop="87022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEQGWGWGWGWGISSCAYASLLEIKIVTMAIKKILVIFLLIAIISFNSLYTFLFFSMRKVKKRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87039" PGL_stop="87689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87039" e_stop="87689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="87039" e_stop="87689" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87039" stop="87684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87040" stop="87196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87187" stop="87689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTCATAGAAAAAAATAGGAAAGTATAGAGGGAATTAAAAGAAATAATGGCTATTAACAAAAATATTACTAGTATCTTTTTAATTGCCATTGTTACTATCTTTATTTCAAGCAAACTTGCATATGCACATGAGGAAATACCCCACCCCCACCCCCACCCCCAACCTTGCTCGCCTCACCCCGACCCCCACCCCCACCCCCACCCCCAAGGTCCTGAGGGGCCAGTATTTGAATTTTCAGGAAGAAAATTTAAAATGGAACAAGGACATGAACAATGTTATGAAAATTGTTATAAAGGTATATTTGGTGGTGAAGGAAGTCCATTATATGCTGAACAAGAATGCTATGATATGTGCCATAACCATGGTAAATTTGCATTCCCAACTTTTAGTCCTCCTCCTCCTCAACTATAAGTTTAATTTCAATTTCAACGTATCGAGAATAACCTAAGCTACGCTCGCTCAATCAAATGTTATTCGAGCTATTTTTGAGGAGTTAAAAAGAGGTTATATTTTGATCGCGATTATATGGAGGCACATTTTTATTTTTATTTTTGATTTCATGTCATATAAATTTTTATAACCAATGTATGTTGGTGATCATATGTATATGTAACATTTTTATGAAATACATTTTCACTTGGCATGA</gDNA_template>
            <first_frame> L  F  S  *  K  K  I  G  K  Y  R  G  N  *  K  K  *  W  L  L  T  K  I  L  L  V  S  F  *  L  P  L  L  L  S  L  F  Q  A  N  L  H  M  H  M  R  K  Y  P  T  P  T  P  T  P  N  L  A  R  L  T  P  T  P  T  P  T  P  T  P  K  V  L  R  G  Q  Y  L  N  F  Q  E  E  N  L  K  W  N  K  D  M  N  N  V  M  K  I  V  I  K  V  Y  L  V  V  K  E  V  H  Y  M  L  N  K  N  A  M  I  C  A  I  T  M  V  N  L  H  S  Q  L  L  V  L  L  L  L  N  Y  K  F  N  F  N  F  N  V  S  R  I  T  *  A  T  L  A  Q  S  N  V  I  R  A  I  F  E  E  L  K  R  G  Y  I  L  I  A  I  I  W  R  H  I  F  I  F  I  F  D  F  M  S  Y  K  F  L  *  P  M  Y  V  G  D  H  M  Y  M  *  H  F  Y  E  I  H  F  H  L  A  * </first_frame>
            <second_frame>  F  S  H  R  K  K  *  E  S  I  E  G  I  K  R  N  N  G  Y  *  Q  K  Y  Y  *  Y  L  F  N  C  H  C  Y  Y  L  Y  F  K  Q  T  C  I  C  T  *  G  N  T  P  P  P  P  P  P  P  T  L  L  A  S  P  R  P  P  P  P  P  P  P  P  R  S  *  G  A  S  I  *  I  F  R  K  K  I  *  N  G  T  R  T  *  T  M  L  *  K  L  L  *  R  Y  I  W  W  *  R  K  S  I  I  C  *  T  R  M  L  *  Y  V  P  *  P  W  *  I  C  I  P  N  F  *  S  S  S  S  S  T  I  S  L  I  S  I  S  T  Y  R  E  *  P  K  L  R  S  L  N  Q  M  L  F  E  L  F  L  R  S  *  K  E  V  I  F  *  S  R  L  Y  G  G  T  F  L  F  L  F  L  I  S  C  H  I  N  F  Y  N  Q  C  M  L  V  I  I  C  I  C  N  I  F  M  K  Y  I  F  T  W  H   </second_frame>
            <third_frame>   F  L  I  E  K  N  R  K  V  *  R  E  L  K  E  I  M  A  I  N  K  N  I  T  S  I  F  L  I  A  I  V  T  I  F  I  S  S  K  L  A  Y  A  H  E  E  I  P  H  P  H  P  H  P  Q  P  C  S  P  H  P  D  P  H  P  H  P  H  P  Q  G  P  E  G  P  V  F  E  F  S  G  R  K  F  K  M  E  Q  G  H  E  Q  C  Y  E  N  C  Y  K  G  I  F  G  G  E  G  S  P  L  Y  A  E  Q  E  C  Y  D  M  C  H  N  H  G  K  F  A  F  P  T  F  S  P  P  P  P  Q  L  *  V  *  F  Q  F  Q  R  I  E  N  N  L  S  Y  A  R  S  I  K  C  Y  S  S  Y  F  *  G  V  K  K  R  L  Y  F  D  R  D  Y  M  E  A  H  F  Y  F  Y  F  *  F  H  V  I  *  I  F  I  T  N  V  C  W  *  S  Y  V  Y  V  T  F  L  *  N  T  F  S  L  G  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87071" stop="87454"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RELKEIMAINKNITSIFLIAIVTIFISSKLAYAHEEIPHPHPHPQPCSPHPDPHPHPHPQGPEGPVFEFSGRKFKMEQGHEQCYENCYKGIFGGEGSPLYAEQECYDMCHNHGKFAFPTFSPPPPQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87126" stop="87491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLLLSLFQANLHMHMRKYPTPTPTPNLARLTPTPTPTPTPKVLRGQYLNFQEENLKWNKDMNNVMKIVIKVYLVVKEVHYMLNKNAMICAITMVNLHSQLLVLLLLNYKFNFNFNVSRIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="89312" PGL_stop="97293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89312" e_stop="89565"/>
            <exon e_start="91570" e_stop="91699"/>
            <exon e_start="91815" e_stop="91926"/>
            <exon e_start="94081" e_stop="94156"/>
            <exon e_start="94274" e_stop="94362"/>
            <exon e_start="94945" e_stop="95031"/>
            <exon e_start="95754" e_stop="95870"/>
            <exon e_start="95977" e_stop="96084"/>
            <exon e_start="96187" e_stop="96240"/>
            <exon e_start="96379" e_stop="96531"/>
            <exon e_start="96765" e_stop="97293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.557" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89312" e_stop="89565" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.557">
