<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:26:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8557" stop="7510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8257" g_stop="7810" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8257" e_stop="7810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATATTTTTCTCTCGCTTTATAC-AAAACAGAAACACAATATATACAC-T-TGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACATTTGTGTATAAAGCGAGAGAGGCAAGCGAAAACGAAAAGTAGCGAGTGAGATTTTTGGGGGAGAGACGCCTGGCAAACTTTAGCAAACGTTTGCTATGGAGCACAATTAAATCAAAACCTAACTACTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8558" stop="7663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8258" g_stop="7937" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8258" e_stop="7937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGAATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATATTTTTCTCTCGCTTTATAC-AAAACAGAAACACAATATATACAC-T-TGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACATTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8558" stop="7663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8258" g_stop="7969" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8258" e_stop="7969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGAATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATATTTTTCTCTCGCTTTATAC-AAAACAGAAACACAATATATACAC-T-TGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703053" ref_strand="+" ref_description="SGN-E703053 [FA20BG01]">
      <seq>actacttagattaaggttacgtggtctggggattttgatactataattgattcatcctgattcctaggaccctttctttcttcttttccctaatttaatttactgcaaatctgcactgtgtaagacgtgtttttgttcttggattcattgctgcagagacccttttaagcccaaaggcctttttatggtttgctggtgaaggagtagaagattttaacttaaaagtaataagaaccataataagaaaagctactacagttgctaacactaacgctttgctaaaagcaacagtgctgcagttggagtaagtacttggggctttgatcaatgctgaaatctttgtttctgaggtttgttcctaactcacagaaagtgaaagcaaatggcagaagaaaatggtccttctgattttccagaatctacatctactaggttttattcagatgtacaggcaaacaacaactttcatgggtctggtctacctggtattaagaggagaggccaaggtcatgggagtcgctcttggataaagattgatgagcatggcaattcaaaaattttggaattggataaggctaccgttatgagacattgttctttgccagccagggatctccggcttttggaccctaagtttatctatccctccacaatattaggacgagagcaagctattgtggtaaaccttgaacagatcagatgtgtcatcacagctgatgaggttatactgatgaattctttggatgcttgtgtactgcaatacgagtctgaattgtgtaaacgccttcagataaatagagatcagccggatggtcttcctttcgagttcagagcccttgagcttgttttggagctaacttgcttgtctcttgatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8769" stop="14201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9069" g_stop="9269" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9270" i_stop="11497" i_length="2228">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11498" g_stop="12105" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="809" r_length="608" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12106" i_stop="13831" i_length="1726">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13832" g_stop="13901" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="879" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E703053" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9069" e_stop="9269"/>
          <exon e_start="11498" e_stop="12105"/>
          <exon e_start="13832" e_stop="13901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTTAGATTAAGGTTACGTGGTCTGGGGATTTTGATACTATAATTGATTCATCCTGATTCCTAGGACCCTTTCTTTCTTCTTTTCCCTAATTTAATTTACTGCAAATCTGCACTGTGTAAGACGTGTTTTTGTTCTTGGATTCATTGCTGCAGAGACCCTTTTAAGCCCAAAGGCCTTTTTATGGTTTTCTGGTGAAGGTATGAGCTTTTTCTTAGTGTGGTTTGAGTTCTTGATTTGACTTGATGCGGGGTTCAGTTTTCATACTGTTTAGTTCTCTGTAGTTGGTGAGTTTGTAATTTGTTTTTGGTTTAAATTTGGGGTTATTCTGTTGATTTGGAGTGTCAAGATTCGAACTTTATGCTTTTTTGTTCTGTTCTCAGCTGTTTTAGTGTATTGTTTCTGTTTAGTTGAGCTGGTATATGTATTTTTTTTTTTTTGATAACTGTGGTTGTCCCGTGCTCACCTCGAGCAATTCAATGGGATACCTGTCAACGCCTACCAACAATGGGTATGAGGTGACTTTGTTCATTGAGGCAGGATAGATGAAAATAAATTACCTAGTGTTTTTTGTCTTTGCTGGGATTTGAATGTGAGACCTGATGGTTGTCATCCTCTTCATTGACTACCAGGATACGCCAGTGGGTGCTTAGTTGAGCTGGTATCTATGCGAGTTTGTTTTTGGATGTCCCTTAGGTAGTGTGAGATAGGAAAATAAAATTTTGCTAACTGGTTTTTGAATTTTGACATGGTTATTGTTTTCTTGTGGAATAGTGTTGAGTTTGTTAAGGTTCCTTTTTTTTTTTAAAAAAAAGAAATGTCGGAATTGAGTTTCCATGCTATTTTGATATTTGGTTAGATGAAAACTGAGTGGTAGTAGCGTGACTATCTTACTGTTACCAGATTTCAATGCCATAGGATGTATCGTAGTTTTCTATTCTGAATATTTGGTTACTAGGTGATATGCTGTTAATTTTTTAAGTGTCAAGATTCAAACTTTGTTCATTTTGTTCTCTCCGTGGCTATTTTACCATATTGCTCTCTTTAATTGAGCTGGTATCTGTGAAGGTTTGTTGTAAATGTCCCCTTGGTAGCAAAAAATTTGCTTACTGGTTTGTGAATTTTGACATGGTTATGGATTTCTTATGAATTACTGTTGAGTTTGTAAGGGTTTTTTTTTTTATGTTTGTTTGTTTTCATTATGTTGAAATTGAGTTTCCATGCTTAAAAGACATTTTGATACTTTCTACATATATTTAGTTTAAGACCACAAAAATAAAAAATCTTCTTTACATTCTATAACCCCCTGAACAAACAATTTGAAACGGAGGGAGTACTATCCTGGATTTCAATGCAATAAGGTGAATCTAGTTTTGTCAAATTTGTCTAAATACTAGACATAAGGAAGCGTGGCCAAAAATGACCTGAATATGCTGGCCCTTTAGGACTTTTCAAGCTCTAGCAGATGGGACAAAACTAGTTCTGGAAGAGACGATACACTTTTATTCAATATCAGATAATCCATAGCAGCAATTCACATCTTTGTAAGTTGAACTTACCAAAAATGAGAACTAAAACAAAGAATCTGAAAAATTAGTGATGTATCTTTAAGTTGACTTACGATTTACCAAATATGAGAACTAAAGCAATGAATCCGAAAAATGATTGATGTTGATCTACGGTTCCACGTTTCGTTAACATGCAAACTTGCATTTATTTTACACTTGTGGTACCTTCTTATTCTGGAATTTGGTTTTGGATCAATAACTCACTTAACTGCTTGGATAATTTACACTTAGTGCAAGTTATAACCTCCTATTTGAATATCCTCTATCTCTTCCTTTTTATACTGAGTGTTTAAATCTTTTTTGATGTTGGAAGGAGTTTCCATGCTACTTTTGATCTGGGGTTGCATGAATAGGATTTGCTTTCAGAGTGGATTCATATTATGCTTACAACATACATTCTTATTGTGGAACTGGGATAGCAACATACATAAAATGTTTGGAGCCTATGAAACCATGACATCAGACTCCTCTTGTTAATTCCTAATTCTAAATCTCCTTGCATACAAATGCAAAAGAAGATTGATGTTGAAATAGGGTTTTGCTTGTCCCTGATTTTGGCCTATGCTTAGACGTGAGGAAATTATTTTGATGAGGATTGTAGAAGGATGAAAATCAAGGAGAAAATGTTTCTGATTAAGAGTGGACCAAAAACCACATGTTTGTCACATTTTCTAGTAGCCGTTTGGGAGTGTGTTTCAGGATCAATGTGTTCATAACTTTTCTTCTGAGGCTCTTATGTAACTTAAGCCTTTTGCTGTCTAGATGAAGCTATAGTGAAAATTACATTTACTTATTTTGTTTTTTTGACAAGTTACATCTATTTGATTATGTGGTTCTTCTGTTCACAATTTATTTTGCAGGAGTAGAAGATTTTAACTTAAAAGTAATAAGAACCATAATAAGAAAAGCTACTACAGTTGCTAACACTAACGCTTTGCTAAAAGCAACAGTGCTGCAGTTGGAGTAAGTACTTGGGGCTTTGATCAATGCTGAAATCTTTGTTTCTGAGGTTTGTTCCTAACTCACAGAAAGTGAAAGCAAATGGCAGAAGAAAATGGTCCTTCTGATTTTCCAGAATCTACATCTACTAGGTTTTATTCAGATGTACAGGCAAACAACAACTTTCATGGGTCTGGTCTACCTGGTATTAAGAGGAGAGGCCAAGGTCATGGGAGTCGCTCTTGGATAAAGATTGATGAGCATGGCAATTCAAAAATTTTGGAATTGGATAAGGCTACCGTTATGAGACATTGTTCTTTGCCAGCCAGGGATCTCCGGCTTTTGGACCCTAAGTTTATCTATCCCTCCACAATATTAGGACGAGAGCAAGCTATTGTGGTAAACCTTGAACAGATCAGATGTGTCATCACAGCTGATGAGGTTATACTGATGAATTCTTTGGATGCTTGTGTACTGCAATACGAGTCTGAATTGTGTAAACGCCTTCAGATAAATAGAGATCAGCCGGGTAAATCCATTTCTATTTATTTTTCTGCATAAAGCTTGGTTTTTTCTCAAAAGCAATGAAAACCAGTGAAAGCTAGTTTCTGTCTAAGAGTTGAAAGCCAGTAGATGCTCCTGTTCTATGCAATCTAGCTTATTGTTAGGTTATCTCTTTTTTGTTTAAATTGTCTTGCACCAATGGATCGTAATGTTGACTAAAAATTAACTATTCCGCCCTCCATGCCAGTTTAACTGTTAACTGTGACTTCTTTAGTCCAGCTAGACCAAGTTCAATAGTGAGATAACCATTAATGTATTGAAAGTAGAACTTAAAAGTTTCAGATGCTATCTGGAAAATATGATGCACTTATGGTTCTGCATTCCAGGGTTAAAAGGAGAAGTGAAAGACGACTTCTCATAGAAAACCTGTCACACTCTTGGAAAGGCAAAAGAGACAAACAAATCGCACAGAGGCTATATTTTCCAGAGTTGGATTGGCACAATTTTATTAGCAAAGTGCTTAATGCAGAAAGCCTATTTTTTCAAGGCATCTGTATTGGAATTGTTTGAGATTGAGGCATGATTGTTGAATGTTGTTCTGTCTATGTCTGAATCAGATCCATGTAATTCTAAATCATAACACAAGAAAATGCAGCATGAATTGCTGAAATTGATTGGATCCACCTCTTCGTCCCCCTCAACGGAAACAGTTGAGTAGGTCAAAGCTTGTGGCATTCTATGTGGGGAGCAAACTCTGTGATGTTGGTTTTCTTATTTTAATATTTGTATCTGGTTTTATCTATGAATGGCATTATGGTTGTATAAGCATAACAAAACTTCTGAACTTATCTATACAGAAAGAGAGATCAAGAAGTCTTGGAAATAGTTCTTGGTTCCTCTTTTGCATGGCAATTAGCATCTAAATCCATTCCTGAGTCTGCATAAGAACAATTATTAAAGTAAAAAATGGAAAACTTGGATGATGCTAGAAGTTGGGGATATTTCTCACTATTGGTAATGGCTTAATTCTGGAAACTTTTATGTTGTGTAGCCATGATATTTTCTTAACAGTGAATTTGGATATATAAAGACCTCAATTGAAAGGAGATATTGGAAAAGAAATTGATAAAGATTCAAGGTATTGAGTTCCAAGCTTGTTATAACAGTTATGTTATCCAGCTGTTTTTTTCCATGTAGCATGCACTTAATGTTGCTTCTGCCAAATGCTACTTTGACCTACTAAATTGCAGAACGAAATATAAAAATTAGCCTTAAATTTTGTTCCACCTTGCCTGAGCTTTGTAAGAACAGCCTGTCTTACGTCTTTGACTTTAATTTAATCAAACTTCTGTACTTAGCATCTGCAGTTCTTTATGTATCCATAAAAGTAGTATCTATAGCTATTAGAAGCAATGGATGATATCCCCTCTAGTATAAATGAACTGACACTTGAGCATGTTCAGCAACCGATGGTGTTTTTGTTGTTTGAGGGATGCATGTAATTACAGTGATTCTGAAACGTTCTCTGTTCTTTGCATTCATTTAGCATGATGTCATATGTCTTTCAATGCAACAGCTAGTACACCATCCCAAACTTGTTGGCGTCTGTTCGATGAATCCTCTATGTCCCCTCCCCTCCCCTCTGTTTGAACCTATTTTACCCTGGTGTGATGTTTCTTTTGATAAACGGTGAACTCTCTATAGAAGAAATTTCAGTTTTTTTTCATAATGAGTGGTGTTTTTTTATTCAGATGGTCTTCCTTTCGAGTTCAGAGCCCTTGAGCTTGTTTTGGAGCTAACTTGCTTGTCTCTTGATGCTCA</genome_strand>
        <mrna_strand>ACTACTTAGATTAAGGTTACGTGGTCTGGGGATTTTGATACTATAATTGATTCATCCTGATTCCTAGGACCCTTTCTTTCTTCTTTTCCCTAATTTAATTTACTGCAAATCTGCACTGTGTAAGACGTGTTTTTGTTCTTGGATTCATTGCTGCAGAGACCCTTTTAAGCCCAAAGGCCTTTTTATGGTTTGCTGGTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGAAGATTTTAACTTAAAAGTAATAAGAACCATAATAAGAAAAGCTACTACAGTTGCTAACACTAACGCTTTGCTAAAAGCAACAGTGCTGCAGTTGGAGTAAGTACTTGGGGCTTTGATCAATGCTGAAATCTTTGTTTCTGAGGTTTGTTCCTAACTCACAGAAAGTGAAAGCAAATGGCAGAAGAAAATGGTCCTTCTGATTTTCCAGAATCTACATCTACTAGGTTTTATTCAGATGTACAGGCAAACAACAACTTTCATGGGTCTGGTCTACCTGGTATTAAGAGGAGAGGCCAAGGTCATGGGAGTCGCTCTTGGATAAAGATTGATGAGCATGGCAATTCAAAAATTTTGGAATTGGATAAGGCTACCGTTATGAGACATTGTTCTTTGCCAGCCAGGGATCTCCGGCTTTTGGACCCTAAGTTTATCTATCCCTCCACAATATTAGGACGAGAGCAAGCTATTGTGGTAAACCTTGAACAGATCAGATGTGTCATCACAGCTGATGAGGTTATACTGATGAATTCTTTGGATGCTTGTGTACTGCAATACGAGTCTGAATTGTGTAAACGCCTTCAGATAAATAGAGATCAGCCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCTTCCTTTCGAGTTCAGAGCCCTTGAGCTTGTTTTGGAGCTAACTTGCTTGTCTCTTGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365359" ref_strand="+" ref_description="SGN-E365359 [cLPT-2-D8]">
      <seq>tttcttcttttccctaaatctttatactcattcagttaatattatacttttaatttactgcaaatctgcactgtgtaagacgtgtttttgttcttggattcattgttgcagagacccttttaagcccaaaggcgttttatggttttctggtgaaggagcagaagatatgaaaataaaagtaataagaaccataataagaaaagctactactttgctaacactaacgctttgctaaaagcaacagtgctgcagttggagtaagtacttggggctttgatcaatgctgaaatctttgtttctgaggtttgttgctaactcacagaaagtgaaagcaaatggcagaagaaaatggtccttctgattttccagaatctacatctactaggttttattcagatgtacaggcaaacaactttcatgggtctggtctacctggtattaagaggagaggccaaggtcatgggagtcgctcttggataaagattgatgagcatggtaattcaaaaattttggaattggataatgctaccgttatgagacattgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="8845" stop="12196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9162" g_stop="9269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="155" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9270" i_stop="11497" i_length="2228">
            <donor d_prob="0.545" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11498" g_stop="11896" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="550" r_length="395" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E365359" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9162" e_stop="9269"/>
          <exon e_start="11498" e_stop="11896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTACTGCAAATCTGCACTGTGTAAGACGTGTTTTTGTTCTTGGATTCATTGCTGCAGAGACCCTTTTAAGCCCAAAGGCCTTTTTATGGTTTTCTGGTGAAGGTATGAGCTTTTTCTTAGTGTGGTTTGAGTTCTTGATTTGACTTGATGCGGGGTTCAGTTTTCATACTGTTTAGTTCTCTGTAGTTGGTGAGTTTGTAATTTGTTTTTGGTTTAAATTTGGGGTTATTCTGTTGATTTGGAGTGTCAAGATTCGAACTTTATGCTTTTTTGTTCTGTTCTCAGCTGTTTTAGTGTATTGTTTCTGTTTAGTTGAGCTGGTATATGTATTTTTTTTTTTTTGATAACTGTGGTTGTCCCGTGCTCACCTCGAGCAATTCAATGGGATACCTGTCAACGCCTACCAACAATGGGTATGAGGTGACTTTGTTCATTGAGGCAGGATAGATGAAAATAAATTACCTAGTGTTTTTTGTCTTTGCTGGGATTTGAATGTGAGACCTGATGGTTGTCATCCTCTTCATTGACTACCAGGATACGCCAGTGGGTGCTTAGTTGAGCTGGTATCTATGCGAGTTTGTTTTTGGATGTCCCTTAGGTAGTGTGAGATAGGAAAATAAAATTTTGCTAACTGGTTTTTGAATTTTGACATGGTTATTGTTTTCTTGTGGAATAGTGTTGAGTTTGTTAAGGTTCCTTTTTTTTTTTAAAAAAAAGAAATGTCGGAATTGAGTTTCCATGCTATTTTGATATTTGGTTAGATGAAAACTGAGTGGTAGTAGCGTGACTATCTTACTGTTACCAGATTTCAATGCCATAGGATGTATCGTAGTTTTCTATTCTGAATATTTGGTTACTAGGTGATATGCTGTTAATTTTTTAAGTGTCAAGATTCAAACTTTGTTCATTTTGTTCTCTCCGTGGCTATTTTACCATATTGCTCTCTTTAATTGAGCTGGTATCTGTGAAGGTTTGTTGTAAATGTCCCCTTGGTAGCAAAAAATTTGCTTACTGGTTTGTGAATTTTGACATGGTTATGGATTTCTTATGAATTACTGTTGAGTTTGTAAGGGTTTTTTTTTTTATGTTTGTTTGTTTTCATTATGTTGAAATTGAGTTTCCATGCTTAAAAGACATTTTGATACTTTCTACATATATTTAGTTTAAGACCACAAAAATAAAAAATCTTCTTTACATTCTATAACCCCCTGAACAAACAATTTGAAACGGAGGGAGTACTATCCTGGATTTCAATGCAATAAGGTGAATCTAGTTTTGTCAAATTTGTCTAAATACTAGACATAAGGAAGCGTGGCCAAAAATGACCTGAATATGCTGGCCCTTTAGGACTTTTCAAGCTCTAGCAGATGGGACAAAACTAGTTCTGGAAGAGACGATACACTTTTATTCAATATCAGATAATCCATAGCAGCAATTCACATCTTTGTAAGTTGAACTTACCAAAAATGAGAACTAAAACAAAGAATCTGAAAAATTAGTGATGTATCTTTAAGTTGACTTACGATTTACCAAATATGAGAACTAAAGCAATGAATCCGAAAAATGATTGATGTTGATCTACGGTTCCACGTTTCGTTAACATGCAAACTTGCATTTATTTTACACTTGTGGTACCTTCTTATTCTGGAATTTGGTTTTGGATCAATAACTCACTTAACTGCTTGGATAATTTACACTTAGTGCAAGTTATAACCTCCTATTTGAATATCCTCTATCTCTTCCTTTTTATACTGAGTGTTTAAATCTTTTTTGATGTTGGAAGGAGTTTCCATGCTACTTTTGATCTGGGGTTGCATGAATAGGATTTGCTTTCAGAGTGGATTCATATTATGCTTACAACATACATTCTTATTGTGGAACTGGGATAGCAACATACATAAAATGTTTGGAGCCTATGAAACCATGACATCAGACTCCTCTTGTTAATTCCTAATTCTAAATCTCCTTGCATACAAATGCAAAAGAAGATTGATGTTGAAATAGGGTTTTGCTTGTCCCTGATTTTGGCCTATGCTTAGACGTGAGGAAATTATTTTGATGAGGATTGTAGAAGGATGAAAATCAAGGAGAAAATGTTTCTGATTAAGAGTGGACCAAAAACCACATGTTTGTCACATTTTCTAGTAGCCGTTTGGGAGTGTGTTTCAGGATCAATGTGTTCATAACTTTTCTTCTGAGGCTCTTATGTAACTTAAGCCTTTTGCTGTCTAGATGAAGCTATAGTGAAAATTACATTTACTTATTTTGTTTTTTTGACAAGTTACATCTATTTGATTATGTGGTTCTTCTGTTCACAATTTATTTTGCAGGAGTAGAAGATTTTAACTTAAAAGTAATAAGAACCATAATAAGAAAAGCTACTACAGTTGCTAACACTAACGCTTTGCTAAAAGCAACAGTGCTGCAGTTGGAGTAAGTACTTGGGGCTTTGATCAATGCTGAAATCTTTGTTTCTGAGGTTTGTTCCTAACTCACAGAAAGTGAAAGCAAATGGCAGAAGAAAATGGTCCTTCTGATTTTCCAGAATCTACATCTACTAGGTTTTATTCAGATGTACAGGCAAACAACAACTTTCATGGGTCTGGTCTACCTGGTATTAAGAGGAGAGGCCAAGGTCATGGGAGTCGCTCTTGGATAAAGATTGATGAGCATGGCAATTCAAAAATTTTGGAATTGGATAAGGCTACCGTTATGAGACATTGTTCTTT</genome_strand>
        <mrna_strand>TTTAATTTACTGCAAATCTGCACTGTGTAAGACGTGTTTTTGTTCTTGGATTCATTGTTGCAGAGACCCTTTTAAGCCCAAAGG-CGTTTTATGGTTTTCTGGTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAAGATATGAAAATAAAAGTAATAAGAACCATAATAAGAAAAGCTACTAC-TTTGCTAACACTAACGCTTTGCTAAAAGCAACAGTGCTGCAGTTGGAGTAAGTACTTGGGGCTTTGATCAATGCTGAAATCTTTGTTTCTGAGGTTTGTTGCTAACTCACAGAAAGTGAAAGCAAATGGCAGAAGAAAATGGTCCTTCTGATTTTCCAGAATCTACATCTACTAGGTTTTATTCAGATGTACAGGC--A-AACAACTTTCATGGGTCTGGTCTACCTGGTATTAAGAGGAGAGGCCAAGGTCATGGGAGTCGCTCTTGGATAAAGATTGATGAGCATGGTAATTCAAAAATTTTGGAATTGGATAATGCTACCGTTATGAGACATTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734216" ref_strand="+" ref_description="SGN-E734216 [LB12AD03]">
      <seq>gtatctctgattcataaaaatttaaaatttttgcagctaaatccagaagatgaaataaatgtggttcatggagacttgaaactagattgcctcaatgtgcagagccctgattcatcaggatcagatagtggaacttggattgatcattctaaacctgccaaccatcctgtttccccgagggagctaagctcgcgtctgcatgaggtgatagaatccaggctagaagctcgaattaaggagctcgaagcagccctttatcatagccaaaatagagcttgttcattggaaacacaacagaatctctctcaaaaggcctttgcattgcgcgaatcagagtcctcctcatgttggtatcatgaggctgatgaagagaccaccagtatcaggcatggaagtgaaaatgcttttgacactaatacaacaacccctccttttgatggaggattgattgatagcccaaacgaagaacagggtggcctggtgcacgaacgtaagcagcctaccttgatacaattattaaagacagaatccatggctctaacccgtgagctacatgtctcacgaaaacaacattaccattgctccaaagttcccattcattgatagaccagatatgatgggaaaatgatcatatctatattatgttgtcttctgttattttttatgttacattggtatcttcttacaactcttttgagtatagagacagaatgtgcagtgtacatgtaaagattgaagaattttttatagatcaatagacattagggatagggtgttattctgtatacttgagatgatgtatcatttgtgccatggggttcaagtttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18193" stop="16767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17893" g_stop="17067" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="831" polyA_stop="848"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E734216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17893" e_stop="17067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTCTGATTCATAAAAATTTAAAATTTTTGCAGCTAAATCCAGAAGATGAAATAAATGTGGTTCATGGAGACTTGAAACTAGATTGCCTCAATGTGCAGAGCCCTGATTCATCAGGATCAGATAGTGGAACTTGGATTGATCATTCTAAACCTGCCAACCATCCTGTTTCCCCGAGGGAGCTAAGCTCGCGTCTGCATGAGGTGATAGAATCCAGGCTAGAAGCTCGAATTAAGGAGCTCGAAGCAGCCCTTTATCATAGCCAAAATAGAGCTTGTTCATTGGAAACACAACAGAATCTCTCTCAAAAGGCCTGTGCATTGCGCGAATCAGAG---TCCTCATGTTGGTATCATGAGGCTGATGAAGAGACCACCAGTATCAGGCATGGAAGTGAAAATGCTTTTGACACTAATACAACAACCCCTCCTTTTGATGGAGGATTGATTGATAGCCCAAACGAAGAACAGGGTGGCCTGGTGCACGAACGTAAGCAGCCTACCTTGATACAATTATTAAAGACAGAATCCATGGCTCTAACCCGTGAGCTACATGTCTCACGGAAACAACATTACCATTGCTCCAAAGTTCCCATTCATTGATAGACCAGATATGATGGGAAAATGATCATATCTATATTATGTTGTCTTCTGTTATTTTTTATGTTACATTGGTATCTTCTTACAACTCTTTTGAGTATAGAGACAGAATGTGCAGTGTACATGTAAAGATTGAAGAATTTTTTATAGATCAATAGACATTAGGGATAGGGTGTTATTCTGTATACTTGAGATGATGTATCATTTGTGCCATGGGGTTCAAGTTTCAA</genome_strand>
        <mrna_strand>GTATCTCTGATTCATAAAAATTTAAAATTTTTGCAGCTAAATCCAGAAGATGAAATAAATGTGGTTCATGGAGACTTGAAACTAGATTGCCTCAATGTGCAGAGCCCTGATTCATCAGGATCAGATAGTGGAACTTGGATTGATCATTCTAAACCTGCCAACCATCCTGTTTCCCCGAGGGAGCTAAGCTCGCGTCTGCATGAGGTGATAGAATCCAGGCTAGAAGCTCGAATTAAGGAGCTCGAAGCAGCCCTTTATCATAGCCAAAATAGAGCTTGTTCATTGGAAACACAACAGAATCTCTCTCAAAAGGCCTTTGCATTGCGCGAATCAGAGTCCTCCTCATGTTGGTATCATGAGGCTGATGAAGAGACCACCAGTATCAGGCATGGAAGTGAAAATGCTTTTGACACTAATACAACAACCCCTCCTTTTGATGGAGGATTGATTGATAGCCCAAACGAAGAACAGGGTGGCCTGGTGCACGAACGTAAGCAGCCTACCTTGATACAATTATTAAAGACAGAATCCATGGCTCTAACCCGTGAGCTACATGTCTCACGAAAACAACATTACCATTGCTCCAAAGTTCCCATTCATTGATAGACCAGATATGATGGGAAAATGATCATATCTATATTATGTTGTCTTCTGTTATTTTTTATGTTACATTGGTATCTTCTTACAACTCTTTTGAGTATAGAGACAGAATGTGCAGTGTACATGTAAAGATTGAAGAATTTTTTATAGATCAATAGACATTAGGGATAGGGTGTTATTCTGTATACTTGAGATGATGTATCATTTGTGCCATGGGGTTCAAGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315124" ref_strand="+" ref_description="SGN-E315124 [cTOA-24-A14]">
      <seq>tctatccgtcgggtttagaggcctccccattttaaaaagacggaattttaatttaagtttatatattttagttgttgaaatgggccgataaaaatatatccgtcgggtttagaggcctccccaatttaaaaagatggaattttaatttaagtttatatattttagttgttgaaattggccgatgaagaaattaccgtcgatttccaaggtctcccatgttaataagacggatttctattttagttattatttgagttatttatttttatttatattattttgacactaactcttttactaagtgtctttacaggtacctggaggtgcatttccttgaaattattcgaaaatgttcgaattatatttcatttgttattttgtgaatattgacgttaggcaaactttaggccgataattattgttttattgtgtgtattgtgtgtttatgatatgtgtttattttatattcttactcaatttgaaaaaaaatgaattcagttgggaaccacatttgtggattccgaaggatgcctaaccccttcccttcggaataactttaaccccttacctagaatcaatttggtttcgtagattaataattggtttcctagttttcctaaaattatgtggcgactctttttaaaactcgtttattttttgaactttgttnaaatttgatcaattaattattttcgagtcaccgcgacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="38891" stop="37640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38577" g_stop="37921" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="711" r_length="654" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E315124" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38577" e_stop="37921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATATGTTATATGTTGAAAAGGGCCGATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAAGACGGAATTTTAATTCAAGTTTATATATTTTAGTTGTTGAAA-TGGCCGATGAAGAAATTACTGTCGATTTCCAAGGCCTCCCATGTTAATAAGACGGATTTTTATTTTAGTTATTATGTGAGTTATTTATTTTTATTTTTATTATTTTGACACTAACTCTTTTACTAAGTGTCTTTACAAGTACCCGGAGGTGCTTCTCCTTGAAATTATTCAAAAAAGTTCGAATTATAATTTCATTCGTTATTTTGTGAATATTGACGTTAAGCAAACATTAGGCCGATAATTTTTTTTTTGTTGTGTATATTGTTTGTTTATTATATGTGTTTATTTTATATTTTTCCTCAATTTGAAAAAAAATTAATTCAGTCGGGAACCACATTTGTTGATTTCGAAGGGTGCCTAACCCTTTCCCTTCAGAATAACCTGAACCCCTTACCTAGAATCAAATTGGTTTCGTAGATAAATAATTGGTTTCCTAGTTTTCCTAAAATTAGGTGACGACTCTTTTTTAAAACTCGTTTA-TTTTTAAACTTTGTTAAAAATTGAATCAATTAATTATTTTTTGAGTTGTCGTGACGTTT</genome_strand>
        <mrna_strand>TTTATATATTTTAGTTGTTGAAATGGGCCGAT-AAAAATATATCCGTCGGGTTTAGAGGCCTCCCCAATTTAAAAAGATGGAATTTTAATTTAAGTTTATATATTTTAGTTGTTGAAATTGGCCGATGAAGAAATTACCGTCGATTTCCAAGGTCTCCCATGTTAATAAGACGGATTTCTATTTTAGTTATTATTTGAGTTATTTATTTTTATTTATATTATTTTGACACTAACTCTTTTACTAAGTGTCTTTACAGGTACCTGGAGGTGCATTTCCTTGAAATTATTCGAAAATGTTCGAATTAT-ATTTCATTTGTTATTTTGTGAATATTGACGTTAGGCAAACTTTAGGCCGATAATTATTGTTTTATTGTGTGTATTGTGTGTTTATGATATGTGTTTATTTTATATTCTTACTCAATTTGAAAAAAAATGAATTCAGTTGGGAACCACATTTGTGGATTCCGAAGGATGCCTAACCCCTTCCCTTCGGAATAACTTTAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATTAATAATTGGTTTCCTAGTTTTCCTAAAATTATGTGGCGACTC-TTTTTAAAACTCGTTTATTTTTTGAACTTTGTTNAAATTTG-ATCAATTAATTA-TTTTCGAGTCACCGCGACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="46497" stop="47493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46791" g_stop="47194" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46791" e_stop="47194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCATGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGAGATCGGGTGTCACGAACTGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="46985" stop="47822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47285" g_stop="47522" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47285" e_stop="47522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATAATGAGGGAGCGGAGTGTCACGTACCAACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCTCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTATTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="46986" stop="48066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47286" g_stop="47766" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47286" e_stop="47766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATAATGAGGGAGCGGAGTGTCACGTACCAACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCTCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTATTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATATTGATTCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGATTCAACAGTAACTCAAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320217" ref_strand="+" ref_description="SGN-E320217 [cTOB-21-C24]">
      <seq>tcttggagaacgcgtatttgttcatggttgagatggaaaagttaggtatatcacctgatgtttttacttatacgatacttatatctgccttctataaagttaaccgatggcacattgctgatggattgtggaacctcatggtccgtaaaggttgtatgcctaatgttgctacctttaatgttaaaattcaattcatggtaaatatgacgtttgcttgggaagctaataaattgttgcagttgatgaaacgtattgggattactccacatgaggttacatacaatttagtgatcaaaggctttttcctactagagaatcttcctatggctaaaagaatctactctgctttccatggtgcgggcttcaagccaaattctacaatctatcaaaccatgattcattacctgtgtatagcatgtgattttgatttgtcatattctatgtgtaaagaaagcatggaaaataattggttcccaagttcggatataattaaaaatatccttgaagggctgtgcaaggatggaacagacgaaaagatgcgaaacgctcgatttttattcatcctggctaagaaaaagatactctctttctcaacagaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="56145" stop="54942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55845" g_stop="55242" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E320217" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55845" e_stop="55242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGAGAAGGCGTATTTGTTCATGGTTGAGATGGAAAAGTTAGGTATATCACCTGATGTTTTTACTTATACGATACTTATATCTGCCTTCTATAAAGTTAACCGATGGCAGATTGCTGATGGATTGTGGAACCTCATGGTCCGTAAAGGTTGTATGCCTAATGTTGCTACCTTTAATGTTAGAATTCAATTCATGGTAAATATGAGGTTTGCTTGGGAAGCTAATAAATTGTTGCAGTTGATGAAACGTATTGGGATTACTCCAGATGAGGTTACATACAATTTAGTGATCAAAGGCTTTTTCCTAGTAGAGAATCTTCCTATGGCTAAAAGAATCTACTCTGCTTTCCATGGTGCGGGCTTCAAGCCAAATTCTAGAATCTATCAAACCATGATTCATTACCTGTGTAGAGCAGGTGATTTTGATTTGTCATATTCGATGTGTAAAGAAAGCATGGAAAATAATTGGTTCCCAAGTTCGGATATAATTAAAAATATCCTTGAAGGGCTGTGCAAGGATGGAACAGAGGAAAAGATGCGAAACGCTCGATTTTTAGTCATCCTGGCTAAGAAAAAGATACCCCCTTTCTCAACAGAAACTTT</genome_strand>
        <mrna_strand>TCTTGGAGAACGCGTATTTGTTCATGGTTGAGATGGAAAAGTTAGGTATATCACCTGATGTTTTTACTTATACGATACTTATATCTGCCTTCTATAAAGTTAACCGATGGCACATTGCTGATGGATTGTGGAACCTCATGGTCCGTAAAGGTTGTATGCCTAATGTTGCTACCTTTAATGTTAAAATTCAATTCATGGTAAATATGACGTTTGCTTGGGAAGCTAATAAATTGTTGCAGTTGATGAAACGTATTGGGATTACTCCACATGAGGTTACATACAATTTAGTGATCAAAGGCTTTTTCCTACTAGAGAATCTTCCTATGGCTAAAAGAATCTACTCTGCTTTCCATGGTGCGGGCTTCAAGCCAAATTCTACAATCTATCAAACCATGATTCATTACCTGTGTATAGCATGTGATTTTGATTTGTCATATTCTATGTGTAAAGAAAGCATGGAAAATAATTGGTTCCCAAGTTCGGATATAATTAAAAATATCCTTGAAGGGCTGTGCAAGGATGGAACAGACGAAAAGATGCGAAACGCTCGATTTTTATTCATCCTGGCTAAGAAAAAGATACTCTCTTTCTCAACAGAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745521" ref_strand="+" ref_description="SGN-E745521 [GI|47105933]">
      <seq>ggacccatttcagtttcagccataaggtggatgcaatgaaaacattcgttatgttgttgcccattttatgggttctagttgctcttcaaggggtaacatctcatgaagatcatcctctagcaaggattgctgttcataatgctattgctgctttggatgctcgtgcgtatatcaaagcatctccttctgtccttgggtcaaacggcctaaaccaagaatggataactctggagtatggcacaggcaacccgtcaaatgatgattgggttggagtgttttctcctgccaatttcagtgcagctacgtgtgaccctgaaaataacatggtgactccaccacttttgtgtacagctcctataaagtaccaatttgcaaatcgctccaatcccaactacaaaaggacaggaaaaggatcgctaaagcttcaattgatcaaccagagatcagacttctccttcgctttgttttctggtggattacggaatccaaagctggttgcagtgtcaaatactgttgcctttacaaatccaaatgcaccattatacccgcggttagcacagggaaagacatggaatgaaatgactgttacatggacaagtggatatgatatcaatgaagcagagccctttgtggagtggggcccacaacgtggacaacagactcgttcaccggcagggactttgactatcgaccgtagtagcttgtgtggtgcaccagcaagaactgttggatggcgcgatcctggattcattcacactagttttctgaaggagttgtggcccaatttagtatatacctacaagctggggcataaactgtttaatggcacgtatatctggagtcagatgtacaaatttaaagcatcgccctatcctggccaaagctctcttcagcgagtggttatttttggtgacatgggaaaggtttggacactcttaaaatctgtttttgttttagaatagagagctaagtgtttatatctgtgcatagatatttgtactttaccgtcttgaaactctggaagttgctctctattgagtttcatgttcttccattcagaagttacacttgacagcgacctattattgcctttttaacgacaggaagaagctgatggctcaattgtgtacaatcaataccaacctggctcccttaacactaccaagcaaatcattgaggacttaaagaacattgacatagtctttcacattggtgatattgtttacgccaatggatatctttctcagtgggatcaatttacttctcaagtagagccaattacttcaagagtaccatacatgattgctagcggcaaccatgaacgcgattggcctgatagtgggtcattttatggtaaaaaggattcaggtggagagtgtggtgtcttggctcagacaatgttctattttcctgccgaaaatagggataagttctggtactctactgattatggcatgttcagattctgtattgctgatactgaacatgattggagagagggcaccgaacaatataagttccttgaacactgcttcgcatctgtagatagacagaaacagccatggctaatcttccttgcacatagggtacttggttactcttctggagatttttacgctgatgaaggatcatttggagaaccaatggggagggacagccttcaaaagctttggcagaagtataaagttgatatcgccatatatggtcatgtccacaattacgaaagaacatgtcccatttaccagaatatttgtacaatgaccgagaagaactcgtacaagggacccttgaacgggacaatacatgtcgttgcgggaggaggtggagctggtctagtaaagtttacatccctccagactaagtggagtatattcaaagattacgattatggatttgtgaagatgacagcattcgatcattcaaacctcttgttcgagtacaagaagagcagcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcccttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgttcacaacaagtgtctccataaaacagcaatatataatttgcagttgaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="62414" stop="57177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62107" g_stop="61924" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="203" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61923" i_stop="61760" i_length="164">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61759" g_stop="61668" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="295" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61667" i_stop="61518" i_length="150">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61517" g_stop="61451" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="362" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61366" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61365" g_stop="61243" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="485" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61242" i_stop="60816" i_length="427">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60815" g_stop="60723" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="578" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60722" i_stop="60567" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60566" g_stop="60437" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="708" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60436" i_stop="60172" i_length="265">
            <donor d_prob="0.156" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60171" g_stop="60090" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="790" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60089" i_stop="59854" i_length="236">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="59853" g_stop="59335" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="1309" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="59334" i_stop="59246" i_length="89">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="59245" g_stop="59120" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1435" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="59119" i_stop="58798" i_length="322">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="58797" g_stop="58488" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1436" r_stop="1745" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="58487" i_stop="58091" i_length="397">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="58090" g_stop="57465" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1746" r_stop="2371" r_length="626" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E745521" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2352</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62107" e_stop="61924"/>
          <exon e_start="61759" e_stop="61668"/>
          <exon e_start="61517" e_stop="61451"/>
          <exon e_start="61365" e_stop="61243"/>
          <exon e_start="60815" e_stop="60723"/>
          <exon e_start="60566" e_stop="60437"/>
          <exon e_start="60171" e_stop="60090"/>
          <exon e_start="59853" e_stop="59335"/>
          <exon e_start="59245" e_stop="59120"/>
          <exon e_start="58797" e_stop="58488"/>
          <exon e_start="58090" e_stop="57465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAGGTGGATGCAATGAAAACATTCGTTATGTTGTTGCCCATTTTATGGGTTCTAGTTGCTCTTCAAGGGGTAACATCTCATGAAGATCATCCTCTAGCAAGGATTGCTGTTCATAATGCTATTGCTGCTTTGGATGCTCGTGCGTATATCAAAGCATCTCCTTCTGTCCTTGGGTCAAACGTAAGTTTCATTATCTTGGAGCTTTACCCCAATACTTAGTTAAGCTAGTTATGCTTCTGCTACCTTGTGTTAACTTTCCTGATTAACGGATGTGATAGCCAATCTTTTGAACTGATACTTAAGGATTTCAGGTTCTAATTTCTTACATTCTTGCTATGTTCTAGGGCCTAAACCAAGAATGGATAACTCTGGAGTATGGCACAGGCAACCCGTCAAATGATGATTGGGTTGGAGTGTTTTCTCCTGCCAATTTCAGGTGAACTGCACTTGGTTATAAAACTGTCAATATCTTAACTATTTGAAAGTTTAACATGTGAGAAATGATTTTGTTTTGCTAATTTTAGTTGCATAAATTTTCATTACTTCTAATTATGCTAATATGTTGGACGTTTACAAAATATTTCAGTGCAGCTACGTGTGACCCTGAAAATAACATGGTGACTCCACCACTTTTGTGTACAGCTCCTATAAAGGTCCGTCCCATTTATTGATTTATAGTGCAACCTTTTAGAAGCTCTTTCTCTGGAGATTGACTCGTGTCGCTTTCTTCTTTTGCAGTACCAATTTGCAAATCGCTCCAATCCCAACTACAAAAGGACAGGAAAAGGATCGCTAAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCCTTCGCTTTGTTTTCTGGTGGATTACGGAATGTATGTTAACACTTACCCTTGTCCAGTTTACCTCTATAGAGTTTGCATATTTTACATGAAGCAAAAGTTAGAGACCAAATTCTGAAATCCGGTGGTGCAAATCTCTTTCTTAAAGTATTTCTCAAAAAAATCACTTTTTTCAAGAAGATATTTGACTTGTTTTGAATTCGTTAAAAATCTTTGATTTCTTTTCTACTGATTAGTTATATTTTTTTGATTTGTCTTCCTTCTAATCCCACTCTACAAAGACACTTTCTACAGTCTGATGTTCCCCTTATAACATGAATTTGTTTTATCATGCCACATGAATAAGCTCTTGTAGGTGATGGGTCAAATTCATACATACATGAGTCTGATTAAAGGCTAAAGTTTCTTATCCAGGATCTATATCATCTTATTCTAATGCATTTCTTTTCCTGTTTAACAGCCAAAGCTGGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAAGTAAGTTTCTTTCTTCCACTGTTTCTTAATATGCAAAACAAGGTTGAAATTATGTTTCAGGCAGAATAATCAATGTGTTCTGCATCATCACTAATAGTTTGAATAATGACCACTTTGGAAGATCAGAAAAAATGACTGTTTAAACTTGATGCTCAGATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTGGTGGGTATTTTTTCCCTTCACATTGTGTCCTAAAACTAGCATCTGTTTTCCGTAAATGTAGTATTTGATGTATATCATCTGTTCTCCAATAATGTAACATATGATTGCACATGTTGGATACTTGATTAAATACAATGAGTGTATGATAAACAACTCTGCGTGGAATGCGCCTACTTCACTTTGACAAACACTGGATGAATCTCTTTTTATTCTGCATTAACTTAATAAAAGTTTCTTTTAGAAAGAATGGCATTCTGTTCTGCAGGTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGTGTAAGTTTACACTCTTCCTAGCAGTAGAAGGACAATAATCAAATCTTGAATGACATGTTTTATTGGGCATCCATTTCTGAAAATGTCAGATAACTTTGAGATTCTTCTTCTTTTCACTATAGTTGCATAGGAAAATACATCTACTGAAACCCTGTCTTTTGGATAAGACAGTTGTACATCATGCTAATGCAGGTTGACATTGAAATGTAAATTCAATGCACTTTCTGATTATGCAGATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGTTTGGACACTCTTAAAATCTGTTTTTGTTTTAGAATAGAGAGCTAAGTGTTTATATCTGTGCATAGATATTTGTACTTTACCGTCTTGAAACTCTGGAAGTTGCTCTCTATTGAGTTTCATGTTCTTCCATTCAGAAGTTACACTTGACAGCGACCTATTATTGCCTTTTTAACGACAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTACGCCAATGGATATCTTTCTCAGTGGGATCAATTTACTTCTCAAGTAGAGCCAATTACTTCAAGAGTACCATACATGATTGCTAGGTAAATTGCAGGTCTTTTATAATTCTTTTCTGAGTACACACTTGTCTGTTTTCTTTTTTCATGTAACTAATAATTTTTTCCCCTCCCAGCGGCAACCATGAACGCGATTGGCCTGATAGTGGGTCATTTTATGGTAAAAAGGATTCAGGTGGAGAGTGTGGTGTCTTGGCTCAGACAATGTTCTATTTTCCTGCCGAAAATAGGGATAAGTTCTGGTATGGTGACCGTATCTTTTGGATAATCCTATGTAGTGTTCCCTTTCAAATCCCACTTGTTGTATTACTTATCTACTATATACATATTTTTTTCTTCCTGAAAATTATGTATATGCACCTTTTGTAGTGACATTAATGAGAATCAGACTTGTAACAATTTTAGTGCTCAAATGATGTTTAAAACCTAAATGTGCATGGCTGTTGGATAAACTTAAACTAGGCTTAATTGTCATCAATTTGTAGATATGGAGGCAGTGAATAGATACTTCTTCCACCCCACCCCCTCCGAAATGTTAGGTTTAACGTTGTCATATACTCTCAGGTACTCTACTGATTATGGCATGTTCAGATTCTGTATTGCTGATACTGAACATGATTGGAGAGAGGGCACCGAACAATATAAGTTCCTTGAACACTGCTTCGCATCTGTAGATAGACAGAAACAGCCATGGCTAATCTTCCTTGCACATAGGGTACTTGGTTACTCTTCTGGAGATTTTTACGCTGATGAAGGATCATTTGGAGAACCAATGGGGAGGGACAGCCTTCAAAAGCTTTGGCAGAAGTATAAAGTTGATATCGCCATATATGGTCATGTCCACAATTACGAAAGAACATGTCCCATTTACCAGGTATCCTAAAAACTTGAAATGTTCATGCAATATTTTTGTTCTCATCTTAGTTAAAATTCACGTCGAATGCCACAGATGACACTTCAGGTTCCAAGGACATTGAGAATAATGATGATCTTATACCTCCACCCCATGTAAATCTCTCCCAGAAAGTAAATATTCAACGTTTCCCTTTTCATAGGACCGTGTCTGACTAGCACGGGGATACAGATGAAATTTGACTTGTATAATATATTTTGACAAAGATATATATTTGGATGGAGGGAGTACTAAAGAGCTAAACTGCATGCACAAGTGTTTTACAAACTAGAGAGTGATTCGACATTTAATATTCTTGTTTCTCAAATATTTGTACATTCATTCTTTGACGCATTCTATGTGTCTTCATCAATGGCAGAATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCAATAGGCTCAATCTGA</genome_strand>
