<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:36:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M14-R" ref_strand="+" ref_description="SGN-M14-R TG503-R [rflp_markers_reverse]">
      <seq>ttcaaaaagtaaaagctagtcattaatatattgtccatgagaagactaataggcttcagaatgcctaaccatgtcaaatctaggaagttcactaaggaaaaggagaaaaatgctgaaagttggggaaatgaaggaaaacagtgtcaaactttcttattattatgagaggaatttagtcaacaaaaaagaaaagaaactatcttctctaaatagatggctaaacagctccagattacacggcctaattttcaactaaaacccatagccattagatgtccttttagtacccatcttatgatactaaacatgttgaccagctgccttgctgactatggtaagggtcaacttgaaagttcaatcatatcagcacacatggtaatttggtgtaattctatgatatcacgggatgtacttttaagaatccaaagcaagtaaccatacctagggattaaccatttaacattgttgcatcaaggctcatgtatagtttaggcaacagccgacttggtttagctcttgctctccttctttggaccagtgttttaggcagcgaaaggcgacaagggcctgcctcgccttgcggcgctcgccttcttgatttgccccaaaatctagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="52619" stop="53837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52919" g_stop="53537" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-M14-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M14-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52919" e_stop="53537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAAGTAAAAGCTAGTCATTAATATATTGTCCATGAGAAGACTAATAGGCTTCAGAATGCCTAACCATGTCAAATCTAGGAAGTTCACTAAGGAAAAGGAGAAAAATGCTGAAAGTTGGGGAAATGAAGGAAAACAGTGTCAAACTTTCTTATTATTATGAGAGGAATTTAGTCAACAAAAAAGAAAAGAAACTATCTTCTCTAAATAGATGGCTAAACAGCTCCAGATTACACGGCCTAATTTTCAACTAAAACCCATAGCCATTAGATGTCCTTTTAGTACCCATCTTATGATACTAAACATGTTGACCAGCTGCCTTGCTGACTATGGTAAGGGTCAACTTGAAAGTTCAATCATATCAGCACACATGGTAATTTGGTGTAATTCTATGATATCACGGGATGTACTTTTAAGAATCCAAAGCAAGTAACCATACCTAGGGATTAACCATTTAACATTGTTGCATCAAGGCTCATGTATAGTTTAGGCAACAGCCGACTTGGTTTAGCTCTTGCTCTCCTTCTTTGGACCAGTGTTTTAGGCAGCGAAAGGCGACAAGGGCCTGCCTCGCCTTGCGGCGCTCGCCTTCTTGATTTGCCCCAAAATCTAGTTCA</genome_strand>
        <mrna_strand>TTCAAAAAGTAAAAGCTAGTCATTAATATATTGTCCATGAGAAGACTAATAGGCTTCAGAATGCCTAACCATGTCAAATCTAGGAAGTTCACTAAGGAAAAGGAGAAAAATGCTGAAAGTTGGGGAAATGAAGGAAAACAGTGTCAAACTTTCTTATTATTATGAGAGGAATTTAGTCAACAAAAAAGAAAAGAAACTATCTTCTCTAAATAGATGGCTAAACAGCTCCAGATTACACGGCCTAATTTTCAACTAAAACCCATAGCCATTAGATGTCCTTTTAGTACCCATCTTATGATACTAAACATGTTGACCAGCTGCCTTGCTGACTATGGTAAGGGTCAACTTGAAAGTTCAATCATATCAGCACACATGGTAATTTGGTGTAATTCTATGATATCACGGGATGTACTTTTAAGAATCCAAAGCAAGTAACCATACCTAGGGATTAACCATTTAACATTGTTGCATCAAGGCTCATGTATAGTTTAGGCAACAGCCGACTTGGTTTAGCTCTTGCTCTCCTTCTTTGGACCAGTGTTTTAGGCAGCGAAAGGCGACAAGGGCCTGCCTCGCCTTGCGGCGCTCGCCTTCTTGATTTGCCCCAAAATCTAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M14-F" ref_strand="+" ref_description="SGN-M14-F TG503-F [rflp_markers_forward]">
      <seq>cactatactagtaatatataatatgcagtaggttatatttgattaattatttgtctttcacttgtctctacacttggtgctgagtagatgtttgaacttcaagtcaaagctatgccatgaaggcgataatggaactagtatgactgagttagttgcttagcaccagctcaaagtagacctccaaacaatcaactctgattttttgatgatgtaaggtgttgcataactcgcatcaagaagatgcgaaatagtacaaaagaggttagcgaactccagttacaaacaaaatacatttacagtcagggagttaaccaatagaaccaaaaagcctataggttgcgcaatcatgccaaagtagagatctaataaaatctagaaatgggataatattattaaggggaaagattgctccaactataaagattcctaagacatttggctttcagggaactattgggagttgaaataccatcaaagcatttccaactcgtttctgtccaaatacaccaaaatatacatactaggatcatctgcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="55032" stop="53894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54732" g_stop="54195" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-M14-F" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M14-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54732" e_stop="54195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAGCTAGTAATATATAATATGCAGTAGGTTATATTTGATTAATTATTTGTCTTTCACTTGTCTCTACACTTGGTGCTGAGTAGATGTTTGAACTTCAAGTCAAAGCTATGCCATGAAGGCGATAATGGAACTAGTATGACTGAGTTAGTTGCTTAGCACCAGCTCAAAGTAGACCTCCAAACAATCAACTCTGATTTTTTGATGATGTAAGGTGTTGCATAACTCGCATCAAGAAGATGCGAAATAGTACAAAAGAGGTTAGCGAACTCCAGTTACAAACAAAATACATTTACAGTCAGGGAGTTAACCAATAGAACCAAAAAGCCTATAGGTTGCGCAATCATGCCAAAGTAGAGATCTAATAAAATCTAGAAATGGGATAATATTATTAAGGGGAAAGATTGCTCCAACTATAAAGATTCCTAAGACATTTGGCTTTCAGGGAACTATTGGGAGTTGAAATACCATCAAAGCATTTCCAACTCGTTTCTGTCCAAATACACCAAAATATACATACTAGGATCATCTGCCTG</genome_strand>