            <gDNA_intron_boundary i_start="89566" i_stop="91569" i_length="2004"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91570" e_stop="91699" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="91700" i_stop="91814" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91815" e_stop="91926" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.874">
            <gDNA_intron_boundary i_start="91927" i_stop="94080" i_length="2154"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94081" e_stop="94156" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.475" acc_prob="0.988">
            <gDNA_intron_boundary i_start="94157" i_stop="94273" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94274" e_stop="94362" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.981">
            <gDNA_intron_boundary i_start="94363" i_stop="94944" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94945" e_stop="95031" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.857">
            <gDNA_intron_boundary i_start="95032" i_stop="95753" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95754" e_stop="95870" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95871" i_stop="95976" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="95977" e_stop="96084" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96085" i_stop="96186" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96187" e_stop="96240" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="96241" i_stop="96378" i_length="138"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96379" e_stop="96531" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96532" i_stop="96764" i_length="233"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="96765" e_stop="97293" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89312" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89312" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89330" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95870"/>
              <exon start="95977" stop="96084"/>
              <exon start="96187" stop="96240"/>
              <exon start="96379" stop="96531"/>
              <exon start="96765" stop="97066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89331" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89333" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89334" stop="89565"/>
              <exon start="91570" stop="91679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89335" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="94989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89336" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89338" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89345" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89348" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95870"/>
              <exon start="95977" stop="96067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89350" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89354" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89361" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89362" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="94977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89362" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89362" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89392" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89392" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89514" stop="89565"/>
              <exon start="91570" stop="91699"/>
              <exon start="91815" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91840" stop="91926"/>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95870"/>
              <exon start="95977" stop="96084"/>
              <exon start="96187" stop="96240"/>
              <exon start="96379" stop="96408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94081" stop="94156"/>
              <exon start="94274" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95870"/>
              <exon start="95977" stop="96084"/>
              <exon start="96187" stop="96201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94286" stop="94362"/>
              <exon start="94945" stop="95031"/>
              <exon start="95754" stop="95870"/>
              <exon start="95977" stop="96084"/>
              <exon start="96187" stop="96240"/>
              <exon start="96379" stop="96453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96026" stop="96084"/>