        <mrna_strand>CCATAAGGTGGATGCAATGAAAACATTCGTTATGTTGTTGCCCATTTTATGGGTTCTAGTTGCTCTTCAAGGGGTAACATCTCATGAAGATCATCCTCTAGCAAGGATTGCTGTTCATAATGCTATTGCTGCTTTGGATGCTCGTGCGTATATCAAAGCATCTCCTTCTGTCCTTGGGTCAAAC....................................................................................................................................................................GGCCTAAACCAAGAATGGATAACTCTGGAGTATGGCACAGGCAACCCGTCAAATGATGATTGGGTTGGAGTGTTTTCTCCTGCCAATTTCAG......................................................................................................................................................TGCAGCTACGTGTGACCCTGAAAATAACATGGTGACTCCACCACTTTTGTGTACAGCTCCTATAAAG.....................................................................................TACCAATTTGCAAATCGCTCCAATCCCAACTACAAAAGGACAGGAAAAGGATCGCTAAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCCTTCGCTTTGTTTTCTGGTGGATTACGGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCTGGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAA............................................................................................................................................................ATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTG.........................................................................................................................................................................................................................................................................GTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGT............................................................................................................................................................................................................................................ATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGTTTGGACACTCTTAAAATCTGTTTTTGTTTTAGAATAGAGAGCTAAGTGTTTATATCTGTGCATAGATATTTGTACTTTACCGTCTTGAAACTCTGGAAGTTGCTCTCTATTGAGTTTCATGTTCTTCCATTCAGAAGTTACACTTGACAGCGACCTATTATTGCCTTTTTAACGACAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTACGCCAATGGATATCTTTCTCAGTGGGATCAATTTACTTCTCAAGTAGAGCCAATTACTTCAAGAGTACCATACATGATTGCTAG.........................................................................................CGGCAACCATGAACGCGATTGGCCTGATAGTGGGTCATTTTATGGTAAAAAGGATTCAGGTGGAGAGTGTGGTGTCTTGGCTCAGACAATGTTCTATTTTCCTGCCGAAAATAGGGATAAGTTCTG..................................................................................................................................................................................................................................................................................................................................GTACTCTACTGATTATGGCATGTTCAGATTCTGTATTGCTGATACTGAACATGATTGGAGAGAGGGCACCGAACAATATAAGTTCCTTGAACACTGCTTCGCATCTGTAGATAGACAGAAACAGCCATGGCTAATCTTCCTTGCACATAGGGTACTTGGTTACTCTTCTGGAGATTTTTACGCTGATGAAGGATCATTTGGAGAACCAATGGGGAGGGACAGCCTTCAAAAGCTTTGGCAGAAGTATAAAGTTGATATCGCCATATATGGTCATGTCCACAATTACGAAAGAACATGTCCCATTTACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................AATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCCTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217747" ref_strand="+" ref_description="SGN-E217747 [cLEL-25-M23](-)">
      <seq>agcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacaatcttggcnatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgttcacaacaagtgtctccataaaacagcaatatataatttgcagttgaagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58186" stop="57177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57886" g_stop="57480" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="426"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E217747" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57886" e_stop="57480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGAC-ATCTTGGC-ATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCA</genome_strand>
        <mrna_strand>AGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACAATCTTGGCNATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217601" ref_strand="+" ref_description="SGN-E217601 [cLEL-25-K7](-)">
      <seq>caaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgttcacaacaagtgtctccataaaacagcaatatataatttgcagttgaagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58178" stop="57177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57878" g_stop="57480" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="416"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E217601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57878" e_stop="57480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCA</genome_strand>
        <mrna_strand>CAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541993" ref_strand="+" ref_description="SGN-E541993 [TUS-63-B5](-)">
      <seq>aagaacatgtcccatttaccagaatatttgtacaatgaccgagaagaactcgtacaagggacccttgaacgggacaatacatgtcgttgcgggaggaggtggagctggtctagtaaagtttacatccctccagactaagtggagtatattcaaagattacgattatggatttgtgaagatgacagcattcgatcattcaaacctcttgttcgagtacaagaagagcagcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttaatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58809" stop="57222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58509" g_stop="58488" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58487" i_stop="58091" i_length="397">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58090" g_stop="57521" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="593" r_length="571" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E541993" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58509" e_stop="58488"/>
          <exon e_start="58090" e_stop="57521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATGTCCCATTTACCAGGTATCCTAAAAACTTGAAATGTTCATGCAATATTTTTGTTCTCATCTTAGTTAAAATTCACGTCGAATGCCACAGATGACACTTCAGGTTCCAAGGACATTGAGAATAATGATGATCTTATACCTCCACCCCATGTAAATCTCTCCCAGAAAGTAAATATTCAACGTTTCCCTTTTCATAGGACCGTGTCTGACTAGCACGGGGATACAGATGAAATTTGACTTGTATAATATATTTTGACAAAGATATATATTTGGATGGAGGGAGTACTAAAGAGCTAAACTGCATGCACAAGTGTTTTACAAACTAGAGAGTGATTCGACATTTAATATTCTTGTTTCTCAAATATTTGTACATTCATTCTTTGACGCATTCTATGTGTCTTCATCAATGGCAGAATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTT-ATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAG</genome_strand>
        <mrna_strand>AAGAACATGTCCCATTTACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................AATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTAATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355193" ref_strand="+" ref_description="SGN-E355193 [cTOS-18-D8]">
      <seq>ttgaacgggacaatacatgtcgttgcgggaggaggtggagctggtctagtaaagtttacatccctccagactaagtggagtatattcaaagattacgattatggatttgtgaagatgacagcattcgatcattcaaacctcttgttcgagtacaagaagagcagcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58348" stop="57225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58048" g_stop="57527" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E355193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58048" e_stop="57527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCAC</genome_strand>
        <mrna_strand>TTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354132" ref_strand="+" ref_description="SGN-E354132 [cTOS-16-F10]">
      <seq>ttgaacgggacaatacatgtcgttgcgggaggaggtggagctggtctagtaaagtttacatccctccagactaagtggagtatattcaaagattacgattatggatttgtgaagatgacagcattcgatcattcaaacctcttgttcgagtacaagaagagcagcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaacaattggcttaaatgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58348" stop="57228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58048" g_stop="57528" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E354132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58048" e_stop="57528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCA</genome_strand>
        <mrna_strand>TTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354655" ref_strand="+" ref_description="SGN-E354655 [cTOS-17-L16]">
      <seq>aaagaacatgtcccatttaccagaatatttgtacaatgaccgagaagaactcgtacaagggacccttgaacgggacaatacatgtcgttgcggaaggaggtggagctggtctagtaaagtttacatccctccagactaagtggagtatattcaaagattacgattatggatttgtgaagatgacagcattcgatcattcaaacctcttgttcgagtacaagaagagcagcgatggcaaagtgtacgactctttcaatatttcccgggattacagagacatcttggcatgcactgtggatagctgcccaagcatgacattggcatcttgattggtttatgaagatgtcttcaaaagtttgatttctgttatatagcatcccactataccatcatcgtgcacaaagcatcctgcgttccgaggaatccaagttcagatgcacaaacaccaggagcctcacagatgaacagtttgagtgaatagatgatagagggaaacagattgcttattagcctttttttcaagtatttgtgttatcattcaatgtattgctatcatctttcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="58810" stop="57244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58510" g_stop="58488" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58487" i_stop="58091" i_length="397">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58090" g_stop="57540" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="574" r_length="551" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E354655" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58510" e_stop="58488"/>
          <exon e_start="58090" e_stop="57540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACATGTCCCATTTACCAGGTATCCTAAAAACTTGAAATGTTCATGCAATATTTTTGTTCTCATCTTAGTTAAAATTCACGTCGAATGCCACAGATGACACTTCAGGTTCCAAGGACATTGAGAATAATGATGATCTTATACCTCCACCCCATGTAAATCTCTCCCAGAAAGTAAATATTCAACGTTTCCCTTTTCATAGGACCGTGTCTGACTAGCACGGGGATACAGATGAAATTTGACTTGTATAATATATTTTGACAAAGATATATATTTGGATGGAGGGAGTACTAAAGAGCTAAACTGCATGCACAAGTGTTTTACAAACTAGAGAGTGATTCGACATTTAATATTCTTGTTTCTCAAATATTTGTACATTCATTCTTTGACGCATTCTATGTGTCTTCATCAATGGCAGAATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGG</genome_strand>
        <mrna_strand>AAAGAACATGTCCCATTTACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................AATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGAAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300734" ref_strand="+" ref_description="SGN-E300734 [cLEW-8-N13]">
      <seq>gttgcagtgtcaaatactgttgcctttacaaatccaaatgcaccattatacccgcggttagcacagggaaagacatggaatgaaatgactgttacatggacaagtggatatgatatcaatgaagcagagccctttgtggagtggggcccacaacgtggacaacagactcgttcaccggcagggactttgactatcgaccgtagtagcttgtgtggtgcaccagcaagaactgttggatggcgcgatcctggattcattcacactagttttctgaaggagttgtggcccaatttagtatatacctacaagctggggcataaactgtttaatggcacgtatatctggagtcagatgtacaaatttaaagcatcgccctatcctggccaaagctctcttcagcgagtggttatttttggtgacatgggaaaggaagaagctgatggctcaattgtgtacaatcaataccaacctggctcccttaacactaccaagcaaatcattgaggacttaaagaacattgacatagtctttcacattggtgatattgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="61106" stop="59119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60806" g_stop="60723" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60722" i_stop="60567" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60566" g_stop="60437" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="214" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60436" i_stop="60172" i_length="265">
            <donor d_prob="0.156" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60171" g_stop="60090" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="296" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60089" i_stop="59854" i_length="236">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59853" g_stop="59721" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="429" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59720" i_stop="59541" i_length="180">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59540" g_stop="59419" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="551" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E300734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60806" e_stop="60723"/>
          <exon e_start="60566" e_stop="60437"/>
          <exon e_start="60171" e_stop="60090"/>
          <exon e_start="59853" e_stop="59721"/>
          <exon e_start="59540" e_stop="59419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAAGTAAGTTTCTTTCTTCCACTGTTTCTTAATATGCAAAACAAGGTTGAAATTATGTTTCAGGCAGAATAATCAATGTGTTCTGCATCATCACTAATAGTTTGAATAATGACCACTTTGGAAGATCAGAAAAAATGACTGTTTAAACTTGATGCTCAGATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTGGTGGGTATTTTTTCCCTTCACATTGTGTCCTAAAACTAGCATCTGTTTTCCGTAAATGTAGTATTTGATGTATATCATCTGTTCTCCAATAATGTAACATATGATTGCACATGTTGGATACTTGATTAAATACAATGAGTGTATGATAAACAACTCTGCGTGGAATGCGCCTACTTCACTTTGACAAACACTGGATGAATCTCTTTTTATTCTGCATTAACTTAATAAAAGTTTCTTTTAGAAAGAATGGCATTCTGTTCTGCAGGTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGTGTAAGTTTACACTCTTCCTAGCAGTAGAAGGACAATAATCAAATCTTGAATGACATGTTTTATTGGGCATCCATTTCTGAAAATGTCAGATAACTTTGAGATTCTTCTTCTTTTCACTATAGTTGCATAGGAAAATACATCTACTGAAACCCTGTCTTTTGGATAAGACAGTTGTACATCATGCTAATGCAGGTTGACATTGAAATGTAAATTCAATGCACTTTCTGATTATGCAGATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGTTTGGACACTCTTAAAATCTGTTTTTGTTTTAGAATAGAGAGCTAAGTGTTTATATCTGTGCATAGATATTTGTACTTTACCGTCTTGAAACTCTGGAAGTTGCTCTCTATTGAGTTTCATGTTCTTCCATTCAGAAGTTACACTTGACAGCGACCTATTATTGCCTTTTTAACGACAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTA</genome_strand>
        <mrna_strand>GTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAA............................................................................................................................................................ATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTG.........................................................................................................................................................................................................................................................................GTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGT............................................................................................................................................................................................................................................ATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAG....................................................................................................................................................................................GAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541996" ref_strand="+" ref_description="SGN-E541996 [TUS-63-B5]">
      <seq>ggttgcagtgtcaaatactgttgcctttacaaatccaaatgcaccattatacccgcggttagcacagggaaagacatggaatgaaatgactgttacatggacaagtggatatgatatcaatgaagcagagccctttgtggagtggggcccacaacgtggacaacagactcgttcaccggcagggactttgactatcgnnaccgtagtagcttgtgtggtgcaccagcaagaactgttggatggcgcgatcctggattcattcacactagttttctgaaggagttgtggcccaatttagtatatacctacaagctggggcataaactggtttnnaatggcacgtanntatctggagtcagatgtacaaatttaaagcatcgccctatcctggccaaagctctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="61107" stop="59453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60807" g_stop="60723" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60722" i_stop="60567" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60566" g_stop="60437" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="217" r_length="132" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60436" i_stop="60172" i_length="265">
            <donor d_prob="0.156" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60171" g_stop="60090" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="299" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60089" i_stop="59854" i_length="236">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59853" g_stop="59753" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="405" r_length="106" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E541996" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60807" e_stop="60723"/>
          <exon e_start="60566" e_stop="60437"/>
          <exon e_start="60171" e_stop="60090"/>
          <exon e_start="59853" e_stop="59753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAAGTAAGTTTCTTTCTTCCACTGTTTCTTAATATGCAAAACAAGGTTGAAATTATGTTTCAGGCAGAATAATCAATGTGTTCTGCATCATCACTAATAGTTTGAATAATGACCACTTTGGAAGATCAGAAAAAATGACTGTTTAAACTTGATGCTCAGATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCG--ACCGTAGTAGCTTGTGTGGTGGGTATTTTTTCCCTTCACATTGTGTCCTAAAACTAGCATCTGTTTTCCGTAAATGTAGTATTTGATGTATATCATCTGTTCTCCAATAATGTAACATATGATTGCACATGTTGGATACTTGATTAAATACAATGAGTGTATGATAAACAACTCTGCGTGGAATGCGCCTACTTCACTTTGACAAACACTGGATGAATCTCTTTTTATTCTGCATTAACTTAATAAAAGTTTCTTTTAGAAAGAATGGCATTCTGTTCTGCAGGTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGTGTAAGTTTACACTCTTCCTAGCAGTAGAAGGACAATAATCAAATCTTGAATGACATGTTTTATTGGGCATCCATTTCTGAAAATGTCAGATAACTTTGAGATTCTTCTTCTTTTCACTATAGTTGCATAGGAAAATACATCTACTGAAACCCTGTCTTTTGGATAAGACAGTTGTACATCATGCTAATGCAGGTTGACATTGAAATGTAAATTCAATGCACTTTCTGATTATGCAGATATACCTACAAGCTGGGGCATAAACT-GTTT--AATGGCACGTA--TATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTC</genome_strand>
        <mrna_strand>GGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAA............................................................................................................................................................ATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGNNACCGTAGTAGCTTGTGTG.........................................................................................................................................................................................................................................................................GTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGT............................................................................................................................................................................................................................................ATATACCTACAAGCTGGGGCATAAACTGGTTTNNAATGGCACGTANNTATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688096" ref_strand="+" ref_description="SGN-E688096 [T3_tus_85_J21]">
      <seq>atgttcttctgtcaatcttctattcaggggctctgtaaaaagttcacataggattcaggataagttttggtgttcaaaaaagttgggttctttgcaagagcttggtgtaaaagccagtgaatttaatggtgttgcaattgctcatagcagttctagctttgcttccccttgtgccactcatgctatccaggcagtcttgggcaatgacaaagcaacaacaagctccactgttattttggaaaaacctcttcgcaaaaaattgaacaaagtggttcttgcttatagtggtggcttggacacttcagttattgtaccttggctaagggagaactatggctgtgaagttgtctgtttcactgcagatgttggtcaagggattaaggaattggaaggcttggaagcaaaggccaaggctagtggggcttgtcaattagtggtgaaggatttgcaagaagaatttgtgaaagattacatatttccttgtctgcgagctggtgctatctatgaaaggaaatacttgcttgggacatcaatggcccgcccggttattgctaaggcaatggttgatgttgccagagaggttggagctgatgctgtttctcatggatgcacagggaagggaaatgatcaggtccgttttgagctgacattctttgctctgaatcctgaactcagtgttgttgccccttggagggaatgggaaattacaggaagagaggatgctattgaatatgctaagaagcacaatgtaccagttccggtgacaaagaaatctatctatagcaaaaacagaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="67881" stop="73020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68181" g_stop="68221" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68222" i_stop="68326" i_length="105">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68327" g_stop="68385" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="100" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68495" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68496" g_stop="68577" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="182" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68578" i_stop="69873" i_length="1296">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69874" g_stop="70015" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="324" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70016" i_stop="70584" i_length="569">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70585" g_stop="70633" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="373" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70634" i_stop="70779" i_length="146">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70780" g_stop="70962" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="556" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70963" i_stop="72335" i_length="1373">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72336" g_stop="72410" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="631" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="72411" i_stop="72552" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72553" g_stop="72720" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="799" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E688096" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68181" e_stop="68221"/>
          <exon e_start="68327" e_stop="68385"/>
          <exon e_start="68496" e_stop="68577"/>
          <exon e_start="69874" e_stop="70015"/>
          <exon e_start="70585" e_stop="70633"/>
          <exon e_start="70780" e_stop="70962"/>
          <exon e_start="72336" e_stop="72410"/>
          <exon e_start="72553" e_stop="72720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTTCTGTCAATCTTCTATTCAGGGGCTCTGTAAAAAGTATAAATTTTTCACTTTTTTGGGTGTTTGTGTTGTCAGAAATGGTTTTAATCTTGTAAAGATTGATTTTTTGAGCTATTTTTGATGACCCTTTTGCAAATGCAGGTTCACATAGGATTCAGGATAAGTTTTGGTGTTCAAAAAAGTTGGGTTCTTTGCAAGAGGTTCTTGATATGTACCCTTTAATTTATTTTATATGTTTCATTGTTTATTACTTGAAATTTATACTGATGGGGTTTGTTTCTTTGCGTTTTATGCTGTTGTTTTATTGCAGCTTGGTGTAAAAGCCAGTGAATTTAATGGTGTTGCAATTGCTCATAGCAGTTCTAGCTTTGCTTCCCCTTGTGCCACTCATGGTAGTTTCTACTAGCTTTTTATTTCGTTTTTGTCCAACCTGCTTCTGAAAATATCTTTTTTTGAGCTGAGTTGTTATTGGAAATAACCTCTTGCGGGTAGTGATAAGGTCTACACCCGACCCTCCCAAGACCCCACTTGTGGGATCACATTGGATTAGTTGTTGTTGTTATTTGTTTTTTGGATAGATTATATAGGTTTGAAACACGTCCATTTAGGTGCGAGCTTGATTCATTTTCTTGTTTTGGTTCTATCTTGTTGAATATATTTTTGTTAAATGGTTGGTGGTGACTGGTGACTTAAGGTTTAAGGTCAGATTATCATATTAATTCTAATGCTTTATCAGTTTCTGATGTGGCTAAATGATTTGTTGTAGTGGACCTTAAATTACTGCTATTCTGATGCAGTACACTTTGTGAACAATCTTATCTTCAAAGGGAATACATTTTTGTCTTCATTCATGTTCTTGTGAAGTTGAAAATGTTTCTTGTTCCATATGACTTATCATATTGACTTCCAAGCACACATCTTTTCCCAGCTTGAATCATGATTTAGTGATTTTTGTTCCAACACATTGACCAATGGTCTTTATTAGCATTCAAATGTCTCTGTATACAGCTATATTAGCATTTGATGTCTCTATATCTAGTAGAATATAAGGAGACCATATAAAGTACCAAATTAGCATTGTGGAAATGTTTTCCATGAGAAATATTTTTCTCATCTTTTTGATGTTTGGTTGGATATGAAGTTGGAGGAATGTGATTGTGGTGGAGGCTGGGGGCAGGGTTGGGGGTTGGGAATATTGTTCGTTGATCATAAGCAGGGTAGAGAAATGTGGACATGTAACATTTTAGTAGGAACTGGATTTGAGTGGAAAATGACTTTCCTTGGTTTCCTCTTAAAGAAAATATTTTCCACAGCTTCAGCAACCAAATATTGGAAAATCAAGGAAAACTGTTTTATTGGAAAACATTTTACATTATGCAAAAATCGAGGCCACTATGTTGTTATACCCTTTTCTTTTTAAAAATGCTCAAGGCATGTCCAACTACATGTTTTCAGTTTGTAATAATGCTAGATAGTTTTGAATGGTGTAGAAAGTTGATCTTTTTCTTCAGATACTGCAGAAAATGACTGTCGAACTTGACCATGAGATTTATATGTTCACCCTAAGGAACTTCATTGTGCAACCCATTAGGGGTGCCATCAAAGTACCTACCTGGTTGGCTTTGACAATTTTAGTCGCCGATTTTCAGTGTATAGGGTAATGATGAAAAAATACCTGAATATTGCAGCTATCCAGGCAGTCTTGGGCAATGACAAAGCAACAACAAGCTCCACTGTTATTTTGGAAAAACCTCTTCGCAAAAAATTGAACAAAGTGGTTCTTGCTTATAGTGGTGGCTTGGACACTTCAGTTATTGTACCTTGGCTAAGGTAGCTCCTTTCTGTTCTATTGAATTTTCTTTTACAGTATTTTTGACCTATGATATGTTACTTCTGTTGTGTCATGTGTTAACTGTAACTCCCAAAATATATGGTGGATTGGCCTCAAATGTTCATTACCACTTTCAGCATTATGTGTTTGTTCTGGAGAAGTTGCTAGAAATTTCTCTTGTATGTCAGTCTTACAAGATGGAAACTCTGTAACCTTGTTCAGTTTGCAACATATATGTGATTCCAAACTACATGTAGAAAGAGAAAAGACTGTCAAAATATAAGAACGCTATACTTTTTGTGTATGGAAAAGGACTTAAGGGAATGAAAATAGCTTCAGTTTACAGATAATTACTATATTTGACCTTATTTTTTTCTATTCAAAAGAAGATAATTTTTATAGGTTATTGGGAAGGTATCCAAGTAATCCAGAAAGTTGAATATAAAAATCCATGATAACCAAAATGAGAAAATAAGTTTCCAGAATAAGTGAACGATTATGTTGCATGGTATGTATGCCATGTTTTCATTCCTTCGTCTATCTCTTAGTGATCTTTTTCATTTTGCAGGGAGAACTATGGCTGTGAAGTTGTCTGTTTCACTGCAGATGTTGGTCAAGTATGTTTTTCTTTCTAGTCACTTATTGGTTCTTATGTTCTTGTTCAGCAAAAAAATATGGATTATAGTGCATAAAATTTAACAGTCAAACAAATAAGTTTCTTTTCGTAGGAACTCATATCTGAGATGAATTATTACTTTCTCAGGGGATTAAGGAATTGGAAGGCTTGGAAGCAAAGGCCAAGGCTAGTGGGGCTTGTCAATTAGTGGTGAAGGATTTGCAAGAAGAATTTGTGAAAGATTACATATTTCCTTGTCTGCGAGCTGGTGCTATCTATGAAAGGAAATACTTGCTTGGGACATCAATGGCCCGCCCGGTTATTGCTAAGGTGAACTGCAAATCTTAAATAAGAAATTGAATCTTTTTTGGTCATGTCCCCTTGCATGAACAACCCCAAACCTTCTTAGGAAAAGACAGTAAAGAGTTTCTGTTGGAGAAGTTCATGTTTGTTTGCCAACCAAATAGAGGTTAAATACAAGTTTAGTCTTAATACCATTTTTGGCTCCGGTCAGTATGCATTTTTTGGCACCCAACCAAGGATAGTGGACAATTTTGCTCTTATTAAGCAGGTTATGCAATTAAGTTCCTATATATTTGAATTATGTATAATTAGTTTGTATAGTACCCAAGTTTTGTCTCCTGACGGGGACTTTCTTCTGCATAGTTCATTTTTAAGTCGTAATTTTTCCTAAAACACAAGCTTAAAACAAAAGAGTGTAAAAGGAGAAGAAGGAAAAAGGCGTCACAATCAAACAGTCAATCAGACAAAATCACAGGCCCAACTGCTCTTTCCGTGAAAATTGAACTTGTGAGAGAATGATGTATAGGTCTTGATCGATGATTCTTGAGACAGATTGAACTTCTGCTAGGATTCTAGGTAATCATTCCAATAATTGGACTAAGCTTGTTATTACACGTCTTGAGCAACTTCTCAAGGATATTAAATATGGTGGATTTTGGAGAAATCCCAAGATTTGGTGCTTCACTGGGTGTAGGTAGGCTATTAACAAACCTAGTCAGTTAATGAAGGTGTCATATGCACCATATTTGTGCATGCATTAAAGAGAATCAAGATTCTGGAAAATAGGCATTGTTTTGGAAAAAGTAATATGTCTGTCTCTGAGTCACTTATGGGGCATCTTGCTGTCTCTCTGGCTGTTGTTTGCTTGGGAGACGTATGCAGTACCCTAGATGAATTTCTCTGATTGGATTCAGGTTTGCCTCTCAAAATGCAACCTGACTGTATGAGAGGAAACATTACCTTTTGGGGGAATGTTATAGAAAGTAGGGGCTTTTTGCTGGCTCCTCCAAAATTGAGCTACACTGGTTCAACAAAATTTTTATACGATCCTAGCAACATAGCCTGGGAGACATATACAGCACCCATGATGTGTTTTGTACATATCCTAGGTGTCTGCTACTAGTTTCTTTTCTTTCCCTATATTAAATGTGTTTTGTACATCAAGCGTTGACATTTCAGAAAGATGAAACTGCTAGTAAAGTACTAGCATGGACATCTTCACTGTGCGATCAGGGGGCCAAACTTTTCATGGTCATATATTATCCGCTAAACTGTCTTACTAACAGTCCAGTTATGAAGCTGATATAACAATTGATTAAGTGAACATCCACGTTTTAGCATCAGTGCTTTCATTGCCTGAATTTGGGTTGGACTCTGAAATTTAGCCTGATAAAATGCAGGCAATGGTTGATGTTGCCAGAGAGGTTGGAGCTGATGCTGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAGGTATTATCCTGGATCTTTTAACATTACTATGTCAATTTAGCGGATCATCACTATGCAGCATCATCTTAATTCTATTTTGTCTGAGCCCAGGGGACTGCTTAATGAACTCATCTTATTCAACTATGCTTCTTTACCACTACAGGTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTG</genome_strand>
        <mrna_strand>ATGTTCTTCTGTCAATCTTCTATTCAGGGGCTCTGTAAAAA.........................................................................................................GTTCACATAGGATTCAGGATAAGTTTTGGTGTTCAAAAAAGTTGGGTTCTTTGCAAGAG..............................................................................................................CTTGGTGTAAAAGCCAGTGAATTTAATGGTGTTGCAATTGCTCATAGCAGTTCTAGCTTTGCTTCCCCTTGTGCCACTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCAGGCAGTCTTGGGCAATGACAAAGCAACAACAAGCTCCACTGTTATTTTGGAAAAACCTCTTCGCAAAAAATTGAACAAAGTGGTTCTTGCTTATAGTGGTGGCTTGGACACTTCAGTTATTGTACCTTGGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTATGGCTGTGAAGTTGTCTGTTTCACTGCAGATGTTGGTCAA..................................................................................................................................................GGGATTAAGGAATTGGAAGGCTTGGAAGCAAAGGCCAAGGCTAGTGGGGCTTGTCAATTAGTGGTGAAGGATTTGCAAGAAGAATTTGTGAAAGATTACATATTTCCTTGTCTGCGAGCTGGTGCTATCTATGAAAGGAAATACTTGCTTGGGACATCAATGGCCCGCCCGGTTATTGCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGGTTGATGTTGCCAGAGAGGTTGGAGCTGATGCTGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAG..............................................................................................................................................GTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAAAAACAGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336507" ref_strand="+" ref_description="SGN-E336507 [cTOE-4-H2]">
      <seq>tgttcttctgtcaatcttctattcaggggctctgtaaaaagttcacataggattcaggataagttttggtgttcaaaaaagttgggttctttgcaagagcttggtgtaaaagccagtgaatttaatggtgttgcaattgctcatagcagttctagctttgcttccccttgtgccactcatgctatccaggcagtcttgggcaatgacaaagcaacaacaagctccactgttattttggaaaaacctcttcgcaaaaaattgaacaaagtggttcttgcttatagtggtggcttggacacttcaattattgtaccttggctaagggagaactatggctgtgaagttgtctgtttcactgcagatgttggtcaagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="67882" stop="70934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68182" g_stop="68221" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68222" i_stop="68326" i_length="105">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68327" g_stop="68385" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="99" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68495" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68496" g_stop="68577" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="181" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68578" i_stop="69873" i_length="1296">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69874" g_stop="70015" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="323" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70016" i_stop="70584" i_length="569">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70585" g_stop="70633" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="372" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70634" i_stop="70779" i_length="146">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70780" g_stop="70784" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="377" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E336507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68182" e_stop="68221"/>
          <exon e_start="68327" e_stop="68385"/>
          <exon e_start="68496" e_stop="68577"/>
          <exon e_start="69874" e_stop="70015"/>
          <exon e_start="70585" e_stop="70633"/>
          <exon e_start="70780" e_stop="70784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTCTGTCAATCTTCTATTCAGGGGCTCTGTAAAAAGTATAAATTTTTCACTTTTTTGGGTGTTTGTGTTGTCAGAAATGGTTTTAATCTTGTAAAGATTGATTTTTTGAGCTATTTTTGATGACCCTTTTGCAAATGCAGGTTCACATAGGATTCAGGATAAGTTTTGGTGTTCAAAAAAGTTGGGTTCTTTGCAAGAGGTTCTTGATATGTACCCTTTAATTTATTTTATATGTTTCATTGTTTATTACTTGAAATTTATACTGATGGGGTTTGTTTCTTTGCGTTTTATGCTGTTGTTTTATTGCAGCTTGGTGTAAAAGCCAGTGAATTTAATGGTGTTGCAATTGCTCATAGCAGTTCTAGCTTTGCTTCCCCTTGTGCCACTCATGGTAGTTTCTACTAGCTTTTTATTTCGTTTTTGTCCAACCTGCTTCTGAAAATATCTTTTTTTGAGCTGAGTTGTTATTGGAAATAACCTCTTGCGGGTAGTGATAAGGTCTACACCCGACCCTCCCAAGACCCCACTTGTGGGATCACATTGGATTAGTTGTTGTTGTTATTTGTTTTTTGGATAGATTATATAGGTTTGAAACACGTCCATTTAGGTGCGAGCTTGATTCATTTTCTTGTTTTGGTTCTATCTTGTTGAATATATTTTTGTTAAATGGTTGGTGGTGACTGGTGACTTAAGGTTTAAGGTCAGATTATCATATTAATTCTAATGCTTTATCAGTTTCTGATGTGGCTAAATGATTTGTTGTAGTGGACCTTAAATTACTGCTATTCTGATGCAGTACACTTTGTGAACAATCTTATCTTCAAAGGGAATACATTTTTGTCTTCATTCATGTTCTTGTGAAGTTGAAAATGTTTCTTGTTCCATATGACTTATCATATTGACTTCCAAGCACACATCTTTTCCCAGCTTGAATCATGATTTAGTGATTTTTGTTCCAACACATTGACCAATGGTCTTTATTAGCATTCAAATGTCTCTGTATACAGCTATATTAGCATTTGATGTCTCTATATCTAGTAGAATATAAGGAGACCATATAAAGTACCAAATTAGCATTGTGGAAATGTTTTCCATGAGAAATATTTTTCTCATCTTTTTGATGTTTGGTTGGATATGAAGTTGGAGGAATGTGATTGTGGTGGAGGCTGGGGGCAGGGTTGGGGGTTGGGAATATTGTTCGTTGATCATAAGCAGGGTAGAGAAATGTGGACATGTAACATTTTAGTAGGAACTGGATTTGAGTGGAAAATGACTTTCCTTGGTTTCCTCTTAAAGAAAATATTTTCCACAGCTTCAGCAACCAAATATTGGAAAATCAAGGAAAACTGTTTTATTGGAAAACATTTTACATTATGCAAAAATCGAGGCCACTATGTTGTTATACCCTTTTCTTTTTAAAAATGCTCAAGGCATGTCCAACTACATGTTTTCAGTTTGTAATAATGCTAGATAGTTTTGAATGGTGTAGAAAGTTGATCTTTTTCTTCAGATACTGCAGAAAATGACTGTCGAACTTGACCATGAGATTTATATGTTCACCCTAAGGAACTTCATTGTGCAACCCATTAGGGGTGCCATCAAAGTACCTACCTGGTTGGCTTTGACAATTTTAGTCGCCGATTTTCAGTGTATAGGGTAATGATGAAAAAATACCTGAATATTGCAGCTATCCAGGCAGTCTTGGGCAATGACAAAGCAACAACAAGCTCCACTGTTATTTTGGAAAAACCTCTTCGCAAAAAATTGAACAAAGTGGTTCTTGCTTATAGTGGTGGCTTGGACACTTCAGTTATTGTACCTTGGCTAAGGTAGCTCCTTTCTGTTCTATTGAATTTTCTTTTACAGTATTTTTGACCTATGATATGTTACTTCTGTTGTGTCATGTGTTAACTGTAACTCCCAAAATATATGGTGGATTGGCCTCAAATGTTCATTACCACTTTCAGCATTATGTGTTTGTTCTGGAGAAGTTGCTAGAAATTTCTCTTGTATGTCAGTCTTACAAGATGGAAACTCTGTAACCTTGTTCAGTTTGCAACATATATGTGATTCCAAACTACATGTAGAAAGAGAAAAGACTGTCAAAATATAAGAACGCTATACTTTTTGTGTATGGAAAAGGACTTAAGGGAATGAAAATAGCTTCAGTTTACAGATAATTACTATATTTGACCTTATTTTTTTCTATTCAAAAGAAGATAATTTTTATAGGTTATTGGGAAGGTATCCAAGTAATCCAGAAAGTTGAATATAAAAATCCATGATAACCAAAATGAGAAAATAAGTTTCCAGAATAAGTGAACGATTATGTTGCATGGTATGTATGCCATGTTTTCATTCCTTCGTCTATCTCTTAGTGATCTTTTTCATTTTGCAGGGAGAACTATGGCTGTGAAGTTGTCTGTTTCACTGCAGATGTTGGTCAAGTATGTTTTTCTTTCTAGTCACTTATTGGTTCTTATGTTCTTGTTCAGCAAAAAAATATGGATTATAGTGCATAAAATTTAACAGTCAAACAAATAAGTTTCTTTTCGTAGGAACTCATATCTGAGATGAATTATTACTTTCTCAGGGGAT</genome_strand>
        <mrna_strand>TGTTCTTCTGTCAATCTTCTATTCAGGGGCTCTGTAAAAA.........................................................................................................GTTCACATAGGATTCAGGATAAGTTTTGGTGTTCAAAAAAGTTGGGTTCTTTGCAAGAG..............................................................................................................CTTGGTGTAAAAGCCAGTGAATTTAATGGTGTTGCAATTGCTCATAGCAGTTCTAGCTTTGCTTCCCCTTGTGCCACTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCAGGCAGTCTTGGGCAATGACAAAGCAACAACAAGCTCCACTGTTATTTTGGAAAAACCTCTTCGCAAAAAATTGAACAAAGTGGTTCTTGCTTATAGTGGTGGCTTGGACACTTCAATTATTGTACCTTGGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTATGGCTGTGAAGTTGTCTGTTTCACTGCAGATGTTGGTCAA..................................................................................................................................................GGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212954" ref_strand="+" ref_description="SGN-E212954 [cLEC-72-C19]">
      <seq>ccaaggctagtggggcttgtcaattagtggtgaaggatttgcaagaagaatttgtgaaagattacatatttccttgtctgcgagctggtgctatctatgaaaggaaatacttgcttgggacatcaatggcccgcccggttattgctaaggcaatggttgatgttgccagagaggttggagctgatgctgtttctcatggatgcacagggaagggaaatgatcaggtccgttttgagctgacattctttgctctgaatcctgaactcagtgttgttgccccttggagggaatgggaaattacaggaagagaagatgctattgaatatgctaagaagcacaatggaccaattccggtgaccaagaaatctatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="70514" stop="73002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70814" g_stop="70962" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70963" i_stop="72335" i_length="1373">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72336" g_stop="72410" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72411" i_stop="72552" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72553" g_stop="72702" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="374" r_length="150" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E212954" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70814" e_stop="70962"/>
          <exon e_start="72336" e_stop="72410"/>
          <exon e_start="72553" e_stop="72702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCTAGTGGGGCTTGTCAATTAGTGGTGAAGGATTTGCAAGAAGAATTTGTGAAAGATTACATATTTCCTTGTCTGCGAGCTGGTGCTATCTATGAAAGGAAATACTTGCTTGGGACATCAATGGCCCGCCCGGTTATTGCTAAGGTGAACTGCAAATCTTAAATAAGAAATTGAATCTTTTTTGGTCATGTCCCCTTGCATGAACAACCCCAAACCTTCTTAGGAAAAGACAGTAAAGAGTTTCTGTTGGAGAAGTTCATGTTTGTTTGCCAACCAAATAGAGGTTAAATACAAGTTTAGTCTTAATACCATTTTTGGCTCCGGTCAGTATGCATTTTTTGGCACCCAACCAAGGATAGTGGACAATTTTGCTCTTATTAAGCAGGTTATGCAATTAAGTTCCTATATATTTGAATTATGTATAATTAGTTTGTATAGTACCCAAGTTTTGTCTCCTGACGGGGACTTTCTTCTGCATAGTTCATTTTTAAGTCGTAATTTTTCCTAAAACACAAGCTTAAAACAAAAGAGTGTAAAAGGAGAAGAAGGAAAAAGGCGTCACAATCAAACAGTCAATCAGACAAAATCACAGGCCCAACTGCTCTTTCCGTGAAAATTGAACTTGTGAGAGAATGATGTATAGGTCTTGATCGATGATTCTTGAGACAGATTGAACTTCTGCTAGGATTCTAGGTAATCATTCCAATAATTGGACTAAGCTTGTTATTACACGTCTTGAGCAACTTCTCAAGGATATTAAATATGGTGGATTTTGGAGAAATCCCAAGATTTGGTGCTTCACTGGGTGTAGGTAGGCTATTAACAAACCTAGTCAGTTAATGAAGGTGTCATATGCACCATATTTGTGCATGCATTAAAGAGAATCAAGATTCTGGAAAATAGGCATTGTTTTGGAAAAAGTAATATGTCTGTCTCTGAGTCACTTATGGGGCATCTTGCTGTCTCTCTGGCTGTTGTTTGCTTGGGAGACGTATGCAGTACCCTAGATGAATTTCTCTGATTGGATTCAGGTTTGCCTCTCAAAATGCAACCTGACTGTATGAGAGGAAACATTACCTTTTGGGGGAATGTTATAGAAAGTAGGGGCTTTTTGCTGGCTCCTCCAAAATTGAGCTACACTGGTTCAACAAAATTTTTATACGATCCTAGCAACATAGCCTGGGAGACATATACAGCACCCATGATGTGTTTTGTACATATCCTAGGTGTCTGCTACTAGTTTCTTTTCTTTCCCTATATTAAATGTGTTTTGTACATCAAGCGTTGACATTTCAGAAAGATGAAACTGCTAGTAAAGTACTAGCATGGACATCTTCACTGTGCGATCAGGGGGCCAAACTTTTCATGGTCATATATTATCCGCTAAACTGTCTTACTAACAGTCCAGTTATGAAGCTGATATAACAATTGATTAAGTGAACATCCACGTTTTAGCATCAGTGCTTTCATTGCCTGAATTTGGGTTGGACTCTGAAATTTAGCCTGATAAAATGCAGGCAATGGTTGATGTTGCCAGAGAGGTTGGAGCTGATGCTGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAGGTATTATCCTGGATCTTTTAACATTACTATGTCAATTTAGCGGATCATCACTATGCAGCATCATCTTAATTCTATTTTGTCTGAGCCCAGGGGACTGCTTAATGAACTCATCTTATTCAACTATGCTTCTTTACCACTACAGGTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTAT</genome_strand>