        <mrna_strand>CACTATA-CTAGTAATATATAATATGCAGTAGGTTATATTTGATTAATTATTTGTCTTTCACTTGTCTCTACACTTGGTGCTGAGTAGATGTTTGAACTTCAAGTCAAAGCTATGCCATGAAGGCGATAATGGAACTAGTATGACTGAGTTAGTTGCTTAGCACCAGCTCAAAGTAGACCTCCAAACAATCAACTCTGATTTTTTGATGATGTAAGGTGTTGCATAACTCGCATCAAGAAGATGCGAAATAGTACAAAAGAGGTTAGCGAACTCCAGTTACAAACAAAATACATTTACAGTCAGGGAGTTAACCAATAGAACCAAAAAGCCTATAGGTTGCGCAATCATGCCAAAGTAGAGATCTAATAAAATCTAGAAATGGGATAATATTATTAAGGGGAAAGATTGCTCCAACTATAAAGATTCCTAAGACATTTGGCTTTCAGGGAACTATTGGGAGTTGAAATACCATCAAAGCATTTCCAACTCGTTTCTGTCCAAATACACCAAAATATACATACTAGGATCATCTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8358" ref_strand="+" ref_description="SGN-M8358 C2_At4g24830 [cosii_markers]">
      <seq>gaaactaacacatcaaaaattaagaaaatgttatgacgtaggctctgccactgggccaaaatttagacgggcacttccaaagtgcaatggagcccaccaacctaggtcatgggccttcctgatcgcccatcgaccctattcaggtaaatttgaagaaaatattgaagtatggccatgtgaataactgattatacctgtaaaactcatttgaaaatggtatttgaagggagatattcttgaggaccctgcaaatgagccaatgaaggatatgtatatgatgtcagttgatccccaagatgcacctgatcaacctgagtatgtgaacattgggatagttgctggtattcctgtttcagtaaatggaaaggagctctctcctgcaactcttctttctgagctaaatgaaattggcggaagacatggaattggacgaatagacatggttgaaaataggcttgttggaatgaagagccgtggagtatatgaaacccctgggggaactatccttttctcagctgtgcaagaacttgagtctcttacacttgatcgtgaaacaatccaagtcaaggattctctcgccctcaaatatgcagaattagtttatgctggcaggtggtttgatccacttcgcgagtcaatggatgctttcatggagaatattaccaaaactacaacaggttcagttactctcaaactatacaaaggatcagtttcagtgacaggtcgtcaaagtcctcacagtttgtacagacaagatatctcatcattcgagagtggggatatctacaatcaagccgatgctgcaggattcattcgtctgtatgggcttccaatgagggttagggcaatgcttgagaagggtctttaaattttttttcgcgtcgtgaattgatggtttagtgttgacagttccatcaaagggtcaagtagaatcttgtttttttccatttcatagcactgtagtttttttgtacggctttggaggctagtttatcgttncaattgtcttgcagaaatttcctctggttcaatatatttgaaagtccattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="72819" stop="74568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73119" g_stop="73433" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73527" g_stop="74268" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="1057" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-M8358" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1057</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73119" e_stop="73433"/>
          <exon e_start="73527" e_stop="74268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGAGTGAGAATCTTCTATTTTGATTTTCTTATTTATTGTAGTAAAAAGATCTAATGCATTTCTTTCTCACTTTCAAAGCTGCTTCTAACTGTGCAGGTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAA</genome_strand>
        <mrna_strand>GAAACTAACACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA.............................................................................................GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTTTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTNCAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7154" ref_strand="+" ref_description="SGN-M7154 C2_At2g03510 [cosii_markers]">
      <seq>atttacaattagacaataaaatactacaaaattcaacttagagtgctaagcaagcaaaaaccgccatggatgcacagcaacagcagcgacaacaaggtattcctaaccgtccaaggcacggcggcgatggtggcggcggagacttcactcctattctcactgtgctggttgctttcatcgccattttcgcattggttgtggctccttctgtgtcgacattaaataacagtttatccattttacatcaagtccccgaaggtcatgttggtgtctattggagaggaggtgcccttttaagtacaataactgatccaggttttcatttgaaactgccctttataactcagtttgagcccattcaagttactcttcaaacagatctggtgagggatattccatgtggaaccaaaggaggtgtgatgatcaactttgagaaaatagaagttgttaaccgtcttcggaaggaccatgtgtacgacactctgctgaattatggggtcaattatgataacacatggatatacgacaagatccaccatgagatcaatcagttctgtagtgctcacagccttcaacaagtttacattgacatgttcgatcagatcgatgaaaaaatgaaagatgctcttcaggccgattgcacacgatatgcgccaggtattgagattctcagtgtacgtattacaaaacctagcatcccagagagcataagacgaaattttgagaacatggaacaggagcgcaccaaggtcttgattgcagtagagagacaaagagttgctgagaaggaagcagagacacagaaaaagatagcaatcagtgaagctgaaagaaatgctcatgttagtaagatccagatggaacagaagttgatggaaaaagatagtgcaagggaaacaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="116755" stop="112874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116519" g_stop="116380" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="194" r_length="137" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.153" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114876" g_stop="114756" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="315" r_length="121" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100">
            <donor d_prob="0.618" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114655" g_stop="114588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="383" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114438" g_stop="114379" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="443" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79">
            <donor d_prob="0.752" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114299" g_stop="114141" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="602" r_length="159" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.913" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113818" g_stop="113672" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="749" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113326" g_stop="113174" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="903" r_length="154" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-M7154" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116519" e_stop="116380"/>
          <exon e_start="114876" e_stop="114756"/>
          <exon e_start="114655" e_stop="114588"/>
          <exon e_start="114438" e_stop="114379"/>
          <exon e_start="114299" e_stop="114141"/>
          <exon e_start="113818" e_stop="113672"/>
          <exon e_start="113326" e_stop="113174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTGGTGAATCAACTTTTATCCCTAAAAATATCAATATACTGCTTCTAAATTATCTATTGATTTCTCTATGTATGAATTTATTTTTGTTTTGATTATTGATTTGTGTTTAATATGTGGAGTGCATAGTGCTTGATAATTGTGTTTATTACATTAATTTGATTTGTGCACCTGGTGCTTGATCAATAGTGTTAATAGTGTTTGATAATGGCTTTGACTAATATAGAGTAGACTTTTCAGTTTAATCCATTCTATGATTCTCGAAATGCCTTTTTTTAAGCTTAAGTGGATTATCTGCTTAAGTTAAACCAATCTAAGGTCTGTAATAAGAGCATCCGTCGACAAAAGGATCACTTAAAGTGATCATCTCGTGGCTATTGAGAACGAATGAAATCAGATGATTCCATGAAAAATAGGAAAAATGATTTGTTCGCCTTTCTAAGAGGAGCAGGATGTTGGTGATGTAGTGGTTTTGATTGAATTGCTTTTTTAGGGTAAAAGAAAGACTAACTAGATTACAGTGTTTGATATATGAGCTATAGAAGTATTAGAACCTGTTTGGATTGGCTTATTTTAGGTGCTTTAAAGCATTTTTGTAGCATTGGGATGATATGAAAAAGTGGCTTCGCTCTTGTTTTTAAGCTAAAGTAACAAAAACAAGTCAAAAGACAGTTAGGATTCCTAACTTATGGATTATGTTTATAAGCCATGAGCTTATAAGTCCATCCAAACAGGCTCTTAGTAGTGTGGTGTCCAGGGGGTGATGGTGGTCATAAATTGTAACGAGGACCAGGTTTCGAATTCAGTTTTGGGGGGGGGGGGGAATTTGGTGATTTCTTTTGCTTAGCTTGGTGGGTAGAGTTATCCGATACATGATTTGGTGAGGAAAAAACAAGCCATTGCTTAAACTAATCCTTTTTATGTGGAAAGGAAAACTGAAACCAGACATTGTTAATCTTGTATTTGACAGTGTTAAGTTTTATGTGGAGACATTTCTCCACTAATCGCAACCAAACAATCACCTCAGAATAATTGTGATTGTGCTGGTTGTTTTAGACAACCTTTGCGAGCAGGATAATGTTTGCCGCATTAATGCTCAGAACCTAGCACACTTCTCAGTTTTGACGAAGTTCTATATTGTTTTAAATGTTCTAGGATTAGTCGTCGTACTTTTCTAGTGTTTGTCCCAATAACAAGAAAAAGTTTAAGTCGCCTTTCCTGTGGAACTGTTGTTTGATTAATTTTAGATATACTTGTCTTGGGTTTCTCAAAAAAAGATATACTTGTCTTGGGTTTTTACTTGCAATTGCTTGACACTGAAACTCGGCAATAGCCTAATGCTTTAGTATGCAATCTTCAATTTTTGTTGCATCTGTACTGTTGAGTAACTTGATAATAGGACTTGGGTAGAGTAACTGTGACTTACATGTTGGGGATGTGAGTTATTAGAAGTGAGACATCTTTCTTTTTATGGAAGGTATAACCAAGACATCTTAAAATCATTTTCAGATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAGGTGATATGGTGCTTTGTCTAGATGGTCATTTGCATTTTTGTGCGGTGTCTCCTTATTTTGAAGTCTATTGTTGACCAAACATGTATGTTTAAATGTGTAGGTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTGGTAACATTTCCTTTCTATTTTTATATTTGTAAGGTTTTTTATCTCAAAATTTCTGAGATCCTGAGTTTCTAGCAGCATGAGTTTTTAGTAATATAAACCCTGATTAAGAATAGGGTCAATGATGTCTCTGGATCATGTGGTAAATGCAGGTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAAGTAAACTATCTACCTTGTGGGTATTGCGTAATTATATGCAGGAACGCATTGTCATCTTATTTGTTTCATGTGCTTTCAGGTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAGGTAAGAGTCATCTTGGCCACTTATATACTGATGGTCTGCCAGTTTCTGTAGTCAATACTAATGAATCATCCTTTTCTGTTTCTTCTGGTGTTTGTGCTGTTCCATGTGTCTTTAACTGTTTCTGGTTTTACCTGCTCAGTATGTTTTCCGCACTTAGACATGCTCTACTTCCATGCTTAAAAATCCATGATATGCCTTCTAAGGCAAGGAATTATCTGATTATTTACATTCTCCGGGATTCTAAAACAAAAATACAGCAAAGTTAATTTAGACGACATTATTGTTAATAGTATTGACAAGGTGTCTGCCACAACATTTCCAGATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAGGTATTAAGTGGAGAACTCTGCTTCTTTTTGTCTGAACTGAATGATTTGTTTTCCACCATCTGAGAAGTGACGAACTTGTGCCTATCCCCCCCCCCCCCAACCACCACACACAACAGAAAAAAAAAAAAGGAAAAGAAAAAGAAAAAGAAAAACAATCCCCGAGAGCTTTCTGTGTTGTTGTTACTCTTACCCAATCATTATAATAACAGCTATTGAGTACTGACCATCAACGTGTTCTCCAATGTGCCATTATTGCATTGTTAGTTCCTTCTGATGCAGATATTTGGGCTATGATTAACAGTGACTTAATTAGTAATCCATCTGTGCATCAATGATGTGTTACAGGTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAAAAAGACAGTGCTA-GGAAACAAGAG</genome_strand>
        <mrna_strand>AAACCGCCATGGATGCACAGCAACAGCAGCGACAACAAGGTATTCCTAACCGTCCAAGGCACGGCGGC-G-ATGG-TGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTGGTTGCTTTCATCGCCATTTTCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCTCCTTCTGTGTCGACATTAAATAACAGTTTATCCATTTTACATCAAGTCCCCGAAGGTCATGTTGGTGTCTATTGGAGAGGAGGTGCCCTTTTAAGTACAATAACTGATCCAG....................................................................................................GTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAGCCCATTCAAGTTACTCTTCAAACAGATCTG.....................................................................................................................................................GTGAGGGATATTCCATGTGGAACCAAAGGAGGTGTGATGATCAACTTTGAGAAAATAGAA...............................................................................GTTGTTAACCGTCTTCGGAAGGACCATGTGTACGACACTCTGCTGAATTATGGGGTCAATTATGATAACACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGTAGTGCTCACAGCCTTCAACAAGTTTACATTGACATGTTCGATCAG..................................................................................................................................................................................................................................................................................................................................ATCGATGAAAAAATGAAAGATGCTCTTCAGGCCGATTGCACACGATATGCGCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCTAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACACAGAAAAAGATAGCAATCAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAGATGGAACAGAAGTTGATGGAAAAAGATAGTGCAAGGGAAACAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7154-2" ref_strand="+" ref_description="SGN-M7154-2 C2_At2g03510-2 [cosii_markers]">
      <seq>caaaaatataaattatattttggagtgctaagaaagcaaaaaaaataaaatccgccatggatgcacagcaacagcagagacaacaaggtgttccggctcgcccaaggtccggcggtggcggcggagacttcactccgattttcactgtgctcgttgctttcatcgccattttcgcattgattgtggctccattctatttcaacattaaataatagtgtatccattttacaccaagtgccggaaggtcatgttggagtctattggagaggaggtgcccttttaaatacaataactgatccaggttttcatatgaaactgccctttataactcagtttgaacccattcaagttactcttcaaacagatctggtaagggatattccttgcggaaccaaaggaggcgtgatgatcaactttgagaaagtagaagttgttaaccgccttcggaaggatcacgtgtatgataccctgctgaattatggggtcaattatgataatacatggatatacgacaagatccaccatgagatcaatcagttctgcagtgctcacagccttcaacaagtttatattgacatgtttgatcagatcgatgaaaaaatgaaagatgctcttcaggccgactgcacacgatatgctccaggtattgagattctcagtgtacgtattacaaaacctagcatcccggagagcataagacgaaattttgagaacatggaacaggagcgcaccaaggtcttgattgcagtagagagacaaagagttgctgagaaggaagcagagacgcagaaaaagatagcaataagtgaagctgaaagaaatgctcatgttagtaagatccaaatggaacagaagttgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="-" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="116873" stop="112898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116573" g_stop="116380" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.153" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114876" g_stop="114756" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="301" r_length="122" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100">