              <exon start="96187" stop="96240"/>
              <exon start="96379" stop="96531"/>
              <exon start="96765" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96380" stop="96531"/>
              <exon start="96765" stop="97075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96380" stop="96531"/>
              <exon start="96765" stop="97075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96380" stop="96531"/>
              <exon start="96765" stop="97075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96464" stop="96531"/>
              <exon start="96765" stop="97293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96527" stop="96531"/>
              <exon start="96765" stop="97085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415286" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96947" stop="97235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCAGTTTGCTTCAGCTCACATTCTTCATCAATGGCGGCTTCTTCTTCTTCTTTACAATTCACTGCAACTCCTTTTAACCAATTTCATTCCAAAAAAGTACCCAAACACGCCACTAAATGGGGTACTATTCGCTGTTCCGCTTCTTCACCCAGCAAAAGCTACAACATTACTCTTCTTCCCGGCGATGGTATTGGACCTGAAGTAATTTCTGTTGCCAAAAATGCCCTCCAACTTGTCTCCTCCATTGAAG : GATTTGAAGTTGCATTCGAGGAGATGCCAATGGGAGGGGCTGCATTGGATGCTGTAGGGGTACCATTGCCTGATGAGACTCTTAATTCTGCAAAGAAATCTGATGCTACTCTTCTTGGAGCAATTGGAGG : ATATAAATGGGACAAAAATGAAAAACATTTGAAGCCCGAGACTGGATTGCTTCAACTTCGAGAAGGTTTGCAGGTCTTTGCTAACTTGAGACCAGCCACTGTTTTACCACAG : TTAGTAGATGCTTCAACTTTGAAGAAAGAAGTTGCTGAAGGTGTAGACCTAATGGTTGTTAGGGAACTTACTGGAG : GTATTTATTTTGGCAAACCAAGAGGATTCAGCACTGATAAAAATGGTCAGGAAATAGGTTTCAACACTGAAGTGTATGCAGCATATGAG : ATCGAAAGAATTGCTCGTATTGCATTTGAAACTGCAAGGAAGCGAAGAGGAAAACTATGTAGCGTGGATAAAGCAAATGTATTGGAG : GCCTCTATGCTTTGGAGGAAGATAGTTACAGCGTTAGCCTCAGAGTATCCTGATGTAGAGCTCTCTCACATGTATGTTGATAATGCAGCCATGCAACTTGTTCGCAACCCAAAACAG : TTTGATACAATTGTGACAAACAACATATTTGGTGACATCCTGTCCGATGAAGCATCAATGATTACAGGAAGTATCGGGATGCTTCCATCTGCCAGTCTTGGTGCAGCG : GGACCTGGATTATTTGAACCTATACATGGTTCTGCTCCTGATATTGCTGGGCAG : GATAAAGCAAACCCTTTGGCAACAATGCTCAGTGCTGCTATGCTTCTGAAGTATGGCCTAGGTGAGGAGAAGGCTGCTCAGAGAATTGAAGCAGCTGTTTTAGACACCTTAAATCGAGGATTCCGTACTGGTGACATTCACTCAGCAGGACAT : AAATTGGTCGGATGCAAGGAAATGGGTGAAGAAGTGCTCAAGTCTATCGACAGCAAAACTCCTGCTGCTGTTTAATTTTCTTAAGAGGAGGCTTCATTGAGACCTCAACAAATGATCATTTTGGCAGATGCATTTGCAGTCAGTATATAATTTGCCATTTATGCAACTGTTTGAAGGATTCAAAATTGCTGAGTGTTGTATCGTAGCCTAAACGTCTCGATTCTTTTCTCTGATGTTTTTGAGACATTATCCTGTTGTAACATGAAGTGAACCTTGGAGCAACAGTAAAGTTGTTTTAACGAGTTCAAGTTATGGAATCAACTGGTGTTGCTTGCATTAGGATAGACTGTCTACTCTACTTCTCCTTAGACCCTATGTGAACACGAAATGCTCTGTGCATCGGGCTGTCCTTTTTATTTTGTTGTAACATGGAAAAAGCAATGAAAATAAGCATTTTTGCACCTTGGGAAAACTGGAATGGAACAATTGTAACCAGATGTTGTTGTGGTTGCTACATTGTCTCTATCTT</gDNA_template>
            <first_frame> K  F  S  L  L  Q  L  T  F  F  I  N  G  G  F  F  F  F  F  T  I  H  C  N  S  F  *  P  I  S  F  Q  K  S  T  Q  T  R  H  *  M  G  Y  Y  S  L  F  R  F  F  T  Q  Q  K  L  Q  H  Y  S  S  S  R  R  W  Y  W  T  *  S  N  F  C  C  Q  K  C  P  P  T  C  L  L  H  *  R :   I  *  S  C  I  R  G  D  A  N  G  R  G  C  I  G  C  C  R  G  T  I  A  *  *  D  S  *  F  C  K  E  I  *  C  Y  S  S  W  S  N  W  R  :  I  *  M  G  Q  K  *  K  T  F  E  A  R  D  W  I  A  S  T  S  R  R  F  A  G  L  C  *  L  E  T  S  H  C  F  T  T   : V  S  R  C  F  N  F  E  E  R  S  C  *  R  C  R  P  N  G  C  *  G  T  Y  W  R :   Y  L  F  W  Q  T  K  R  I  Q  H  *  *  K  W  S  G  N  R  F  Q  H  *  S  V  C  S  I  *   : D  R  K  N  C  S  Y  C  I  *  N  C  K  E  A  K  R  K  T  M  *  R  G  *  S  K  C  I  G   : G  L  Y  A  L  E  E  D  S  Y  S  V  S  L  R  V  S  *  C  R  A  L  S  H  V  C  *  *  C  S  H  A  T  C  S  Q  P  K  T   : V  *  Y  N  C  D  K  Q  H  I  W  *  H  P  V  R  *  S  I  N  D  Y  R  K  Y  R  D  A  S  I  C  Q  S  W  C  S   : G  T  W  I  I  *  T  Y  T  W  F  C  S  *  Y  C  W  A   : G  *  S  K  P  F  G  N  N  A  Q  C  C  Y  A  S  E  V  W  P  R  *  G  E  G  C  S  E  N  *  S  S  C  F  R  H  L  K  S  R  I  P  Y  W  *  H  S  L  S  R  T   : *  I  G  R  M  Q  G  N  G  *  R  S  A  Q  V  Y  R  Q  Q  N  S  C  C  C  L  I  F  L  R  G  G  F  I  E  T  S  T  N  D  H  F  G  R  C  I  C  S  Q  Y  I  I  C  H  L  C  N  C  L  K  D  S  K  L  L  S  V  V  S  *  P  K  R  L  D  S  F  L  *  C  F  *  D  I  I  L  L  *  H  E  V  N  L  G  A  T  V  K  L  F  *  R  V  Q  V  M  E  S  T  G  V  A  C  I  R  I  D  C  L  L  Y  F  S  L  D  P  M  *  T  R  N  A  L  C  I  G  L  S  F  L  F  C  C  N  M  E  K  A  M  K  I  S  I  F  A  P  W  E  N  W  N  G  T  I  V  T  R  C  C  C  G  C  Y  I  V  S  I   </first_frame>