        <mrna_strand>CCAAGGCTAGTGGGGCTTGTCAATTAGTGGTGAAGGATTTGCAAGAAGAATTTGTGAAAGATTACATATTTCCTTGTCTGCGAGCTGGTGCTATCTATGAAAGGAAATACTTGCTTGGGACATCAATGGCCCGCCCGGTTATTGCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGGTTGATGTTGCCAGAGAGGTTGGAGCTGATGCTGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAG..............................................................................................................................................GTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAAGATGCTATTGAATATGCTAAGAAGCACAATGGACCAATTCCGGTGACCAAGAAATCTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697795" ref_strand="+" ref_description="SGN-E697795 [FA04BB10]">
      <seq>cgtttctcatggatgcacagggaagggaaatgatcagtgttgttgccccttggagggaatgggaaattacaggaagagaggatgctattgaatatgctaagaagcacaatgtaccagttccggtgacaaagaaatctatctatagcagagacagaaacttgtggcatcttagtcacgaggctctgccactgggccaaaatttagacgggcacttccaaagtgcaatggagcccaccaacctaggtcatgggccttcctgatcgcccatcgaccctatgcagggagatattcttgaggaccctgcaaatgagccaatgaaggatatgtatatgatgtcagttgatccccaagatgcacctgatcaacctgagtatgtgaacattgggatagttgctggtattcctgtttcagtaaatggaaaggagctctctcctgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72075" stop="74302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72374" g_stop="72410" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72411" i_stop="72596" i_length="186">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.127" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72597" g_stop="72738" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="179" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72739" i_stop="73159" i_length="421">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73160" g_stop="73261" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="281" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73262" i_stop="73344" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73345" g_stop="73433" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="370" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73527" g_stop="74002" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="846" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E697795" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72374" e_stop="72410"/>
          <exon e_start="72597" e_stop="72738"/>
          <exon e_start="73160" e_stop="73261"/>
          <exon e_start="73345" e_stop="73433"/>
          <exon e_start="73527" e_stop="74002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAGGTATTATCCTGGATCTTTTAACATTACTATGTCAATTTAGCGGATCATCACTATGCAGCATCATCTTAATTCTATTTTGTCTGAGCCCAGGGGACTGCTTAATGAACTCATCTTATTCAACTATGCTTCTTTACCACTACAGGTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAGGTAATTATAGTTTGTGTTGATCTTGTGTAGCTTGTGATATTCATCTAGTATGCTGATGTGTTCTATATCCACTGACTTTGTTAGAAGTTGGAACTGTTTTCATCTCTTATTTGTTCTTGTCAAAATGTCAAATTTTTTTTCTCAACTTCAGCTTCATGCTTTTTCTTCAATTTTGCTGCAACTTTTTTCTTTTTGCTAGGAATTTTGATGAAATGCACAAGCTCATCTTTCGTAGGACAATTAGTATATATAATGTGTAAAATAGAGTGATATGAGGTACCAGTCTTAATTGAGATTTGTATAGGATTATCATAGTCGGTAAATGAATCACATAGAAGATGAATCTCCGCTCTTAATAAATTTTAGTAAACTACGAATAAGAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATC</genome_strand>
        <mrna_strand>CGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAG..........................................................................................................................................................................................TGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATGCAG...................................................................................GGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA.............................................................................................GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552409" ref_strand="+" ref_description="SGN-E552409 [cTSB-3-N12]">
      <seq>gcacaatgtaccacttccggtgacaaagaaatctatctatagcagagacagaaacttgtggcatcttagtcacgagggagatattcttgaggaccctgcaaatgagccaatgaaggatatgtatatgatgtcagttgatccccaagatgcacctgatcaacctgagtatgtgaacattgggatagttgctggtattcctgtttcagtaaatggaaaggagctctctcctgcaactcttctttttgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaagggtctttaaattttttttcgcgtcgtgaattgatggtttagtgttgacagttccatcaaagggtcaagtagaatcttgtttttttccatttcatagcactgtagtttttttgtacggctttggaggctagtttatcgttncaattgtcttgcagaaatttcctctggttcaatatatttgaaagtccattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72363" stop="74568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72663" g_stop="72738" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72739" i_stop="73344" i_length="606">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73345" g_stop="73433" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="165" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73527" g_stop="74272" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="911" r_length="746" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E552409" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72663" e_stop="72738"/>
          <exon e_start="73345" e_stop="73433"/>
          <exon e_start="73527" e_stop="74272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAGGTAATTATAGTTTGTGTTGATCTTGTGTAGCTTGTGATATTCATCTAGTATGCTGATGTGTTCTATATCCACTGACTTTGTTAGAAGTTGGAACTGTTTTCATCTCTTATTTGTTCTTGTCAAAATGTCAAATTTTTTTTCTCAACTTCAGCTTCATGCTTTTTCTTCAATTTTGCTGCAACTTTTTTCTTTTTGCTAGGAATTTTGATGAAATGCACAAGCTCATCTTTCGTAGGACAATTAGTATATATAATGTGTAAAATAGAGTGATATGAGGTACCAGTCTTAATTGAGATTTGTATAGGATTATCATAGTCGGTAAATGAATCACATAGAAGATGAATCTCCGCTCTTAATAAATTTTAGTAAACTACGAATAAGAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGC</genome_strand>
        <mrna_strand>GCACAATGTACCACTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA.............................................................................................GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTTTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTTTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTNCAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201580" ref_strand="+" ref_description="SGN-E201580 [cLEC-11-G5]">
      <seq>gaaactaacacatcaaaaattaagaaaatgttatgacgtaggctctgccactgggccaaaatttagacgggcacttccaaagtgcaatggagcccaccaacctaggtcatgggccttcctgatcgcccatcgaccctattcaggtaaatttgaagaaaatattgaagtatggccatgtgaataactgattatacctgtaaaactcattcgaaaatggtatttgaagggagatattcttgaggaccctgcaaatgagccaatgaaggatatgtatatgatgtcagttgatccccaagatgcacctgatcaacctgagtatgtgaacattgggatagttgctggtattcctgtttcagtaaatggaaaggagctctctcctgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72819" stop="74066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73119" g_stop="73433" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73527" g_stop="73766" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="555" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E201580" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73119" e_stop="73433"/>
          <exon e_start="73527" e_stop="73766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAAC</genome_strand>
        <mrna_strand>GAAACTAACACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTCGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA.............................................................................................GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276539" ref_strand="+" ref_description="SGN-E276539 [cLEN-17-E16]">
      <seq>aacatcaaaaattaagaaaatgttatgacgtaggctctgccactgggccaaaatttagacgggcacttccaaagtgcaatggagcccaccaacctaggtcatgggccttcctgatcgcccatcgaccctattcaggtaaatttgaagaaaatattgaagtatggccatgtgaataactgattatacctgtaaaactcatttgaaaatggtatttgaagggagatattcttgaggaccctgcaaatgagccaatgaaggatatgtatatgatgtcagttgatccccaagatgcacctgatcaacctgagtgagaatcttctattttgattttcttatttattgtagtaaaaagatctaatgcatttctttctcactttcaaagctgcttctaactgtgcaggtatgtgaacattgggatagttgctggtattcctgtttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72827" stop="73868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73127" g_stop="73568" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E276539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73127" e_stop="73568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGT</genome_strand>
        <mrna_strand>AACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252922" ref_strand="+" ref_description="SGN-E252922 [cLEG-25-C15]">
      <seq>caagatgcacctgatcaacctgagtatgtgaacattgggatagttgctggtattcctgtttcagtaaatggaaaggagctctctcctgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73111" stop="74333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73433" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73527" g_stop="74033" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="530" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E252922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73433"/>
          <exon e_start="73527" e_stop="74033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTA</genome_strand>
        <mrna_strand>CAAGATGCACCTGATCAACCTGA.............................................................................................GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689955" ref_strand="+" ref_description="SGN-E689955 [LH_Ea02E01]">
      <seq>cgctttaaatggaaaggagctctctcccgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaatcggctcgttgggatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtacaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctcttgccctcaaatatgccgagttagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaagggtctttaaatttgttttcacgccatgaattgatggtttagtgttgacagttccatcaaagggtcaagtagaatcttgttttttccatttcatagcactgaagtttttttgtacggctctgaaggctagtttatcgctcaaattgtcttgcagaaatttcctctggttcaatatatttgaaagtccattaagaaaaattgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73268" stop="135641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73563" g_stop="74276" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.497" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74354" g_stop="74367" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="727" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E689955" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73563" e_stop="74276"/>
          <exon e_start="74354" e_stop="74367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAATCTTGCAGTTTTGCTTTCCCCTTCTGATTAATCTCATTTGTGTTTGATTACTAAATCTTGTTTGAGCAATTGACTAGTACACAACAAAATG</genome_strand>
        <mrna_strand>CGCTTTAAATGGAAAGGAGCTCTCTCCCGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATCGGCTCGTTGGGATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTACAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTTGCCCTCAAATATGCCGAGTTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCACGCCATGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTG-TTTTTTCCATTTCATAGCACTGAAGTTTTTTTGTACGGCTCTGAAGGCTAGTTTATCGCTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAA.............................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693795" ref_strand="+" ref_description="SGN-E693795 [LH_Ea02E01](-)">
      <seq>cagtaaatggaaaggagctctctcccgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaatcggctcgttgggatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtacaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctcttgccctcaaatatgccgagttagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaagggtctttaaatttgttttcacgccatgaattgatggtttagtgttgacagttccatcaaagggtcaagtagaatcttgttttttccatttcatagcactgaagtttttttgtacggctctgaaggctagtttatcgctcaaattgtcttgcagaaatttcctctggttcaatataatgggaagtccattaagaaaaattgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73265" stop="135644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73565" g_stop="74276" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.497" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74354" g_stop="74367" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="725" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E693795" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73565" e_stop="74276"/>
          <exon e_start="74354" e_stop="74367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAATCTTGCAGTTTTGCTTTCCCCTTCTGATTAATCTCATTTGTGTTTGATTACTAAATCTTGTTTGAGCAATTGACTAGTACACAACAAAATG</genome_strand>
        <mrna_strand>CAGTAAATGGAAAGGAGCTCTCTCCCGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATCGGCTCGTTGGGATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTACAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTTGCCCTCAAATATGCCGAGTTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCACGCCATGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTG-TTTTTTCCATTTCATAGCACTGAAGTTTTTTTGTACGGCTCTGAAGGCTAGTTTATCGCTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATAATGGGAAGTCCATTAAGAAAAATTGCAAAA.............................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270241" ref_strand="+" ref_description="SGN-E270241 [cLEM-1-H12]">
      <seq>ttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaagggtctttaaatttgttttcgcgtcgtgaattgatggtttagtgttgacagttccatcaaagggtcaagtagaatcttgtttttttccatttcatagcactgtagtttttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73355" stop="74484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73655" g_stop="74184" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E270241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73655" e_stop="74184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTA</genome_strand>
        <mrna_strand>TTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270392" ref_strand="+" ref_description="SGN-E270392 [cLEM-1-H10]">
      <seq>ttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacactggatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttagcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcattgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcacgattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaacggtctgtaaaatcgttttcgcgtcgtgaattgatggtttaacgttgacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="73355" stop="74421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73655" g_stop="74121" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E270392" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73655" e_stop="74121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGT</genome_strand>
        <mrna_strand>TTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTGGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTAGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCATTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCACGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAACGGTCTGTAAAATCGTTTTCGCGTCGTGAATTGATGGTTTAACGTTGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315357" ref_strand="+" ref_description="SGN-E315357 [cTOA-24-N10]">
      <seq>ttgtctttcgctgaatactctgaactgtgaaagatgctccattgttttatcacatttcgtcaagacaggtcaagttctctctccaaagcacgtctcttccatggagcacgttctacctttatggatgacctcatggaacttaaagggtggtgattctctatacaagcaagtacgtttaggtgtcagagtttcttcacttgacagccttgctatggttgacctattacaatctgctggatcacattacaagaaagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgctttcaaattacgacttggggtgatttcaagtcatcattcagtatgtcttggatcttccaatgatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83476" stop="86414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83776" g_stop="83849" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83850" i_stop="84174" i_length="325">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.346" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84175" g_stop="84313" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="213" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84314" i_stop="84875" i_length="562">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.562" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84876" g_stop="84916" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="254" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84917" i_stop="84998" i_length="82">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84999" g_stop="85186" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="442" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85902" g_stop="86114" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="655" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E315357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83776" e_stop="83849"/>
          <exon e_start="84175" e_stop="84313"/>
          <exon e_start="84876" e_stop="84916"/>
          <exon e_start="84999" e_stop="85186"/>
          <exon e_start="85902" e_stop="86114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTTCGCTGAATACTCTGAACTGTGAAAGATGCTCCATTGTTTTATCACATTTCGTCAAGACAGGTCAAGGTTAGTAGATCATCTTAATTTTATCATAGTCATCAGAAGGGATAACTGTCTGTCTGTATCCATGCCCTAGAATATCATCTGAGTAGGAATATCTCATGATGTTGTGAGTCTAAAATGACTCAAATTTTCTGTTGCTTTTACTTTTTGCAATAGAATCATTAACCATTAGAGTTCCTCTGTGTGCTGAATGTTGCAAACATGAGTCTTTGAGTATGCATGCAGAAAAAAAGTATGTGAATCTTGTGGTTAATGTCTAATTACATTAGTTACTTATCCCAAAAAAACATTAGTTCACTTATCTGGAGGTTTCATGCATTGGTTTCAGTTCTCTCTCCAAAGCACGTCTCTTCCATGGAGCACGTTCTACCTTTATGGATGACCTCATGGAACTTAAAGGGTGGTGATTCTCTATACAAGCAAGTACGTTTAGGTGTCAGAGTTTCTTCACTTGACAGCCTTGCTATGTGAGTTCTCATGTTTCTTATTACTAATTTGCATCCATATCTGTTGAATGTCATAGTAGCAGAGAAGAAACAATAATTTCTTCTTCTTTACTTGTTAACAATTGAATTTGCTTCTTATTAAGACCGAAGATATACAAACAGTATAGAGTGTTGTAATCTAGAGATCATAAAATTTATATATTTGAAGTAGGAAAAGGAAAACTCCTTTTCAGTTTTCTTCTAGACATTTCCTTCTTTATTAAAAAAATCCATAAGATTAATATTGTTTCTTTCCTTAAATTCCCTTTCCTTTTATTTTGCATTTGATAAGGCTTATTGATATCACTCATGACCATGTAATGTTGAAATGCAAATGAAAATCTTGTAATGTTAATTAGCCAGCATCAAATAGCATGTTCCGTTAAATGGTACCTTGATATGCTTCCTAAGCTCAAGCTTTATGGTTAATGTATTTTTCTCTGAAGTGGCTCCCTAATGCACTTTCAATACTGCTCCTAGATTGTTAAAAAGCAGTGTGTTGAATGTTTGGGCAGTTGAGTAACAAATTGTCTTTGATGGATAGGGTTGACCTATTACAATCTGCTGGATCACATTACAAGAAAGGTTGATAGATATATTCACCGTTTTTTTCAAGCTAAACTACTTGAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTG</genome_strand>
        <mrna_strand>TTGTCTTTCGCTGAATACTCTGAACTGTGAAAGATGCTCCATTGTTTTATCACATTTCGTCAAGACAGGTCAAG.....................................................................................................................................................................................................................................................................................................................................TTCTCTCTCCAAAGCACGTCTCTTCCATGGAGCACGTTCTACCTTTATGGATGACCTCATGGAACTTAAAGGGTGGTGATTCTCTATACAAGCAAGTACGTTTAGGTGTCAGAGTTTCTTCACTTGACAGCCTTGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGACCTATTACAATCTGCTGGATCACATTACAAGAAAG..................................................................................AGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349789" ref_strand="+" ref_description="SGN-E349789 [cTOS-3-D22]">
      <seq>gagctgagaattctgcttatattctctttcatctttctagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgctttcaaattacgacttggggtgatttcaagtcatcattcagtatgtcttggatcttccaatgatcattgagaaggtaaaagtttagcccagcctatacatgttgtgttcaaaggaatagcattctacgatcttggagaaactcttgtttattggaattttaagtaggtcctggataatcttgaaatcaaagttgtaatgtattggcctttaatatatgttatgtaggtcaaattccaagtagggcttgatgcctgtatagatttgtctttgttagaaggggaaaatctagagatgtttggtacttttgaatgctcccttgggacaagtgatgtacactanggttgtacaagtattttatcacctattgtcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84659" stop="86719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84959" g_stop="85186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85902" g_stop="86422" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="749" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E349789" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84959" e_stop="85186"/>
          <exon e_start="85902" e_stop="86422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGCTCCCTTGGGACAAGTGATGTACACTAGGGTTGTACAAGTATTTTATCACCTATTGTCACAACTC</genome_strand>
        <mrna_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGCTCCCTTGGGACAAGTGATGTACACTANGGTTGTACAAGTATTTTATCACCTATTGTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352592" ref_strand="+" ref_description="SGN-E352592 [cTOS-9-F24]">
      <seq>gagctgagaattctgcttatattctctttcatctttctagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgctttcaaattacgacttggggtgatttcaagtcatcattcagtatgtcttggatcttccaatgatcattgagaaggtaaaagtttagcccagcctatacatgttgtgttcaaaggaatagcattctacgatcttggagaaactcttgtttattggaattttaagtaggtcctggataatcttgaaatcaaagttgtaatgtattggcctttaatatatgttatgtangtcaaattccaagtagggcttgatgcctgtatagatttgtctttgttagaaggggaaaatctagagatgtttggtacttttgaatgctccccttgggacagtgatgtacactagggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84659" stop="86691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84959" g_stop="85186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85902" g_stop="86391" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="718" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E352592" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84959" e_stop="85186"/>
          <exon e_start="85902" e_stop="86391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGCT-CCCTTGGGACAAGTGATGTACACTAGGGTTGT</genome_strand>
        <mrna_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTANGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGCTCCCCTTGGGAC-AGTGATGTACACTAGGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351368" ref_strand="+" ref_description="SGN-E351368 [cTOS-12-E8]">
      <seq>gagctgagaattctgcttatattctctttcatctttctagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgctttcaaattacgacttggggtgatttcaagtcatcattcagtatgtcttggatcttccaatgatcattgagaaggtaaaagtttagcccagcctatacatgttgtgttcaaaggaatagcattctacgatcttggagaaactcttgtttattggaattttaagtaggtcctggataatcttgaaatcaaagttgtaatgtattggcctttaatatatgttatgtaggtcaaattccaagtagggcttgatgcctgtatagatttgtctttgttagaaggggaaatctagagatggttggtacttttgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84659" stop="86658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84959" g_stop="85186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85902" g_stop="86358" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="684" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E351368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84959" e_stop="85186"/>
          <exon e_start="85902" e_stop="86358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGC</genome_strand>
        <mrna_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGG-AAATCTAGAGATGGTTGGTACTTTTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352988" ref_strand="+" ref_description="SGN-E352988 [cTOS-14-C4]">
      <seq>gagctgagaattctgcttatattctctttcatctttctagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgcntttcaattacgacttggggtgatttcaagtcatcattcagtatgtcttgggatcttccaatgatcattgagaaggtaaaagtttagcccagcctatacatgttgtgttcaaaggaatagcattctacgatcttggagaaactctttgttattggaattttaagtaggtcctggaatatcttgaaatcaaagttgtaatgtattgggcttaatatatgttatgtaggtcaaattcaagtagggcttgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84659" stop="86599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84959" g_stop="85186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85902" g_stop="86299" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="625" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E352988" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84959" e_stop="85186"/>
          <exon e_start="85902" e_stop="86299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTT-GGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCT</genome_strand>
        <mrna_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCNTTTCAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTTGTTATTGGAATTTTAAGTAGGTCCTGGAATATCTTGAAATCAAAGTTGTAATGTATTGGGC-TTAATATATGTTATGTAGGTCAAATT-CAAGTAGGGCTTGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353417" ref_strand="+" ref_description="SGN-E353417 [cTOS-15-D20]">
      <seq>gagctgagaattctgcttatattctctttcatctttctagagaaatatttacttcaacaaaaagggggtattatcaggattattactcataaggattcagcaggagctgatatattacaatcattcatccatgctcttgtcatggcaaaactagatgatcaagatggatccatgtcttcggaaagccaatcatggatggataagcattatgaagtctttgttttgaagcttcagtcatcaggatggaagactgaacgtctactatcatcatcagtcgtttggagagcaaattggctggtagattattcagatggcaaacatgactagtctacttcaatacaaactaaaagtcatctagttacagtcagatgctttcaaattacgacttggggtgatttcaagtcatcattcagtatgtcttggatcttccaatgatcattgagaaggtaaaagtttagcccagcctatacatgttgtgttcaaaggaatagcattctacgatcttggagaaactcttgtttattggaaattttagtangtcctggataatcttgaaatcaaagttgtaatgtattggcctttaatatatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84659" stop="86567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84959" g_stop="85186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85902" g_stop="86267" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="594" r_length="366" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-E353417" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84959" e_stop="85186"/>
          <exon e_start="85902" e_stop="86267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAGGTATTTGTCTACACCAGAAGCTCCTTTTAGAGAGAAGATCTCATTATATATTCATTGTTTTTACAAATTACAATTACTGAAGCATAGCCAACTACCAATTTTTTTTTTGAAAAAATCAGTTAATCAATATTTTGAAGCAAATACCACCTAATAGGTTGATGTTCCATTATGTGTCATCACAAAACAGTTCATATGCTAAAATTTGTATCTGAAAAGTGAAGTTGGCAAATGGTGGGAGGTATCCCGTGGAATTAGTCGAGGTGCACACAAGTTGGCCCGGACACCACTCTTATCAAAAAGAAAAAAAATGTGAAAGCTGGCGAATGGTGTAGAAGAGGAGAAGTGCAAATGCCGATAAGAAGTCAAACCACATTTTTTTGTGATAGTGATGTTTTGGGCCAGCTTATGCACACCTCATCTTCTCCTCAGAGTACCTATTACCTCTCACCAGCACAGGTACCGGGTTACTTTGCCCCTCAAGATTTAGGCAGATTGGAAGAGATCACCTTCTGTTTTTTGCTTCCACTGAAATTTGAACATGAGATCTCAGGGTTCTCTTCTCACTTCATTGACCATATGGATGCACCCTTGGGTGCAGAAGTCACCCACATATAAGTCAATTTTGTCATGCCAAATTTCCCGTAACTTGCTAGCTGTGCAGTTTCTGTTTTTAGATTGAGCTAAGTATCGTGTTTCTTTCACAATTCTGTCACAGCTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTAT</genome_strand>
        <mrna_strand>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAAATTTTAGTANGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317174" ref_strand="+" ref_description="SGN-E317174 [cTOA-28-E7]">
      <seq>ttttttcaataaatatttataagagaactaataaaaatacaaaaacgtaaattattaatttcgtctccaaattataaataaacacctcatgttttaaaaatgaatttaggagtttatttcccttgtcaaaaaattcaagactttaattcccttaatacatttaattaaaaggactatttgatctattctgaagccaccggtgaactaagcagccgccgttattagcacatacagatcggaaaaacactccggtcattgccatcttgatggaaatgctgatgctgtggagttttgtccacacgaatcgtttcacaatgttctggcagcatgtacttatactttacaagaaggagatcaacctagtagaactggtagtatatccctgtttgatgttgatgctaattcgagtcgccttagtttgatacatagagtacaaacagctggtatatttgatataagatggagcccgatcggtggaattgtggggccattactggctcaagctgatgctganggttatgttagagttcacaaacttgaatcttgtttggatgaatcacaagttcctggtatgtttaagcatctcttgtcgtgttttatgttatatttatcgtcaaaagacaagtgttacatgagggnagaacagcctaatttagtttttttatggtctttgaaaaccnagtatgcagtatctggaatgaaatgagtctagtgttgagaaatgcatctagtctaacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90629" stop="87961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90329" g_stop="90079" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90078" i_stop="88753" i_length="1326">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88752" g_stop="88260" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="743" r_length="492" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E317174" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90329" e_stop="90079"/>
          <exon e_start="88752" e_stop="88260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAATAAATATTTATAAGAGAACTAATAAAAATACAAAAACGTAAATTATTAATTTCGTCTCCAAATTATAAATAAACACCTCATGTTTTAAAAATGAATTTAGGAGTTTATTTCCCTTGTCAAAAAATTCAAGACTTTAATTCCCTTAATACATTTAATTAAAAGGACTATTTGATCTATTCTGAAGCCACCGGTGAACTAAGCAGCCGCCGTTATTAGCACATACAGATCGGAAAAACACTCCGGTGAGTCGATGAATTTAGTTTCTAATTTTGCTTTTCTACTGATGAAAAACGCAGTTCAATGAACAATAATCCGGTTTTACAACTGAAAAATTCCAGTTTTCAATTCGATTTCTCATTTTTAGTAGTAAAGGTTCAAACTTTTGTGAGTGAATTCAAAATCTGATCCAAAATCTATGGCCAAAAGCTAACTAAGTGATAGTTCACAACATGTTCGACAAAATGTCTAACTGAACTTGATGTTTTTCTATTCACTAGTTTCTGGTACGCGCCGCGCGTGTGGCCGTATTAATAAAAATTTTTTTATGAAAGATGGTATATTAACAATATCTTTAAGTTATATTATGTGTTATAAAATAGAAAATATAAATTACATGTTCTTAAAATTGATAGGCATATGGTGTTTTTTTTCTACAATCCAAAATTCAAAAAAAATATACAACTACAATATATAAATGAATAAGTGAAATGTTATGTGCTACGTTAATGAAATATGTGTATAATCAGTAACATATAGAAATCTTTTATAGTAAAATTAATGTTGTGCATTGCACGTATTAAAGCCCTAGCAAGGAAATTAAATAATAAGTGTCATGAGTGTATTATTCACTAAGAAATTTCTTTGACGAATCCAACAACATCCATAGCTGAAATTCTTGCACAAATCCAACAACGTTCATAGAGTATTTTAATAGCTTTTGACTTTGACATTGATTGAGAAAAAACTGTTCAGAGAAATGATATACTCTTCTTTAGAGCCCATAAAAATGGAGAGGGGACTTGAGGAAAATGAAAATTATTCTTGGCTTTATATAATACTTTCAATTTAAATGATTAATTAGTCTCTTTAGCTTCTTTTCATGTATTTATCATTAAAAATAACATATATTAATATATCTTTAGCTTCTTTTCATTTATTTATCATTGAAAATAACATATATTAATATATTAACTATGAGATTCATTGTATTGAAATCTACAACTTTTAAGATTCTAGCAATGTAAAGGTAACTACTTCTATATTTTAGTTAATGTACAACTTAAATCTGTACCTATTTGCTCTCATTAACTAACATTTGTCTCTTCATTTTCTTTAATGTTTAGATTATTTAATTTTCATAGCTGTTCAAATATTCTCAATTCATTAATAGTAAAAAAAGTTTACTGCTCAATATTTTTCAAAAATTAAATAATTAAATATGAATTTAACATTTTTATTTAGTATAGACTTAAAATGGTAATTCAACTTTACATCTTGGAGCTTTCCACTTATAATATAAAATATAAAATATGATTATTGCAGTTTATGTTATTCAGATATGGATATAGGTCATTGCCATCTTGATGGAAATGCTGATGCTGTGGAGTTTTGTCCACACGAATCGTTTCACAATGTTCTGGCAGCATGTACTTATACTTTACAAGAAGGAGATCAACCTAGTAGAACTGGTAGTATATCCCTGTTTGATGTTGATGCTAATTCGAGTCGCCTTAGTTTGATACATAGAGTACAAACAGCTGGTATATTTGATATAAGATGGAGCCCGATCGGTGGAATTGTGGGGCCATTACTGGCTCAAGCTGATGCTGAGGGTTATGTTAGAGTTCACAAACTTGAATCTTGTTTGGATGAATCACAAGTTCCTGGTATGTTTAAGCATCTCTTGTCGTGTTTTATGTTATATTTATCGTCAAAGGACAAGTGTTACATGAGGG-AGAACAAGCCTAATTTAGTTTTTTTATGTTCTTTGAAAACCAAGTTATGCAGTATCTGGAATGAAATGAGTCTAGTGTTGAGAAATGCATCTAGTCTAACTTGGAA</genome_strand>
        <mrna_strand>TTTTTTCAATAAATATTTATAAGAGAACTAATAAAAATACAAAAACGTAAATTATTAATTTCGTCTCCAAATTATAAATAAACACCTCATGTTTTAAAAATGAATTTAGGAGTTTATTTCCCTTGTCAAAAAATTCAAGACTTTAATTCCCTTAATACATTTAATTAAAAGGACTATTTGATCTATTCTGAAGCCACCGGTGAACTAAGCAGCCGCCGTTATTAGCACATACAGATCGGAAAAACACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCATCTTGATGGAAATGCTGATGCTGTGGAGTTTTGTCCACACGAATCGTTTCACAATGTTCTGGCAGCATGTACTTATACTTTACAAGAAGGAGATCAACCTAGTAGAACTGGTAGTATATCCCTGTTTGATGTTGATGCTAATTCGAGTCGCCTTAGTTTGATACATAGAGTACAAACAGCTGGTATATTTGATATAAGATGGAGCCCGATCGGTGGAATTGTGGGGCCATTACTGGCTCAAGCTGATGCTGANGGTTATGTTAGAGTTCACAAACTTGAATCTTGTTTGGATGAATCACAAGTTCCTGGTATGTTTAAGCATCTCTTGTCGTGTTTTATGTTATATTTATCGTCAAAAGACAAGTGTTACATGAGGGNAGAAC-AGCCTAATTTAGTTTTTTTATGGTCTTTGAAAACCNAG-TATGCAGTATCTGGAATGAAATGAGTCTAGTGTTGAGAAATGCATCTAGTCTAACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370266" ref_strand="+" ref_description="SGN-E370266 [TUS-28-O18](-)">
      <seq>aggcaaaatttgggactgcggctttccttatagaacttgagaatacgagatcaatcaaggttctcgggaagggcacgttaattggtttgaccataacattctttgctgggatttgcttctctatgttctcgcctgcattcaacctagccacaaatgatcaatggcatactctcaaagatggagttccacacttgactgtctatacagcatttttctacttctcgtgcttttgtttcatcattgccatgaggttgggcccttttggctggacttgtgtgtggctttggtaatggtctccaattcatgggaggtcaagcagctggatacgcagctgcagacgctgttcaggcattgcctcttgtgagtacattttggggggtgatgttgtttggagaatacagaagatcatcaaggaaaacatatacacttcttgcaggcatgttgttaatgtttacagcagctgttgctattctcatggcatcatcagggcatcgcaaatagcgcgatatagcatagttgtaagaatatgttcttctgtacatattatgtttacatttccttgttgtcgcgacccctaaaagtagggagaaataatttaatcggaggaaaaaggaggattgattttagttaactcctctcatttttatgataggtatttgactcaacacagagttacaaaaatgttcatttggcttaatgtattattgaatgtattttcaagtgtgagttcctgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92569" stop="90548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92269" g_stop="92211" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92210" i_stop="92041" i_length="170">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92040" g_stop="91852" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="248" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91851" i_stop="91766" i_length="86">
            <donor d_prob="0.326" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91765" g_stop="91666" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="348" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91665" i_stop="91240" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91239" g_stop="90844" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="744" r_length="396" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E370266" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92269" e_stop="92211"/>
          <exon e_start="92040" e_stop="91852"/>
          <exon e_start="91765" e_stop="91666"/>
          <exon e_start="91239" e_stop="90844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAAATTTGGGACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAGGTTGGAATTTCTCTTCTTATTGCATTTTCGTGCTCACACTTTATCGCTATACTTACCTTTAAGTCTCTAACTAGACTAAGTGTAACAAACAACAACAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGACCATAACATTCTTTGCTGGGATTTGCTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCACCTTCTTGTACTACCCTATACTAAATGCACCCAAGTCATCTTTCACAGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATACGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCCACCAATTATACTTTTACTATACATCAACTACGCCTCATTCTGTTGACTATATGAATCCACTATGACACGAGGAACCTTCCTCCATTATCCAAGTTCATCACCGCTCAGCAAAACTCTTATAACGGAGTCATTTTTCCTAAAAAAATGACGTCTTTCTATTTTTTGGAAACTATTTAACTTTCAACGTCCTATTTTACCAATGACATGACTTTACATACACACAAACATCATCATGACATGATTAAAACCATAAGTTTCCGCAGATCTCTTTCTTTTTTTTCTTAAACTCCGTACTCAGTGAAATAGATTCACATAAGATGTAGCTTAGGGACTAGGGAGTATATGTTATCGGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCTATTCTCATGGCATCATCAGGGCATCGCAAATAGCGCGATATAGCATAGTTGTAAGAATATGTTCTTCTGTACATATTATGTTTACATTTCCTTGTTGTCGCGACCCCTAAAAGTAGGGAGAAATAATTTAATCGGAGGAAAAAGGAGGATTGATTTTAGTTAACTCCTCTCATTTTTATGATAGGTATTTGACTCAACACAGAGTTACAAAAATGTTCATTTGGCTTAATGTATTATTGAATGTATTTTCAAGTGTGAGTTCCTGATAATAATTGT</genome_strand>