            <donor d_prob="0.618" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114655" g_stop="114588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="369" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114438" g_stop="114379" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79">
            <donor d_prob="0.752" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114299" g_stop="114141" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="588" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113818" g_stop="113672" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="735" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113326" g_stop="113198" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="864" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="-" ref_id="SGN-M7154-2" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7154-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116573" e_stop="116380"/>
          <exon e_start="114876" e_stop="114756"/>
          <exon e_start="114655" e_stop="114588"/>
          <exon e_start="114438" e_stop="114379"/>
          <exon e_start="114299" e_stop="114141"/>
          <exon e_start="113818" e_stop="113672"/>
          <exon e_start="113326" e_stop="113198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATATAAATTCTATTTTGGAGTGCTAAGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTGGTGAATCAACTTTTATCCCTAAAAATATCAATATACTGCTTCTAAATTATCTATTGATTTCTCTATGTATGAATTTATTTTTGTTTTGATTATTGATTTGTGTTTAATATGTGGAGTGCATAGTGCTTGATAATTGTGTTTATTACATTAATTTGATTTGTGCACCTGGTGCTTGATCAATAGTGTTAATAGTGTTTGATAATGGCTTTGACTAATATAGAGTAGACTTTTCAGTTTAATCCATTCTATGATTCTCGAAATGCCTTTTTTTAAGCTTAAGTGGATTATCTGCTTAAGTTAAACCAATCTAAGGTCTGTAATAAGAGCATCCGTCGACAAAAGGATCACTTAAAGTGATCATCTCGTGGCTATTGAGAACGAATGAAATCAGATGATTCCATGAAAAATAGGAAAAATGATTTGTTCGCCTTTCTAAGAGGAGCAGGATGTTGGTGATGTAGTGGTTTTGATTGAATTGCTTTTTTAGGGTAAAAGAAAGACTAACTAGATTACAGTGTTTGATATATGAGCTATAGAAGTATTAGAACCTGTTTGGATTGGCTTATTTTAGGTGCTTTAAAGCATTTTTGTAGCATTGGGATGATATGAAAAAGTGGCTTCGCTCTTGTTTTTAAGCTAAAGTAACAAAAACAAGTCAAAAGACAGTTAGGATTCCTAACTTATGGATTATGTTTATAAGCCATGAGCTTATAAGTCCATCCAAACAGGCTCTTAGTAGTGTGGTGTCCAGGGGGTGATGGTGGTCATAAATTGTAACGAGGACCAGGTTTCGAATTCAGTTTTGGGGGGGGGGGGGAATTTGGTGATTTCTTTTGCTTAGCTTGGTGGGTAGAGTTATCCGATACATGATTTGGTGAGGAAAAAACAAGCCATTGCTTAAACTAATCCTTTTTATGTGGAAAGGAAAACTGAAACCAGACATTGTTAATCTTGTATTTGACAGTGTTAAGTTTTATGTGGAGACATTTCTCCACTAATCGCAACCAAACAATCACCTCAGAATAATTGTGATTGTGCTGGTTGTTTTAGACAACCTTTGCGAGCAGGATAATGTTTGCCGCATTAATGCTCAGAACCTAGCACACTTCTCAGTTTTGACGAAGTTCTATATTGTTTTAAATGTTCTAGGATTAGTCGTCGTACTTTTCTAGTGTTTGTCCCAATAACAAGAAAAAGTTTAAGTCGCCTTTCCTGTGGAACTGTTGTTTGATTAATTTTAGATATACTTGTCTTGGGTTTCTCAAAAAAAGATATACTTGTCTTGGGTTTTTACTTGCAATTGCTTGACACTGAAACTCGGCAATAGCCTAATGCTTTAGTATGCAATCTTCAATTTTTGTTGCATCTGTACTGTTGAGTAACTTGATAATAGGACTTGGGTAGAGTAACTGTGACTTACATGTTGGGGATGTGAGTTATTAGAAGTGAGACATCTTTCTTTTTATGGAAGGTATAACCAAGACATCTTAAAATCATTTTCAGATTGTGGCTCC-TTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAGGTGATATGGTGCTTTGTCTAGATGGTCATTTGCATTTTTGTGCGGTGTCTCCTTATTTTGAAGTCTATTGTTGACCAAACATGTATGTTTAAATGTGTAGGTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTGGTAACATTTCCTTTCTATTTTTATATTTGTAAGGTTTTTTATCTCAAAATTTCTGAGATCCTGAGTTTCTAGCAGCATGAGTTTTTAGTAATATAAACCCTGATTAAGAATAGGGTCAATGATGTCTCTGGATCATGTGGTAAATGCAGGTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAAGTAAACTATCTACCTTGTGGGTATTGCGTAATTATATGCAGGAACGCATTGTCATCTTATTTGTTTCATGTGCTTTCAGGTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAGGTAAGAGTCATCTTGGCCACTTATATACTGATGGTCTGCCAGTTTCTGTAGTCAATACTAATGAATCATCCTTTTCTGTTTCTTCTGGTGTTTGTGCTGTTCCATGTGTCTTTAACTGTTTCTGGTTTTACCTGCTCAGTATGTTTTCCGCACTTAGACATGCTCTACTTCCATGCTTAAAAATCCATGATATGCCTTCTAAGGCAAGGAATTATCTGATTATTTACATTCTCCGGGATTCTAAAACAAAAATACAGCAAAGTTAATTTAGACGACATTATTGTTAATAGTATTGACAAGGTGTCTGCCACAACATTTCCAGATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAGGTATTAAGTGGAGAACTCTGCTTCTTTTTGTCTGAACTGAATGATTTGTTTTCCACCATCTGAGAAGTGACGAACTTGTGCCTATCCCCCCCCCCCCCAACCACCACACACAACAGAAAAAAAAAAAAGGAAAAGAAAAAGAAAAAGAAAAACAATCCCCGAGAGCTTTCTGTGTTGTTGTTACTCTTACCCAATCATTATAATAACAGCTATTGAGTACTGACCATCAACGTGTTCTCCAATGTGCCATTATTGCATTGTTAGTTCCTTCTGATGCAGATATTTGGGCTATGATTAACAGTGACTTAATTAGTAATCCATCTGTGCATCAATGATGTGTTACAGGTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAA</genome_strand>
        <mrna_strand>CAAAAATATAAATTATATTTTGGAGTGCTAAGAAAGC--AAAA-AAAAT--AA-AATCCGCCATGGATGCACAGCAACAGCAGAGACAACAAGGTGTTCCGGCTCGCCCAAGGT------CCGGC--GG-TGGCGGCGGAGACTTCACTCCGATTTTCACTGTGCTCGTTGCTTTCATCGCCATTTTCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGGCTCCATTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAG....................................................................................................GTTTTCATATGAAACTGCCCTTTATAACTCAGTTTGAACCCATTCAAGTTACTCTTCAAACAGATCTG.....................................................................................................................................................GTAAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAGTAGAA...............................................................................GTTGTTAACCGCCTTCGGAAGGATCACGTGTATGATACCCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATTGACATGTTTGATCAG..................................................................................................................................................................................................................................................................................................................................ATCGATGAAAAAATGAAAGATGCTCTTCAGGCCGACTGCACACGATATGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCTAGCATCCCGGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATAAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6600-2" ref_strand="+" ref_description="SGN-M6600-2 C2_At1g13820-2 [cosii_markers]">
      <seq>taaaaaaaatgctgaatatattatattcttggaaaagttgaattttagcagaaaaatccagtagtactctgcgtctgctatgttaacatctttctcagccggagctggtggagctacgccgccggcattaaccaatttgaaatggttgaattcgaggcgtttaaagatctgggctggctgtgattttccggattttcttcctaaacaagttgagaaaatcaaagacccttatgctagaaagttggcttcacgaattgagagaataccagtaaacttttcaaagggttgtgtcatgagtagttgtgtgaagccaaaagaactgaaagaggccaatccagtcgtacttctccatggttttgatagcacatgtttagagtggaggtacacgcttcctttgcttgaggaggctgggttggaaatctgggcagttgatatccttggatggggtttctctgatttaggaaggcttccatcgtgtgatgtagcttccaagcgtgatcatctttaccagctgtggtctacctacatcaagaggccaatggtacttgtcggaccgagtcttggatctgctgttgctattgacttctccgttcactatccagaagctgtggataggctggttttaatagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0115G01-uTgko/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05SLm0115G01.3" temp_strand="+" temp_description="C05SLm0115G01.3  AC212312.