            <second_frame>  N  S  V  C  F  S  S  H  S  S  S  M  A  A  S  S  S  S  L  Q  F  T  A  T  P  F  N  Q  F  H  S  K  K  V  P  K  H  A  T  K  W  G  T  I  R  C  S  A  S  S  P  S  K  S  Y  N  I  T  L  L  P  G  D  G  I  G  P  E  V  I  S  V  A  K  N  A  L  Q  L  V  S  S  I  E   : G  F  E  V  A  F  E  E  M  P  M  G  G  A  A  L  D  A  V  G  V  P  L  P  D  E  T  L  N  S  A  K  K  S  D  A  T  L  L  G  A  I  G  G :   Y  K  W  D  K  N  E  K  H  L  K  P  E  T  G  L  L  Q  L  R  E  G  L  Q  V  F  A  N  L  R  P  A  T  V  L  P  Q  :  L  V  D  A  S  T  L  K  K  E  V  A  E  G  V  D  L  M  V  V  R  E  L  T  G   : G  I  Y  F  G  K  P  R  G  F  S  T  D  K  N  G  Q  E  I  G  F  N  T  E  V  Y  A  A  Y  E  :  I  E  R  I  A  R  I  A  F  E  T  A  R  K  R  R  G  K  L  C  S  V  D  K  A  N  V  L  E  :  A  S  M  L  W  R  K  I  V  T  A  L  A  S  E  Y  P  D  V  E  L  S  H  M  Y  V  D  N  A  A  M  Q  L  V  R  N  P  K  Q  :  F  D  T  I  V  T  N  N  I  F  G  D  I  L  S  D  E  A  S  M  I  T  G  S  I  G  M  L  P  S  A  S  L  G  A  A  :  G  P  G  L  F  E  P  I  H  G  S  A  P  D  I  A  G  Q  :  D  K  A  N  P  L  A  T  M  L  S  A  A  M  L  L  K  Y  G  L  G  E  E  K  A  A  Q  R  I  E  A  A  V  L  D  T  L  N  R  G  F  R  T  G  D  I  H  S  A  G  H  :  K  L  V  G  C  K  E  M  G  E  E  V  L  K  S  I  D  S  K  T  P  A  A  V  *  F  S  *  E  E  A  S  L  R  P  Q  Q  M  I  I  L  A  D  A  F  A  V  S  I  *  F  A  I  Y  A  T  V  *  R  I  Q  N  C  *  V  L  Y  R  S  L  N  V  S  I  L  F  S  D  V  F  E  T  L  S  C  C  N  M  K  *  T  L  E  Q  Q  *  S  C  F  N  E  F  K  L  W  N  Q  L  V  L  L  A  L  G  *  T  V  Y  S  T  S  P  *  T  L  C  E  H  E  M  L  C  A  S  G  C  P  F  Y  F  V  V  T  W  K  K  Q  *  K  *  A  F  L  H  L  G  K  T  G  M  E  Q  L  *  P  D  V  V  V  V  A  T  L  S  L  S  </second_frame>
            <third_frame>   I  Q  F  A  S  A  H  I  L  H  Q  W  R  L  L  L  L  L  Y  N  S  L  Q  L  L  L  T  N  F  I  P  K  K  Y  P  N  T  P  L  N  G  V  L  F  A  V  P  L  L  H  P  A  K  A  T  T  L  L  F  F  P  A  M  V  L  D  L  K  *  F  L  L  P  K  M  P  S  N  L  S  P  P  L  K  :  D  L  K  L  H  S  R  R  C  Q  W  E  G  L  H  W  M  L  *  G  Y  H  C  L  M  R  L  L  I  L  Q  R  N  L  M  L  L  F  L  E  Q  L  E   : D  I  N  G  T  K  M  K  N  I  *  S  P  R  L  D  C  F  N  F  E  K  V  C  R  S  L  L  T  *  D  Q  P  L  F  Y  H  S :   *  *  M  L  Q  L  *  R  K  K  L  L  K  V  *  T  *  W  L  L  G  N  L  L  E  :  V  F  I  L  A  N  Q  E  D  S  A  L  I  K  M  V  R  K  *  V  S  T  L  K  C  M  Q  H  M  R :   S  K  E  L  L  V  L  H  L  K  L  Q  G  S  E  E  E  N  Y  V  A  W  I  K  Q  M  Y  W  R :   P  L  C  F  G  G  R  *  L  Q  R  *  P  Q  S  I  L  M  *  S  S  L  T  C  M  L  I  M  Q  P  C  N  L  F  A  T  Q  N  S :   L  I  Q  L  *  Q  T  T  Y  L  V  T  S  C  P  M  K  H  Q  *  L  Q  E  V  S  G  C  F  H  L  P  V  L  V  Q  R :   D  L  D  Y  L  N  L  Y  M  V  L  L  L  I  L  L  G  R :   I  K  Q  T  L  W  Q  Q  C  S  V  L  L  C  F  *  S  M  A  *  V  R  R  R  L  L  R  E  L  K  Q  L  F  *  T  P  *  I  E  D  S  V  L  V  T  F  T  Q  Q  D  I :   N  W  S  D  A  R  K  W  V  K  K  C  S  S  L  S  T  A  K  L  L  L  L  F  N  F  L  K  R  R  L  H  *  D  L  N  K  *  S  F  W  Q  M  H  L  Q  S  V  Y  N  L  P  F  M  Q  L  F  E  G  F  K  I  A  E  C  C  I  V  A  *  T  S  R  F  F  S  L  M  F  L  R  H  Y  P  V  V  T  *  S  E  P  W  S  N  S  K  V  V  L  T  S  S  S  Y  G  I  N  W  C  C  L  H  *  D  R  L  S  T  L  L  L  L  R  P  Y  V  N  T  K  C  S  V  H  R  A  V  L  F  I  L  L  *  H  G  K  S  N  E  N  K  H  F  C  T  L  G  K  L  E  W  N  N  C  N  Q  M  L  L  W  L  L  H  C  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89313" stop="89565"/>
                    <exon start="91570" stop="91699"/>
                    <exon start="91815" stop="91926"/>
                    <exon start="94081" stop="94156"/>
                    <exon start="94274" stop="94362"/>
                    <exon start="94945" stop="95031"/>
                    <exon start="95754" stop="95870"/>
                    <exon start="95977" stop="96084"/>
                    <exon start="96187" stop="96240"/>
                    <exon start="96379" stop="96531"/>