        <mrna_strand>AGGCAAAATTTGGGACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAG..........................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGACCATAACATTCTTTGCTGGGATTTGCTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATG......................................................................................AGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATACGCAGCTGCAGACGCTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCTATTCTCATGGCATCATCAGGGCATCGCAAATAGCGCGATATAGCATAGTTGTAAGAATATGTTCTTCTGTACATATTATGTTTACATTTCCTTGTTGTCGCGACCCCTAAAAGTAGGGAGAAATAATTTAATCGGAGGAAAAAGGAGGATTGATTTTAGTTAACTCCTCTCATTTTTATGATAGGTATTTGACTCAACACAGAGTTACAAAAATGTTCATTTGGCTTAATGTATTATTGAATGTATTTTCAAGTGTGAGTTCCTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370810" ref_strand="+" ref_description="SGN-E370810 [TUS-28-P18](-)">
      <seq>gactgcggctttccttatagaacttaagaatacgagatcaatcaaggttctcgggaagggcacgttaattggtttgaccataacattctttgctgggatttgcttctatatgttctcgcctgcattcaacctagccacaaatgatcaatggcatactctcaaagatggagttccacacttgactgtctatacagcatttttctacttctcgtgcttttgtttcatcattgccatgaggttgggcccttttggctggacttgtgtgtggctttggtaatggtctccaattcatgggaggtcaagcagctggatacgcagctgcagacgctgttcaggcattgcctcttgtgagtacattttggggggtgatgttgtttggagaatacagaagatcatcaaggaaaacatatacacttcttgcaggcatgttgttaatgtttacagcagctgttgctattctcatggcatcatcagggcatcgcaaatagcgcgatatagcatagttgtaagaatatgttcttctgtacatattatgtttacatttccttgttgtcgcgacccctaaaagtagggagaaataatttaatcggaggaaaaaggaggattgattttagttaactcctctcatttttatgataggtatttgactcaacacagagatacaaaaatgttcatttggcttaatgatattattgaatgtattttcaagtgtaagttcctgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92556" stop="90548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92256" g_stop="92211" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92210" i_stop="92041" i_length="170">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92040" g_stop="91852" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="235" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91851" i_stop="91766" i_length="86">
            <donor d_prob="0.326" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91765" g_stop="91666" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="335" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91665" i_stop="91240" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91239" g_stop="90844" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="732" r_length="397" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E370810" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92256" e_stop="92211"/>
          <exon e_start="92040" e_stop="91852"/>
          <exon e_start="91765" e_stop="91666"/>
          <exon e_start="91239" e_stop="90844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAGGTTGGAATTTCTCTTCTTATTGCATTTTCGTGCTCACACTTTATCGCTATACTTACCTTTAAGTCTCTAACTAGACTAAGTGTAACAAACAACAACAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGACCATAACATTCTTTGCTGGGATTTGCTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCACCTTCTTGTACTACCCTATACTAAATGCACCCAAGTCATCTTTCACAGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATACGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCCACCAATTATACTTTTACTATACATCAACTACGCCTCATTCTGTTGACTATATGAATCCACTATGACACGAGGAACCTTCCTCCATTATCCAAGTTCATCACCGCTCAGCAAAACTCTTATAACGGAGTCATTTTTCCTAAAAAAATGACGTCTTTCTATTTTTTGGAAACTATTTAACTTTCAACGTCCTATTTTACCAATGACATGACTTTACATACACACAAACATCATCATGACATGATTAAAACCATAAGTTTCCGCAGATCTCTTTCTTTTTTTTCTTAAACTCCGTACTCAGTGAAATAGATTCACATAAGATGTAGCTTAGGGACTAGGGAGTATATGTTATCGGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCTATTCTCATGGCATCATCAGGGCATCGCAAATAGCGCGATATAGCATAGTTGTAAGAATATGTTCTTCTGTACATATTATGTTTACATTTCCTTGTTGTCGCGACCCCTAAAAGTAGGGAGAAATAATTTAATCGGAGGAAAAAGGAGGATTGATTTTAGTTAACTCCTCTCATTTTTATGATAGGTATTTGACTCAACACAGAGTTACAAAAATGTTCATTTGGCTTAATG-TATTATTGAATGTATTTTCAAGTGTGAGTTCCTGATAATAATTGT</genome_strand>
        <mrna_strand>GACTGCGGCTTTCCTTATAGAACTTAAGAATACGAGATCAATCAAG..........................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGACCATAACATTCTTTGCTGGGATTTGCTTCTATATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATG......................................................................................AGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATACGCAGCTGCAGACGCTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCTATTCTCATGGCATCATCAGGGCATCGCAAATAGCGCGATATAGCATAGTTGTAAGAATATGTTCTTCTGTACATATTATGTTTACATTTCCTTGTTGTCGCGACCCCTAAAAGTAGGGAGAAATAATTTAATCGGAGGAAAAAGGAGGATTGATTTTAGTTAACTCCTCTCATTTTTATGATAGGTATTTGACTCAACACAGAGATACAAAAATGTTCATTTGGCTTAATGATATTATTGAATGTATTTTCAAGTGTAAGTTCCTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370267" ref_strand="+" ref_description="SGN-E370267 [TUS-28-O18]">
      <seq>ctatagcttgtatgctattttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctcttggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagcctcgggaacctctcaactcaatatgcttttgctttcgttggtttgtcagtcactgaagttgtctctgccagtattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaaattctgttttctggagttgcatgcttcttggttgccgtttgtttaggctctgctgttcattcgtccaacaacgctgataacaaaaccaagcttgataactattcaaatgactgtaaagacggagtcaggactaatggagttacttccttcaaaccaacaaattttaatcaaggtggtacaaatggtttggaggatggagatgcttctgagaaggcaaaatttgggactgcggctttccttatagaacttgagaatacgagatcaatcaaagttctcgggaagggcacgttaattggtttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="94139" stop="91709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93839" g_stop="93631" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93630" i_stop="93183" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93182" g_stop="93044" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="348" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93043" i_stop="92954" i_length="90">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92953" g_stop="92779" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="523" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92778" i_stop="92437" i_length="342">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92436" g_stop="92393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="567" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92392" i_stop="92309" i_length="84">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92308" g_stop="92211" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="665" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92210" i_stop="92041" i_length="170">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92040" g_stop="92009" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="697" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E370267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93839" e_stop="93631"/>
          <exon e_start="93182" e_stop="93044"/>
          <exon e_start="92953" e_stop="92779"/>
          <exon e_start="92436" e_stop="92393"/>
          <exon e_start="92308" e_stop="92211"/>
          <exon e_start="92040" e_stop="92009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTTCCCTTCAAAGCTAATATACCAGCTGTAGTTTTTAGGATTATGTTTCTTATATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGTCTTGACGTAACTGGTTAAGTTGTTGTCATGTGACTAGGAGATCACCTGTTCGAGCTGTAGAAACAGTCTCTTGCAGAAATGCAGGGCATGACTGCGTACAATAGACCCTTATGGTCTGCCCTTCCCCAGAACCCCGTGCGTAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATGTATACAGGCACCTTTTTGACACGATAAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCGAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTGCTCCTATTACTTTTTAATAGAGATAGATATGTGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAATTTCTGTTTTCCTGAAGCCAGTACAAGGTGTTGGAAAGATGACATGTGCTATTCCTTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAACTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATTCTATCATACTTGCCTTTAATTCCTACAATGTTTATGGTTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGATTTCATGTATTAGTGTAGAGCTAGATGACTTGCATGTGATGAACTAAATACAATTCCTCATCTCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAAAGTGCAGGATATAATTATATGTACTAAAATTCTGTCAGGCATATATATACGTCTACGCTGTTATAGAACTTGATCAATAATCGCAGAAAATTCATGTCCAACTTAATTGCACATTTGCAGGACTAATGGAGTTACTTCCTTCAAACCAACAAATTTTAATCAAGGTATTGTGAGCTTGAGCATCCAAAATATGATTCCTATATCTAAAATTGATTTATAACGTTTCACAATACTGAATATCCGATCAGGTGGTACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAGGTTGGAATTTCTCTTCTTATTGCATTTTCGTGCTCACACTTTATCGCTATACTTACCTTTAAGTCTCTAACTAGACTAAGTGTAACAAACAACAACAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGAC</genome_strand>
        <mrna_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAACTATTCAAATGACTGTAAAGACGGAGTCAG......................................................................................................................................................................................................................................................................................................................................................GACTAATGGAGTTACTTCCTTCAAACCAACAAATTTTAATCAAG....................................................................................GTGGTACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAA..........................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370811" ref_strand="+" ref_description="SGN-E370811 [TUS-28-P18]">
      <seq>ctatagcttgtatgctattttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcttcttcctcaacatacttatcttgattataccattaccaatctcttggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagcctcgggaacctctcaactcaatatgcttttgctttcgttggtttgtcagtcactgaagttgtctctgccagtattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaaattctgttttctggagttgcatgcttcttggttgccgtttgtttaggctctgctgttcattcgtccaacaacgctgataacaaaaccaagcttgataactattcaaatgactgtaaagacggagtcaggactaatggagttacttccttcaaaccaacaaattttaatcaaggtggtacaaatggtttggaggatggagatgcttctgagaaggcaaaatttgggactgctgctttccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="94139" stop="91939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93839" g_stop="93631" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93630" i_stop="93183" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93182" g_stop="93044" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="348" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93043" i_stop="92954" i_length="90">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92953" g_stop="92779" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="523" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92778" i_stop="92437" i_length="342">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92436" g_stop="92393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="567" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92392" i_stop="92309" i_length="84">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92308" g_stop="92239" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="637" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E370811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93839" e_stop="93631"/>
          <exon e_start="93182" e_stop="93044"/>
          <exon e_start="92953" e_stop="92779"/>
          <exon e_start="92436" e_stop="92393"/>
          <exon e_start="92308" e_stop="92239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTTCCCTTCAAAGCTAATATACCAGCTGTAGTTTTTAGGATTATGTTTCTTATATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGTCTTGACGTAACTGGTTAAGTTGTTGTCATGTGACTAGGAGATCACCTGTTCGAGCTGTAGAAACAGTCTCTTGCAGAAATGCAGGGCATGACTGCGTACAATAGACCCTTATGGTCTGCCCTTCCCCAGAACCCCGTGCGTAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATGTATACAGGCACCTTTTTGACACGATAAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCGAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTGCTCCTATTACTTTTTAATAGAGATAGATATGTGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAATTTCTGTTTTCCTGAAGCCAGTACAAGGTGTTGGAAAGATGACATGTGCTATTCCTTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAACTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATTCTATCATACTTGCCTTTAATTCCTACAATGTTTATGGTTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGATTTCATGTATTAGTGTAGAGCTAGATGACTTGCATGTGATGAACTAAATACAATTCCTCATCTCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAAAGTGCAGGATATAATTATATGTACTAAAATTCTGTCAGGCATATATATACGTCTACGCTGTTATAGAACTTGATCAATAATCGCAGAAAATTCATGTCCAACTTAATTGCACATTTGCAGGACTAATGGAGTTACTTCCTTCAAACCAACAAATTTTAATCAAGGTATTGTGAGCTTGAGCATCCAAAATATGATTCCTATATCTAAAATTGATTTATAACGTTTCACAATACTGAATATCCGATCAGGTGGTACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCGGCTTTCCTTAT</genome_strand>
        <mrna_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCTTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAACTATTCAAATGACTGTAAAGACGGAGTCAG......................................................................................................................................................................................................................................................................................................................................................GACTAATGGAGTTACTTCCTTCAAACCAACAAATTTTAATCAAG....................................................................................GTGGTACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCTGCTTTCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271860" ref_strand="+" ref_description="SGN-E271860 [cLEM-8-L13]">
      <seq>ctatagcttgtatgctattttctttgttattgatagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctcttggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagcctcgggaacctctcaactcaatatgcttttgctttcgttggtttgtcagtcactgaagttgtctctgccagtattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaaattctgttttctggagttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="94139" stop="92584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93839" g_stop="93631" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93630" i_stop="93183" i_length="448">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93182" g_stop="93044" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="348" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93043" i_stop="92954" i_length="90">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92953" g_stop="92884" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="418" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E271860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93839" e_stop="93631"/>
          <exon e_start="93182" e_stop="93044"/>
          <exon e_start="92953" e_stop="92884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTTCCCTTCAAAGCTAATATACCAGCTGTAGTTTTTAGGATTATGTTTCTTATATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGTCTTGACGTAACTGGTTAAGTTGTTGTCATGTGACTAGGAGATCACCTGTTCGAGCTGTAGAAACAGTCTCTTGCAGAAATGCAGGGCATGACTGCGTACAATAGACCCTTATGGTCTGCCCTTCCCCAGAACCCCGTGCGTAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATGTATACAGGCACCTTTTTGACACGATAAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCGAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTGCTCCTATTACTTTTTAATAGAGATAGATATGTGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAATTTCTGTTTTCCTGAAGCCAGTACAAGGTGTTGGAAAGATGACATGTGCTATTCCTTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATG</genome_strand>
        <mrna_strand>CTATAGCTTGTATGCTATTTTCTTTGTTATTGATAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542055" ref_strand="+" ref_description="SGN-E542055 [TUS-63-C17](-)">
      <seq>gaggatggagatgcttctgagaaggcaaaatttgggactgcagctttctttatagaacttgagaatatgagatcaatcagggttctcgggaagggcacgttaattggtttgatcataacattctttgctgggatttgtttctctatgttttcgcctgcgttcaacctagccacaaatgatcaatggcatattctcaaagatggagttccacacttgactgtctatacagcatttttctacttctcgggcttttgtttcatcattgccagggttttgaacctttacttcttgtacccccctatactaaatgcacccaagtcatcgttcacggtttatttcaacgactggaatggcagaggttgggcccttttggctggacttgtgtggggctttggtaatggtctccaattcatgggaggtcaagcagctggatatgcagctgcagacgctgttcaggcattgctttttgggagtacattttggggggtgatgttgtttggagaatccagaagatcttcaaggaaaacatatccactttttgcaggcatgttgttaatgtttacagcagctgttgcagttctcatggcatcgtcagggcatcgcaaatagcgcgatatagcatagctccaagaatatgttcttgtgtacatattatgtgttatctcatgtatttaaattacccagaagaaataaaagatgaaaagaaaaattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102429" stop="100404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102129" g_stop="102049" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102048" i_stop="101840" i_length="209">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101839" g_stop="101465" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="456" r_length="375" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101464" i_stop="100969" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100968" g_stop="100707" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="718" r_length="262" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="749"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E542055" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102129" e_stop="102049"/>
          <exon e_start="101839" e_stop="101465"/>
          <exon e_start="100968" e_stop="100707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATATGAGATCAATCAAGGTCGGAATTTCTCTTCTTATTGCATTTTCATGCTCACACTTTTATCGCTATACTTGCCTATAAGTCTCTAACTAGACTAAGAAGATTCTTGGCAAACACGAATGTAATTTAGGTATAAGTGTAACAAACAACAGCAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCGTTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCAATCAATTATACTTTTACTATACATCAACTGCGCCTCATTTCGTTGACTATATGAATCCACTTTGACATAAGGAACCTTCCTCCGTTATCTAAGTTCATTACCGCTCTGCAAAACTCTTATAATGAAATCTAAAAACTGTTGATGTTAGAGTAATATTCCCTTTGTTCTAGCTGCGATACTATTTCCTTTTCAGTTTTATTCCCCAAAAAAATGTCGTCTTTCTATATTTGGAAACAATTTAACTTCAAACGTCCTATTTTACCCGATGACATGACTTTACAGACACACACAAACCTCATCAGTCATCATGACATGTTTAAGACTTAAAGTTTTCACAGATTTCTTTTTTTTTCTTTCTTAAACTCCGTACTCTAGATTCACATAGCATGTAGCATACGGACTAGGGAGTATATATTATCTGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCGAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTAACCAGAAGAAATAAAAGATGAAAAGAAAAATACAAAGAA</genome_strand>
        <mrna_strand>GAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCAGCTTTCTTTATAGAACTTGAGAATATGAGATCAATCAGG.................................................................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTTTCGCCTGCGTTCAACCTAGCCACAAATGATCAATGGCATATTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGGGCTTTTGTTTCATCATTGCCAGGGTTTTGAACCTTTACTTCTTGTACCCCCCTATACTAAATGCACCCAAGTCATCGTTCACGGTTTATTTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGGGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCTTTTTGGGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATCCAGAAGATCTTCAAGGAAAACATATCCACTTTTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTACCCAGAAGAAATAAAAGATGAAAAGAAAAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221311" ref_strand="+" ref_description="SGN-E221311 [cLEL-22-M2](-)">
      <seq>atttttctacttctcgtgcttttgtttcatcattgccatggttttgaacctctacttcttgtaccaccctatactaaatgcacccaagtcatcgttcacggcttatctcaacgactggaatggcagaggttgggcccttttggctggacttgtgtgtggctttggtaatggtctccaattcatgggaggtcaagcagctggatatgcagctgcagacgctgttcaggcattgcctcttgtgagtacattttggggggtgatgttgtttggagaatacagaagatcatcaaggaaaacatatacacttcttgcaggcatgttgttaatgtttacagcagctgttgcagttctcatggcatcgtcagggcatcgcaaatagcgcgatatagcatagctccaagaatatgttcttgtgtacatattatgtgttatctcatgtatttaaattacccacaagaaataaaagatgaaaagaaaaatacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101990" stop="100404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101690" g_stop="101465" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101464" i_stop="100969" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100968" g_stop="100707" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="488" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="499"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E221311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101690" e_stop="101465"/>
          <exon e_start="100968" e_stop="100707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCAATCAATTATACTTTTACTATACATCAACTGCGCCTCATTTCGTTGACTATATGAATCCACTTTGACATAAGGAACCTTCCTCCGTTATCTAAGTTCATTACCGCTCTGCAAAACTCTTATAATGAAATCTAAAAACTGTTGATGTTAGAGTAATATTCCCTTTGTTCTAGCTGCGATACTATTTCCTTTTCAGTTTTATTCCCCAAAAAAATGTCGTCTTTCTATATTTGGAAACAATTTAACTTCAAACGTCCTATTTTACCCGATGACATGACTTTACAGACACACACAAACCTCATCAGTCATCATGACATGTTTAAGACTTAAAGTTTTCACAGATTTCTTTTTTTTTCTTTCTTAAACTCCGTACTCTAGATTCACATAGCATGTAGCATACGGACTAGGGAGTATATATTATCTGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCGAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTAACCAGAAGAAATAAAAGATGAAAAGAAAAATACAAAGAA</genome_strand>
        <mrna_strand>ATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTACCCACAAGAAATAAAAGATGAAAAGAAAAATACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221201" ref_strand="+" ref_description="SGN-E221201 [cLEL-22-M2](-)">
      <seq>gggcccttttggctggacttgtgtgtggctttggtaatggtctccaattcatgggaggtcaagcagctggatatgcagctgcagacgctgttcaggcattgcctcttgtgagtacattttggggggtgatgttgtttggagaatacagaagatcatcaaggaaaacatatacacttcttgcaggcatgttgttaatgtttacagcagctgttgcagttctcatggcatcgtcagggcatcgcaaatagcgcgatatagcatagctccaagaatatgttcttgtgtacatattatgtgttatctcatgtatttaaattaaccagaagaaataaaagatgaaaagaaaaatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101859" stop="100404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101559" g_stop="101465" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101464" i_stop="100969" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100968" g_stop="100707" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="357" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="368"/>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E221201" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101559" e_stop="101465"/>
          <exon e_start="100968" e_stop="100707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCAATCAATTATACTTTTACTATACATCAACTGCGCCTCATTTCGTTGACTATATGAATCCACTTTGACATAAGGAACCTTCCTCCGTTATCTAAGTTCATTACCGCTCTGCAAAACTCTTATAATGAAATCTAAAAACTGTTGATGTTAGAGTAATATTCCCTTTGTTCTAGCTGCGATACTATTTCCTTTTCAGTTTTATTCCCCAAAAAAATGTCGTCTTTCTATATTTGGAAACAATTTAACTTCAAACGTCCTATTTTACCCGATGACATGACTTTACAGACACACACAAACCTCATCAGTCATCATGACATGTTTAAGACTTAAAGTTTTCACAGATTTCTTTTTTTTTCTTTCTTAAACTCCGTACTCTAGATTCACATAGCATGTAGCATACGGACTAGGGAGTATATATTATCTGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCGAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTAACCAGAAGAAATAAAAGATGAAAAGAAAAATACAAAGAA</genome_strand>
        <mrna_strand>GGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTAACCAGAAGAAATAAAAGATGAAAAGAAAAATCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297934" ref_strand="+" ref_description="SGN-E297934 [cLET-38-D21]">
      <seq>aaaatttgggactgcagctttccttatagaacttgagaatacgagatcaatcaaggttctcgggaagggcacgttaattggtttgatcataacattctttgctgggatttgtttctctatgttctcgcctgcattcaacctagccacaaatgatcaatggcatactctcaaagatggagttccacacttgactgtctatacagcatttttctacttctcgtgcttttgtttcatcattgccatggttttgaacctctacttcttgtaccaccctatactaaatgcacccaagtcatcgttcacggcttatctcaacgactggaatggcagaggttgggcccttttggctggacttgtgtgtggctttggtaatggtctccaattcatgggaggtcaagcagctggatatgcagctgcagacgctgttcaggcattgcctcttgtgagtacattttggggggtgatgttgtttggagaatacagaagatcatcaaggaaaacatatacacttcttgcaggcatgttgttaatgtttacagcagctgttgcagttctcatggcatcgtcagggcatcgcaaatagcgcgatatagcatacctccaagaatatgttcttgtgtacatattatgtgttatctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102403" stop="100457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102103" g_stop="102049" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102048" i_stop="101840" i_length="209">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101839" g_stop="101465" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="430" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101464" i_stop="100969" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100968" g_stop="100757" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="642" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E297934" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102103" e_stop="102049"/>
          <exon e_start="101839" e_stop="101465"/>
          <exon e_start="100968" e_stop="100757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATATGAGATCAATCAAGGTCGGAATTTCTCTTCTTATTGCATTTTCATGCTCACACTTTTATCGCTATACTTGCCTATAAGTCTCTAACTAGACTAAGAAGATTCTTGGCAAACACGAATGTAATTTAGGTATAAGTGTAACAAACAACAGCAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCGTTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAGGTTCGTGCATTTATCAATCAATTATACTTTTACTATACATCAACTGCGCCTCATTTCGTTGACTATATGAATCCACTTTGACATAAGGAACCTTCCTCCGTTATCTAAGTTCATTACCGCTCTGCAAAACTCTTATAATGAAATCTAAAAACTGTTGATGTTAGAGTAATATTCCCTTTGTTCTAGCTGCGATACTATTTCCTTTTCAGTTTTATTCCCCAAAAAAATGTCGTCTTTCTATATTTGGAAACAATTTAACTTCAAACGTCCTATTTTACCCGATGACATGACTTTACAGACACACACAAACCTCATCAGTCATCATGACATGTTTAAGACTTAAAGTTTTCACAGATTTCTTTTTTTTTCTTTCTTAAACTCCGTACTCTAGATTCACATAGCATGTAGCATACGGACTAGGGAGTATATATTATCTGATTGATTACTCGTATATCATTCTATGTATATTCATTTGAAATATGTGTCGAAATTTCAGGCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATG</genome_strand>
        <mrna_strand>AAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAG.................................................................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATACCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726346" ref_strand="+" ref_description="SGN-E726346 [LA11CC03]">
      <seq>atggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttgggaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgtttgtttaggctctgccgttcattcgtccaacaacgctgataacaaaaccaagcttgataattattcaaatgactgtaaagacggagtcaggactgatggagttacttccttcaaacctacagattttaatcaaggtggcacaaatggtttggaggatggagatgcttctgagaaggcaaaatttgggactgcagctttccttatagaacttgagaatacgagatcaatcaaggttctcgggaagggcacgttaattggtttgatcataacattctttgctgggatttgtttctctatgttctcgcctgcattcaacctagccacaaatgatcaatggcatactctcaaagatggagttccacacttgactgtctatacagcatttttctacttctcgtgcttttgtttcatcattgccatggttttgaacctctacttcttgtaccaccctatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103934" stop="101316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103634" g_stop="103466" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="308" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102786" g_stop="102612" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="483" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102611" i_stop="102275" i_length="337">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102274" g_stop="102231" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="527" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102230" i_stop="102147" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102146" g_stop="102049" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="625" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102048" i_stop="101840" i_length="209">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101839" g_stop="101616" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="849" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E726346" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103634" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102612"/>
          <exon e_start="102274" e_stop="102231"/>
          <exon e_start="102146" e_stop="102049"/>
          <exon e_start="101839" e_stop="101616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATGCTATACTTCCCTTGTCAATTCCTACAATGTTTATGGTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGATTTCATGTATACGCGTTGAGTTAGATGACTTGCATGTGATGAACTGATACAATTCCTCATCTCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAGTGCAGGATATAATTGTATGTACTAAAATTCGGTCAGGCATATTGACGCGTCTACGCTGTTATAGAACTTGATCAATAATCGCAGAAAATTGATGTCCAACTTAATTGCACATTTGCAGGACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAGGTATTGTGAGCTTGAGCATCTAAAATATGATTCCTATATCTTAGATTAATTTATAACGTTTCGCAATACTGAATATCCGATCAGGTGGCACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATATGAGATCAATCAAGGTCGGAATTTCTCTTCTTATTGCATTTTCATGCTCACACTTTTATCGCTATACTTGCCTATAAGTCTCTAACTAGACTAAGAAGATTCTTGGCAAACACGAATGTAATTTAGGTATAAGTGTAACAAACAACAGCAGAATAACTTACTAATGTTTTTGTGAAGCATATTGTAGTTACATCCTAATTGTTAAATTCGTGTATGTTTACAGGTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCGTTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACT</genome_strand>
        <mrna_strand>ATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCCGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAG.................................................................................................................................................................................................................................................................................................................................................GACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAG....................................................................................GTGGCACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAG.................................................................................................................................................................................................................GTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542057" ref_strand="+" ref_description="SGN-E542057 [TUS-63-C17]">
      <seq>attcttcaaaaagattcaaattttggtgtgcattttgaagttcccattgttgttaaaagtggtgttcttgataattttttgggtgggggtcctttaataggattattggatccttaccaaggtggcagttctttcaccacaaagggtcttatctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttgggaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgtttgtttaggctctgctgttcattcgtccaacaacgctgataacaaaaccaagcttgataattattcaaatgactgtaaagacggagtcaggactgatggagttacttccttcaaacctacagattttaatcaaggtggcacaaatggtttggaagatggagatgcttctgagaangcaaaatttgggactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104984" stop="101789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104684" g_stop="104585" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="403" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="542" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102612" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="717" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102611" i_stop="102275" i_length="337">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102274" g_stop="102231" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="761" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102230" i_stop="102147" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102146" g_stop="102089" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="819" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E542057" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104684" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102612"/>
          <exon e_start="102274" e_stop="102231"/>
          <exon e_start="102146" e_stop="102089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCAAAAAGATTCAAATTTTGGTGTGCATTTTGAAGTTCCCATTGTTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATGCTATACTTCCCTTGTCAATTCCTACAATGTTTATGGTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGATTTCATGTATACGCGTTGAGTTAGATGACTTGCATGTGATGAACTGATACAATTCCTCATCTCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAGTGCAGGATATAATTGTATGTACTAAAATTCGGTCAGGCATATTGACGCGTCTACGCTGTTATAGAACTTGATCAATAATCGCAGAAAATTGATGTCCAACTTAATTGCACATTTGCAGGACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAGGTATTGTGAGCTTGAGCATCTAAAATATGATTCCTATATCTTAGATTAATTTATAACGTTTCGCAATACTGAATATCCGATCAGGTGGCACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGC</genome_strand>
        <mrna_strand>ATTCTTCAAAAAGATTCAAATTTTGGTGTGCATTTTGAAGTTCCCATTGTTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAG.................................................................................................................................................................................................................................................................................................................................................GACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAG....................................................................................GTGGCACAAATGGTTTGGAAGATGGAGATGCTTCTGAGAANGCAAAATTTGGGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332764" ref_strand="+" ref_description="SGN-E332764 [cTOD-18-O20]">
      <seq>ttaaaagtggtgttcttgataattttttgggtgggggtcctttaataggattattggatccttaccaaggtggcagttctttcaccacaaagggtcttatctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttgggaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgtttgtttaggctctgctgttcattcgtccaacaacgctgataacnaaaccaagcttgataattattcaaatgactgtaaagacngagtcaggactgatggagttacttcccttcaacctacagattttaatcaaggtggcacaaatggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104932" stop="101830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104632" g_stop="104585" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="351" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="490" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102612" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="665" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102611" i_stop="102275" i_length="337">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102274" g_stop="102231" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="709" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102230" i_stop="102147" i_length="84">
            <donor d_prob="0.980" d_score="0.93"/>