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0115G01 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132738" stop="135935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133064" g_stop="133296" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="268" r_length="233" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133297" i_stop="134290" i_length="994">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134291" g_stop="134385" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="363" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134386" i_stop="134463" i_length="78">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134464" g_stop="134561" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="461" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134562" i_stop="134677" i_length="116">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134678" g_stop="134727" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="511" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134728" i_stop="135396" i_length="669">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135397" g_stop="135492" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="607" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135493" i_stop="135607" i_length="115">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135608" g_stop="135635" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="635" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0115G01.3" gen_strand="+" ref_id="SGN-M6600-2" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0115G01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6600-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133064" e_stop="133296"/>
          <exon e_start="134291" e_stop="134385"/>
          <exon e_start="134464" e_stop="134561"/>
          <exon e_start="134678" e_stop="134727"/>
          <exon e_start="135397" e_stop="135492"/>
          <exon e_start="135608" e_stop="135635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAATTTAGCAGAAAAATCCAGTACTACTCTGCGTCTGCAATGCTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAACGATCTGGGCTGGCTGTGATTTTCCGGAATTTCTACCTAAACAAGTTGAAAATATCAAAGACCCGTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCAGTACGTTTTTTCCACTCTCTTTTTAAAATGTGTGTATTTTTTCTTTTAGTGGGTGTGAAGCTGATTTCCGTTGTTTTCGATGTGTTTGAAGTATTGGAATCAATGGGTGTGAAATCTGTACTTTTTGTTGAAATGGGTTTGTGCTGATTGGTTAAAAAATCGTTTCTTTTGATAAATTTAGGATCTAATATCAGTAGATTAAGACTTGCATCATGCATGCAAGATCTTATGGATGGGGTAAAGGTTGGGGTAATGTTTGTTTTCATCCTATACTGGCCGGACTTTATTTGCGGAATTACACTGAGTTTGTTGCTGTTGTTGGTGGTGGTGGTGGCAGCGGTGATCGTGGTCGTATCACCTTGTGTGCACGGGGTACTTACTACCTCTCGCGTGTGTATTGGATAATTTTGTGACTTTGGCAAATGGGATGTTATGATGTCTATGCCTGAGGATGTCAGACATGGATGGGGTGTGTGTTGGAGGACAAGGAGGAGTGGATAACCACTTATGGAACTCGTTTTTGTAGTGAAAATATTTTCCTAAAATTTTAACCAACCAAATATGGAAAATTGGAAAAGGGAAAACATGTGAAAGTTTTACAGATATGACAGGAAGAAGTGTTGGATGTTGGGAAGGAGAGAATACTTTCTATTTGGTCATGGTTGTTTAGGAATACGGCAGATGTGCATCCAAGATTTTGAGACTGGTATGTTTACTACTGCACCTACTTGTTTGACAATGCATGGGGAATTAATATGAAGATACATTGTTAGAATCTTTTCGGATATATCACACACAATAACTAGATGAATGCCGCGGGGGTGGATATTACCATTGCTGTGATGAAGGTGTTTGCCCACGATCCACAAGTTAATCAGTCTTCTTGTATGAAATATGTATTTTCTTTTTAATCGTAAACTCAGGGATCTAAATATTTTGCTTCCCCTGTTTTGTATTGATTTATCTAAATATCTGCTTCTCCTGGTTCATTTAGGTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACAGAAAGAGGCCAATCCAGTTGTACTTCTCCATGGTTTTGATAGGTATGCCTCGTGCTATCCTAATAGTATTGATCACTTTCTCTTGCTGTGTTCTGCTGTTCATTATACCTCATTGTTCAGCACATGTTTAGAGTGGAGGTACACGCTTCCATTGCTTGAGGAGGCTGGTTTGGAGACCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATCTAGGTATATTGTTTTGTTCAAGCACTTTCGCAATATTCATTTTTCAAAAAGATTTTGCGAACAAAGACTCAGGATTTGCTCATAGTTTCATCCCTTTATGTTTTCTTGTGATTTTTAAGGAAGGCTTCCTTCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAGGTACCTACTGATTTTGTCGAATATATGTTCTAATCTAGTGTTCAAAACAGCCTCTCTACCCCACTTAGGTAGGGGTGAGGTCTGTGGTGCCCCTTACCCTCACCCTCCCCAGACCCCAATTATAGGACCACATTGGGTATGTTGTTGTATTTGTTCTAATCCAGTGCATACAAACTTGAAAGGCTGGAATTAGTCTCTTTTATAGCAAATCCTAATAAATGTAAAAGTAGCTTATACACGAGTAAGCCACAAGTGGTGCTTGGGGAGGGTGGTGTGTACACAGCCTTACCTCTACGGTAGAGAAGAAGTAGCCTATATAAGTACAGAATTAAGTTAACAGTCACATTTAATTAGCTTGAGTAGTGAGGCTTAGTAAATTGGACTTAATATGCAGGGTTAGGTTCTACAATTACACTTTGTTCAGTAGTATAATATGATATCACAGTTATGTAGCATCATAGAGGAGCTCTCTTACTCGATAGAGACCCAACTTAGGAATGATGGTGTAATGTTTACTTCGATTAAGTTTATCTGGGAAATAAGACCCAACTTATGAATAATGGTGTTAACGGTTCTTCTTTTATCTTTTCTTTTTTTCAAAAAAAAAAAAAAAAGAAAAAAAGAACCGTTGACACGTTTTCTAACTTTTCACTCTCATTTTTCTTTCAGCTGTGGTCTACCTACATTAAGAGGCCAATGGTGCTTGTCGGTCCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCTGTCCACTATCCAGAAGCTGTAAGTATGTTCAATGACTGTGAATTCCTATCCAGATTTTATAGATTTGTTTCTACTTTCTACTATTAAGGAGGAATCATTTTATTGCTAACTCCGAAGTACTTATACTTCATAGGTGGATAGGCTGGTTTTAATAGATGCAA</genome_strand>