                    <exon start="96765" stop="96839"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVCFSSHSSSMAASSSSLQFTATPFNQFHSKKVPKHATKWGTIRCSASSPSKSYNITLLPGDGIGPEVISVAKNALQLVSSIEGFEVAFEEMPMGGAALDAVGVPLPDETLNSAKKSDATLLGAIGGYKWDKNEKHLKPETGLLQLREGLQVFANLRPATVLPQLVDASTLKKEVAEGVDLMVVRELTGGIYFGKPRGFSTDKNGQEIGFNTEVYAAYEIERIARIAFETARKRRGKLCSVDKANVLEASMLWRKIVTALASEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGAAGPGLFEPIHGSAPDIAGQDKANPLATMLSAAMLLKYGLGEEKAAQRIEAAVLDTLNRGFRTGDIHSAGHKLVGCKEMGEEVLKSIDSKTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92574" e_stop="93024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="92574" e_stop="93024" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92574" stop="93024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCAGGGGAGTGAGCCCAACAGATGTTTGGACATTAAAAAAATGATTAAAAGATAAAAATCTGTAGAATATATTTTTAAAATTTCGTAAAATTCTTCAGAAAGAAATGCACAACGTTAATTTGTTGTGTGCGCATAATAATTTGAAGAATTTAAAGTTCTTTTTTGTTTGTTTATAGAATTGTAAGTTACCTAAATGCTAATTATAGAATAACATATTAGTTATGATCAAATACTTAAAACAAAGATTAAAACTGAAGTATTTGACGTGTATTGAGTGGACGATTCAAGACATGGAAGTATTTTACTAGGCATCCATGGAGCATATCAAGTTAACAACACAAGGTTAAAGTAAACTGTGCATGTGAATGCCCCTCTTATCCAAGCGTATCCTACATGACTTAAGAACTCAATGGTTGCCTCAGGCGTTTAGAGGTTGTCTCGTCTCAAG</gDNA_template>
            <first_frame> L  P  G  E  *  A  Q  Q  M  F  G  H  *  K  N  D  *  K  I  K  I  C  R  I  Y  F  *  N  F  V  K  F  F  R  K  K  C  T  T  L  I  C  C  V  R  I  I  I  *  R  I  *  S  S  F  L  F  V  Y  R  I  V  S  Y  L  N  A  N  Y  R  I  T  Y  *  L  *  S  N  T  *  N  K  D  *  N  *  S  I  *  R  V  L  S  G  R  F  K  T  W  K  Y  F  T  R  H  P  W  S  I  S  S  *  Q  H  K  V  K  V  N  C  A  C  E  C  P  S  Y  P  S  V  S  Y  M  T  *  E  L  N  G  C  L  R  R  L  E  V  V  S  S  Q  </first_frame>
            <second_frame>  F  Q  G  S  E  P  N  R  C  L  D  I  K  K  M  I  K  R  *  K  S  V  E  Y  I  F  K  I  S  *  N  S  S  E  R  N  A  Q  R  *  F  V  V  C  A  *  *  F  E  E  F  K  V  L  F  C  L  F  I  E  L  *  V  T  *  M  L  I  I  E  *  H  I  S  Y  D  Q  I  L  K  T  K  I  K  T  E  V  F  D  V  Y  *  V  D  D  S  R  H  G  S  I  L  L  G  I  H  G  A  Y  Q  V  N  N  T  R  L  K  *  T  V  H  V  N  A  P  L  I  Q  A  Y  P  T  *  L  K  N  S  M  V  A  S  G  V  *  R  L  S  R  L  K </second_frame>
            <third_frame>   S  R  G  V  S  P  T  D  V  W  T  L  K  K  *  L  K  D  K  N  L  *  N  I  F  L  K  F  R  K  I  L  Q  K  E  M  H  N  V  N  L  L  C  A  H  N  N  L  K  N  L  K  F  F  F  V  C  L  *  N  C  K  L  P  K  C  *  L  *  N  N  I  L  V  M  I  K  Y  L  K  Q  R  L  K  L  K  Y  L  T  C  I  E  W  T  I  Q  D  M  E  V  F  Y  *  A  S  M  E  H  I  K  L  T  T  Q  G  *  S  K  L  C  M  *  M  P  L  L  S  K  R  I  L  H  D  L  R  T  Q  W  L  P  Q  A  F  R  G  C  L  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0118J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="98880" PGL_stop="105371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98880" e_stop="99158"/>
            <exon e_start="99665" e_stop="99760"/>
            <exon e_start="101143" e_stop="101249"/>
            <exon e_start="101709" e_stop="101757"/>
            <exon e_start="101933" e_stop="102045"/>
            <exon e_start="103963" e_stop="104057"/>
            <exon e_start="104299" e_stop="104387"/>
            <exon e_start="104481" e_stop="104575"/>
            <exon e_start="104657" e_stop="105199"/>
            <exon e_start="105361" e_stop="105371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.233" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98880" e_stop="99158" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="99159" i_stop="99664" i_length="506"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99665" e_stop="99760" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.939">
            <gDNA_intron_boundary i_start="99761" i_stop="101142" i_length="1382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101143" e_stop="101249" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="101250" i_stop="101708" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101709" e_stop="101757" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.859">
            <gDNA_intron_boundary i_start="101758" i_stop="101932" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101933" e_stop="102045" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.981">
            <gDNA_intron_boundary i_start="102046" i_stop="103962" i_length="1917"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103963" e_stop="104057" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="104058" i_stop="104298" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104299" e_stop="104387" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.895">
            <gDNA_intron_boundary i_start="104388" i_stop="104480" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104481" e_stop="104575" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.819" acc_prob="0.962">
            <gDNA_intron_boundary i_start="104576" i_stop="104656" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="104657" e_stop="105199" e_length="543"/>
          </exon>