            <acceptor a_prob="0.906" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102146" g_stop="102130" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="726" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E332764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104632" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102612"/>
          <exon e_start="102274" e_stop="102231"/>
          <exon e_start="102146" e_stop="102130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATGCTATACTTCCCTTGTCAATTCCTACAATGTTTATGGTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGATTTCATGTATACGCGTTGAGTTAGATGACTTGCATGTGATGAACTGATACAATTCCTCATCTCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAGTGCAGGATATAATTGTATGTACTAAAATTCGGTCAGGCATATTGACGCGTCTACGCTGTTATAGAACTTGATCAATAATCGCAGAAAATTGATGTCCAACTTAATTGCACATTTGCAGGACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAGGTATTGTGAGCTTGAGCATCTAAAATATGATTCCTATATCTTAGATTAATTTATAACGTTTCGCAATACTGAATATCCGATCAGGTGGCACAAATGGTTTG</genome_strand>
        <mrna_strand>TTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACNAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACNGAGTCAG.................................................................................................................................................................................................................................................................................................................................................GACTGATGGAGTTACTTCCCTTCAACCTACAGATTTTAATCAAG....................................................................................GTGGCACAAATGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362720" ref_strand="+" ref_description="SGN-E362720 [cLPP-1-L5]">
      <seq>ttgataatttttttggtgggggtcctttaataggattattggatccttaccaagttggcagttctttcaccagaaagggtcttgtctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttacttgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttggaaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaattttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgtttttttgggctctgctgttcattcgtccaacaacgctgataacaaaaccaagcttgataattattcaaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104917" stop="102328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104617" g_stop="104585" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="336" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="475" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102628" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="634" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E362720" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104617" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACT</genome_strand>
        <mrna_strand>TTGATAATTTTTTTGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGTTGGCAGTTCTTTCACCAGAAAGGGTCTTGTCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTTGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGAAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAATTTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTTTTTGGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364926" ref_strand="+" ref_description="SGN-E364926 [cLPP-17-I7]">
      <seq>ttgtgttaaaagtggtgttcttgataatttttttggtgggggtcctttaataggattattggatccttaccaagttggcagttctttcaccagaaagggtcttgtctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttacttgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttggaaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaatcttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgattttttgggctctgctgttcattcgtgcaacaacgctgataacaaaaccaagcttgataattattcaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104938" stop="102329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104638" g_stop="104585" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="356" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="495" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102629" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="653" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E364926" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104638" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGAC</genome_strand>
        <mrna_strand>TTGT-GTTAAAAGTGGTGTTCTTGATAATTTTTTTGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGTTGGCAGTTCTTTCACCAGAAAGGGTCTTGTCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTTGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGAAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAATCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGATTTTTTGGGCTCTGCTGTTCATTCGTGCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333701" ref_strand="+" ref_description="SGN-E333701 [cTOD-22-G7]">
      <seq>ttaaaagtggtgttcttgataattttttgggtgggggtcctttaataggattattggatccttaccaaggtggcagttctttcaccacaaagggtcttatctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttgggaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaaccttgaattattaccttgacgancaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttggttgccgtttgtttaggctctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104932" stop="102385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104632" g_stop="104585" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="351" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="490" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102685" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="592" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E333701" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104632" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTG</genome_strand>
        <mrna_strand>TTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGANCAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329915" ref_strand="+" ref_description="SGN-E329915 [cTOD-5-I5]">
      <seq>ttgttaaaagtggtgttcttgataattttttgggtgggggtcctttaataggattattggatccttaccaaggtggcagttctttcaccacaaagggtcttatctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttactcgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaggataattggcccagtgtcttgtttgcaatggctggagggatggtcctcagccttgggaacctctcaactcaatatgcttttgctttcgctggtttgtcagtcaccgtagttgtctcttccagcattacagttgttataggaacaaccttgaattattaccttgacgacaaaattaacaaagctgaagttctgtttcctggagttgcatgcttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104935" stop="102410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104635" g_stop="104585" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="354" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102877" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="493" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102786" g_stop="102710" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="570" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E329915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104635" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102877"/>
          <exon e_start="102786" e_stop="102710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTG</genome_strand>
        <mrna_strand>TTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG..........................................................................................GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359735" ref_strand="+" ref_description="SGN-E359735 [cLPP-5-O16]">
      <seq>ttcttgataatttttttggtgggggtcctttaatacgattattggatccttaccaagttggcagttctttcaccagaaagggtcttgtctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttaaggacatggccagctctattgactttacttgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatgattgctttaaccataagtcagtttgggccaagcacaccataaaagcctaattgtctcactcaactctctcaggataattggcccactgtcttgtttgctatggctggaaggatggtcctcagccttggaaacctctcaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104920" stop="102642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104620" g_stop="104585" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="339" r_length="303" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103015" g_stop="102942" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="413" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E359735" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104620" e_stop="104585"/>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATA</genome_strand>
        <mrna_strand>TTCTTGATAATTTTTTTGGTGGGGGTCCTTTAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGTTGGCAGTTCTTTCACCAGAAAGGGTCTTGTCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAAGGACATGGCCAGCTCTATTGACTTTACTTGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATGATTGCTTTAACCATAAGTCAGTTTGGGCCAAGCACACCATAAAAGCCTAATTGTCTCACTCAACTCTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCACTGTCTTGTTTGCTATGGCTGGAAGGATGGTCCTCAGCCTTGGAAACCTCTCAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362364" ref_strand="+" ref_description="SGN-E362364 [cLPP-10-F11]">
      <seq>atttttttggtgtgggtcctttaataggattattggatccttaccaagatggcagttctttcaccagaaagggtcttgtctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttacttgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataggttagtttgggccaagcacaccataaaggcctaattttctcactcaactctttcaggataattggcccagtgtcttgtttgcaattggctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104079" stop="92846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="330" r_length="303" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103015" g_stop="102979" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="368" r_length="38" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E362364" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAA-TGGCTGGAG</genome_strand>
        <mrna_strand>GATTATTGGATCCTTACCAAGATGGCAGTTCTTTCACCAGAAAGGGTCTTGTCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTTGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTTAGTTTGGGCCAAGCACACCATAAAGGCCTAATTTTCTCACTCAACTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATTGGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364585" ref_strand="+" ref_description="SGN-E364585 [cLPP-18-A9]">
      <seq>ttgataatttttttggtgttggtcctttaatacgattattggatgcttaccaagttggcagttctttcaccagaaagggtcttgtctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttacttgaaaggcgaggtcgtcttcctcaacatacttatcttgattataccattaccaatctattggctgctgtcatcattgctttaaccataagtcagtttgggccaagcacaccagaaaggcctaattttctcactcaactctctcaagataattggcccagtgtcttgtttgcaatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104085" stop="92850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103768" g_stop="103466" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="336" r_length="303" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103015" g_stop="102983" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="369" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E364585" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103768" e_stop="103466"/>
          <exon e_start="103015" e_stop="102983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAGGTTAGTGCCCTTCAAAGCCAATATACCAGCTGTAGTTTTGAGGACTATTTTTCTTGTATTTGATTTAATGCATTGTTCAATTGGAAAATGGTTAAGGGGAGCCTTGACGTAACTGGTTAAGTTGTTGTCATATGACTAGGAGGTCACATTTTCGAGCTGTGGAAACAGTCTCTTGCAGTAATGCAGGGCAAGACTGGGTATAAATAAACCCTTACGGTCTGCCCTTCCCCAGAACCCCGTGCATAGAGGGAGCTTATTTCACCGGGCTACGATTGGAAAATGGAATATGTACAGGCACCTTTTTGACACGGTGAAATGTAAAAAAAGCAAATTAGATTACTATTCTCTTCCAAGATAGCATATACTTCTGATTGATATGCCGCACTAACTTGTACTCCTATTTACTTTTTAATAAAGATAGATATAAGCTTTTATCAATGAACATTGCAGGATAATTGGCCCAGTGTCTTGTTTGCAATGGCT</genome_strand>
        <mrna_strand>GATTATTGGATGCTTACCAAGTTGGCAGTTCTTTCACCAGAAAGGGTCTTGTCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTTGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAAGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTGGCCCAGTGTCTTGTTTGCAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297053" ref_strand="+" ref_description="SGN-E297053 [cLEW-7-P9]">
      <seq>ttttggtgttcattttgaacttcccattgttgttaaaagtggtgttcttgatcattttttgggtgggggtcctttaataggattattggatccttaccaaggtggcagttctttcaccacaaagggtcttatctagtggattcaagatgtatatggttgaaagcaaagatggtgctatagtttgtatgctactttctttgttattgttagggacatggccagctctattgactttactctaaaggcgacgtcgtttttctcaacatacttatctggactataccattaccaatctattggctgctgtcatcattgctttaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104964" stop="103225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104664" g_stop="104585" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103768" g_stop="103525" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="324" r_length="244" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E297053" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104664" e_stop="104585"/>
          <exon e_start="103768" e_stop="103525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTGTGCATTTTGAAGTTCCCATTGTTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAGGTTGGTTATCTAATTTTTTCTTTGTAGTGATAAAATAAAAATCAAATCTTTATTCTTTTTTCCTTTATGTTGCTTGTGTTTGCACGTTTGTAGATATTGTTTATTGTTAAAAGATTCAATTTTTTTGGATTATTATAGTAAGTTCTTGATACCCTTTTGTCATGGTGAGTGGTTGTTCTGTTTGAGAGAAGAAAACAATGGATATTTGGTGGCCCAAATGGTGGTTAAGTCCAAAGAAATGTTCACTTTTTTGTGTTTTTTTATTTGTCTTTTTGTTAAAGATTCTTGATACCCTTTTGCAATATGATATGGTGGGTAAATTGGATTTTCATGTTTGACAAGAAAGATTTGATTTTTATGTGGAAATGGGTTGTGAAAGCTATAATTTTGTACTCAATTGTTTCCTTTTTAGATAGAAAATTTCTCTGTTCATACATTTGTTTTCAAGTTTTTAGGGAATTTTGTGAGTAGAGTTTCTTTGTGGTTTCCTAGGATGCAGACAGATATGTATATGACAAACATAAGCTCCCTGTCTATGGGGATGTGGACCCCATGGCAGTGGGGAAGCTGTTTTGCTGATTTTCTCTTCTGTACTTCCATTGATGCAGACAATGAATTTGGGATGTGTTAATCTGTTGTATCAATTTAAAAGATTGAATCTTTAATATTTGTTATGCTTTATTAAGCTGAGGGTCTTATCGGAAACAATCTTTCTATTTCTACGAGGTAGGGGTAAAGTTTGCGTACACTCTAACTTTACACTGGTATGTTGTTGTAATCTTCCTCTTTTTTGTGTCCCTTTTCTTCTTTGGATAGGATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCA</genome_strand>
        <mrna_strand>TTTTGGTGTTCATTTTGAACTTCCCATTGTTGTTAAAAGTGGTGTTCTTGATCATTTTTTGGGTGGGGGTCCTTTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCTAAAGGCGACGTCGTTTTTCTCAACATACTTATCTGGACTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728493" ref_strand="+" ref_description="SGN-E728493 [LA18AA07]">
      <seq>agaaagcaaaaaataaaataaaataatccgccatggatgcgcagcaacagcagagacaacaaggtgttccagctcgcccaaggtccggcgccggcagggatggcggcggagacttcactcctattctcactgtgctcgttgctttcatctccattttcgcattgattgtggctccttctatttcaacattaaataatagtgtatccattttacaccaagtgccggaaggtcatgttggagtctattggagaggaggtgcccttttaaatacaataactgatccaggttttcatttgaaactgccctttataactcagtttgaacccatacaagttactcttcaaacagatctggtgagggatattccttgcggaaccaaaggaggcgtgatgatcaactttgagaaaatagaagttgttaaccgccttcggaaggaccacgtgtacgatactctgctgaattatggggtcaattatgataatacatggatatacgacaagatccaccatgagatcaatcagttctgcagtgctcacagccttcaacaagtttatatcgacatgtttgatcagatcgatgaaaaaatgaaagatgcacttcaggctgactgcacacgatacgctccaggtattgagattctcagtgtacgtattacaaaacccagcatcccagagagcataagacgaaattttgagaacatggaacaggagcgcaccaaggtcttgattgcagtagagagacaaagagttgctgagaaggaagcagagacgcagaaaaagatagcaattagtgaagctgaaagaaatgctcatgttagtaagatccaaatggaacagaagttgatggaaaaagacagtgctaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="116843" stop="112881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116543" g_stop="116380" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.153" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114876" g_stop="114756" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="285" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100">
            <donor d_prob="0.618" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114655" g_stop="114588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="353" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114438" g_stop="114379" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="413" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114299" g_stop="114141" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="572" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113818" g_stop="113672" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="719" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113326" g_stop="113181" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="865" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E728493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116543" e_stop="116380"/>
          <exon e_start="114876" e_stop="114756"/>
          <exon e_start="114655" e_stop="114588"/>
          <exon e_start="114438" e_stop="114379"/>
          <exon e_start="114299" e_stop="114141"/>
          <exon e_start="113818" e_stop="113672"/>
          <exon e_start="113326" e_stop="113181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTGGTGAATCAACTTTTATCCCTAAAAATATCAATATACTGCTTCTAAATTATCTATTGATTTCTCTATGTATGAATTTATTTTTGTTTTGATTATTGATTTGTGTTTAATATGTGGAGTGCATAGTGCTTGATAATTGTGTTTATTACATTAATTTGATTTGTGCACCTGGTGCTTGATCAATAGTGTTAATAGTGTTTGATAATGGCTTTGACTAATATAGAGTAGACTTTTCAGTTTAATCCATTCTATGATTCTCGAAATGCCTTTTTTTAAGCTTAAGTGGATTATCTGCTTAAGTTAAACCAATCTAAGGTCTGTAATAAGAGCATCCGTCGACAAAAGGATCACTTAAAGTGATCATCTCGTGGCTATTGAGAACGAATGAAATCAGATGATTCCATGAAAAATAGGAAAAATGATTTGTTCGCCTTTCTAAGAGGAGCAGGATGTTGGTGATGTAGTGGTTTTGATTGAATTGCTTTTTTAGGGTAAAAGAAAGACTAACTAGATTACAGTGTTTGATATATGAGCTATAGAAGTATTAGAACCTGTTTGGATTGGCTTATTTTAGGTGCTTTAAAGCATTTTTGTAGCATTGGGATGATATGAAAAAGTGGCTTCGCTCTTGTTTTTAAGCTAAAGTAACAAAAACAAGTCAAAAGACAGTTAGGATTCCTAACTTATGGATTATGTTTATAAGCCATGAGCTTATAAGTCCATCCAAACAGGCTCTTAGTAGTGTGGTGTCCAGGGGGTGATGGTGGTCATAAATTGTAACGAGGACCAGGTTTCGAATTCAGTTTTGGGGGGGGGGGGGAATTTGGTGATTTCTTTTGCTTAGCTTGGTGGGTAGAGTTATCCGATACATGATTTGGTGAGGAAAAAACAAGCCATTGCTTAAACTAATCCTTTTTATGTGGAAAGGAAAACTGAAACCAGACATTGTTAATCTTGTATTTGACAGTGTTAAGTTTTATGTGGAGACATTTCTCCACTAATCGCAACCAAACAATCACCTCAGAATAATTGTGATTGTGCTGGTTGTTTTAGACAACCTTTGCGAGCAGGATAATGTTTGCCGCATTAATGCTCAGAACCTAGCACACTTCTCAGTTTTGACGAAGTTCTATATTGTTTTAAATGTTCTAGGATTAGTCGTCGTACTTTTCTAGTGTTTGTCCCAATAACAAGAAAAAGTTTAAGTCGCCTTTCCTGTGGAACTGTTGTTTGATTAATTTTAGATATACTTGTCTTGGGTTTCTCAAAAAAAGATATACTTGTCTTGGGTTTTTACTTGCAATTGCTTGACACTGAAACTCGGCAATAGCCTAATGCTTTAGTATGCAATCTTCAATTTTTGTTGCATCTGTACTGTTGAGTAACTTGATAATAGGACTTGGGTAGAGTAACTGTGACTTACATGTTGGGGATGTGAGTTATTAGAAGTGAGACATCTTTCTTTTTATGGAAGGTATAACCAAGACATCTTAAAATCATTTTCAGATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAGGTGATATGGTGCTTTGTCTAGATGGTCATTTGCATTTTTGTGCGGTGTCTCCTTATTTTGAAGTCTATTGTTGACCAAACATGTATGTTTAAATGTGTAGGTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTGGTAACATTTCCTTTCTATTTTTATATTTGTAAGGTTTTTTATCTCAAAATTTCTGAGATCCTGAGTTTCTAGCAGCATGAGTTTTTAGTAATATAAACCCTGATTAAGAATAGGGTCAATGATGTCTCTGGATCATGTGGTAAATGCAGGTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAAGTAAACTATCTACCTTGTGGGTATTGCGTAATTATATGCAGGAACGCATTGTCATCTTATTTGTTTCATGTGCTTTCAGGTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAGGTAAGAGTCATCTTGGCCACTTATATACTGATGGTCTGCCAGTTTCTGTAGTCAATACTAATGAATCATCCTTTTCTGTTTCTTCTGGTGTTTGTGCTGTTCCATGTGTCTTTAACTGTTTCTGGTTTTACCTGCTCAGTATGTTTTCCGCACTTAGACATGCTCTACTTCCATGCTTAAAAATCCATGATATGCCTTCTAAGGCAAGGAATTATCTGATTATTTACATTCTCCGGGATTCTAAAACAAAAATACAGCAAAGTTAATTTAGACGACATTATTGTTAATAGTATTGACAAGGTGTCTGCCACAACATTTCCAGATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAGGTATTAAGTGGAGAACTCTGCTTCTTTTTGTCTGAACTGAATGATTTGTTTTCCACCATCTGAGAAGTGACGAACTTGTGCCTATCCCCCCCCCCCCCAACCACCACACACAACAGAAAAAAAAAAAAGGAAAAGAAAAAGAAAAAGAAAAACAATCCCCGAGAGCTTTCTGTGTTGTTGTTACTCTTACCCAATCATTATAATAACAGCTATTGAGTACTGACCATCAACGTGTTCTCCAATGTGCCATTATTGCATTGTTAGTTCCTTCTGATGCAGATATTTGGGCTATGATTAACAGTGACTTAATTAGTAATCCATCTGTGCATCAATGATGTGTTACAGGTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAAAAAGACAGTGCTAGGAA</genome_strand>
        <mrna_strand>AGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAG....................................................................................................GTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTG.....................................................................................................................................................GTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAA...............................................................................GTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAG..................................................................................................................................................................................................................................................................................................................................ATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAAAAAGACAGTGCTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726791" ref_strand="+" ref_description="SGN-E726791 [LA12DD01]">
      <seq>cttccgtttaccgagaaaaagataattatttatttgaatttagacaaaaatataaattctattttggagtgctaagaaagcaaaaaataaaataaaataatccgccatggatgcgcagcaacagcagagacaacaaggtgttccagctcgcccaaggtccggcgccggcagggatggcggcggagacttcactcctattctcactgtgctcgttgctttcatctccattttcgcattgattgtggctccttctatttcaacattaaataatagtgtatccattttacaccaagtgccggaaggtcatgttggagtctattggagaggaggtgcccttttaaatacaataactgatccaggttttcatttgaaactgccctttataactcagtttgaacccatacaagttactcttcaaacagatctggtgagggatattccttgcggaaccaaaggaggcgtgatgatcaactttgagaaaatagaagttgttaaccgccttcggaaggaccacgtgtacgatactctgctgaattatggggtcaattatgataatacatggatatacgacaagatccaccatgagatcaatcagttctgcagtgctcacagccttcaacaagtttatatcgacatgtttgatcagatcgatgaaaaaatgaaagatgcacttcaggctgactgcacacgatacgctccaggtattgagattctcagtgtacgtattacaaaacccagcatcccagagagcataagacgaaattttgagaacatggaacaggagcgcaccaaggtcttgattgcagtagagagacaaagagttgctgagaaggaagcagagacgcagaaaaagatagcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="116917" stop="112958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116617" g_stop="116380" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.153" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114876" g_stop="114756" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="359" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100">
            <donor d_prob="0.618" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114655" g_stop="114588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="427" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114438" g_stop="114379" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="487" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114299" g_stop="114141" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="646" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113818" g_stop="113672" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="793" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113326" g_stop="113258" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="862" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-E726791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116617" e_stop="116380"/>
          <exon e_start="114876" e_stop="114756"/>
          <exon e_start="114655" e_stop="114588"/>
          <exon e_start="114438" e_stop="114379"/>
          <exon e_start="114299" e_stop="114141"/>
          <exon e_start="113818" e_stop="113672"/>
          <exon e_start="113326" e_stop="113258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGTTTACCGAGAAAAAGATAATTATTTATTTGAATTTAGACAAAAATATAAATTCTATTTTGGAGTGCTAAGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTGGTGAATCAACTTTTATCCCTAAAAATATCAATATACTGCTTCTAAATTATCTATTGATTTCTCTATGTATGAATTTATTTTTGTTTTGATTATTGATTTGTGTTTAATATGTGGAGTGCATAGTGCTTGATAATTGTGTTTATTACATTAATTTGATTTGTGCACCTGGTGCTTGATCAATAGTGTTAATAGTGTTTGATAATGGCTTTGACTAATATAGAGTAGACTTTTCAGTTTAATCCATTCTATGATTCTCGAAATGCCTTTTTTTAAGCTTAAGTGGATTATCTGCTTAAGTTAAACCAATCTAAGGTCTGTAATAAGAGCATCCGTCGACAAAAGGATCACTTAAAGTGATCATCTCGTGGCTATTGAGAACGAATGAAATCAGATGATTCCATGAAAAATAGGAAAAATGATTTGTTCGCCTTTCTAAGAGGAGCAGGATGTTGGTGATGTAGTGGTTTTGATTGAATTGCTTTTTTAGGGTAAAAGAAAGACTAACTAGATTACAGTGTTTGATATATGAGCTATAGAAGTATTAGAACCTGTTTGGATTGGCTTATTTTAGGTGCTTTAAAGCATTTTTGTAGCATTGGGATGATATGAAAAAGTGGCTTCGCTCTTGTTTTTAAGCTAAAGTAACAAAAACAAGTCAAAAGACAGTTAGGATTCCTAACTTATGGATTATGTTTATAAGCCATGAGCTTATAAGTCCATCCAAACAGGCTCTTAGTAGTGTGGTGTCCAGGGGGTGATGGTGGTCATAAATTGTAACGAGGACCAGGTTTCGAATTCAGTTTTGGGGGGGGGGGGGAATTTGGTGATTTCTTTTGCTTAGCTTGGTGGGTAGAGTTATCCGATACATGATTTGGTGAGGAAAAAACAAGCCATTGCTTAAACTAATCCTTTTTATGTGGAAAGGAAAACTGAAACCAGACATTGTTAATCTTGTATTTGACAGTGTTAAGTTTTATGTGGAGACATTTCTCCACTAATCGCAACCAAACAATCACCTCAGAATAATTGTGATTGTGCTGGTTGTTTTAGACAACCTTTGCGAGCAGGATAATGTTTGCCGCATTAATGCTCAGAACCTAGCACACTTCTCAGTTTTGACGAAGTTCTATATTGTTTTAAATGTTCTAGGATTAGTCGTCGTACTTTTCTAGTGTTTGTCCCAATAACAAGAAAAAGTTTAAGTCGCCTTTCCTGTGGAACTGTTGTTTGATTAATTTTAGATATACTTGTCTTGGGTTTCTCAAAAAAAGATATACTTGTCTTGGGTTTTTACTTGCAATTGCTTGACACTGAAACTCGGCAATAGCCTAATGCTTTAGTATGCAATCTTCAATTTTTGTTGCATCTGTACTGTTGAGTAACTTGATAATAGGACTTGGGTAGAGTAACTGTGACTTACATGTTGGGGATGTGAGTTATTAGAAGTGAGACATCTTTCTTTTTATGGAAGGTATAACCAAGACATCTTAAAATCATTTTCAGATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAGGTGATATGGTGCTTTGTCTAGATGGTCATTTGCATTTTTGTGCGGTGTCTCCTTATTTTGAAGTCTATTGTTGACCAAACATGTATGTTTAAATGTGTAGGTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTGGTAACATTTCCTTTCTATTTTTATATTTGTAAGGTTTTTTATCTCAAAATTTCTGAGATCCTGAGTTTCTAGCAGCATGAGTTTTTAGTAATATAAACCCTGATTAAGAATAGGGTCAATGATGTCTCTGGATCATGTGGTAAATGCAGGTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAAGTAAACTATCTACCTTGTGGGTATTGCGTAATTATATGCAGGAACGCATTGTCATCTTATTTGTTTCATGTGCTTTCAGGTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAGGTAAGAGTCATCTTGGCCACTTATATACTGATGGTCTGCCAGTTTCTGTAGTCAATACTAATGAATCATCCTTTTCTGTTTCTTCTGGTGTTTGTGCTGTTCCATGTGTCTTTAACTGTTTCTGGTTTTACCTGCTCAGTATGTTTTCCGCACTTAGACATGCTCTACTTCCATGCTTAAAAATCCATGATATGCCTTCTAAGGCAAGGAATTATCTGATTATTTACATTCTCCGGGATTCTAAAACAAAAATACAGCAAAGTTAATTTAGACGACATTATTGTTAATAGTATTGACAAGGTGTCTGCCACAACATTTCCAGATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAGGTATTAAGTGGAGAACTCTGCTTCTTTTTGTCTGAACTGAATGATTTGTTTTCCACCATCTGAGAAGTGACGAACTTGTGCCTATCCCCCCCCCCCCCAACCACCACACACAACAGAAAAAAAAAAAAGGAAAAGAAAAAGAAAAAGAAAAACAATCCCCGAGAGCTTTCTGTGTTGTTGTTACTCTTACCCAATCATTATAATAACAGCTATTGAGTACTGACCATCAACGTGTTCTCCAATGTGCCATTATTGCATTGTTAGTTCCTTCTGATGCAGATATTTGGGCTATGATTAACAGTGACTTAATTAGTAATCCATCTGTGCATCAATGATGTGTTACAGGTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATT</genome_strand>
        <mrna_strand>CTTCCGTTTACCGAGAAAAAGATAATTATTTATTTGAATTTAGACAAAAATATAAATTCTATTTTGGAGTGCTAAGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAG....................................................................................................GTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTG.....................................................................................................................................................GTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAA...............................................................................GTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAG..................................................................................................................................................................................................................................................................................................................................ATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>61</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8258" PGL_stop="7810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8258" e_stop="7810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="8258" e_stop="7810" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8258" stop="7937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8258" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8257" stop="7810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGAATGTATATTGCATAATTATAAATGTATAGCAAGAAGATATATATTTTTCTCTCGCTTTATACAAAACAGAAACACAATATATACACTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACATTTGTGTATAAAGCGAGAGAGGCAAGCGAAAACGAAAAGTAGCGAGTGAGATTTTTGGGGGAGAGACGCCTGGCAAACTTTAGCAAACGTTTGCTATGGAGCACAATTAAATCAAAACCTAACTACTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  E  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  F  F  S  R  F  I  Q  N  R  N  T  I  Y  T  L  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  F  I  H  I  C  V  *  S  E  R  G  K  R  K  R  K  V  A  S  E  I  F  G  G  E  T  P  G  K  L  *  Q  T  F  A  M  E  H  N  *  I  K  T  *  L  L  H  L  F  *  V  I   </first_frame>
            <second_frame>  K  M  N  V  Y  C  I  I  I  N  V  *  Q  E  D  I  Y  F  S  L  A  L  Y  K  T  E  T  Q  Y  I  H  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  Y  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  E  K  *  R  V  R  F  L  G  E  R  R  L  A  N  F  S  K  R  L  L  W  S  T  I  K  S  K  P  N  Y  S  I  Y  F  R  L  L  </second_frame>
            <third_frame>   K  *  M  Y  I  A  *  L  *  M  Y  S  K  K  I  Y  I  F  L  S  L  Y  T  K  Q  K  H  N  I  Y  T  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  T  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  Y  T  H  L  C  I  K  R  E  R  Q  A  K  T  K  S  S  E  *  D  F  W  G  R  D  A  W  Q  T  L  A  N  V  C  Y  G  A  Q  L  N  Q  N  L  T  T  P  F  I  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0115G01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9069" PGL_stop="13901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9069" e_stop="9269"/>
            <exon e_start="11498" e_stop="12105"/>
            <exon e_start="13832" e_stop="13901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.980" e_score="0.995"/>
          <exon-intron don_prob="0.967" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9069" e_stop="9269" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9270" i_stop="11497" i_length="2228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11498" e_stop="12105" e_length="608"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12106" i_stop="13831" i_length="1726"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13832" e_stop="13901" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9069" stop="9269"/>
              <exon start="11498" stop="12105"/>
              <exon start="13832" stop="13901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9162" stop="9269"/>
              <exon start="11498" stop="11896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACTTAGATTAAGGTTACGTGGTCTGGGGATTTTGATACTATAATTGATTCATCCTGATTCCTAGGACCCTTTCTTTCTTCTTTTCCCTAATTTAATTTACTGCAAATCTGCACTGTGTAAGACGTGTTTTTGTTCTTGGATTCATTGCTGCAGAGACCCTTTTAAGCCCAAAGGCCTTTTTATGGTTTTCTGGTGAAG : GAGTAGAAGATTTTAACTTAAAAGTAATAAGAACCATAATAAGAAAAGCTACTACAGTTGCTAACACTAACGCTTTGCTAAAAGCAACAGTGCTGCAGTTGGAGTAAGTACTTGGGGCTTTGATCAATGCTGAAATCTTTGTTTCTGAGGTTTGTTCCTAACTCACAGAAAGTGAAAGCAAATGGCAGAAGAAAATGGTCCTTCTGATTTTCCAGAATCTACATCTACTAGGTTTTATTCAGATGTACAGGCAAACAACAACTTTCATGGGTCTGGTCTACCTGGTATTAAGAGGAGAGGCCAAGGTCATGGGAGTCGCTCTTGGATAAAGATTGATGAGCATGGCAATTCAAAAATTTTGGAATTGGATAAGGCTACCGTTATGAGACATTGTTCTTTGCCAGCCAGGGATCTCCGGCTTTTGGACCCTAAGTTTATCTATCCCTCCACAATATTAGGACGAGAGCAAGCTATTGTGGTAAACCTTGAACAGATCAGATGTGTCATCACAGCTGATGAGGTTATACTGATGAATTCTTTGGATGCTTGTGTACTGCAATACGAGTCTGAATTGTGTAAACGCCTTCAGATAAATAGAGATCAGCCGG : ATGGTCTTCCTTTCGAGTTCAGAGCCCTTGAGCTTGTTTTGGAGCTAACTTGCTTGTCTCTTGATGCTCA</gDNA_template>
            <first_frame> T  T  *  I  K  V  T  W  S  G  D  F  D  T  I  I  D  S  S  *  F  L  G  P  F  L  S  S  F  P  *  F  N  L  L  Q  I  C  T  V  *  D  V  F  L  F  L  D  S  L  L  Q  R  P  F  *  A  Q  R  P  F  Y  G  F  L  V  K  :  E  *  K  I  L  T  *  K  *  *  E  P  *  *  E  K  L  L  Q  L  L  T  L  T  L  C  *  K  Q  Q  C  C  S  W  S  K  Y  L  G  L  *  S  M  L  K  S  L  F  L  R  F  V  P  N  S  Q  K  V  K  A  N  G  R  R  K  W  S  F  *  F  S  R  I  Y  I  Y  *  V  L  F  R  C  T  G  K  Q  Q  L  S  W  V  W  S  T  W  Y  *  E  E  R  P  R  S  W  E  S  L  L  D  K  D  *  *  A  W  Q  F  K  N  F  G  I  G  *  G  Y  R  Y  E  T  L  F  F  A  S  Q  G  S  P  A  F  G  P  *  V  Y  L  S  L  H  N  I  R  T  R  A  S  Y  C  G  K  P  *  T  D  Q  M  C  H  H  S  *  *  G  Y  T  D  E  F  F  G  C  L  C  T  A  I  R  V  *  I  V  *  T  P  S  D  K  *  R  S  A  G :   W  S  S  F  R  V  Q  S  P  *  A  C  F  G  A  N  L  L  V  S  *  C  S </first_frame>
            <second_frame>  L  L  R  L  R  L  R  G  L  G  I  L  I  L  *  L  I  H  P  D  S  *  D  P  F  F  L  L  F  P  N  L  I  Y  C  K  S  A  L  C  K  T  C  F  C  S  W  I  H  C  C  R  D  P  F  K  P  K  G  L  F  M  V  F  W  *  R :   S  R  R  F  *  L  K  S  N  K  N  H  N  K  K  S  Y  Y  S  C  *  H  *  R  F  A  K  S  N  S  A  A  V  G  V  S  T  W  G  F  D  Q  C  *  N  L  C  F  *  G  L  F  L  T  H  R  K  *  K  Q  M  A  E  E  N  G  P  S  D  F  P  E  S  T  S  T  R  F  Y  S  D  V  Q  A  N  N  N  F  H  G  S  G  L  P  G  I  K  R  R  G  Q  G  H  G  S  R  S  W  I  K  I  D  E  H  G  N  S  K  I  L  E  L  D  K  A  T  V  M  R  H  C  S  L  P  A  R  D  L  R  L  L  D  P  K  F  I  Y  P  S  T  I  L  G  R  E  Q  A  I  V  V  N  L  E  Q  I  R  C  V  I  T  A  D  E  V  I  L  M  N  S  L  D  A  C  V  L  Q  Y  E  S  E  L  C  K  R  L  Q  I  N  R  D  Q  P   : D  G  L  P  F  E  F  R  A  L  E  L  V  L  E  L  T  C  L  S  L  D  A   </second_frame>
            <third_frame>   Y  L  D  *  G  Y  V  V  W  G  F  *  Y  Y  N  *  F  I  L  I  P  R  T  L  S  F  F  F  S  L  I  *  F  T  A  N  L  H  C  V  R  R  V  F  V  L  G  F  I  A  A  E  T  L  L  S  P  K  A  F  L  W  F  S  G  E   : G  V  E  D  F  N  L  K  V  I  R  T  I  I  R  K  A  T  T  V  A  N  T  N  A  L  L  K  A  T  V  L  Q  L  E  *  V  L  G  A  L  I  N  A  E  I  F  V  S  E  V  C  S  *  L  T  E  S  E  S  K  W  Q  K  K  M  V  L  L  I  F  Q  N  L  H  L  L  G  F  I  Q  M  Y  R  Q  T  T  T  F  M  G  L  V  Y  L  V  L  R  G  E  A  K  V  M  G  V  A  L  G  *  R  L  M  S  M  A  I  Q  K  F  W  N  W  I  R  L  P  L  *  D  I  V  L  C  Q  P  G  I  S  G  F  W  T  L  S  L  S  I  P  P  Q  Y  *  D  E  S  K  L  L  W  *  T  L  N  R  S  D  V  S  S  Q  L  M  R  L  Y  *  *  I  L  W  M  L  V  Y  C  N  T  S  L  N  C  V  N  A  F  R  *  I  E  I  S  R  :  M  V  F  L  S  S  S  E  P  L  S  L  F  W  S  *  L  A  C  L  L  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11673" stop="12105"/>
                    <exon start="13832" stop="13899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQMAEENGPSDFPESTSTRFYSDVQANNNFHGSGLPGIKRRGQGHGSRSWIKIDEHGNSKILELDKATVMRHCSLPARDLRLLDPKFIYPSTILGREQAIVVNLEQIRCVITADEVILMNSLDACVLQYESELCKRLQINRDQPDGLPFEFRALELVLELTCLSLDA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9167" stop="9269"/>
                    <exon start="11498" stop="11604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTANLHCVRRVFVLGFIAAETLLSPKAFLWFSGEGVEDFNLKVIRTIIRKATTVANTNALLKATVLQLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17893" PGL_stop="17067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17893" e_stop="17067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="17893" e_stop="17067" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17893" stop="17067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATCTCTGATTCATAAAAATTTAAAATTTTTGCAGCTAAATCCAGAAGATGAAATAAATGTGGTTCATGGAGACTTGAAACTAGATTGCCTCAATGTGCAGAGCCCTGATTCATCAGGATCAGATAGTGGAACTTGGATTGATCATTCTAAACCTGCCAACCATCCTGTTTCCCCGAGGGAGCTAAGCTCGCGTCTGCATGAGGTGATAGAATCCAGGCTAGAAGCTCGAATTAAGGAGCTCGAAGCAGCCCTTTATCATAGCCAAAATAGAGCTTGTTCATTGGAAACACAACAGAATCTCTCTCAAAAGGCCTGTGCATTGCGCGAATCAGAGTCCTCATGTTGGTATCATGAGGCTGATGAAGAGACCACCAGTATCAGGCATGGAAGTGAAAATGCTTTTGACACTAATACAACAACCCCTCCTTTTGATGGAGGATTGATTGATAGCCCAAACGAAGAACAGGGTGGCCTGGTGCACGAACGTAAGCAGCCTACCTTGATACAATTATTAAAGACAGAATCCATGGCTCTAACCCGTGAGCTACATGTCTCACGGAAACAACATTACCATTGCTCCAAAGTTCCCATTCATTGATAGACCAGATATGATGGGAAAATGATCATATCTATATTATGTTGTCTTCTGTTATTTTTTATGTTACATTGGTATCTTCTTACAACTCTTTTGAGTATAGAGACAGAATGTGCAGTGTACATGTAAAGATTGAAGAATTTTTTATAGATCAATAGACATTAGGGATAGGGTGTTATTCTGTATACTTGAGATGATGTATCATTTGTGCCATGGGGTTCAAGTTTCAA</gDNA_template>
            <first_frame> V  S  L  I  H  K  N  L  K  F  L  Q  L  N  P  E  D  E  I  N  V  V  H  G  D  L  K  L  D  C  L  N  V  Q  S  P  D  S  S  G  S  D  S  G  T  W  I  D  H  S  K  P  A  N  H  P  V  S  P  R  E  L  S  S  R  L  H  E  V  I  E  S  R  L  E  A  R  I  K  E  L  E  A  A  L  Y  H  S  Q  N  R  A  C  S  L  E  T  Q  Q  N  L  S  Q  K  A  C  A  L  R  E  S  E  S  S  C  W  Y  H  E  A  D  E  E  T  T  S  I  R  H  G  S  E  N  A  F  D  T  N  T  T  T  P  P  F  D  G  G  L  I  D  S  P  N  E  E  Q  G  G  L  V  H  E  R  K  Q  P  T  L  I  Q  L  L  K  T  E  S  M  A  L  T  R  E  L  H  V  S  R  K  Q  H  Y  H  C  S  K  V  P  I  H  *  *  T  R  Y  D  G  K  M  I  I  S  I  L  C  C  L  L  L  F  F  M  L  H  W  Y  L  L  T  T  L  L  S  I  E  T  E  C  A  V  Y  M  *  R  L  K  N  F  L  *  I  N  R  H  *  G  *  G  V  I  L  Y  T  *  D  D  V  S  F  V  P  W  G  S  S  F   </first_frame>
            <second_frame>  Y  L  *  F  I  K  I  *  N  F  C  S  *  I  Q  K  M  K  *  M  W  F  M  E  T  *  N  *  I  A  S  M  C  R  A  L  I  H  Q  D  Q  I  V  E  L  G  L  I  I  L  N  L  P  T  I  L  F  P  R  G  S  *  A  R  V  C  M  R  *  *  N  P  G  *  K  L  E  L  R  S  S  K  Q  P  F  I  I  A  K  I  E  L  V  H  W  K  H  N  R  I  S  L  K  R  P  V  H  C  A  N  Q  S  P  H  V  G  I  M  R  L  M  K  R  P  P  V  S  G  M  E  V  K  M  L  L  T  L  I  Q  Q  P  L  L  L  M  E  D  *  L  I  A  Q  T  K  N  R  V  A  W  C  T  N  V  S  S  L  P  *  Y  N  Y  *  R  Q  N  P  W  L  *  P  V  S  Y  M  S  H  G  N  N  I  T  I  A  P  K  F  P  F  I  D  R  P  D  M  M  G  K  *  S  Y  L  Y  Y  V  V  F  C  Y  F  L  C  Y  I  G  I  F  L  Q  L  F  *  V  *  R  Q  N  V  Q  C  T  C  K  D  *  R  I  F  Y  R  S  I  D  I  R  D  R  V  L  F  C  I  L  E  M  M  Y  H  L  C  H  G  V  Q  V  S  </second_frame>
            <third_frame>   I  S  D  S  *  K  F  K  I  F  A  A  K  S  R  R  *  N  K  C  G  S  W  R  L  E  T  R  L  P  Q  C  A  E  P  *  F  I  R  I  R  *  W  N  L  D  *  S  F  *  T  C  Q  P  S  C  F  P  E  G  A  K  L  A  S  A  *  G  D  R  I  Q  A  R  S  S  N  *  G  A  R  S  S  P  L  S  *  P  K  *  S  L  F  I  G  N  T  T  E  S  L  S  K  G  L  C  I  A  R  I  R  V  L  M  L  V  S  *  G  *  *  R  D  H  Q  Y  Q  A  W  K  *  K  C  F  *  H  *  Y  N  N  P  S  F  *  W  R  I  D  *  *  P  K  R  R  T  G  W  P  G  A  R  T  *  A  A  Y  L  D  T  I  I  K  D  R  I  H  G  S  N  P  *  A  T  C  L  T  E  T  T  L  P  L  L  Q  S  S  H  S  L  I  D  Q  I  *  W  E  N  D  H  I  Y  I  M  L  S  S  V  I  F  Y  V  T  L  V  S  S  Y  N  S  F  E  Y  R  D  R  M  C  S  V  H  V  K  I  E  E  F  F  I  D  Q  *  T  L  G  I  G  C  Y  S  V  Y  L  R  *  C  I  I  C  A  M  G  F  K  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17893" stop="17294"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLIHKNLKFLQLNPEDEINVVHGDLKLDCLNVQSPDSSGSDSGTWIDHSKPANHPVSPRELSSRLHEVIESRLEARIKELEAALYHSQNRACSLETQQNLSQKACALRESESSCWYHEADEETTSIRHGSENAFDTNTTTPPFDGGLIDSPNEEQGGLVHERKQPTLIQLLKTESMALTRELHVSRKQHYHCSKVPIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38577" PGL_stop="37921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38577" e_stop="37921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="38577" e_stop="37921" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38577" stop="37921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATATATGTTATATGTTGAAAAGGGCCGATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAAGACGGAATTTTAATTCAAGTTTATATATTTTAGTTGTTGAAATGGCCGATGAAGAAATTACTGTCGATTTCCAAGGCCTCCCATGTTAATAAGACGGATTTTTATTTTAGTTATTATGTGAGTTATTTATTTTTATTTTTATTATTTTGACACTAACTCTTTTACTAAGTGTCTTTACAAGTACCCGGAGGTGCTTCTCCTTGAAATTATTCAAAAAAGTTCGAATTATAATTTCATTCGTTATTTTGTGAATATTGACGTTAAGCAAACATTAGGCCGATAATTTTTTTTTTGTTGTGTATATTGTTTGTTTATTATATGTGTTTATTTTATATTTTTCCTCAATTTGAAAAAAAATTAATTCAGTCGGGAACCACATTTGTTGATTTCGAAGGGTGCCTAACCCTTTCCCTTCAGAATAACCTGAACCCCTTACCTAGAATCAAATTGGTTTCGTAGATAAATAATTGGTTTCCTAGTTTTCCTAAAATTAGGTGACGACTCTTTTTTAAAACTCGTTTATTTTTAAACTTTGTTAAAAATTGAATCAATTAATTATTTTTTGAGTTGTCGTGACGTTT</gDNA_template>
            <first_frame> F  I  Y  V  I  C  *  K  G  P  M  K  N  L  S  V  G  F  R  G  L  P  I  L  K  R  R  N  F  N  S  S  L  Y  I  L  V  V  E  M  A  D  E  E  I  T  V  D  F  Q  G  L  P  C  *  *  D  G  F  L  F  *  L  L  C  E  L  F  I  F  I  F  I  I  L  T  L  T  L  L  L  S  V  F  T  S  T  R  R  C  F  S  L  K  L  F  K  K  V  R  I  I  I  S  F  V  I  L  *  I  L  T  L  S  K  H  *  A  D  N  F  F  F  V  V  Y  I  V  C  L  L  Y  V  F  I  L  Y  F  S  S  I  *  K  K  I  N  S  V  G  N  H  I  C  *  F  R  R  V  P  N  P  F  P  S  E  *  P  E  P  L  T  *  N  Q  I  G  F  V  D  K  *  L  V  S  *  F  S  *  N  *  V  T  T  L  F  *  N  S  F  I  F  K  L  C  *  K  L  N  Q  L  I  I  F  *  V  V  V  T  F </first_frame>
            <second_frame>  L  Y  M  L  Y  V  E  K  G  R  *  K  I  Y  P  S  G  L  E  A  S  P  F  *  K  D  G  I  L  I  Q  V  Y  I  F  *  L  L  K  W  P  M  K  K  L  L  S  I  S  K  A  S  H  V  N  K  T  D  F  Y  F  S  Y  Y  V  S  Y  L  F  L  F  L  L  F  *  H  *  L  F  Y  *  V  S  L  Q  V  P  G  G  A  S  P  *  N  Y  S  K  K  F  E  L  *  F  H  S  L  F  C  E  Y  *  R  *  A  N  I  R  P  I  I  F  F  L  L  C  I  L  F  V  Y  Y  M  C  L  F  Y  I  F  P  Q  F  E  K  K  L  I  Q  S  G  T  T  F  V  D  F  E  G  C  L  T  L  S  L  Q  N  N  L  N  P  L  P  R  I  K  L  V  S  *  I  N  N  W  F  P  S  F  P  K  I  R  *  R  L  F  F  K  T  R  L  F  L  N  F  V  K  N  *  I  N  *  L  F  F  E  L  S  *  R   </second_frame>
            <third_frame>   Y  I  C  Y  M  L  K  R  A  D  E  K  S  I  R  R  V  *  R  P  P  H  F  K  K  T  E  F  *  F  K  F  I  Y  F  S  C  *  N  G  R  *  R  N  Y  C  R  F  P  R  P  P  M  L  I  R  R  I  F  I  L  V  I  M  *  V  I  Y  F  Y  F  Y  Y  F  D  T  N  S  F  T  K  C  L  Y  K  Y  P  E  V  L  L  L  E  I  I  Q  K  S  S  N  Y  N  F  I  R  Y  F  V  N  I  D  V  K  Q  T  L  G  R  *  F  F  F  C  C  V  Y  C  L  F  I  I  C  V  Y  F  I  F  F  L  N  L  K  K  N  *  F  S  R  E  P  H  L  L  I  S  K  G  A  *  P  F  P  F  R  I  T  *  T  P  Y  L  E  S  N  W  F  R  R  *  I  I  G  F  L  V  F  L  K  L  G  D  D  S  F  L  K  L  V  Y  F  *  T  L  L  K  I  E  S  I  N  Y  F  L  S  C  R  D  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38237" stop="38043"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANIRPIIFFLLCILFVYYMCLFYIFPQFEKKLIQSGTTFVDFEGCLTLSLQNNLNPLPRIKLVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46791" PGL_stop="47194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46791" e_stop="47194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="46791" e_stop="47194" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46791" stop="47194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATAATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCATGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGAGATCGGGTGTCACGAACTGACACG</gDNA_template>
            <first_frame> *  *  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  H  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  E  I  G  C  H  E  L  T   </first_frame>
            <second_frame>  D  N  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  M  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  L  T  R  S  I  R  R  S  G  V  T  N  *  H  </second_frame>
            <third_frame>   I  I  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  *  H  V  V  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0115G01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47285" PGL_stop="47766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47285" e_stop="47766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="47285" e_stop="47766" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47285" stop="47522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47286" stop="47766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATAATGAGGGAGCGGAGTGTCACGTACCAACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCTCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTATTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATATTGATTCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGATTCAACAGTAACTCAAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  N  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  A  L  M  C  E  L  D  D  N  C  *  *  Y  S  T  Y  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  D  I  Y  I  D  S  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  F  N  S  N  S  S  Q  S  S  L  H  R  I  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  M  R  E  R  S  V  T  Y  Q  H  K  R  N  K  D  N  E  S  *  K  M  L  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  L  S  C  V  N  L  T  I  I  V  N  D  I  V  L  I  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  I  Y  I  L  I  P  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  H  Y  I  G  S  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  *  *  G  S  G  V  S  R  T  N  T  R  E  I  K  I  M  N  L  E  R  C  Y  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  S  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  *  Y  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  I  Q  Q  *  L  K  P  V  F  T  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47507" stop="47749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTYCCYMLSIIVDFMILLDIYIDSYFELADDIYSVPVFCTDPYFYVFFLFNCGVQQTCRHLRFNSNSSQSSLHRIFRVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="55845" PGL_stop="55242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55845" e_stop="55242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="55845" e_stop="55242" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55845" stop="55242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGGAGAAGGCGTATTTGTTCATGGTTGAGATGGAAAAGTTAGGTATATCACCTGATGTTTTTACTTATACGATACTTATATCTGCCTTCTATAAAGTTAACCGATGGCAGATTGCTGATGGATTGTGGAACCTCATGGTCCGTAAAGGTTGTATGCCTAATGTTGCTACCTTTAATGTTAGAATTCAATTCATGGTAAATATGAGGTTTGCTTGGGAAGCTAATAAATTGTTGCAGTTGATGAAACGTATTGGGATTACTCCAGATGAGGTTACATACAATTTAGTGATCAAAGGCTTTTTCCTAGTAGAGAATCTTCCTATGGCTAAAAGAATCTACTCTGCTTTCCATGGTGCGGGCTTCAAGCCAAATTCTAGAATCTATCAAACCATGATTCATTACCTGTGTAGAGCAGGTGATTTTGATTTGTCATATTCGATGTGTAAAGAAAGCATGGAAAATAATTGGTTCCCAAGTTCGGATATAATTAAAAATATCCTTGAAGGGCTGTGCAAGGATGGAACAGAGGAAAAGATGCGAAACGCTCGATTTTTAGTCATCCTGGCTAAGAAAAAGATACCCCCTTTCTCAACAGAAACTTT</gDNA_template>
            <first_frame> S  W  R  R  R  I  C  S  W  L  R  W  K  S  *  V  Y  H  L  M  F  L  L  I  R  Y  L  Y  L  P  S  I  K  L  T  D  G  R  L  L  M  D  C  G  T  S  W  S  V  K  V  V  C  L  M  L  L  P  L  M  L  E  F  N  S  W  *  I  *  G  L  L  G  K  L  I  N  C  C  S  *  *  N  V  L  G  L  L  Q  M  R  L  H  T  I  *  *  S  K  A  F  S  *  *  R  I  F  L  W  L  K  E  S  T  L  L  S  M  V  R  A  S  S  Q  I  L  E  S  I  K  P  *  F  I  T  C  V  E  Q  V  I  L  I  C  H  I  R  C  V  K  K  A  W  K  I  I  G  S  Q  V  R  I  *  L  K  I  S  L  K  G  C  A  R  M  E  Q  R  K  R  C  E  T  L  D  F  *  S  S  W  L  R  K  R  Y  P  L  S  Q  Q  K  L  </first_frame>
            <second_frame>  L  G  E  G  V  F  V  H  G  *  D  G  K  V  R  Y  I  T  *  C  F  Y  L  Y  D  T  Y  I  C  L  L  *  S  *  P  M  A  D  C  *  W  I  V  E  P  H  G  P  *  R  L  Y  A  *  C  C  Y  L  *  C  *  N  S  I  H  G  K  Y  E  V  C  L  G  S  *  *  I  V  A  V  D  E  T  Y  W  D  Y  S  R  *  G  Y  I  Q  F  S  D  Q  R  L  F  P  S  R  E  S  S  Y  G  *  K  N  L  L  C  F  P  W  C  G  L  Q  A  K  F  *  N  L  S  N  H  D  S  L  P  V  *  S  R  *  F  *  F  V  I  F  D  V  *  R  K  H  G  K  *  L  V  P  K  F  G  Y  N  *  K  Y  P  *  R  A  V  Q  G  W  N  R  G  K  D  A  K  R  S  I  F  S  H  P  G  *  E  K  D  T  P  F  L  N  R  N  F </second_frame>
            <third_frame>   L  E  K  A  Y  L  F  M  V  E  M  E  K  L  G  I  S  P  D  V  F  T  Y  T  I  L  I  S  A  F  Y  K  V  N  R  W  Q  I  A  D  G  L  W  N  L  M  V  R  K  G  C  M  P  N  V  A  T  F  N  V  R  I  Q  F  M  V  N  M  R  F  A  W  E  A  N  K  L  L  Q  L  M  K  R  I  G  I  T  P  D  E  V  T  Y  N  L  V  I  K  G  F  F  L  V  E  N  L  P  M  A  K  R  I  Y  S  A  F  H  G  A  G  F  K  P  N  S  R  I  Y  Q  T  M  I  H  Y  L  C  R  A  G  D  F  D  L  S  Y  S  M  C  K  E  S  M  E  N  N  W  F  P  S  S  D  I  I  K  N  I  L  E  G  L  C  K  D  G  T  E  E  K  M  R  N  A  R  F  L  V  I  L  A  K  K  K  I  P  P  F  S  T  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55843" stop="55244"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKAYLFMVEMEKLGISPDVFTYTILISAFYKVNRWQIADGLWNLMVRKGCMPNVATFNVRIQFMVNMRFAWEANKLLQLMKRIGITPDEVTYNLVIKGFFLVENLPMAKRIYSAFHGAGFKPNSRIYQTMIHYLCRAGDFDLSYSMCKESMENNWFPSSDIIKNILEGLCKDGTEEKMRNARFLVILAKKKIPPFSTET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62107" PGL_stop="57465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62107" e_stop="61924"/>
            <exon e_start="61759" e_stop="61668"/>
            <exon e_start="61517" e_stop="61451"/>
            <exon e_start="61365" e_stop="61243"/>
            <exon e_start="60815" e_stop="60723"/>
            <exon e_start="60566" e_stop="60437"/>
            <exon e_start="60171" e_stop="60090"/>
            <exon e_start="59853" e_stop="59335"/>
            <exon e_start="59245" e_stop="59120"/>
            <exon e_start="58797" e_stop="58488"/>
            <exon e_start="58090" e_stop="57465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.156" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.571" acc_prob="0.656" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62107" e_stop="61924" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61923" i_stop="61760" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61759" e_stop="61668" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61667" i_stop="61518" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61517" e_stop="61451" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61450" i_stop="61366" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61365" e_stop="61243" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61242" i_stop="60816" i_length="427"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60815" e_stop="60723" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.732">
            <gDNA_intron_boundary i_start="60722" i_stop="60567" i_length="156"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60566" e_stop="60437" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.156" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60436" i_stop="60172" i_length="265"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60171" e_stop="60090" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60089" i_stop="59854" i_length="236"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59853" e_stop="59335" e_length="519"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="59334" i_stop="59246" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="59245" e_stop="59120" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.571" acc_prob="0.656">
            <gDNA_intron_boundary i_start="59119" i_stop="58798" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58797" e_stop="58488" e_length="310"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.973">
            <gDNA_intron_boundary i_start="58487" i_stop="58091" i_length="397"/>
          </intron>
          <exon e_serial="11" e_score="0.981">
            <gDNA_exon_boundary e_start="58090" e_stop="57465" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62107" stop="61924"/>
              <exon start="61759" stop="61668"/>
              <exon start="61517" stop="61451"/>
              <exon start="61365" stop="61243"/>
              <exon start="60815" stop="60723"/>
              <exon start="60566" stop="60437"/>
              <exon start="60171" stop="60090"/>
              <exon start="59853" stop="59335"/>
              <exon start="59245" stop="59120"/>
              <exon start="58797" stop="58488"/>
              <exon start="58090" stop="57465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60807" stop="60723"/>
              <exon start="60566" stop="60437"/>
              <exon start="60171" stop="60090"/>
              <exon start="59853" stop="59753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58510" stop="58488"/>
              <exon start="58090" stop="57540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58509" stop="58488"/>
              <exon start="58090" stop="57521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58048" stop="57527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58048" stop="57528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57886" stop="57480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57878" stop="57480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATAAGGTGGATGCAATGAAAACATTCGTTATGTTGTTGCCCATTTTATGGGTTCTAGTTGCTCTTCAAGGGGTAACATCTCATGAAGATCATCCTCTAGCAAGGATTGCTGTTCATAATGCTATTGCTGCTTTGGATGCTCGTGCGTATATCAAAGCATCTCCTTCTGTCCTTGGGTCAAAC : GGCCTAAACCAAGAATGGATAACTCTGGAGTATGGCACAGGCAACCCGTCAAATGATGATTGGGTTGGAGTGTTTTCTCCTGCCAATTTCAG : TGCAGCTACGTGTGACCCTGAAAATAACATGGTGACTCCACCACTTTTGTGTACAGCTCCTATAAAG : TACCAATTTGCAAATCGCTCCAATCCCAACTACAAAAGGACAGGAAAAGGATCGCTAAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCCTTCGCTTTGTTTTCTGGTGGATTACGGAAT : CCAAAGCTGGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAA : ATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTG : GTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGT : ATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGTTTGGACACTCTTAAAATCTGTTTTTGTTTTAGAATAGAGAGCTAAGTGTTTATATCTGTGCATAGATATTTGTACTTTACCGTCTTGAAACTCTGGAAGTTGCTCTCTATTGAGTTTCATGTTCTTCCATTCAGAAGTTACACTTGACAGCGACCTATTATTGCCTTTTTAACGACAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTACGCCAATGGATATCTTTCTCAGTGGGATCAATTTACTTCTCAAGTAGAGCCAATTACTTCAAGAGTACCATACATGATTGCTAG : CGGCAACCATGAACGCGATTGGCCTGATAGTGGGTCATTTTATGGTAAAAAGGATTCAGGTGGAGAGTGTGGTGTCTTGGCTCAGACAATGTTCTATTTTCCTGCCGAAAATAGGGATAAGTTCTG : GTACTCTACTGATTATGGCATGTTCAGATTCTGTATTGCTGATACTGAACATGATTGGAGAGAGGGCACCGAACAATATAAGTTCCTTGAACACTGCTTCGCATCTGTAGATAGACAGAAACAGCCATGGCTAATCTTCCTTGCACATAGGGTACTTGGTTACTCTTCTGGAGATTTTTACGCTGATGAAGGATCATTTGGAGAACCAATGGGGAGGGACAGCCTTCAAAAGCTTTGGCAGAAGTATAAAGTTGATATCGCCATATATGGTCATGTCCACAATTACGAAAGAACATGTCCCATTTACCAG : AATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTTGAAGCAATAGGCTCAATCTGA</gDNA_template>
            <first_frame> P  *  G  G  C  N  E  N  I  R  Y  V  V  A  H  F  M  G  S  S  C  S  S  R  G  N  I  S  *  R  S  S  S  S  K  D  C  C  S  *  C  Y  C  C  F  G  C  S  C  V  Y  Q  S  I  S  F  C  P  W  V  K   : R  P  K  P  R  M  D  N  S  G  V  W  H  R  Q  P  V  K  *  *  L  G  W  S  V  F  S  C  Q  F  Q  :  C  S  Y  V  *  P  *  K  *  H  G  D  S  T  T  F  V  Y  S  S  Y  K   : V  P  I  C  K  S  L  Q  S  Q  L  Q  K  D  R  K  R  I  A  K  A  S  I  D  Q  P  E  I  R  L  L  L  R  F  V  F  W  W  I  T  E   : S  K  A  G  C  S  V  K  Y  C  C  L  Y  K  S  K  C  T  I  I  P  A  V  S  T  G  K  D  M  E  *   : N  D  C  Y  M  D  K  W  I  *  Y  Q  *  S  R  A  L  C  G  V  G  P  T  T  W  T  T  D  S  F  T  G  R  D  F  D  Y  R  P  *  *  L  V  W :   C  T  S  K  N  C  W  M  A  R  S  W  I  H  S  H  *  F  S  E  G  V  V  A  Q  F  S  :  I  Y  L  Q  A  G  A  *  T  V  *  W  H  V  Y  L  E  S  D  V  Q  I  *  S  I  A  L  S  W  P  K  L  S  S  A  S  G  Y  F  W  *  H  G  K  G  L  D  T  L  K  I  C  F  C  F  R  I  E  S  *  V  F  I  S  V  H  R  Y  L  Y  F  T  V  L  K  L  W  K  L  L  S  I  E  F  H  V  L  P  F  R  S  Y  T  *  Q  R  P  I  I  A  F  L  T  T  G  R  S  *  W  L  N  C  V  Q  S  I  P  T  W  L  P  *  H  Y  Q  A  N  H  *  G  L  K  E  H  *  H  S  L  S  H  W  *  Y  C  L  R  Q  W  I  S  F  S  V  G  S  I  Y  F  S  S  R  A  N  Y  F  K  S  T  I  H  D  C  *  :  R  Q  P  *  T  R  L  A  *  *  W  V  I  L  W  *  K  G  F  R  W  R  V  W  C  L  G  S  D  N  V  L  F  S  C  R  K  *  G  *  V  L  :  V  L  Y  *  L  W  H  V  Q  I  L  Y  C  *  Y  *  T  *  L  E  R  G  H  R  T  I  *  V  P  *  T  L  L  R  I  C  R  *  T  E  T  A  M  A  N  L  P  C  T  *  G  T  W  L  L  F  W  R  F  L  R  *  *  R  I  I  W  R  T  N  G  E  G  Q  P  S  K  A  L  A  E  V  *  S  *  Y  R  H  I  W  S  C  P  Q  L  R  K  N  M  S  H  L  P   : E  Y  L  Y  N  D  R  E  E  L  V  Q  G  T  L  E  R  D  N  T  C  R  C  G  R  R  W  S  W  S  S  K  V  Y  I  P  P  D  *  V  E  Y  I  Q  R  L  R  L  W  I  C  E  D  D  S  I  R  S  F  K  P  L  V  R  V  Q  E  E  Q  R  W  Q  S  V  R  L  F  Q  Y  F  P  G  L  Q  R  H  L  G  M  H  C  G  *  L  P  K  H  D  I  G  I  L  I  G  L  *  R  C  L  Q  K  F  D  F  C  Y  I  A  S  H  Y  T  I  I  V  H  K  A  S  C  V  P  R  N  P  S  S  D  A  Q  T  P  G  A  S  Q  M  N  S  L  S  E  *  M  I  E  G  N  R  L  L  I  S  L  F  F  K  Y  L  C  Y  H  S  M  Y  C  Y  H  L  S  *  N  N  W  L  K  C  S  Q  Q  V  S  P  *  N  S  N  I  *  F  A  V  E  A  I  G  S  I  * </first_frame>
            <second_frame>  H  K  V  D  A  M  K  T  F  V  M  L  L  P  I  L  W  V  L  V  A  L  Q  G  V  T  S  H  E  D  H  P  L  A  R  I  A  V  H  N  A  I  A  A  L  D  A  R  A  Y  I  K  A  S  P  S  V  L  G  S  N  :  G  L  N  Q  E  W  I  T  L  E  Y  G  T  G  N  P  S  N  D  D  W  V  G  V  F  S  P  A  N  F  S :   A  A  T  C  D  P  E  N  N  M  V  T  P  P  L  L  C  T  A  P  I  K  :  Y  Q  F  A  N  R  S  N  P  N  Y  K  R  T  G  K  G  S  L  K  L  Q  L  I  N  Q  R  S  D  F  S  F  A  L  F  S  G  G  L  R  N  :  P  K  L  V  A  V  S  N  T  V  A  F  T  N  P  N  A  P  L  Y  P  R  L  A  Q  G  K  T  W  N  E  :  M  T  V  T  W  T  S  G  Y  D  I  N  E  A  E  P  F  V  E  W  G  P  Q  R  G  Q  Q  T  R  S  P  A  G  T  L  T  I  D  R  S  S  L  C   : G  A  P  A  R  T  V  G  W  R  D  P  G  F  I  H  T  S  F  L  K  E  L  W  P  N  L  V :   Y  T  Y  K  L  G  H  K  L  F  N  G  T  Y  I  W  S  Q  M  Y  K  F  K  A  S  P  Y  P  G  Q  S  S  L  Q  R  V  V  I  F  G  D  M  G  K  V  W  T  L  L  K  S  V  F  V  L  E  *  R  A  K  C  L  Y  L  C  I  D  I  C  T  L  P  S  *  N  S  G  S  C  S  L  L  S  F  M  F  F  H  S  E  V  T  L  D  S  D  L  L  L  P  F  *  R  Q  E  E  A  D  G  S  I  V  Y  N  Q  Y  Q  P  G  S  L  N  T  T  K  Q  I  I  E  D  L  K  N  I  D  I  V  F  H  I  G  D  I  V  Y  A  N  G  Y  L  S  Q  W  D  Q  F  T  S  Q  V  E  P  I  T  S  R  V  P  Y  M  I  A  S :   G  N  H  E  R  D  W  P  D  S  G  S  F  Y  G  K  K  D  S  G  G  E  C  G  V  L  A  Q  T  M  F  Y  F  P  A  E  N  R  D  K  F  W :   Y  S  T  D  Y  G  M  F  R  F  C  I  A  D  T  E  H  D  W  R  E  G  T  E  Q  Y  K  F  L  E  H  C  F  A  S  V  D  R  Q  K  Q  P  W  L  I  F  L  A  H  R  V  L  G  Y  S  S  G  D  F  Y  A  D  E  G  S  F  G  E  P  M  G  R  D  S  L  Q  K  L  W  Q  K  Y  K  V  D  I  A  I  Y  G  H  V  H  N  Y  E  R  T  C  P  I  Y  Q  :  N  I  C  T  M  T  E  K  N  S  Y  K  G  P  L  N  G  T  I  H  V  V  A  G  G  G  G  A  G  L  V  K  F  T  S  L  Q  T  K  W  S  I  F  K  D  Y  D  Y  G  F  V  K  M  T  A  F  D  H  S  N  L  L  F  E  Y  K  K  S  S  D  G  K  V  Y  D  S  F  N  I  S  R  D  Y  R  D  I  L  A  C  T  V  D  S  C  P  S  M  T  L  A  S  *  L  V  Y  E  D  V  F  K  S  L  I  S  V  I  *  H  P  T  I  P  S  S  C  T  K  H  P  A  F  R  G  I  Q  V  Q  M  H  K  H  Q  E  P  H  R  *  T  V  *  V  N  R  *  *  R  E  T  D  C  L  L  A  F  F  S  S  I  C  V  I  I  Q  C  I  A  I  I  F  H  K  T  I  G  L  N  V  H  N  K  C  L  H  K  T  A  I  Y  N  L  Q  L  K  Q  *  A  Q  S   </second_frame>
            <third_frame>   I  R  W  M  Q  *  K  H  S  L  C  C  C  P  F  Y  G  F  *  L  L  F  K  G  *  H  L  M  K  I  I  L  *  Q  G  L  L  F  I  M  L  L  L  L  W  M  L  V  R  I  S  K  H  L  L  L  S  L  G  Q  T :   A  *  T  K  N  G  *  L  W  S  M  A  Q  A  T  R  Q  M  M  I  G  L  E  C  F  L  L  P  I  S   : V  Q  L  R  V  T  L  K  I  T  W  *  L  H  H  F  C  V  Q  L  L  *  S :   T  N  L  Q  I  A  P  I  P  T  T  K  G  Q  E  K  D  R  *  S  F  N  *  S  T  R  D  Q  T  S  P  S  L  C  F  L  V  D  Y  G  I :   Q  S  W  L  Q  C  Q  I  L  L  P  L  Q  I  Q  M  H  H  Y  T  R  G  *  H  R  E  R  H  G  M  K :   *  L  L  H  G  Q  V  D  M  I  S  M  K  Q  S  P  L  W  S  G  A  H  N  V  D  N  R  L  V  H  R  Q  G  L  *  L  S  T  V  V  A  C  V  :  V  H  Q  Q  E  L  L  D  G  A  I  L  D  S  F  T  L  V  F  *  R  S  C  G  P  I  *   : Y  I  P  T  S  W  G  I  N  C  L  M  A  R  I  S  G  V  R  C  T  N  L  K  H  R  P  I  L  A  K  A  L  F  S  E  W  L  F  L  V  T  W  E  R  F  G  H  S  *  N  L  F  L  F  *  N  R  E  L  S  V  Y  I  C  A  *  I  F  V  L  Y  R  L  E  T  L  E  V  A  L  Y  *  V  S  C  S  S  I  Q  K  L  H  L  T  A  T  Y  Y  C  L  F  N  D  R  K  K  L  M  A  Q  L  C  T  I  N  T  N  L  A  P  L  T  L  P  S  K  S  L  R  T  *  R  T  L  T  *  S  F  T  L  V  I  L  F  T  P  M  D  I  F  L  S  G  I  N  L  L  L  K  *  S  Q  L  L  Q  E  Y  H  T  *  L  L   : A  A  T  M  N  A  I  G  L  I  V  G  H  F  M  V  K  R  I  Q  V  E  S  V  V  S  W  L  R  Q  C  S  I  F  L  P  K  I  G  I  S  S   : G  T  L  L  I  M  A  C  S  D  S  V  L  L  I  L  N  M  I  G  E  R  A  P  N  N  I  S  S  L  N  T  A  S  H  L  *  I  D  R  N  S  H  G  *  S  S  L  H  I  G  Y  L  V  T  L  L  E  I  F  T  L  M  K  D  H  L  E  N  Q  W  G  G  T  A  F  K  S  F  G  R  S  I  K  L  I  S  P  Y  M  V  M  S  T  I  T  K  E  H  V  P  F  T  R :   I  F  V  Q  *  P  R  R  T  R  T  R  D  P  *  T  G  Q  Y  M  S  L  R  E  E  V  E  L  V  *  *  S  L  H  P  S  R  L  S  G  V  Y  S  K  I  T  I  M  D  L  *  R  *  Q  H  S  I  I  Q  T  S  C  S  S  T  R  R  A  A  M  A  K  C  T  T  L  S  I  F  P  G  I  T  E  T  S  W  H  A  L  W  I  A  A  Q  A  *  H  W  H  L  D  W  F  M  K  M  S  S  K  V  *  F  L  L  Y  S  I  P  L  Y  H  H  R  A  Q  S  I  L  R  S  E  E  S  K  F  R  C  T  N  T  R  S  L  T  D  E  Q  F  E  *  I  D  D  R  G  K  Q  I  A  Y  *  P  F  F  Q  V  F  V  L  S  F  N  V  L  L  S  S  F  I  K  Q  L  A  *  M  F  T  T  S  V  S  I  K  Q  Q  Y  I  I  C  S  *  S  N  R  L  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59546" stop="59335"/>
                    <exon start="59245" stop="59120"/>
                    <exon start="58797" stop="58488"/>
                    <exon start="58090" stop="57785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQEEADGSIVYNQYQPGSLNTTKQIIEDLKNIDIVFHIGDIVYANGYLSQWDQFTSQVEPITSRVPYMIASGNHERDWPDSGSFYGKKDSGGECGVLAQTMFYFPAENRDKFWYSTDYGMFRFCIADTEHDWREGTEQYKFLEHCFASVDRQKQPWLIFLAHRVLGYSSGDFYADEGSFGEPMGRDSLQKLWQKYKVDIAIYGHVHNYERTCPIYQNICTMTEKNSYKGPLNGTIHVVAGGGGAGLVKFTSLQTKWSIFKDYDYGFVKMTAFDHSNLLFEYKKSSDGKVYDSFNISRDYRDILACTVDSCPSMTLAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62106" stop="61924"/>
                    <exon start="61759" stop="61668"/>
                    <exon start="61517" stop="61451"/>
                    <exon start="61365" stop="61243"/>
                    <exon start="60815" stop="60723"/>
                    <exon start="60566" stop="60437"/>
                    <exon start="60171" stop="60090"/>
                    <exon start="59853" stop="59682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKVDAMKTFVMLLPILWVLVALQGVTSHEDHPLARIAVHNAIAALDARAYIKASPSVLGSNGLNQEWITLEYGTGNPSNDDWVGVFSPANFSAATCDPENNMVTPPLLCTAPIKYQFANRSNPNYKRTGKGSLKLQLINQRSDFSFALFSGGLRNPKLVAVSNTVAFTNPNAPLYPRLAQGKTWNEMTVTWTSGYDINEAEPFVEWGPQRGQQTRSPAGTLTIDRSSLCGAPARTVGWRDPGFIHTSFLKELWPNLVYTYKLGHKLFNGTYIWSQMYKFKASPYPGQSSLQRVVIFGDMGKVWTLLKSVFVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60807" e_stop="60723"/>
            <exon e_start="60566" e_stop="60437"/>
            <exon e_start="60171" e_stop="60090"/>
            <exon e_start="59853" e_stop="59721"/>
            <exon e_start="59540" e_stop="59419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.156" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.783" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60807" e_stop="60723" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.732">
            <gDNA_intron_boundary i_start="60722" i_stop="60567" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60566" e_stop="60437" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.156" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60436" i_stop="60172" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60171" e_stop="60090" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60089" i_stop="59854" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59853" e_stop="59721" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.783">
            <gDNA_intron_boundary i_start="59720" i_stop="59541" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59540" e_stop="59419" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60807" stop="60723"/>
              <exon start="60566" stop="60437"/>
              <exon start="60171" stop="60090"/>
              <exon start="59853" stop="59753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60806" stop="60723"/>
              <exon start="60566" stop="60437"/>
              <exon start="60171" stop="60090"/>
              <exon start="59853" stop="59721"/>
              <exon start="59540" stop="59419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAA : ATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTG : GTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGT : ATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAG : GAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTA</gDNA_template>
            <first_frame> G  C  S  V  K  Y  C  C  L  Y  K  S  K  C  T  I  I  P  A  V  S  T  G  K  D  M  E  *   : N  D  C  Y  M  D  K  W  I  *  Y  Q  *  S  R  A  L  C  G  V  G  P  T  T  W  T  T  D  S  F  T  G  R  D  F  D  Y  R  P  *  *  L  V  W :   C  T  S  K  N  C  W  M  A  R  S  W  I  H  S  H  *  F  S  E  G  V  V  A  Q  F  S  :  I  Y  L  Q  A  G  A  *  T  V  *  W  H  V  Y  L  E  S  D  V  Q  I  *  S  I  A  L  S  W  P  K  L  S  S  A  S  G  Y  F  W  *  H  G  K   : G  R  S  *  W  L  N  C  V  Q  S  I  P  T  W  L  P  *  H  Y  Q  A  N  H  *  G  L  K  E  H  *  H  S  L  S  H  W  *  Y  C  L </first_frame>
            <second_frame>  V  A  V  S  N  T  V  A  F  T  N  P  N  A  P  L  Y  P  R  L  A  Q  G  K  T  W  N  E  :  M  T  V  T  W  T  S  G  Y  D  I  N  E  A  E  P  F  V  E  W  G  P  Q  R  G  Q  Q  T  R  S  P  A  G  T  L  T  I  D  R  S  S  L  C   : G  A  P  A  R  T  V  G  W  R  D  P  G  F  I  H  T  S  F  L  K  E  L  W  P  N  L  V :   Y  T  Y  K  L  G  H  K  L  F  N  G  T  Y  I  W  S  Q  M  Y  K  F  K  A  S  P  Y  P  G  Q  S  S  L  Q  R  V  V  I  F  G  D  M  G  K  :  E  E  A  D  G  S  I  V  Y  N  Q  Y  Q  P  G  S  L  N  T  T  K  Q  I  I  E  D  L  K  N  I  D  I  V  F  H  I  G  D  I  V   </second_frame>
            <third_frame>   L  Q  C  Q  I  L  L  P  L  Q  I  Q  M  H  H  Y  T  R  G  *  H  R  E  R  H  G  M  K :   *  L  L  H  G  Q  V  D  M  I  S  M  K  Q  S  P  L  W  S  G  A  H  N  V  D  N  R  L  V  H  R  Q  G  L  *  L  S  T  V  V  A  C  V  :  V  H  Q  Q  E  L  L  D  G  A  I  L  D  S  F  T  L  V  F  *  R  S  C  G  P  I  *   : Y  I  P  T  S  W  G  I  N  C  L  M  A  R  I  S  G  V  R  C  T  N  L  K  H  R  P  I  L  A  K  A  L  F  S  E  W  L  F  L  V  T  W  E  R :   K  K  L  M  A  Q  L  C  T  I  N  T  N  L  A  P  L  T  L  P  S  K  S  L  R  T  *  R  T  L  T  *  S  F  T  L  V  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60806" stop="60723"/>
                    <exon start="60566" stop="60437"/>
                    <exon start="60171" stop="60090"/>
                    <exon start="59853" stop="59721"/>
                    <exon start="59540" stop="59421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAVSNTVAFTNPNAPLYPRLAQGKTWNEMTVTWTSGYDINEAEPFVEWGPQRGQQTRSPAGTLTIDRSSLCGAPARTVGWRDPGFIHTSFLKELWPNLVYTYKLGHKLFNGTYIWSQMYKFKASPYPGQSSLQRVVIFGDMGKEEADGSIVYNQYQPGSLNTTKQIIEDLKNIDIVFHIGDIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68181" PGL_stop="74367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68181" e_stop="68221"/>
            <exon e_start="68327" e_stop="68385"/>
            <exon e_start="68496" e_stop="68577"/>
            <exon e_start="69874" e_stop="70015"/>
            <exon e_start="70585" e_stop="70633"/>
            <exon e_start="70780" e_stop="70962"/>
            <exon e_start="72336" e_stop="72410"/>
            <exon e_start="72553" e_stop="72738"/>
            <exon e_start="73345" e_stop="73433"/>
            <exon e_start="73527" e_stop="74276"/>