          <intron i_serial="9" don_prob="0.233" acc_prob="0.948">
            <gDNA_intron_boundary i_start="105200" i_stop="105360" i_length="161"/>
          </intron>
          <exon e_serial="10" e_score="0.545">
            <gDNA_exon_boundary e_start="105361" e_stop="105371" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98880" stop="99158"/>
              <exon start="99665" stop="99760"/>
              <exon start="101143" stop="101249"/>
              <exon start="101709" stop="101757"/>
              <exon start="101933" stop="102045"/>
              <exon start="103963" stop="104057"/>
              <exon start="104299" stop="104375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98884" stop="99158"/>
              <exon start="99665" stop="99760"/>
              <exon start="101143" stop="101249"/>
              <exon start="101709" stop="101757"/>
              <exon start="101933" stop="102045"/>
              <exon start="103963" stop="104057"/>
              <exon start="104299" stop="104387"/>
              <exon start="104481" stop="104575"/>
              <exon start="104657" stop="105199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98891" stop="99158"/>
              <exon start="99665" stop="99760"/>
              <exon start="101143" stop="101249"/>
              <exon start="101709" stop="101757"/>
              <exon start="101933" stop="102045"/>
              <exon start="103963" stop="104057"/>
              <exon start="104299" stop="104323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98899" stop="99158"/>
              <exon start="99665" stop="99760"/>
              <exon start="101143" stop="101249"/>
              <exon start="101709" stop="101757"/>
              <exon start="101933" stop="102045"/>
              <exon start="103963" stop="104033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98900" stop="99158"/>
              <exon start="99665" stop="99760"/>
              <exon start="101143" stop="101249"/>
              <exon start="101709" stop="101757"/>
              <exon start="101933" stop="102045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104684" stop="105199"/>
              <exon start="105361" stop="105371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104708" stop="105199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104859" stop="105199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCTAACTCGTCCAAGACGTCAGTGGACCGGTCATTCTTCTTGAAAACCCAAAAGGGTATTTGTATATGATGAAACCCCACCTGGGTTTTTGCTAAATCTTCAAAGGGTTCTTTAAATTCTTGAAAAAAGAGTGATTTTTTCAGTTTTTTTTCAATATTTTTGCTGTTGTTTGGGTTGTTGAGGTAAAGTTTTCCGGCAAGAATGACCACCGCCGGCGCCGGCGACCTTAAGAGTGTTAGAGGTATCATATGTGAAGTTGGTGCTGGTGCTTCTGCAG : GTGCCATTGCTGCTACATTTATGTGTCCATTGGATGTTATTAAGACAAGACTGCAAGTACATGGTCTGCCTCAGGTTTCTCAATCTGCTCGTCAAG : GTAGTGTCATTGTCACAAGCTTACAGAATATACTAAGAACAGAAGGTTTCAGGGGACTTTATCGAGGCCTTTCACCAACATTGACAGCTCTTCTTCCGAACTGGGCG : GTGTACTTCACAGTTTATGAACATCTCAAGGATTCGTTGCATTCACATG : TGGATAGCAGTGGGCAGCTTACGATTGGTGCAAACATGCTTGCAGCTGCGGGGGCGGGGGCTGCAACATCCATTACAACAAATCCATTGTGGGTTGTTAAGACCCGGCTCATG : ACACAGGGAATGAGGGAGGGTGTAGTTCCTTATAAAGGTATATTGTCTGCTTTAATACGAATAACACATGAAGAAGGGATCCGCGGATTGTACAG : TGGCCTCTTGCCGTCATTGGCTGGGATTAGTCATGTTGCTATCCAATTTCCAGCATATGAAAAGCTGAAATCGTACTTGGCAAAAAGGG : CCAATAAGCATACCAATGAACTAAACTCTGGTGAAGTAGCAATTGCCTCTTCGATGGCAAAAATACTTGCCTCTGTAATGACTTATCCACATGAG : GTCGTTCGTTCTAAACTTCAAGAACAAGGGCAAGTAAGAAACTCAGAGAAAGCATATAATGGGGTTGTCGATTGTGTAAAAAAGATGTTCAAACAGGAACGTCTGACTGCATTCTACCGGGGTTGTGGAACCAATCTTCTAAGGACCACACCCTCTGCTGTTATTACATTTACCAGTTATGAAATGATCCACAAAATACTTCAACGAGCTATACTTCCAGAAAAGGATTCAGAACCAAATCCTAGACGTAAATCCCATAAGGTAGCCGAAGAACATGGAGACAATGATGAAAAATTACAACAATCAGAAAGCACATCAAATAAGAGAACTCCTTTAATTCCATTGAGTAACTCTGATAATCTAACTGCTAGACATTGATTAGAGATGTTTCTCTTTTTCTTTTTTTTTTTTTTTGTCGTGGAAGCAATTTGCAACAAGTGTTTGCTGTTGCACAATTTTTTTTATTTTGTATCTTACTATTTTGGGTGAAGAAAGTTTTATATTTCGATCTAATAAAGAAGGGCGCGGATAGTTTCCCTCTGA : ACAATTAATTA</gDNA_template>