            <exon e_start="74354" e_stop="74367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.537" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.497" e_score="0.988"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68181" e_stop="68221" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.537" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68222" i_stop="68326" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68327" e_stop="68385" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68386" i_stop="68495" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68496" e_stop="68577" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.918">
            <gDNA_intron_boundary i_start="68578" i_stop="69873" i_length="1296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69874" e_stop="70015" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70016" i_stop="70584" i_length="569"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70585" e_stop="70633" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70634" i_stop="70779" i_length="146"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70780" e_stop="70962" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.674">
            <gDNA_intron_boundary i_start="70963" i_stop="72335" i_length="1373"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72336" e_stop="72410" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="72411" i_stop="72552" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="72553" e_stop="72738" e_length="186"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72739" i_stop="73344" i_length="606"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="73345" e_stop="73433" e_length="89"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="73527" e_stop="74276" e_length="750"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.497">
            <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="0.571">
            <gDNA_exon_boundary e_start="74354" e_stop="74367" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68181" stop="68221"/>
              <exon start="68327" stop="68385"/>
              <exon start="68496" stop="68577"/>
              <exon start="69874" stop="70015"/>
              <exon start="70585" stop="70633"/>
              <exon start="70780" stop="70962"/>
              <exon start="72336" stop="72410"/>
              <exon start="72553" stop="72720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68182" stop="68221"/>
              <exon start="68327" stop="68385"/>
              <exon start="68496" stop="68577"/>
              <exon start="69874" stop="70015"/>
              <exon start="70585" stop="70633"/>
              <exon start="70780" stop="70784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70814" stop="70962"/>
              <exon start="72336" stop="72410"/>
              <exon start="72553" stop="72702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72663" stop="72738"/>
              <exon start="73345" stop="73433"/>
              <exon start="73527" stop="74272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73433"/>
              <exon start="73527" stop="74033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73563" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTCTTCTGTCAATCTTCTATTCAGGGGCTCTGTAAAAA : GTTCACATAGGATTCAGGATAAGTTTTGGTGTTCAAAAAAGTTGGGTTCTTTGCAAGAG : CTTGGTGTAAAAGCCAGTGAATTTAATGGTGTTGCAATTGCTCATAGCAGTTCTAGCTTTGCTTCCCCTTGTGCCACTCATG : CTATCCAGGCAGTCTTGGGCAATGACAAAGCAACAACAAGCTCCACTGTTATTTTGGAAAAACCTCTTCGCAAAAAATTGAACAAAGTGGTTCTTGCTTATAGTGGTGGCTTGGACACTTCAGTTATTGTACCTTGGCTAAG : GGAGAACTATGGCTGTGAAGTTGTCTGTTTCACTGCAGATGTTGGTCAA : GGGATTAAGGAATTGGAAGGCTTGGAAGCAAAGGCCAAGGCTAGTGGGGCTTGTCAATTAGTGGTGAAGGATTTGCAAGAAGAATTTGTGAAAGATTACATATTTCCTTGTCTGCGAGCTGGTGCTATCTATGAAAGGAAATACTTGCTTGGGACATCAATGGCCCGCCCGGTTATTGCTAAG : GCAATGGTTGATGTTGCCAGAGAGGTTGGAGCTGATGCTGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAG : GTCCGTTTTGAGCTGACATTCTTTGCTCTGAATCCTGAACTCAGTGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAG : GGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA : GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAA : TACACAACAAAATG</gDNA_template>
            <first_frame> M  F  F  C  Q  S  S  I  Q  G  L  C  K  K :   F  T  *  D  S  G  *  V  L  V  F  K  K  V  G  F  F  A  R   : A  W  C  K  S  Q  *  I  *  W  C  C  N  C  S  *  Q  F  *  L  C  F  P  L  C  H  S  C :   Y  P  G  S  L  G  Q  *  Q  S  N  N  K  L  H  C  Y  F  G  K  T  S  S  Q  K  I  E  Q  S  G  S  C  L  *  W  W  L  G  H  F  S  Y  C  T  L  A  K  :  G  E  L  W  L  *  S  C  L  F  H  C  R  C  W  S   : R  D  *  G  I  G  R  L  G  S  K  G  Q  G  *  W  G  L  S  I  S  G  E  G  F  A  R  R  I  C  E  R  L  H  I  S  L  S  A  S  W  C  Y  L  *  K  E  I  L  A  W  D  I  N  G  P  P  G  Y  C  *   : G  N  G  *  C  C  Q  R  G  W  S  *  C  C  F  S  W  M  H  R  E  G  K  *  S   : G  P  F  *  A  D  I  L  C  S  E  S  *  T  Q  C  C  C  P  L  E  G  M  G  N  Y  R  K  R  G  C  Y  *  I  C  *  E  A  Q  C  T  S  S  G  D  K  E  I  Y  L  *  Q  R  Q  K  L  V  A  S  *  S  R   : G  R  Y  S  *  G  P  C  K  *  A  N  E  G  Y  V  Y  D  V  S  *  S  P  R  C  T  *  S  T  *  :  V  C  E  H  W  D  S  C  W  Y  S  C  F  S  K  W  K  G  A  L  S  C  N  S  S  F  *  A  K  *  N  W  R  K  T  W  N  W  T  N  R  H  G  *  K  *  A  C  W  N  E  E  P  W  S  I  *  N  P  W  G  N  Y  P  F  L  S  C  A  R  T  *  V  S  Y  T  *  S  *  N  N  P  S  Q  G  F  S  R  P  Q  I  C  R  I  S  L  C  W  Q  V  V  *  S  T  S  R  V  N  G  C  F  H  G  E  Y  Y  Q  N  Y  N  R  F  S  Y  S  Q  T  I  Q  R  I  S  F  S  D  R  S  S  K  S  S  Q  F  V  Q  T  R  Y  L  I  I  R  E  W  G  Y  L  Q  S  S  R  C  C  R  I  H  S  S  V  W  A  S  N  E  G  *  G  N  A  *  E  G  S  L  N  L  F  S  R  R  E  L  M  V  *  C  *  Q  F  H  Q  R  V  K  *  N  L  V  F  F  H  F  I  A  L  *  F  F  C  T  A  L  E  A  S  L  S  F  K  L  S  C  R  N  F  L  W  F  N  I  F  E  S  P  L  R  K  I  A  K  :  Y  T  T  K   </first_frame>
            <second_frame>  C  S  S  V  N  L  L  F  R  G  S  V  K   : S  S  H  R  I  Q  D  K  F  W  C  S  K  K  L  G  S  L  Q  E  :  L  G  V  K  A  S  E  F  N  G  V  A  I  A  H  S  S  S  S  F  A  S  P  C  A  T  H   : A  I  Q  A  V  L  G  N  D  K  A  T  T  S  S  T  V  I  L  E  K  P  L  R  K  K  L  N  K  V  V  L  A  Y  S  G  G  L  D  T  S  V  I  V  P  W  L  R :   E  N  Y  G  C  E  V  V  C  F  T  A  D  V  G  Q  :  G  I  K  E  L  E  G  L  E  A  K  A  K  A  S  G  A  C  Q  L  V  V  K  D  L  Q  E  E  F  V  K  D  Y  I  F  P  C  L  R  A  G  A  I  Y  E  R  K  Y  L  L  G  T  S  M  A  R  P  V  I  A  K  :  A  M  V  D  V  A  R  E  V  G  A  D  A  V  S  H  G  C  T  G  K  G  N  D  Q  :  V  R  F  E  L  T  F  F  A  L  N  P  E  L  S  V  V  A  P  W  R  E  W  E  I  T  G  R  E  D  A  I  E  Y  A  K  K  H  N  V  P  V  P  V  T  K  K  S  I  Y  S  R  D  R  N  L  W  H  L  S  H  E  :  G  D  I  L  E  D  P  A  N  E  P  M  K  D  M  Y  M  M  S  V  D  P  Q  D  A  P  D  Q  P  E :   Y  V  N  I  G  I  V  A  G  I  P  V  S  V  N  G  K  E  L  S  P  A  T  L  L  S  E  L  N  E  I  G  G  R  H  G  I  G  R  I  D  M  V  E  N  R  L  V  G  M  K  S  R  G  V  Y  E  T  P  G  G  T  I  L  F  S  A  V  Q  E  L  E  S  L  T  L  D  R  E  T  I  Q  V  K  D  S  L  A  L  K  Y  A  E  L  V  Y  A  G  R  W  F  D  P  L  R  E  S  M  D  A  F  M  E  N  I  T  K  T  T  T  G  S  V  T  L  K  L  Y  K  G  S  V  S  V  T  G  R  Q  S  P  H  S  L  Y  R  Q  D  I  S  S  F  E  S  G  D  I  Y  N  Q  A  D  A  A  G  F  I  R  L  Y  G  L  P  M  R  V  R  A  M  L  E  K  G  L  *  I  C  F  R  V  V  N  *  W  F  S  V  D  S  S  I  K  G  S  S  R  I  L  F  F  S  I  S  *  H  C  S  F  F  V  R  L  W  R  L  V  Y  R  S  N  C  L  A  E  I  S  S  G  S  I  Y  L  K  V  H  *  E  K  L  L  N :   T  Q  Q  N  </second_frame>
            <third_frame>   V  L  L  S  I  F  Y  S  G  A  L  *  K  :  V  H  I  G  F  R  I  S  F  G  V  Q  K  S  W  V  L  C  K  S :   L  V  *  K  P  V  N  L  M  V  L  Q  L  L  I  A  V  L  A  L  L  P  L  V  P  L  M  :  L  S  R  Q  S  W  A  M  T  K  Q  Q  Q  A  P  L  L  F  W  K  N  L  F  A  K  N  *  T  K  W  F  L  L  I  V  V  A  W  T  L  Q  L  L  Y  L  G  *   : G  R  T  M  A  V  K  L  S  V  S  L  Q  M  L  V  K :   G  L  R  N  W  K  A  W  K  Q  R  P  R  L  V  G  L  V  N  *  W  *  R  I  C  K  K  N  L  *  K  I  T  Y  F  L  V  C  E  L  V  L  S  M  K  G  N  T  C  L  G  H  Q  W  P  A  R  L  L  L  R :   Q  W  L  M  L  P  E  R  L  E  L  M  L  F  L  M  D  A  Q  G  R  E  M  I  R :   S  V  L  S  *  H  S  L  L  *  I  L  N  S  V  L  L  P  L  G  G  N  G  K  L  Q  E  E  R  M  L  L  N  M  L  R  S  T  M  Y  Q  F  R  *  Q  R  N  L  S  I  A  E  T  E  T  C  G  I  L  V  T  R :   E  I  F  L  R  T  L  Q  M  S  Q  *  R  I  C  I  *  C  Q  L  I  P  K  M  H  L  I  N  L   : S  M  *  T  L  G  *  L  L  V  F  L  F  Q  *  M  E  R  S  S  L  L  Q  L  F  F  L  S  *  M  K  L  A  E  D  M  E  L  D  E  *  T  W  L  K  I  G  L  L  E  *  R  A  V  E  Y  M  K  P  L  G  E  L  S  F  S  Q  L  C  K  N  L  S  L  L  H  L  I  V  K  Q  S  K  S  R  I  L  S  P  S  N  M  Q  N  *  F  M  L  A  G  G  L  I  H  F  A  S  Q  W  M  L  S  W  R  I  L  P  K  L  Q  Q  V  Q  L  L  S  N  Y  T  K  D  Q  F  Q  *  Q  V  V  K  V  L  T  V  C  T  D  K  I  S  H  H  S  R  V  G  I  S  T  I  K  P  M  L  Q  D  S  F  V  C  M  G  F  Q  *  G  L  G  Q  C  L  R  R  V  F  K  F  V  F  A  S  *  I  D  G  L  V  L  T  V  P  S  K  G  Q  V  E  S  C  F  F  P  F  H  S  T  V  V  F  L  Y  G  F  G  G  *  F  I  V  Q  I  V  L  Q  K  F  P  L  V  Q  Y  I  *  K  S  I  K  K  N  C  *   : I  H  N  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68182" stop="68221"/>
                    <exon start="68327" stop="68385"/>
                    <exon start="68496" stop="68577"/>
                    <exon start="69874" stop="70015"/>
                    <exon start="70585" stop="70633"/>
                    <exon start="70780" stop="70962"/>
                    <exon start="72336" stop="72410"/>
                    <exon start="72553" stop="72738"/>
                    <exon start="73345" stop="73433"/>
                    <exon start="73527" stop="74079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSSVNLLFRGSVKSSHRIQDKFWCSKKLGSLQELGVKASEFNGVAIAHSSSSFASPCATHAIQAVLGNDKATTSSTVILEKPLRKKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELEGLEAKAKASGACQLVVKDLQEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVSHGCTGKGNDQVRFELTFFALNPELSVVAPWREWEITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPMKDMYMMSVDPQDAPDQPEYVNIGIVAGIPVSVNGKELSPATLLSELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMENITKTTTGSVTLKLYKGSVSVTGRQSPHSLYRQDISSFESGDIYNQADAAGFIRLYGLPMRVRAMLEKGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73119" e_stop="73433"/>
            <exon e_start="73527" e_stop="74276"/>
            <exon e_start="74354" e_stop="74367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.497" e_score="0.972"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="73119" e_stop="73433" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="73527" e_stop="74276" e_length="750"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.497">
            <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="74354" e_stop="74367" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73119" stop="73433"/>
              <exon start="73527" stop="73766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73433"/>
              <exon start="73527" stop="74033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73563" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA : GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAA : TACACAACAAAATG</gDNA_template>
            <first_frame> E  T  K  T  S  K  I  K  K  M  L  *  R  R  L  C  H  W  A  K  I  *  T  G  T  S  K  V  Q  W  S  P  P  T  *  V  M  G  L  P  D  R  P  S  T  L  F  R  *  I  *  R  K  Y  *  S  M  A  M  *  I  T  D  Y  T  C  K  T  H  L  K  M  V  F  E  G  R  Y  S  *  G  P  C  K  *  A  N  E  G  Y  V  Y  D  V  S  *  S  P  R  C  T  *  S  T  *  :  V  C  E  H  W  D  S  C  W  Y  S  C  F  S  K  W  K  G  A  L  S  C  N  S  S  F  *  A  K  *  N  W  R  K  T  W  N  W  T  N  R  H  G  *  K  *  A  C  W  N  E  E  P  W  S  I  *  N  P  W  G  N  Y  P  F  L  S  C  A  R  T  *  V  S  Y  T  *  S  *  N  N  P  S  Q  G  F  S  R  P  Q  I  C  R  I  S  L  C  W  Q  V  V  *  S  T  S  R  V  N  G  C  F  H  G  E  Y  Y  Q  N  Y  N  R  F  S  Y  S  Q  T  I  Q  R  I  S  F  S  D  R  S  S  K  S  S  Q  F  V  Q  T  R  Y  L  I  I  R  E  W  G  Y  L  Q  S  S  R  C  C  R  I  H  S  S  V  W  A  S  N  E  G  *  G  N  A  *  E  G  S  L  N  L  F  S  R  R  E  L  M  V  *  C  *  Q  F  H  Q  R  V  K  *  N  L  V  F  F  H  F  I  A  L  *  F  F  C  T  A  L  E  A  S  L  S  F  K  L  S  C  R  N  F  L  W  F  N  I  F  E  S  P  L  R  K  I  A  K  :  Y  T  T  K   </first_frame>
            <second_frame>  K  L  K  H  Q  K  L  R  K  C  Y  D  V  G  S  A  T  G  P  K  F  R  R  A  L  P  K  C  N  G  A  H  Q  P  R  S  W  A  F  L  I  A  H  R  P  Y  S  G  K  F  E  E  N  I  E  V  W  P  C  E  *  L  I  I  P  V  K  L  I  *  K  W  Y  L  K  G  D  I  L  E  D  P  A  N  E  P  M  K  D  M  Y  M  M  S  V  D  P  Q  D  A  P  D  Q  P  E :   Y  V  N  I  G  I  V  A  G  I  P  V  S  V  N  G  K  E  L  S  P  A  T  L  L  S  E  L  N  E  I  G  G  R  H  G  I  G  R  I  D  M  V  E  N  R  L  V  G  M  K  S  R  G  V  Y  E  T  P  G  G  T  I  L  F  S  A  V  Q  E  L  E  S  L  T  L  D  R  E  T  I  Q  V  K  D  S  L  A  L  K  Y  A  E  L  V  Y  A  G  R  W  F  D  P  L  R  E  S  M  D  A  F  M  E  N  I  T  K  T  T  T  G  S  V  T  L  K  L  Y  K  G  S  V  S  V  T  G  R  Q  S  P  H  S  L  Y  R  Q  D  I  S  S  F  E  S  G  D  I  Y  N  Q  A  D  A  A  G  F  I  R  L  Y  G  L  P  M  R  V  R  A  M  L  E  K  G  L  *  I  C  F  R  V  V  N  *  W  F  S  V  D  S  S  I  K  G  S  S  R  I  L  F  F  S  I  S  *  H  C  S  F  F  V  R  L  W  R  L  V  Y  R  S  N  C  L  A  E  I  S  S  G  S  I  Y  L  K  V  H  *  E  K  L  L  N :   T  Q  Q  N  </second_frame>
            <third_frame>   N  *  N  I  K  N  *  E  N  V  M  T  *  A  L  P  L  G  Q  N  L  D  G  H  F  Q  S  A  M  E  P  T  N  L  G  H  G  P  S  *  S  P  I  D  P  I  Q  V  N  L  K  K  I  L  K  Y  G  H  V  N  N  *  L  Y  L  *  N  S  F  E  N  G  I  *  R  E  I  F  L  R  T  L  Q  M  S  Q  *  R  I  C  I  *  C  Q  L  I  P  K  M  H  L  I  N  L   : S  M  *  T  L  G  *  L  L  V  F  L  F  Q  *  M  E  R  S  S  L  L  Q  L  F  F  L  S  *  M  K  L  A  E  D  M  E  L  D  E  *  T  W  L  K  I  G  L  L  E  *  R  A  V  E  Y  M  K  P  L  G  E  L  S  F  S  Q  L  C  K  N  L  S  L  L  H  L  I  V  K  Q  S  K  S  R  I  L  S  P  S  N  M  Q  N  *  F  M  L  A  G  G  L  I  H  F  A  S  Q  W  M  L  S  W  R  I  L  P  K  L  Q  Q  V  Q  L  L  S  N  Y  T  K  D  Q  F  Q  *  Q  V  V  K  V  L  T  V  C  T  D  K  I  S  H  H  S  R  V  G  I  S  T  I  K  P  M  L  Q  D  S  F  V  C  M  G  F  Q  *  G  L  G  Q  C  L  R  R  V  F  K  F  V  F  A  S  *  I  D  G  L  V  L  T  V  P  S  K  G  Q  V  E  S  C  F  F  P  F  H  S  T  V  V  F  L  Y  G  F  G  G  *  F  I  V  Q  I  V  L  Q  K  F  P  L  V  Q  Y  I  *  K  S  I  K  K  N  C  *   : I  H  N  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73330" stop="73433"/>
                    <exon start="73527" stop="74079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWYLKGDILEDPANEPMKDMYMMSVDPQDAPDQPEYVNIGIVAGIPVSVNGKELSPATLLSELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMENITKTTTGSVTLKLYKGSVSVTGRQSPHSLYRQDISSFESGDIYNQADAAGFIRLYGLPMRVRAMLEKGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72374" e_stop="72410"/>
            <exon e_start="72597" e_stop="72738"/>
            <exon e_start="73160" e_stop="73261"/>
            <exon e_start="73345" e_stop="73433"/>
            <exon e_start="73527" e_stop="74276"/>
            <exon e_start="74354" e_stop="74367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.127" e_score="0.973"/>
          <exon-intron don_prob="0.983" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.497" e_score="0.972"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="72374" e_stop="72410" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.127">
            <gDNA_intron_boundary i_start="72411" i_stop="72596" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72597" e_stop="72738" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.943">
            <gDNA_intron_boundary i_start="72739" i_stop="73159" i_length="421"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="73160" e_stop="73261" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73262" i_stop="73344" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73345" e_stop="73433" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="73527" e_stop="74276" e_length="750"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.497">
            <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="74354" e_stop="74367" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72374" stop="72410"/>
              <exon start="72597" stop="72738"/>
              <exon start="73160" stop="73261"/>
              <exon start="73345" stop="73433"/>
              <exon start="73527" stop="74002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73433"/>
              <exon start="73527" stop="74033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73563" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTCTCATGGATGCACAGGGAAGGGAAATGATCAG : TGTTGTTGCCCCTTGGAGGGAATGGGAAATTACAGGAAGAGAGGATGCTATTGAATATGCTAAGAAGCACAATGTACCAGTTCCGGTGACAAAGAAATCTATCTATAGCAGAGACAGAAACTTGTGGCATCTTAGTCACGAG : GCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAG : GGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA : GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAA : TACACAACAAAATG</gDNA_template>
            <first_frame> C  F  S  W  M  H  R  E  G  K  *  S   : V  L  L  P  L  G  G  N  G  K  L  Q  E  E  R  M  L  L  N  M  L  R  S  T  M  Y  Q  F  R  *  Q  R  N  L  S  I  A  E  T  E  T  C  G  I  L  V  T  R :   L  C  H  W  A  K  I  *  T  G  T  S  K  V  Q  W  S  P  P  T  *  V  M  G  L  P  D  R  P  S  T  L  F  R :   E  I  F  L  R  T  L  Q  M  S  Q  *  R  I  C  I  *  C  Q  L  I  P  K  M  H  L  I  N  L   : S  M  *  T  L  G  *  L  L  V  F  L  F  Q  *  M  E  R  S  S  L  L  Q  L  F  F  L  S  *  M  K  L  A  E  D  M  E  L  D  E  *  T  W  L  K  I  G  L  L  E  *  R  A  V  E  Y  M  K  P  L  G  E  L  S  F  S  Q  L  C  K  N  L  S  L  L  H  L  I  V  K  Q  S  K  S  R  I  L  S  P  S  N  M  Q  N  *  F  M  L  A  G  G  L  I  H  F  A  S  Q  W  M  L  S  W  R  I  L  P  K  L  Q  Q  V  Q  L  L  S  N  Y  T  K  D  Q  F  Q  *  Q  V  V  K  V  L  T  V  C  T  D  K  I  S  H  H  S  R  V  G  I  S  T  I  K  P  M  L  Q  D  S  F  V  C  M  G  F  Q  *  G  L  G  Q  C  L  R  R  V  F  K  F  V  F  A  S  *  I  D  G  L  V  L  T  V  P  S  K  G  Q  V  E  S  C  F  F  P  F  H  S  T  V  V  F  L  Y  G  F  G  G  *  F  I  V  Q  I  V  L  Q  K  F  P  L  V  Q  Y  I  *  K  S  I  K  K  N  C  *   : I  H  N  K  M </first_frame>
            <second_frame>  V  S  H  G  C  T  G  K  G  N  D  Q  :  C  C  C  P  L  E  G  M  G  N  Y  R  K  R  G  C  Y  *  I  C  *  E  A  Q  C  T  S  S  G  D  K  E  I  Y  L  *  Q  R  Q  K  L  V  A  S  *  S  R   : G  S  A  T  G  P  K  F  R  R  A  L  P  K  C  N  G  A  H  Q  P  R  S  W  A  F  L  I  A  H  R  P  Y  S   : G  R  Y  S  *  G  P  C  K  *  A  N  E  G  Y  V  Y  D  V  S  *  S  P  R  C  T  *  S  T  *  :  V  C  E  H  W  D  S  C  W  Y  S  C  F  S  K  W  K  G  A  L  S  C  N  S  S  F  *  A  K  *  N  W  R  K  T  W  N  W  T  N  R  H  G  *  K  *  A  C  W  N  E  E  P  W  S  I  *  N  P  W  G  N  Y  P  F  L  S  C  A  R  T  *  V  S  Y  T  *  S  *  N  N  P  S  Q  G  F  S  R  P  Q  I  C  R  I  S  L  C  W  Q  V  V  *  S  T  S  R  V  N  G  C  F  H  G  E  Y  Y  Q  N  Y  N  R  F  S  Y  S  Q  T  I  Q  R  I  S  F  S  D  R  S  S  K  S  S  Q  F  V  Q  T  R  Y  L  I  I  R  E  W  G  Y  L  Q  S  S  R  C  C  R  I  H  S  S  V  W  A  S  N  E  G  *  G  N  A  *  E  G  S  L  N  L  F  S  R  R  E  L  M  V  *  C  *  Q  F  H  Q  R  V  K  *  N  L  V  F  F  H  F  I  A  L  *  F  F  C  T  A  L  E  A  S  L  S  F  K  L  S  C  R  N  F  L  W  F  N  I  F  E  S  P  L  R  K  I  A  K  :  Y  T  T  K   </second_frame>
            <third_frame>   F  L  M  D  A  Q  G  R  E  M  I  S :   V  V  A  P  W  R  E  W  E  I  T  G  R  E  D  A  I  E  Y  A  K  K  H  N  V  P  V  P  V  T  K  K  S  I  Y  S  R  D  R  N  L  W  H  L  S  H  E  :  A  L  P  L  G  Q  N  L  D  G  H  F  Q  S  A  M  E  P  T  N  L  G  H  G  P  S  *  S  P  I  D  P  I  Q  :  G  D  I  L  E  D  P  A  N  E  P  M  K  D  M  Y  M  M  S  V  D  P  Q  D  A  P  D  Q  P  E :   Y  V  N  I  G  I  V  A  G  I  P  V  S  V  N  G  K  E  L  S  P  A  T  L  L  S  E  L  N  E  I  G  G  R  H  G  I  G  R  I  D  M  V  E  N  R  L  V  G  M  K  S  R  G  V  Y  E  T  P  G  G  T  I  L  F  S  A  V  Q  E  L  E  S  L  T  L  D  R  E  T  I  Q  V  K  D  S  L  A  L  K  Y  A  E  L  V  Y  A  G  R  W  F  D  P  L  R  E  S  M  D  A  F  M  E  N  I  T  K  T  T  T  G  S  V  T  L  K  L  Y  K  G  S  V  S  V  T  G  R  Q  S  P  H  S  L  Y  R  Q  D  I  S  S  F  E  S  G  D  I  Y  N  Q  A  D  A  A  G  F  I  R  L  Y  G  L  P  M  R  V  R  A  M  L  E  K  G  L  *  I  C  F  R  V  V  N  *  W  F  S  V  D  S  S  I  K  G  S  S  R  I  L  F  F  S  I  S  *  H  C  S  F  F  V  R  L  W  R  L  V  Y  R  S  N  C  L  A  E  I  S  S  G  S  I  Y  L  K  V  H  *  E  K  L  L  N :   T  Q  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73241" stop="73261"/>
                    <exon start="73345" stop="73433"/>
                    <exon start="73527" stop="74079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPIDPIQGDILEDPANEPMKDMYMMSVDPQDAPDQPEYVNIGIVAGIPVSVNGKELSPATLLSELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMENITKTTTGSVTLKLYKGSVSVTGRQSPHSLYRQDISSFESGDIYNQADAAGFIRLYGLPMRVRAMLEKGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72376" stop="72410"/>
                    <exon start="72597" stop="72738"/>
                    <exon start="73160" stop="73240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMDAQGREMISVVAPWREWEITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEALPLGQNLDGHFQSAMEPTNLGHGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73127" e_stop="74276"/>
            <exon e_start="74354" e_stop="74367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.497" e_score="0.972"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="73127" e_stop="74276" e_length="1150"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.497">
            <gDNA_intron_boundary i_start="74277" i_stop="74353" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="74354" e_stop="74367" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73127" stop="73568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73563" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="74276"/>
              <exon start="74354" stop="74367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="74121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAATTGCTAAA : TACACAACAAAATG</gDNA_template>
            <first_frame> N  I  K  N  *  E  N  V  M  T  *  A  L  P  L  G  Q  N  L  D  G  H  F  Q  S  A  M  E  P  T  N  L  G  H  G  P  S  *  S  P  I  D  P  I  Q  V  N  L  K  K  I  L  K  Y  G  H  V  N  N  *  L  Y  L  *  N  S  F  E  N  G  I  *  R  E  I  F  L  R  T  L  Q  M  S  Q  *  R  I  C  I  *  C  Q  L  I  P  K  M  H  L  I  N  L  S  E  N  L  L  F  *  F  S  Y  L  L  *  *  K  D  L  M  H  F  F  L  T  F  K  A  A  S  N  C  A  G  M  *  T  L  G  *  L  L  V  F  L  F  Q  *  M  E  R  S  S  L  L  Q  L  F  F  L  S  *  M  K  L  A  E  D  M  E  L  D  E  *  T  W  L  K  I  G  L  L  E  *  R  A  V  E  Y  M  K  P  L  G  E  L  S  F  S  Q  L  C  K  N  L  S  L  L  H  L  I  V  K  Q  S  K  S  R  I  L  S  P  S  N  M  Q  N  *  F  M  L  A  G  G  L  I  H  F  A  S  Q  W  M  L  S  W  R  I  L  P  K  L  Q  Q  V  Q  L  L  S  N  Y  T  K  D  Q  F  Q  *  Q  V  V  K  V  L  T  V  C  T  D  K  I  S  H  H  S  R  V  G  I  S  T  I  K  P  M  L  Q  D  S  F  V  C  M  G  F  Q  *  G  L  G  Q  C  L  R  R  V  F  K  F  V  F  A  S  *  I  D  G  L  V  L  T  V  P  S  K  G  Q  V  E  S  C  F  F  P  F  H  S  T  V  V  F  L  Y  G  F  G  G  *  F  I  V  Q  I  V  L  Q  K  F  P  L  V  Q  Y  I  *  K  S  I  K  K  N  C  *   : I  H  N  K  M </first_frame>
            <second_frame>  T  S  K  I  K  K  M  L  *  R  R  L  C  H  W  A  K  I  *  T  G  T  S  K  V  Q  W  S  P  P  T  *  V  M  G  L  P  D  R  P  S  T  L  F  R  *  I  *  R  K  Y  *  S  M  A  M  *  I  T  D  Y  T  C  K  T  H  L  K  M  V  F  E  G  R  Y  S  *  G  P  C  K  *  A  N  E  G  Y  V  Y  D  V  S  *  S  P  R  C  T  *  S  T  *  V  R  I  F  Y  F  D  F  L  I  Y  C  S  K  K  I  *  C  I  S  F  S  L  S  K  L  L  L  T  V  Q  V  C  E  H  W  D  S  C  W  Y  S  C  F  S  K  W  K  G  A  L  S  C  N  S  S  F  *  A  K  *  N  W  R  K  T  W  N  W  T  N  R  H  G  *  K  *  A  C  W  N  E  E  P  W  S  I  *  N  P  W  G  N  Y  P  F  L  S  C  A  R  T  *  V  S  Y  T  *  S  *  N  N  P  S  Q  G  F  S  R  P  Q  I  C  R  I  S  L  C  W  Q  V  V  *  S  T  S  R  V  N  G  C  F  H  G  E  Y  Y  Q  N  Y  N  R  F  S  Y  S  Q  T  I  Q  R  I  S  F  S  D  R  S  S  K  S  S  Q  F  V  Q  T  R  Y  L  I  I  R  E  W  G  Y  L  Q  S  S  R  C  C  R  I  H  S  S  V  W  A  S  N  E  G  *  G  N  A  *  E  G  S  L  N  L  F  S  R  R  E  L  M  V  *  C  *  Q  F  H  Q  R  V  K  *  N  L  V  F  F  H  F  I  A  L  *  F  F  C  T  A  L  E  A  S  L  S  F  K  L  S  C  R  N  F  L  W  F  N  I  F  E  S  P  L  R  K  I  A  K  :  Y  T  T  K   </second_frame>
            <third_frame>   H  Q  K  L  R  K  C  Y  D  V  G  S  A  T  G  P  K  F  R  R  A  L  P  K  C  N  G  A  H  Q  P  R  S  W  A  F  L  I  A  H  R  P  Y  S  G  K  F  E  E  N  I  E  V  W  P  C  E  *  L  I  I  P  V  K  L  I  *  K  W  Y  L  K  G  D  I  L  E  D  P  A  N  E  P  M  K  D  M  Y  M  M  S  V  D  P  Q  D  A  P  D  Q  P  E  *  E  S  S  I  L  I  F  L  F  I  V  V  K  R  S  N  A  F  L  S  H  F  Q  S  C  F  *  L  C  R  Y  V  N  I  G  I  V  A  G  I  P  V  S  V  N  G  K  E  L  S  P  A  T  L  L  S  E  L  N  E  I  G  G  R  H  G  I  G  R  I  D  M  V  E  N  R  L  V  G  M  K  S  R  G  V  Y  E  T  P  G  G  T  I  L  F  S  A  V  Q  E  L  E  S  L  T  L  D  R  E  T  I  Q  V  K  D  S  L  A  L  K  Y  A  E  L  V  Y  A  G  R  W  F  D  P  L  R  E  S  M  D  A  F  M  E  N  I  T  K  T  T  T  G  S  V  T  L  K  L  Y  K  G  S  V  S  V  T  G  R  Q  S  P  H  S  L  Y  R  Q  D  I  S  S  F  E  S  G  D  I  Y  N  Q  A  D  A  A  G  F  I  R  L  Y  G  L  P  M  R  V  R  A  M  L  E  K  G  L  *  I  C  F  R  V  V  N  *  W  F  S  V  D  S  S  I  K  G  S  S  R  I  L  F  F  S  I  S  *  H  C  S  F  F  V  R  L  W  R  L  V  Y  R  S  N  C  L  A  E  I  S  S  G  S  I  Y  L  K  V  H  *  E  K  L  L  N :   T  Q  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73519" stop="74079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCRYVNIGIVAGIPVSVNGKELSPATLLSELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMENITKTTTGSVTLKLYKGSVSVTGRQSPHSLYRQDISSFESGDIYNQADAAGFIRLYGLPMRVRAMLEKGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83776" PGL_stop="86422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84959" e_stop="85186"/>
            <exon e_start="85902" e_stop="86422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.838" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84959" e_stop="85186" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.838" acc_prob="0.945">
            <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="85902" e_stop="86422" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84959" stop="85186"/>
              <exon start="85902" stop="86422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84959" stop="85186"/>
              <exon start="85902" stop="86391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84959" stop="85186"/>
              <exon start="85902" stop="86358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84959" stop="85186"/>
              <exon start="85902" stop="86299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84959" stop="85186"/>
              <exon start="85902" stop="86267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCTGAGAATTCTGCTTATATTCTCTTTCATCTTTCTAGAGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG : CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTGAGAAGGTAAAAGTTTAGCCCAGCCTATACATGTTGTGTTCAAAGGAATAGCATTCTACGATCTTGGAGAAACTCTTGTTTATTGGAATTTTAAGTAGGTCCTGGATAATCTTGAAATCAAAGTTGTAATGTATTGGCCTTTAATATATGTTATGTAGGTCAAATTCCAAGTAGGGCTTGATGCCTGTATAGATTTGTCTTTGTTAGAAGGGGAAAATCTAGAGATGTTTGGTACTTTTGAATGCTCCCTTGGGACAAGTGATGTACACTAGGGTTGTACAAGTATTTTATCACCTATTGTCACAACTC</gDNA_template>
            <first_frame> E  L  R  I  L  L  I  F  S  F  I  F  L  E  K  Y  L  L  Q  Q  K  G  G  I  I  R  I  I  T  H  K  D  S  A  G  A  D  I  L  Q  S  F  I  H  A  L  V  M  A  K  L  D  D  Q  D  G  S  M  S  S  E  S  Q  S  W  M  D  K  H  Y  E  V  F  V  L  K  :  L  Q  S  S  G  W  K  T  E  R  L  L  S  S  S  V  V  W  R  A  N  W  L  V  D  Y  S  D  G  K  H  D  *  S  T  S  I  Q  T  K  S  H  L  V  T  V  R  C  F  Q  I  T  T  W  G  D  F  K  S  S  F  S  M  S  W  I  F  Q  *  S  L  R  R  *  K  F  S  P  A  Y  T  C  C  V  Q  R  N  S  I  L  R  S  W  R  N  S  C  L  L  E  F  *  V  G  P  G  *  S  *  N  Q  S  C  N  V  L  A  F  N  I  C  Y  V  G  Q  I  P  S  R  A  *  C  L  Y  R  F  V  F  V  R  R  G  K  S  R  D  V  W  Y  F  *  M  L  P  W  D  K  *  C  T  L  G  L  Y  K  Y  F  I  T  Y  C  H  N   </first_frame>
            <second_frame>  S  *  E  F  C  L  Y  S  L  S  S  F  *  R  N  I  Y  F  N  K  K  G  V  L  S  G  L  L  L  I  R  I  Q  Q  E  L  I  Y  Y  N  H  S  S  M  L  L  S  W  Q  N  *  M  I  K  M  D  P  C  L  R  K  A  N  H  G  W  I  S  I  M  K  S  L  F  *  S :   F  S  H  Q  D  G  R  L  N  V  Y  Y  H  H  Q  S  F  G  E  Q  I  G  W  *  I  I  Q  M  A  N  M  T  S  L  L  Q  Y  K  L  K  V  I  *  L  Q  S  D  A  F  K  L  R  L  G  V  I  S  S  H  H  S  V  C  L  G  S  S  N  D  H  *  E  G  K  S  L  A  Q  P  I  H  V  V  F  K  G  I  A  F  Y  D  L  G  E  T  L  V  Y  W  N  F  K  *  V  L  D  N  L  E  I  K  V  V  M  Y  W  P  L  I  Y  V  M  *  V  K  F  Q  V  G  L  D  A  C  I  D  L  S  L  L  E  G  E  N  L  E  M  F  G  T  F  E  C  S  L  G  T  S  D  V  H  *  G  C  T  S  I  L  S  P  I  V  T  T  </second_frame>
            <third_frame>   A  E  N  S  A  Y  I  L  F  H  L  S  R  E  I  F  T  S  T  K  R  G  Y  Y  Q  D  Y  Y  S  *  G  F  S  R  S  *  Y  I  T  I  I  H  P  C  S  C  H  G  K  T  R  *  S  R  W  I  H  V  F  G  K  P  I  M  D  G  *  A  L  *  S  L  C  F  E   : A  S  V  I  R  M  E  D  *  T  S  T  I  I  I  S  R  L  E  S  K  L  A  G  R  L  F  R  W  Q  T  *  L  V  Y  F  N  T  N  *  K  S  S  S  Y  S  Q  M  L  S  N  Y  D  L  G  *  F  Q  V  I  I  Q  Y  V  L  D  L  P  M  I  I  E  K  V  K  V  *  P  S  L  Y  M  L  C  S  K  E  *  H  S  T  I  L  E  K  L  L  F  I  G  I  L  S  R  S  W  I  I  L  K  S  K  L  *  C  I  G  L  *  Y  M  L  C  R  S  N  S  K  *  G  L  M  P  V  *  I  C  L  C  *  K  G  K  I  *  R  C  L  V  L  L  N  A  P  L  G  Q  V  M  Y  T  R  V  V  Q  V  F  Y  H  L  L  S  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84959" stop="85186"/>
                    <exon start="85902" stop="86000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRILLIFSFIFLEKYLLQQKGGIIRIITHKDSAGADILQSFIHALVMAKLDDQDGSMSSESQSWMDKHYEVFVLKLQSSGWKTERLLSSSVVWRANWLVDYSDGKHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83776" e_stop="83849"/>
            <exon e_start="84175" e_stop="84313"/>
            <exon e_start="84876" e_stop="84916"/>
            <exon e_start="84999" e_stop="85186"/>
            <exon e_start="85902" e_stop="86114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.346" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.562" e_score="1.000"/>
          <exon-intron don_prob="0.595" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83776" e_stop="83849" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.346">
            <gDNA_intron_boundary i_start="83850" i_stop="84174" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84175" e_stop="84313" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.905" acc_prob="0.562">
            <gDNA_intron_boundary i_start="84314" i_stop="84875" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84876" e_stop="84916" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.595" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84917" i_stop="84998" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84999" e_stop="85186" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.838" acc_prob="0.945">
            <gDNA_intron_boundary i_start="85187" i_stop="85901" i_length="715"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85902" e_stop="86114" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83776" stop="83849"/>
              <exon start="84175" stop="84313"/>
              <exon start="84876" stop="84916"/>
              <exon start="84999" stop="85186"/>
              <exon start="85902" stop="86114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCTTTCGCTGAATACTCTGAACTGTGAAAGATGCTCCATTGTTTTATCACATTTCGTCAAGACAGGTCAAG : TTCTCTCTCCAAAGCACGTCTCTTCCATGGAGCACGTTCTACCTTTATGGATGACCTCATGGAACTTAAAGGGTGGTGATTCTCTATACAAGCAAGTACGTTTAGGTGTCAGAGTTTCTTCACTTGACAGCCTTGCTAT : GGTTGACCTATTACAATCTGCTGGATCACATTACAAGAAAG : AGAAATATTTACTTCAACAAAAAGGGGGTATTATCAGGATTATTACTCATAAGGATTCAGCAGGAGCTGATATATTACAATCATTCATCCATGCTCTTGTCATGGCAAAACTAGATGATCAAGATGGATCCATGTCTTCGGAAAGCCAATCATGGATGGATAAGCATTATGAAGTCTTTGTTTTGAAG : CTTCAGTCATCAGGATGGAAGACTGAACGTCTACTATCATCATCAGTCGTTTGGAGAGCAAATTGGCTGGTAGATTATTCAGATGGCAAACATGACTAGTCTACTTCAATACAAACTAAAAGTCATCTAGTTACAGTCAGATGCTTTCAAATTACGACTTGGGGTGATTTCAAGTCATCATTCAGTATGTCTTGGATCTTCCAATGATCATTG</gDNA_template>
            <first_frame> L  S  F  A  E  Y  S  E  L  *  K  M  L  H  C  F  I  T  F  R  Q  D  R  S  S :   S  L  S  K  A  R  L  F  H  G  A  R  S  T  F  M  D  D  L  M  E  L  K  G  W  *  F  S  I  Q  A  S  T  F  R  C  Q  S  F  F  T  *  Q  P  C  Y  :  G  *  P  I  T  I  C  W  I  T  L  Q  E  R :   E  I  F  T  S  T  K  R  G  Y  Y  Q  D  Y  Y  S  *  G  F  S  R  S  *  Y  I  T  I  I  H  P  C  S  C  H  G  K  T  R  *  S  R  W  I  H  V  F  G  K  P  I  M  D  G  *  A  L  *  S  L  C  F  E   : A  S  V  I  R  M  E  D  *  T  S  T  I  I  I  S  R  L  E  S  K  L  A  G  R  L  F  R  W  Q  T  *  L  V  Y  F  N  T  N  *  K  S  S  S  Y  S  Q  M  L  S  N  Y  D  L  G  *  F  Q  V  I  I  Q  Y  V  L  D  L  P  M  I  I  </first_frame>