            <first_frame> P  L  T  R  P  R  R  Q  W  T  G  H  S  S  *  K  P  K  R  V  F  V  Y  D  E  T  P  P  G  F  L  L  N  L  Q  R  V  L  *  I  L  E  K  R  V  I  F  S  V  F  F  Q  Y  F  C  C  C  L  G  C  *  G  K  V  F  R  Q  E  *  P  P  P  A  P  A  T  L  R  V  L  E  V  S  Y  V  K  L  V  L  V  L  L  Q  :  V  P  L  L  L  H  L  C  V  H  W  M  L  L  R  Q  D  C  K  Y  M  V  C  L  R  F  L  N  L  L  V  K  :  V  V  S  L  S  Q  A  Y  R  I  Y  *  E  Q  K  V  S  G  D  F  I  E  A  F  H  Q  H  *  Q  L  F  F  R  T  G  R :   C  T  S  Q  F  M  N  I  S  R  I  R  C  I  H  M  :  W  I  A  V  G  S  L  R  L  V  Q  T  C  L  Q  L  R  G  R  G  L  Q  H  P  L  Q  Q  I  H  C  G  L  L  R  P  G  S  * :   H  R  E  *  G  R  V  *  F  L  I  K  V  Y  C  L  L  *  Y  E  *  H  M  K  K  G  S  A  D  C  T   : V  A  S  C  R  H  W  L  G  L  V  M  L  L  S  N  F  Q  H  M  K  S  *  N  R  T  W  Q  K  G  :  P  I  S  I  P  M  N  *  T  L  V  K  *  Q  L  P  L  R  W  Q  K  Y  L  P  L  *  *  L  I  H  M  R :   S  F  V  L  N  F  K  N  K  G  K  *  E  T  Q  R  K  H  I  M  G  L  S  I  V  *  K  R  C  S  N  R  N  V  *  L  H  S  T  G  V  V  E  P  I  F  *  G  P  H  P  L  L  L  L  H  L  P  V  M  K  *  S  T  K  Y  F  N  E  L  Y  F  Q  K  R  I  Q  N  Q  I  L  D  V  N  P  I  R  *  P  K  N  M  E  T  M  M  K  N  Y  N  N  Q  K  A  H  Q  I  R  E  L  L  *  F  H  *  V  T  L  I  I  *  L  L  D  I  D  *  R  C  F  S  F  S  F  F  F  F  L  S  W  K  Q  F  A  T  S  V  C  C  C  T  I  F  F  I  L  Y  L  T  I  L  G  E  E  S  F  I  F  R  S  N  K  E  G  R  G  *  F  P  S  E :   Q  L  I  </first_frame>
            <second_frame>  P  *  L  V  Q  D  V  S  G  P  V  I  L  L  E  N  P  K  G  Y  L  Y  M  M  K  P  H  L  G  F  C  *  I  F  K  G  F  F  K  F  L  K  K  E  *  F  F  Q  F  F  F  N  I  F  A  V  V  W  V  V  E  V  K  F  S  G  K  N  D  H  R  R  R  R  R  P  *  E  C  *  R  Y  H  M  *  S  W  C  W  C  F  C  R :   C  H  C  C  Y  I  Y  V  S  I  G  C  Y  *  D  K  T  A  S  T  W  S  A  S  G  F  S  I  C  S  S  R :   *  C  H  C  H  K  L  T  E  Y  T  K  N  R  R  F  Q  G  T  L  S  R  P  F  T  N  I  D  S  S  S  S  E  L  G   : G  V  L  H  S  L  *  T  S  Q  G  F  V  A  F  T  C :   G  *  Q  W  A  A  Y  D  W  C  K  H  A  C  S  C  G  G  G  G  C  N  I  H  Y  N  K  S  I  V  G  C  *  D  P  A  H   : D  T  G  N  E  G  G  C  S  S  L  *  R  Y  I  V  C  F  N  T  N  N  T  *  R  R  D  P  R  I  V  Q  :  W  P  L  A  V  I  G  W  D  *  S  C  C  Y  P  I  S  S  I  *  K  A  E  I  V  L  G  K  K  G :   Q  *  A  Y  Q  *  T  K  L  W  *  S  S  N  C  L  F  D  G  K  N  T  C  L  C  N  D  L  S  T  *   : G  R  S  F  *  T  S  R  T  R  A  S  K  K  L  R  E  S  I  *  W  G  C  R  L  C  K  K  D  V  Q  T  G  T  S  D  C  I  L  P  G  L  W  N  Q  S  S  K  D  H  T  L  C  C  Y  Y  I  Y  Q  L  *  N  D  P  Q  N  T  S  T  S  Y  T  S  R  K  G  F  R  T  K  S  *  T  *  I  P  *  G  S  R  R  T  W  R  Q  *  *  K  I  T  T  I  R  K  H  I  K  *  E  N  S  F  N  S  I  E  *  L  *  *  S  N  C  *  T  L  I  R  D  V  S  L  F  L  F  F  F  F  C  R  G  S  N  L  Q  Q  V  F  A  V  A  Q  F  F  L  F  C  I  L  L  F  W  V  K  K  V  L  Y  F  D  L  I  K  K  G  A  D  S  F  P  L   : N  N  *  L </second_frame>
            <third_frame>   P  N  S  S  K  T  S  V  D  R  S  F  F  L  K  T  Q  K  G  I  C  I  *  *  N  P  T  W  V  F  A  K  S  S  K  G  S  L  N  S  *  K  K  S  D  F  F  S  F  F  S  I  F  L  L  L  F  G  L  L  R  *  S  F  P  A  R  M  T  T  A  G  A  G  D  L  K  S  V  R  G  I  I  C  E  V  G  A  G  A  S  A   : G  A  I  A  A  T  F  M  C  P  L  D  V  I  K  T  R  L  Q  V  H  G  L  P  Q  V  S  Q  S  A  R  Q   : G  S  V  I  V  T  S  L  Q  N  I  L  R  T  E  G  F  R  G  L  Y  R  G  L  S  P  T  L  T  A  L  L  P  N  W  A  :  V  Y  F  T  V  Y  E  H  L  K  D  S  L  H  S  H   : V  D  S  S  G  Q  L  T  I  G  A  N  M  L  A  A  A  G  A  G  A  A  T  S  I  T  T  N  P  L  W  V  V  K  T  R  L  M  :  T  Q  G  M  R  E  G  V  V  P  Y  K  G  I  L  S  A  L  I  R  I  T  H  E  E  G  I  R  G  L  Y  S :   G  L  L  P  S  L  A  G  I  S  H  V  A  I  Q  F  P  A  Y  E  K  L  K  S  Y  L  A  K  R   : A  N  K  H  T  N  E  L  N  S  G  E  V  A  I  A  S  S  M  A  K  I  L  A  S  V  M  T  Y  P  H  E  :  V  V  R  S  K  L  Q  E  Q  G  Q  V  R  N  S  E  K  A  Y  N  G  V  V  D  C  V  K  K  M  F  K  Q  E  R  L  T  A  F  Y  R  G  C  G  T  N  L  L  R  T  T  P  S  A  V  I  T  F  T  S  Y  E  M  I  H  K  I  L  Q  R  A  I  L  P  E  K  D  S  E  P  N  P  R  R  K  S  H  K  V  A  E  E  H  G  D  N  D  E  K  L  Q  Q  S  E  S  T  S  N  K  R  T  P  L  I  P  L  S  N  S  D  N  L  T  A  R  H  *  L  E  M  F  L  F  F  F  F  F  F  F  V  V  E  A  I  C  N  K  C  L  L  L  H  N  F  F  Y  F  V  S  Y  Y  F  G  *  R  K  F  Y  I  S  I  *  *  R  R  A  R  I  V  S  L  *  :  T  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99068" stop="99158"/>
                    <exon start="99665" stop="99760"/>
                    <exon start="101143" stop="101249"/>
                    <exon start="101709" stop="101757"/>
                    <exon start="101933" stop="102045"/>
                    <exon start="103963" stop="104057"/>
                    <exon start="104299" stop="104387"/>
                    <exon start="104481" stop="104575"/>