            <second_frame>  C  L  S  L  N  T  L  N  C  E  R  C  S  I  V  L  S  H  F  V  K  T  G  Q   : V  L  S  P  K  H  V  S  S  M  E  H  V  L  P  L  W  M  T  S  W  N  L  K  G  G  D  S  L  Y  K  Q  V  R  L  G  V  R  V  S  S  L  D  S  L  A  M :   V  D  L  L  Q  S  A  G  S  H  Y  K  K   : E  K  Y  L  L  Q  Q  K  G  G  I  I  R  I  I  T  H  K  D  S  A  G  A  D  I  L  Q  S  F  I  H  A  L  V  M  A  K  L  D  D  Q  D  G  S  M  S  S  E  S  Q  S  W  M  D  K  H  Y  E  V  F  V  L  K  :  L  Q  S  S  G  W  K  T  E  R  L  L  S  S  S  V  V  W  R  A  N  W  L  V  D  Y  S  D  G  K  H  D  *  S  T  S  I  Q  T  K  S  H  L  V  T  V  R  C  F  Q  I  T  T  W  G  D  F  K  S  S  F  S  M  S  W  I  F  Q  *  S  L </second_frame>
            <third_frame>   V  F  R  *  I  L  *  T  V  K  D  A  P  L  F  Y  H  I  S  S  R  Q  V  K  :  F  S  L  Q  S  T  S  L  P  W  S  T  F  Y  L  Y  G  *  P  H  G  T  *  R  V  V  I  L  Y  T  S  K  Y  V  *  V  S  E  F  L  H  L  T  A  L  L   : W  L  T  Y  Y  N  L  L  D  H  I  T  R  K  :  R  N  I  Y  F  N  K  K  G  V  L  S  G  L  L  L  I  R  I  Q  Q  E  L  I  Y  Y  N  H  S  S  M  L  L  S  W  Q  N  *  M  I  K  M  D  P  C  L  R  K  A  N  H  G  W  I  S  I  M  K  S  L  F  *  S :   F  S  H  Q  D  G  R  L  N  V  Y  Y  H  H  Q  S  F  G  E  Q  I  G  W  *  I  I  Q  M  A  N  M  T  S  L  L  Q  Y  K  L  K  V  I  *  L  Q  S  D  A  F  K  L  R  L  G  V  I  S  S  H  H  S  V  C  L  G  S  S  N  D  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83777" stop="83849"/>
                    <exon start="84175" stop="84313"/>
                    <exon start="84876" stop="84916"/>
                    <exon start="84999" stop="85186"/>
                    <exon start="85902" stop="86000"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSLNTLNCERCSIVLSHFVKTGQVLSPKHVSSMEHVLPLWMTSWNLKGGDSLYKQVRLGVRVSSLDSLAMVDLLQSAGSHYKKEKYLLQQKGGIIRIITHKDSAGADILQSFIHALVMAKLDDQDGSMSSESQSWMDKHYEVFVLKLQSSGWKTERLLSSSVVWRANWLVDYSDGKHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90329" PGL_stop="88260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90329" e_stop="90079"/>
            <exon e_start="88752" e_stop="88260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.862" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90079" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.862" acc_prob="0.908">
            <gDNA_intron_boundary i_start="90078" i_stop="88753" i_length="1326"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="88752" e_stop="88260" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90329" stop="90079"/>
              <exon start="88752" stop="88260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCAATAAATATTTATAAGAGAACTAATAAAAATACAAAAACGTAAATTATTAATTTCGTCTCCAAATTATAAATAAACACCTCATGTTTTAAAAATGAATTTAGGAGTTTATTTCCCTTGTCAAAAAATTCAAGACTTTAATTCCCTTAATACATTTAATTAAAAGGACTATTTGATCTATTCTGAAGCCACCGGTGAACTAAGCAGCCGCCGTTATTAGCACATACAGATCGGAAAAACACTCCG : GTCATTGCCATCTTGATGGAAATGCTGATGCTGTGGAGTTTTGTCCACACGAATCGTTTCACAATGTTCTGGCAGCATGTACTTATACTTTACAAGAAGGAGATCAACCTAGTAGAACTGGTAGTATATCCCTGTTTGATGTTGATGCTAATTCGAGTCGCCTTAGTTTGATACATAGAGTACAAACAGCTGGTATATTTGATATAAGATGGAGCCCGATCGGTGGAATTGTGGGGCCATTACTGGCTCAAGCTGATGCTGAGGGTTATGTTAGAGTTCACAAACTTGAATCTTGTTTGGATGAATCACAAGTTCCTGGTATGTTTAAGCATCTCTTGTCGTGTTTTATGTTATATTTATCGTCAAAGGACAAGTGTTACATGAGGGAGAACAAGCCTAATTTAGTTTTTTTATGTTCTTTGAAAACCAAGTTATGCAGTATCTGGAATGAAATGAGTCTAGTGTTGAGAAATGCATCTAGTCTAACTTGGAA</gDNA_template>
            <first_frame> F  F  Q  *  I  F  I  R  E  L  I  K  I  Q  K  R  K  L  L  I  S  S  P  N  Y  K  *  T  P  H  V  L  K  M  N  L  G  V  Y  F  P  C  Q  K  I  Q  D  F  N  S  L  N  T  F  N  *  K  D  Y  L  I  Y  S  E  A  T  G  E  L  S  S  R  R  Y  *  H  I  Q  I  G  K  T  L  R :   S  L  P  S  *  W  K  C  *  C  C  G  V  L  S  T  R  I  V  S  Q  C  S  G  S  M  Y  L  Y  F  T  R  R  R  S  T  *  *  N  W  *  Y  I  P  V  *  C  *  C  *  F  E  S  P  *  F  D  T  *  S  T  N  S  W  Y  I  *  Y  K  M  E  P  D  R  W  N  C  G  A  I  T  G  S  S  *  C  *  G  L  C  *  S  S  Q  T  *  I  L  F  G  *  I  T  S  S  W  Y  V  *  A  S  L  V  V  F  Y  V  I  F  I  V  K  G  Q  V  L  H  E  G  E  Q  A  *  F  S  F  F  M  F  F  E  N  Q  V  M  Q  Y  L  E  *  N  E  S  S  V  E  K  C  I  *  S  N  L  E </first_frame>
            <second_frame>  F  F  N  K  Y  L  *  E  N  *  *  K  Y  K  N  V  N  Y  *  F  R  L  Q  I  I  N  K  H  L  M  F  *  K  *  I  *  E  F  I  S  L  V  K  K  F  K  T  L  I  P  L  I  H  L  I  K  R  T  I  *  S  I  L  K  P  P  V  N  *  A  A  A  V  I  S  T  Y  R  S  E  K  H  S   : G  H  C  H  L  D  G  N  A  D  A  V  E  F  C  P  H  E  S  F  H  N  V  L  A  A  C  T  Y  T  L  Q  E  G  D  Q  P  S  R  T  G  S  I  S  L  F  D  V  D  A  N  S  S  R  L  S  L  I  H  R  V  Q  T  A  G  I  F  D  I  R  W  S  P  I  G  G  I  V  G  P  L  L  A  Q  A  D  A  E  G  Y  V  R  V  H  K  L  E  S  C  L  D  E  S  Q  V  P  G  M  F  K  H  L  L  S  C  F  M  L  Y  L  S  S  K  D  K  C  Y  M  R  E  N  K  P  N  L  V  F  L  C  S  L  K  T  K  L  C  S  I  W  N  E  M  S  L  V  L  R  N  A  S  S  L  T  W   </second_frame>
            <third_frame>   F  S  I  N  I  Y  K  R  T  N  K  N  T  K  T  *  I  I  N  F  V  S  K  L  *  I  N  T  S  C  F  K  N  E  F  R  S  L  F  P  L  S  K  N  S  R  L  *  F  P  *  Y  I  *  L  K  G  L  F  D  L  F  *  S  H  R  *  T  K  Q  P  P  L  L  A  H  T  D  R  K  N  T  P  :  V  I  A  I  L  M  E  M  L  M  L  W  S  F  V  H  T  N  R  F  T  M  F  W  Q  H  V  L  I  L  Y  K  K  E  I  N  L  V  E  L  V  V  Y  P  C  L  M  L  M  L  I  R  V  A  L  V  *  Y  I  E  Y  K  Q  L  V  Y  L  I  *  D  G  A  R  S  V  E  L  W  G  H  Y  W  L  K  L  M  L  R  V  M  L  E  F  T  N  L  N  L  V  W  M  N  H  K  F  L  V  C  L  S  I  S  C  R  V  L  C  Y  I  Y  R  Q  R  T  S  V  T  *  G  R  T  S  L  I  *  F  F  Y  V  L  *  K  P  S  Y  A  V  S  G  M  K  *  V  *  C  *  E  M  H  L  V  *  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90121" stop="90079"/>
                    <exon start="88752" stop="88262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAVISTYRSEKHSGHCHLDGNADAVEFCPHESFHNVLAACTYTLQEGDQPSRTGSISLFDVDANSSRLSLIHRVQTAGIFDIRWSPIGGIVGPLLAQADAEGYVRVHKLESCLDESQVPGMFKHLLSCFMLYLSSKDKCYMRENKPNLVFLCSLKTKLCSIWNEMSLVLRNASSLTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93839" PGL_stop="90844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93839" e_stop="93631"/>
            <exon e_start="93182" e_stop="93044"/>
            <exon e_start="92953" e_stop="92779"/>
            <exon e_start="92436" e_stop="92393"/>
            <exon e_start="92308" e_stop="92211"/>
            <exon e_start="92040" e_stop="91852"/>
            <exon e_start="91765" e_stop="91666"/>
            <exon e_start="91239" e_stop="90844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.326" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93839" e_stop="93631" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93630" i_stop="93183" i_length="448"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93182" e_stop="93044" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.804">
            <gDNA_intron_boundary i_start="93043" i_stop="92954" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92953" e_stop="92779" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="92778" i_stop="92437" i_length="342"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92436" e_stop="92393" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.970">
            <gDNA_intron_boundary i_start="92392" i_stop="92309" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="92308" e_stop="92211" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92210" i_stop="92041" i_length="170"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92040" e_stop="91852" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.326" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91851" i_stop="91766" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91765" e_stop="91666" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91665" i_stop="91240" i_length="426"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="91239" e_stop="90844" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93631"/>
              <exon start="93182" stop="93044"/>
              <exon start="92953" stop="92779"/>
              <exon start="92436" stop="92393"/>
              <exon start="92308" stop="92211"/>
              <exon start="92040" stop="92009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93631"/>
              <exon start="93182" stop="93044"/>
              <exon start="92953" stop="92779"/>
              <exon start="92436" stop="92393"/>
              <exon start="92308" stop="92239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93839" stop="93631"/>
              <exon start="93182" stop="93044"/>
              <exon start="92953" stop="92884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92269" stop="92211"/>
              <exon start="92040" stop="91852"/>
              <exon start="91765" stop="91666"/>
              <exon start="91239" stop="90844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92256" stop="92211"/>
              <exon start="92040" stop="91852"/>
              <exon start="91765" stop="91666"/>
              <exon start="91239" stop="90844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATAGCTTGTATGCTATTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTCTTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG : GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTCGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGTTGGTTTGTCAGTCACTGAAGTTGTCTCTGCCAGTATTACAGTTGTTATAG : GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAATTCTGTTTTCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAACTATTCAAATGACTGTAAAGACGGAGTCAG : GACTAATGGAGTTACTTCCTTCAAACCAACAAATTTTAATCAAG : GTGGTACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCGGCTTTCCTTATAGAACTTGAGAATACGAGATCAATCAAG : GTTCTCGGGAAGGGCACGTTAATTGGTTTGACCATAACATTCTTTGCTGGGATTTGCTTCTCTATGTTCTCGCCTGCATTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATG : AGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATACGCAGCTGCAGACGCTGTTCAG : GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCTATTCTCATGGCATCATCAGGGCATCGCAAATAGCGCGATATAGCATAGTTGTAAGAATATGTTCTTCTGTACATATTATGTTTACATTTCCTTGTTGTCGCGACCCCTAAAAGTAGGGAGAAATAATTTAATCGGAGGAAAAAGGAGGATTGATTTTAGTTAACTCCTCTCATTTTTATGATAGGTATTTGACTCAACACAGAGTTACAAAAATGTTCATTTGGCTTAATGTATTATTGAATGTATTTTCAAGTGTGAGTTCCTGATAATAATTGT</gDNA_template>
            <first_frame> L  *  L  V  C  Y  F  L  C  Y  C  *  G  H  G  Q  L  Y  *  L  Y  S  K  G  E  V  V  F  L  N  I  L  I  L  I  I  P  L  P  I  S  W  L  L  S  S  L  L  *  P  *  V  S  L  G  Q  A  H  Q  K  G  L  I  F  S  L  N  S  L  R :   I  I  G  P  V  S  C  L  Q  W  L  E  G  W  S  S  A  S  G  T  S  Q  L  N  M  L  L  L  S  L  V  C  Q  S  L  K  L  S  L  P  V  L  Q  L  L  *  :  E  Q  P  *  I  I  T  L  T  T  K  L  T  K  L  K  F  C  F  L  E  L  H  A  S  W  L  P  F  V  *  A  L  L  F  I  R  P  T  T  L  I  T  K  P  S  L  I  T  I  Q  M  T  V  K  T  E  S   : G  L  M  E  L  L  P  S  N  Q  Q  I  L  I  K  :  V  V  Q  M  V  W  R  M  E  M  L  L  R  R  Q  N  L  G  L  R  L  S  L  *  N  L  R  I  R  D  Q  S  R :   F  S  G  R  A  R  *  L  V  *  P  *  H  S  L  L  G  F  A  S  L  C  S  R  L  H  S  T  *  P  Q  M  I  N  G  I  L  S  K  M  E  F  H  T  *  L  S  I  Q  H  F  S  T  S  R  A  F  V  S  S  L  P  * :   G  W  A  L  L  A  G  L  V  C  G  F  G  N  G  L  Q  F  M  G  G  Q  A  A  G  Y  A  A  A  D  A  V  Q  :  A  L  P  L  V  S  T  F  W  G  V  M  L  F  G  E  Y  R  R  S  S  R  K  T  Y  T  L  L  A  G  M  L  L  M  F  T  A  A  V  A  I  L  M  A  S  S  G  H  R  K  *  R  D  I  A  *  L  *  E  Y  V  L  L  Y  I  L  C  L  H  F  L  V  V  A  T  P  K  S  R  E  K  *  F  N  R  R  K  K  E  D  *  F  *  L  T  P  L  I  F  M  I  G  I  *  L  N  T  E  L  Q  K  C  S  F  G  L  M  Y  Y  *  M  Y  F  Q  V  *  V  P  D  N  N  C </first_frame>
            <second_frame>  Y  S  L  Y  A  I  F  F  V  I  V  R  D  M  A  S  S  I  D  F  T  R  K  A  R  S  S  S  S  T  Y  L  S  *  L  Y  H  Y  Q  S  L  G  C  C  H  H  C  F  N  H  R  S  V  W  A  K  H  T  R  K  A  *  F  S  H  S  T  L  S   : G  *  L  A  Q  C  L  V  C  N  G  W  R  D  G  P  Q  P  R  E  P  L  N  S  I  C  F  C  F  R  W  F  V  S  H  *  S  C  L  C  Q  Y  Y  S  C  Y  R :   N  N  L  E  L  L  P  *  R  Q  N  *  Q  S  *  N  S  V  F  W  S  C  M  L  L  G  C  R  L  F  R  L  C  C  S  F  V  Q  Q  R  *  *  Q  N  Q  A  *  *  L  F  K  *  L  *  R  R  S  Q  :  D  *  W  S  Y  F  L  Q  T  N  K  F  *  S  R :   W  Y  K  W  F  G  G  W  R  C  F  *  E  G  K  I  W  D  C  G  F  P  Y  R  T  *  E  Y  E  I  N  Q   : G  S  R  E  G  H  V  N  W  F  D  H  N  I  L  C  W  D  L  L  L  Y  V  L  A  C  I  Q  P  S  H  K  *  S  M  A  Y  S  Q  R  W  S  S  T  L  D  C  L  Y  S  I  F  L  L  L  V  L  L  F  H  H  C  H   : E  V  G  P  F  W  L  D  L  C  V  A  L  V  M  V  S  N  S  W  E  V  K  Q  L  D  T  Q  L  Q  T  L  F  R :   H  C  L  L  *  V  H  F  G  G  *  C  C  L  E  N  T  E  D  H  Q  G  K  H  I  H  F  L  Q  A  C  C  *  C  L  Q  Q  L  L  L  F  S  W  H  H  Q  G  I  A  N  S  A  I  *  H  S  C  K  N  M  F  F  C  T  Y  Y  V  Y  I  S  L  L  S  R  P  L  K  V  G  R  N  N  L  I  G  G  K  R  R  I  D  F  S  *  L  L  S  F  L  *  *  V  F  D  S  T  Q  S  Y  K  N  V  H  L  A  *  C  I  I  E  C  I  F  K  C  E  F  L  I  I  I   </second_frame>
            <third_frame>   I  A  C  M  L  F  S  L  L  L  L  G  T  W  P  A  L  L  T  L  L  E  R  R  G  R  L  P  Q  H  T  Y  L  D  Y  T  I  T  N  L  L  A  A  V  I  I  A  L  T  I  G  Q  F  G  P  S  T  P  E  R  P  N  F  L  T  Q  L  S  Q  :  D  N  W  P  S  V  L  F  A  M  A  G  G  M  V  L  S  L  G  N  L  S  T  Q  Y  A  F  A  F  V  G  L  S  V  T  E  V  V  S  A  S  I  T  V  V  I   : G  T  T  L  N  Y  Y  L  D  D  K  I  N  K  A  E  I  L  F  S  G  V  A  C  F  L  V  A  V  C  L  G  S  A  V  H  S  S  N  N  A  D  N  K  T  K  L  D  N  Y  S  N  D  C  K  D  G  V  R :   T  N  G  V  T  S  F  K  P  T  N  F  N  Q   : G  G  T  N  G  L  E  D  G  D  A  S  E  K  A  K  F  G  T  A  A  F  L  I  E  L  E  N  T  R  S  I  K  :  V  L  G  K  G  T  L  I  G  L  T  I  T  F  F  A  G  I  C  F  S  M  F  S  P  A  F  N  L  A  T  N  D  Q  W  H  T  L  K  D  G  V  P  H  L  T  V  Y  T  A  F  F  Y  F  S  C  F  C  F  I  I  A  M  :  R  L  G  P  F  G  W  T  C  V  W  L  W  *  W  S  P  I  H  G  R  S  S  S  W  I  R  S  C  R  R  C  S   : G  I  A  S  C  E  Y  I  L  G  G  D  V  V  W  R  I  Q  K  I  I  K  E  N  I  Y  T  S  C  R  H  V  V  N  V  Y  S  S  C  C  Y  S  H  G  I  I  R  A  S  Q  I  A  R  Y  S  I  V  V  R  I  C  S  S  V  H  I  M  F  T  F  P  C  C  R  D  P  *  K  *  G  E  I  I  *  S  E  E  K  G  G  L  I  L  V  N  S  S  H  F  Y  D  R  Y  L  T  Q  H  R  V  T  K  M  F  I  W  L  N  V  L  L  N  V  F  S  S  V  S  S  *  *  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93837" stop="93631"/>
                    <exon start="93182" stop="93044"/>
                    <exon start="92953" stop="92779"/>
                    <exon start="92436" stop="92393"/>
                    <exon start="92308" stop="92211"/>
                    <exon start="92040" stop="91852"/>
                    <exon start="91765" stop="91724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IACMLFSLLLLGTWPALLTLLERRGRLPQHTYLDYTITNLLAAVIIALTIGQFGPSTPERPNFLTQLSQDNWPSVLFAMAGGMVLSLGNLSTQYAFAFVGLSVTEVVSASITVVIGTTLNYYLDDKINKAEILFSGVACFLVAVCLGSAVHSSNNADNKTKLDNYSNDCKDGVRTNGVTSFKPTNFNQGGTNGLEDGDASEKAKFGTAAFLIELENTRSIKVLGKGTLIGLTITFFAGICFSMFSPAFNLATNDQWHTLKDGVPHLTVYTAFFYFSCFCFIIAMRLGPFGWTCVWLW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91723" stop="91666"/>
                    <exon start="91239" stop="91010"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSPIHGRSSSWIRSCRRCSGIASCEYILGGDVVWRIQKIIKENIYTSCRHVVNVYSSCCYSHGIIRASQIARYSIVVRICSSVHIMFTFPCCRDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="104684" PGL_stop="100707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104684" e_stop="104585"/>
            <exon e_start="103768" e_stop="103466"/>
            <exon e_start="103015" e_stop="102877"/>
            <exon e_start="102786" e_stop="102612"/>
            <exon e_start="102274" e_stop="102231"/>
            <exon e_start="102146" e_stop="102049"/>
            <exon e_start="101839" e_stop="101465"/>
            <exon e_start="100968" e_stop="100707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.582" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.997"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104684" e_stop="104585" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.968">
            <gDNA_intron_boundary i_start="104584" i_stop="103769" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103768" e_stop="103466" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103465" i_stop="103016" i_length="450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103015" e_stop="102877" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.582">
            <gDNA_intron_boundary i_start="102876" i_stop="102787" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102786" e_stop="102612" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.980">
            <gDNA_intron_boundary i_start="102611" i_stop="102275" i_length="337"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102274" e_stop="102231" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.906">
            <gDNA_intron_boundary i_start="102230" i_stop="102147" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="102146" e_stop="102049" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102048" i_stop="101840" i_length="209"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="101839" e_stop="101465" e_length="375"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101464" i_stop="100969" i_length="496"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="100968" e_stop="100707" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104684" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102612"/>
              <exon start="102274" stop="102231"/>
              <exon start="102146" stop="102089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104664" stop="104585"/>
              <exon start="103768" stop="103525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104638" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104635" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104632" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102612"/>
              <exon start="102274" stop="102231"/>
              <exon start="102146" stop="102130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104632" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104620" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104617" stop="104585"/>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103768" stop="103466"/>
              <exon start="103015" stop="102983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103634" stop="103466"/>
              <exon start="103015" stop="102877"/>
              <exon start="102786" stop="102612"/>
              <exon start="102274" stop="102231"/>
              <exon start="102146" stop="102049"/>
              <exon start="101839" stop="101616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102129" stop="102049"/>
              <exon start="101839" stop="101465"/>
              <exon start="100968" stop="100707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102103" stop="102049"/>
              <exon start="101839" stop="101465"/>
              <exon start="100968" stop="100757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101690" stop="101465"/>
              <exon start="100968" stop="100707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101559" stop="101465"/>
              <exon start="100968" stop="100707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTCAAAAAGATTCAAATTTTGGTGTGCATTTTGAAGTTCCCATTGTTGTTAAAAGTGGTGTTCTTGATAATTTTTTGGGTGGGGGTCCTTTAATAG : GATTATTGGATCCTTACCAAGGTGGCAGTTCTTTCACCACAAAGGGTCTTATCTAGTGGATTCAAGATGTATATGGTTGAAAGCAAAGATGGTGCTATAGTTTGTATGCTACTTTCTTTGTTATTGTTAGGGACATGGCCAGCTCTATTGACTTTACTCGAAAGGCGAGGTCGTCTTCCTCAACATACTTATCTTGATTATACCATTACCAATCTATTGGCTGCTGTCATCATTGCTTTAACCATAGGTCAGTTTGGGCCAAGCACACCAGAAAGGCCTAATTTTCTCACTCAACTCTCTCAG : GATAATTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATGGTCCTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAG : GAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTAGGCTCTGCTGTTCATTCGTCCAACAACGCTGATAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAG : GACTGATGGAGTTACTTCCTTCAAACCTACAGATTTTAATCAAG : GTGGCACAAATGGTTTGGAGGATGGAGATGCTTCTGAGAAGGCAAAATTTGGGACTGCAGCTTTCCTTATAGAACTTGAGAATATGAGATCAATCAAG : GTTCTCGGGAAGGGCACGTTAATTGGTTTGATCATAACATTCTTTGCTGGGATTTGTTTCTCTATGTTCTCGCCTGCGTTCAACCTAGCCACAAATGATCAATGGCATACTCTCAAAGATGGAGTTCCACACTTGACTGTCTATACAGCATTTTTCTACTTCTCGTGCTTTTGTTTCATCATTGCCATGGTTTTGAACCTCTACTTCTTGTACCACCCTATACTAAATGCACCCAAGTCATCGTTCACGGCTTATCTCAACGACTGGAATGGCAGAGGTTGGGCCCTTTTGGCTGGACTTGTGTGTGGCTTTGGTAATGGTCTCCAATTCATGGGAGGTCAAGCAGCTGGATATGCAGCTGCAGACGCTGTTCAG : GCATTGCCTCTTGTGAGTACATTTTGGGGGGTGATGTTGTTTGGAGAATACAGAAGATCATCAAGGAAAACATATACACTTCTTGCAGGCATGTTGTTAATGTTTACAGCAGCTGTTGCAGTTCTCATGGCATCGTCAGGGCATCGCAAATAGCGCGATATAGCATAGCTCCAAGAATATGTTCTTGTGTACATATTATGTGTTATCTCATGTATTTAAATTAACCAGAAGAAATAAAAGATGAAAAGAAAAATACAAAGAA</gDNA_template>
            <first_frame> I  L  Q  K  D  S  N  F  G  V  H  F  E  V  P  I  V  V  K  S  G  V  L  D  N  F  L  G  G  G  P  L  I   : G  L  L  D  P  Y  Q  G  G  S  S  F  T  T  K  G  L  I  *  W  I  Q  D  V  Y  G  *  K  Q  R  W  C  Y  S  L  Y  A  T  F  F  V  I  V  R  D  M  A  S  S  I  D  F  T  R  K  A  R  S  S  S  S  T  Y  L  S  *  L  Y  H  Y  Q  S  I  G  C  C  H  H  C  F  N  H  R  S  V  W  A  K  H  T  R  K  A  *  F  S  H  S  T  L  S   : G  *  L  A  Q  C  L  V  C  N  G  W  R  D  G  P  Q  P  W  E  P  L  N  S  I  C  F  C  F  R  W  F  V  S  H  R  S  C  L  F  Q  H  Y  S  C  Y  R :   N  N  L  E  L  L  P  *  R  Q  N  *  Q  S  *  S  S  V  S  W  S  C  M  L  L  G  C  R  L  F  R  L  C  C  S  F  V  Q  Q  R  *  *  Q  N  Q  A  *  *  L  F  K  *  L  *  R  R  S  Q  :  D  *  W  S  Y  F  L  Q  T  Y  R  F  *  S  R :   W  H  K  W  F  G  G  W  R  C  F  *  E  G  K  I  W  D  C  S  F  P  Y  R  T  *  E  Y  E  I  N  Q   : G  S  R  E  G  H  V  N  W  F  D  H  N  I  L  C  W  D  L  F  L  Y  V  L  A  C  V  Q  P  S  H  K  *  S  M  A  Y  S  Q  R  W  S  S  T  L  D  C  L  Y  S  I  F  L  L  L  V  L  L  F  H  H  C  H  G  F  E  P  L  L  L  V  P  P  Y  T  K  C  T  Q  V  I  V  H  G  L  S  Q  R  L  E  W  Q  R  L  G  P  F  G  W  T  C  V  W  L  W  *  W  S  P  I  H  G  R  S  S  S  W  I  C  S  C  R  R  C  S   : G  I  A  S  C  E  Y  I  L  G  G  D  V  V  W  R  I  Q  K  I  I  K  E  N  I  Y  T  S  C  R  H  V  V  N  V  Y  S  S  C  C  S  S  H  G  I  V  R  A  S  Q  I  A  R  Y  S  I  A  P  R  I  C  S  C  V  H  I  M  C  Y  L  M  Y  L  N  *  P  E  E  I  K  D  E  K  K  N  T  K   </first_frame>
            <second_frame>  F  F  K  K  I  Q  I  L  V  C  I  L  K  F  P  L  L  L  K  V  V  F  L  I  I  F  W  V  G  V  L  *  *  :  D  Y  W  I  L  T  K  V  A  V  L  S  P  Q  R  V  L  S  S  G  F  K  M  Y  M  V  E  S  K  D  G  A  I  V  C  M  L  L  S  L  L  L  L  G  T  W  P  A  L  L  T  L  L  E  R  R  G  R  L  P  Q  H  T  Y  L  D  Y  T  I  T  N  L  L  A  A  V  I  I  A  L  T  I  G  Q  F  G  P  S  T  P  E  R  P  N  F  L  T  Q  L  S  Q  :  D  N  W  P  S  V  L  F  A  M  A  G  G  M  V  L  S  L  G  N  L  S  T  Q  Y  A  F  A  F  A  G  L  S  V  T  V  V  V  S  S  S  I  T  V  V  I   : G  T  T  L  N  Y  Y  L  D  D  K  I  N  K  A  E  V  L  F  P  G  V  A  C  F  L  V  A  V  C  L  G  S  A  V  H  S  S  N  N  A  D  N  K  T  K  L  D  N  Y  S  N  D  C  K  D  G  V  R :   T  D  G  V  T  S  F  K  P  T  D  F  N  Q   : G  G  T  N  G  L  E  D  G  D  A  S  E  K  A  K  F  G  T  A  A  F  L  I  E  L  E  N  M  R  S  I  K  :  V  L  G  K  G  T  L  I  G  L  I  I  T  F  F  A  G  I  C  F  S  M  F  S  P  A  F  N  L  A  T  N  D  Q  W  H  T  L  K  D  G  V  P  H  L  T  V  Y  T  A  F  F  Y  F  S  C  F  C  F  I  I  A  M  V  L  N  L  Y  F  L  Y  H  P  I  L  N  A  P  K  S  S  F  T  A  Y  L  N  D  W  N  G  R  G  W  A  L  L  A  G  L  V  C  G  F  G  N  G  L  Q  F  M  G  G  Q  A  A  G  Y  A  A  A  D  A  V  Q  :  A  L  P  L  V  S  T  F  W  G  V  M  L  F  G  E  Y  R  R  S  S  R  K  T  Y  T  L  L  A  G  M  L  L  M  F  T  A  A  V  A  V  L  M  A  S  S  G  H  R  K  *  R  D  I  A  *  L  Q  E  Y  V  L  V  Y  I  L  C  V  I  S  C  I  *  I  N  Q  K  K  *  K  M  K  R  K  I  Q  R  </second_frame>
            <third_frame>   S  S  K  R  F  K  F  W  C  A  F  *  S  S  H  C  C  *  K  W  C  S  *  *  F  F  G  W  G  S  F  N  R :   I  I  G  S  L  P  R  W  Q  F  F  H  H  K  G  S  Y  L  V  D  S  R  C  I  W  L  K  A  K  M  V  L  *  F  V  C  Y  F  L  C  Y  C  *  G  H  G  Q  L  Y  *  L  Y  S  K  G  E  V  V  F  L  N  I  L  I  L  I  I  P  L  P  I  Y  W  L  L  S  S  L  L  *  P  *  V  S  L  G  Q  A  H  Q  K  G  L  I  F  S  L  N  S  L  R :   I  I  G  P  V  S  C  L  Q  W  L  E  G  W  S  S  A  L  G  T  S  Q  L  N  M  L  L  L  S  L  V  C  Q  S  P  *  L  S  L  P  A  L  Q  L  L  *  :  E  Q  P  *  I  I  T  L  T  T  K  L  T  K  L  K  F  C  F  L  E  L  H  A  S  W  L  P  F  V  *  A  L  L  F  I  R  P  T  T  L  I  T  K  P  S  L  I  I  I  Q  M  T  V  K  T  E  S   : G  L  M  E  L  L  P  S  N  L  Q  I  L  I  K  :  V  A  Q  M  V  W  R  M  E  M  L  L  R  R  Q  N  L  G  L  Q  L  S  L  *  N  L  R  I  *  D  Q  S  R :   F  S  G  R  A  R  *  L  V  *  S  *  H  S  L  L  G  F  V  S  L  C  S  R  L  R  S  T  *  P  Q  M  I  N  G  I  L  S  K  M  E  F  H  T  *  L  S  I  Q  H  F  S  T  S  R  A  F  V  S  S  L  P  W  F  *  T  S  T  S  C  T  T  L  Y  *  M  H  P  S  H  R  S  R  L  I  S  T  T  G  M  A  E  V  G  P  F  W  L  D  L  C  V  A  L  V  M  V  S  N  S  W  E  V  K  Q  L  D  M  Q  L  Q  T  L  F  R :   H  C  L  L  *  V  H  F  G  G  *  C  C  L  E  N  T  E  D  H  Q  G  K  H  I  H  F  L  Q  A  C  C  *  C  L  Q  Q  L  L  Q  F  S  W  H  R  Q  G  I  A  N  S  A  I  *  H  S  S  K  N  M  F  L  C  T  Y  Y  V  L  S  H  V  F  K  L  T  R  R  N  K  R  *  K  E  K  Y  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103768" stop="103466"/>
                    <exon start="103015" stop="102877"/>
                    <exon start="102786" stop="102612"/>
                    <exon start="102274" stop="102231"/>
                    <exon start="102146" stop="102049"/>
                    <exon start="101839" stop="101465"/>
                    <exon start="100968" stop="100816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYWILTKVAVLSPQRVLSSGFKMYMVESKDGAIVCMLLSLLLLGTWPALLTLLERRGRLPQHTYLDYTITNLLAAVIIALTIGQFGPSTPERPNFLTQLSQDNWPSVLFAMAGGMVLSLGNLSTQYAFAFAGLSVTVVVSSSITVVIGTTLNYYLDDKINKAEVLFPGVACFLVAVCLGSAVHSSNNADNKTKLDNYSNDCKDGVRTDGVTSFKPTDFNQGGTNGLEDGDASEKAKFGTAAFLIELENMRSIKVLGKGTLIGLIITFFAGICFSMFSPAFNLATNDQWHTLKDGVPHLTVYTAFFYFSCFCFIIAMVLNLYFLYHPILNAPKSSFTAYLNDWNGRGWALLAGLVCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVMLFGEYRRSSRKTYTLLAGMLLMFTAAVAVLMASSGHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="116617" PGL_stop="113181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116617" e_stop="116380"/>
            <exon e_start="114876" e_stop="114756"/>
            <exon e_start="114655" e_stop="114588"/>
            <exon e_start="114438" e_stop="114379"/>
            <exon e_start="114299" e_stop="114141"/>
            <exon e_start="113818" e_stop="113672"/>
            <exon e_start="113326" e_stop="113181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.153" e_score="1.000"/>
          <exon-intron don_prob="0.618" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116617" e_stop="116380" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.153">
            <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114876" e_stop="114756" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.618" acc_prob="0.975">
            <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114655" e_stop="114588" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114438" e_stop="114379" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114299" e_stop="114141" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113818" e_stop="113672" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="113326" e_stop="113181" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116617" stop="116380"/>
              <exon start="114876" stop="114756"/>
              <exon start="114655" stop="114588"/>
              <exon start="114438" stop="114379"/>
              <exon start="114299" stop="114141"/>
              <exon start="113818" stop="113672"/>
              <exon start="113326" stop="113258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116543" stop="116380"/>
              <exon start="114876" stop="114756"/>
              <exon start="114655" stop="114588"/>
              <exon start="114438" stop="114379"/>
              <exon start="114299" stop="114141"/>
              <exon start="113818" stop="113672"/>
              <exon start="113326" stop="113181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCGTTTACCGAGAAAAAGATAATTATTTATTTGAATTTAGACAAAAATATAAATTCTATTTTGGAGTGCTAAGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTG : ATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAG : GTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTG : GTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAA : GTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAG : ATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG : GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAAAAAGACAGTGCTAGGAA</gDNA_template>
            <first_frame> L  P  F  T  E  K  K  I  I  I  Y  L  N  L  D  K  N  I  N  S  I  L  E  C  *  E  S  K  K  *  N  K  I  I  R  H  G  C  A  A  T  A  E  T  T  R  C  S  S  S  P  K  V  R  R  R  Q  G  W  R  R  R  L  H  S  Y  S  H  C  A  R  C  F  H  L  H  F  R  I   : D  C  G  S  F  Y  F  N  I  K  *  *  C  I  H  F  T  P  S  A  G  R  S  C  W  S  L  L  E  R  R  C  P  F  K  Y  N  N  *  S  R :   F  S  F  E  T  A  L  Y  N  S  V  *  T  H  T  S  Y  S  S  N  R  S   : G  E  G  Y  S  L  R  N  Q  R  R  R  D  D  Q  L  *  E  N  R   : S  C  *  P  P  S  E  G  P  R  V  R  Y  S  A  E  L  W  G  Q  L  *  *  Y  M  D  I  R  Q  D  P  P  *  D  Q  S  V  L  Q  C  S  Q  P  S  T  S  L  Y  R  H  V  *  S   : D  R  *  K  N  E  R  C  T  S  G  *  L  H  T  I  R  S  R  Y  *  D  S  Q  C  T  Y  Y  K  T  Q  H  P  R  E  H  K  T  K  F  *  E  H  G  T  G  A  H  Q   : G  L  D  C  S  R  E  T  K  S  C  *  E  G  S  R  D  A  E  K  D  S  N  *  *  S  *  K  K  C  S  C  *  *  D  P  N  G  T  E  V  D  G  K  R  Q  C  *  E </first_frame>
            <second_frame>  F  R  L  P  R  K  R  *  L  F  I  *  I  *  T  K  I  *  I  L  F  W  S  A  K  K  A  K  N  K  I  K  *  S  A  M  D  A  Q  Q  Q  Q  R  Q  Q  G  V  P  A  R  P  R  S  G  A  G  R  D  G  G  G  D  F  T  P  I  L  T  V  L  V  A  F  I  S  I  F  A  L  :  I  V  A  P  S  I  S  T  L  N  N  S  V  S  I  L  H  Q  V  P  E  G  H  V  G  V  Y  W  R  G  G  A  L  L  N  T  I  T  D  P   : G  F  H  L  K  L  P  F  I  T  Q  F  E  P  I  Q  V  T  L  Q  T  D  L  :  V  R  D  I  P  C  G  T  K  G  G  V  M  I  N  F  E  K  I  E  :  V  V  N  R  L  R  K  D  H  V  Y  D  T  L  L  N  Y  G  V  N  Y  D  N  T  W  I  Y  D  K  I  H  H  E  I  N  Q  F  C  S  A  H  S  L  Q  Q  V  Y  I  D  M  F  D  Q  :  I  D  E  K  M  K  D  A  L  Q  A  D  C  T  R  Y  A  P  G  I  E  I  L  S  V  R  I  T  K  P  S  I  P  E  S  I  R  R  N  F  E  N  M  E  Q  E  R  T  K  :  V  L  I  A  V  E  R  Q  R  V  A  E  K  E  A  E  T  Q  K  K  I  A  I  S  E  A  E  R  N  A  H  V  S  K  I  Q  M  E  Q  K  L  M  E  K  D  S  A  R   </second_frame>
            <third_frame>   S  V  Y  R  E  K  D  N  Y  L  F  E  F  R  Q  K  Y  K  F  Y  F  G  V  L  R  K  Q  K  I  K  *  N  N  P  P  W  M  R  S  N  S  R  D  N  K  V  F  Q  L  A  Q  G  P  A  P  A  G  M  A  A  E  T  S  L  L  F  S  L  C  S  L  L  S  S  P  F  S  H  * :   L  W  L  L  L  F  Q  H  *  I  I  V  Y  P  F  Y  T  K  C  R  K  V  M  L  E  S  I  G  E  E  V  P  F  *  I  Q  *  L  I  Q  :  V  F  I  *  N  C  P  L  *  L  S  L  N  P  Y  K  L  L  F  K  Q  I  W :   *  G  I  F  L  A  E  P  K  E  A  *  *  S  T  L  R  K  *  K :   L  L  T  A  F  G  R  T  T  C  T  I  L  C  *  I  M  G  S  I  M  I  I  H  G  Y  T  T  R  S  T  M  R  S  I  S  S  A  V  L  T  A  F  N  K  F  I  S  T  C  L  I  R :   S  M  K  K  *  K  M  H  F  R  L  T  A  H  D  T  L  Q  V  L  R  F  S  V  Y  V  L  Q  N  P  A  S  Q  R  A  *  D  E  I  L  R  T  W  N  R  S  A  P  R :   S  *  L  Q  *  R  D  K  E  L  L  R  R  K  Q  R  R  R  K  R  *  Q  L  V  K  L  K  E  M  L  M  L  V  R  S  K  W  N  R  S  *  W  K  K  T  V  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116517" stop="116380"/>
                    <exon start="114876" stop="114756"/>
                    <exon start="114655" stop="114588"/>
                    <exon start="114438" stop="114379"/>
                    <exon start="114299" stop="114141"/>
                    <exon start="113818" stop="113672"/>
                    <exon start="113326" stop="113183"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAMDAQQQQRQQGVPARPRSGAGRDGGGDFTPILTVLVAFISIFALIVAPSISTLNNSVSILHQVPEGHVGVYWRGGALLNTITDPGFHLKLPFITQFEPIQVTLQTDLVRDIPCGTKGGVMINFEKIEVVNRLRKDHVYDTLLNYGVNYDNTWIYDKIHHEINQFCSAHSLQQVYIDMFDQIDEKMKDALQADCTRYAPGIEILSVRITKPSIPESIRRNFENMEQERTKVLIAVERQRVAEKEAETQKKIAISEAERNAHVSKIQMEQKLMEKDSAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 173 chains have been computed
$ 
$ memory statistics:
$ 413912 bytes spliced alignments in total
$ 61 spliced alignments have been stored
$ 6785 bytes was the average size of a spliced alignment
$ 23304 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1664 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 204 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:29:31
-->