                    <exon start="104657" stop="105034"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPARMTTAGAGDLKSVRGIICEVGAGASAGAIAATFMCPLDVIKTRLQVHGLPQVSQSARQGSVIVTSLQNILRTEGFRGLYRGLSPTLTALLPNWAVYFTVYEHLKDSLHSHVDSSGQLTIGANMLAAAGAGAATSITTNPLWVVKTRLMTQGMREGVVPYKGILSALIRITHEEGIRGLYSGLLPSLAGISHVAIQFPAYEKLKSYLAKRANKHTNELNSGEVAIASSMAKILASVMTYPHEVVRSKLQEQGQVRNSEKAYNGVVDCVKKMFKQERLTAFYRGCGTNLLRTTPSAVITFTSYEMIHKILQRAILPEKDSEPNPRRKSHKVAEEHGDNDEKLQQSESTSNKRTPLIPLSNSDNLTARH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="106468" PGL_stop="105736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106468" e_stop="105736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="106468" e_stop="105736" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106468" stop="105736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434063" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTATCATCAAAGCGAGCTGTAGATATGAACAGACATATGCACGAGATTAATTTGGCAAACTACGCGATGAACAGGATACTAAAATCTGCATTTGATGAGGTGATTGATCCATCACTTGGATTCGAGACAGATGCTGAAGTCAGGAGGATGACAATATCAGTAGCAGAACTAGCTTTCCAGTGCTTGCAAGTTGTCAAGGACATGAGACCTACAATGGAAGAAGTACACGAAACGTTGAAGCTTATCAAATACAGTGAATGGAAAAATTATCAGAAAAAGGATATCAATAGCTGCAATACCAAGACAACAACTGTAAAAGTTCATCGTTATCCTTCTGAAACGGATGATGCTGTGTTATTGAAGAAAAACACTCCAGCTTCACCTGATACTGTGATTGATACATGGGCTAGCAGTTCCACTACAACTAGTACTGGAGGGTGATGTTTCATAAACTCATTTTCCCCCTTCATTTTAAATACATATCATGATGTCATTTTTATAGAGTTTTTTCAGCTTGTTTCAGCCTGTTCAGGAATATAGTAAATGAAGCTTTCTTAAAGTGTTAGTTATAGTCACATATGTATATGATTCCCCTTTAGACTATGTTGCTCGGATTCCCCTAAAGTGTTGCTGCACGTGTGTCTGATCCTCCAAAAATGCACTACTTTTGGAGGATCCGTACACACCTGTGAGCATTTTTGAAAATTTTCTCTATGGGTTATCCTGGCTT</gDNA_template>
            <first_frame> L  L  S  S  K  R  A  V  D  M  N  R  H  M  H  E  I  N  L  A  N  Y  A  M  N  R  I  L  K  S  A  F  D  E  V  I  D  P  S  L  G  F  E  T  D  A  E  V  R  R  M  T  I  S  V  A  E  L  A  F  Q  C  L  Q  V  V  K  D  M  R  P  T  M  E  E  V  H  E  T  L  K  L  I  K  Y  S  E  W  K  N  Y  Q  K  K  D  I  N  S  C  N  T  K  T  T  T  V  K  V  H  R  Y  P  S  E  T  D  D  A  V  L  L  K  K  N  T  P  A  S  P  D  T  V  I  D  T  W  A  S  S  S  T  T  T  S  T  G  G  *  C  F  I  N  S  F  S  P  F  I  L  N  T  Y  H  D  V  I  F  I  E  F  F  Q  L  V  S  A  C  S  G  I  *  *  M  K  L  S  *  S  V  S  Y  S  H  I  C  I  *  F  P  F  R  L  C  C  S  D  S  P  K  V  L  L  H  V  C  L  I  L  Q  K  C  T  T  F  G  G  S  V  H  T  C  E  H  F  *  K  F  S  L  W  V  I  L  A  </first_frame>
            <second_frame>  S  Y  H  Q  S  E  L  *  I  *  T  D  I  C  T  R  L  I  W  Q  T  T  R  *  T  G  Y  *  N  L  H  L  M  R  *  L  I  H  H  L  D  S  R  Q  M  L  K  S  G  G  *  Q  Y  Q  *  Q  N  *  L  S  S  A  C  K  L  S  R  T  *  D  L  Q  W  K  K  Y  T  K  R  *  S  L  S  N  T  V  N  G  K  I  I  R  K  R  I  S  I  A  A  I  P  R  Q  Q  L  *  K  F  I  V  I  L  L  K  R  M  M  L  C  Y  *  R  K  T  L  Q  L  H  L  I  L  *  L  I  H  G  L  A  V  P  L  Q  L  V  L  E  G  D  V  S  *  T  H  F  P  P  S  F  *  I  H  I  M  M  S  F  L  *  S  F  F  S  L  F  Q  P  V  Q  E  Y  S  K  *  S  F  L  K  V  L  V  I  V  T  Y  V  Y  D  S  P  L  D  Y  V  A  R  I  P  L  K  C  C  C  T  C  V  *  S  S  K  N  A  L  L  L  E  D  P  Y  T  P  V  S  I  F  E  N  F  L  Y  G  L  S  W  L </second_frame>
            <third_frame>   P  I  I  K  A  S  C  R  Y  E  Q  T  Y  A  R  D  *  F  G  K  L  R  D  E  Q  D  T  K  I  C  I  *  *  G  D  *  S  I  T  W  I  R  D  R  C  *  S  Q  E  D  D  N  I  S  S  R  T  S  F  P  V  L  A  S  C  Q  G  H  E  T  Y  N  G  R  S  T  R  N  V  E  A  Y  Q  I  Q  *  M  E  K  L  S  E  K  G  Y  Q  *  L  Q  Y  Q  D  N  N  C  K  S  S  S  L  S  F  *  N  G  *  C  C  V  I  E  E  K  H  S  S  F  T  *  Y  C  D  *  Y  M  G  *  Q  F  H  Y  N  *  Y  W  R  V  M  F  H  K  L  I  F  P  L  H  F  K  Y  I  S  *  C  H  F  Y  R  V  F  S  A  C  F  S  L  F  R  N  I  V  N  E  A  F  L  K  C  *  L  *  S  H  M  Y  M  I  P  L  *  T  M  L  L  G  F  P  *  S  V  A  A  R  V  S  D  P  P  K  M  H  Y  F  W  R  I  R  T  H  L  *  A  F  L  K  I  F  S  M  G  Y  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0118J18.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106468" stop="106025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSSKRAVDMNRHMHEINLANYAMNRILKSAFDEVIDPSLGFETDAEVRRMTISVAELAFQCLQVVKDMRPTMEEVHETLKLIKYSEWKNYQKKDINSCNTKTTTVKVHRYPSETDDAVLLKKNTPASPDTVIDTWASSSTTTSTGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 144 chains have been computed
$ 
$ memory statistics:
$ 264784 bytes spliced alignments in total
$ 106 spliced alignments have been stored
$ 2497 bytes was the average size of a spliced alignment
$ 29120 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1532 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 163 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:27:14
-->