        <mrna_strand>AGTTGAATTTTAGCAGAAAAATCCAGTAGTACTCTGCGTCTGCTATGTTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAAAGATCTGGGCTGGCTGTGATTTTCCGGATTTTCTTCCTAAACAAGTTGAGAAAATCAAAGACCCTTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACTGAAAGAGGCCAATCCAGTCGTACTTCTCCATGGTTTTGATAG..............................................................................CACATGTTTAGAGTGGAGGTACACGCTTCCTTTGCTTGAGGAGGCTGGGTTGGAAATCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATTTAG....................................................................................................................GAAGGCTTCCATCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTCTACCTACATCAAGAGGCCAATGGTACTTGTCGGACCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCCGTTCACTATCCAGAAGCT...................................................................................................................GTGGATAGGCTGGTTTTAATAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="52919" PGL_stop="53537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52919" e_stop="53537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52919" e_stop="53537" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52919" stop="53537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M14-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAAAAGTAAAAGCTAGTCATTAATATATTGTCCATGAGAAGACTAATAGGCTTCAGAATGCCTAACCATGTCAAATCTAGGAAGTTCACTAAGGAAAAGGAGAAAAATGCTGAAAGTTGGGGAAATGAAGGAAAACAGTGTCAAACTTTCTTATTATTATGAGAGGAATTTAGTCAACAAAAAAGAAAAGAAACTATCTTCTCTAAATAGATGGCTAAACAGCTCCAGATTACACGGCCTAATTTTCAACTAAAACCCATAGCCATTAGATGTCCTTTTAGTACCCATCTTATGATACTAAACATGTTGACCAGCTGCCTTGCTGACTATGGTAAGGGTCAACTTGAAAGTTCAATCATATCAGCACACATGGTAATTTGGTGTAATTCTATGATATCACGGGATGTACTTTTAAGAATCCAAAGCAAGTAACCATACCTAGGGATTAACCATTTAACATTGTTGCATCAAGGCTCATGTATAGTTTAGGCAACAGCCGACTTGGTTTAGCTCTTGCTCTCCTTCTTTGGACCAGTGTTTTAGGCAGCGAAAGGCGACAAGGGCCTGCCTCGCCTTGCGGCGCTCGCCTTCTTGATTTGCCCCAAAATCTAGTTCA</gDNA_template>
            <first_frame> F  K  K  *  K  L  V  I  N  I  L  S  M  R  R  L  I  G  F  R  M  P  N  H  V  K  S  R  K  F  T  K  E  K  E  K  N  A  E  S  W  G  N  E  G  K  Q  C  Q  T  F  L  L  L  *  E  E  F  S  Q  Q  K  R  K  E  T  I  F  S  K  *  M  A  K  Q  L  Q  I  T  R  P  N  F  Q  L  K  P  I  A  I  R  C  P  F  S  T  H  L  M  I  L  N  M  L  T  S  C  L  A  D  Y  G  K  G  Q  L  E  S  S  I  I  S  A  H  M  V  I  W  C  N  S  M  I  S  R  D  V  L  L  R  I  Q  S  K  *  P  Y  L  G  I  N  H  L  T  L  L  H  Q  G  S  C  I  V  *  A  T  A  D  L  V  *  L  L  L  S  F  F  G  P  V  F  *  A  A  K  G  D  K  G  L  P  R  L  A  A  L  A  F  L  I  C  P  K  I  *  F  </first_frame>
            <second_frame>  S  K  S  K  S  *  S  L  I  Y  C  P  *  E  D  *  *  A  S  E  C  L  T  M  S  N  L  G  S  S  L  R  K  R  R  K  M  L  K  V  G  E  M  K  E  N  S  V  K  L  S  Y  Y  Y  E  R  N  L  V  N  K  K  E  K  K  L  S  S  L  N  R  W  L  N  S  S  R  L  H  G  L  I  F  N  *  N  P  *  P  L  D  V  L  L  V  P  I  L  *  Y  *  T  C  *  P  A  A  L  L  T  M  V  R  V  N  L  K  V  Q  S  Y  Q  H  T  W  *  F  G  V  I  L  *  Y  H  G  M  Y  F  *  E  S  K  A  S  N  H  T  *  G  L  T  I  *  H  C  C  I  K  A  H  V  *  F  R  Q  Q  P  T  W  F  S  S  C  S  P  S  L  D  Q  C  F  R  Q  R  K  A  T  R  A  C  L  A  L  R  R  S  P  S  *  F  A  P  K  S  S  S </second_frame>
            <third_frame>   Q  K  V  K  A  S  H  *  Y  I  V  H  E  K  T  N  R  L  Q  N  A  *  P  C  Q  I  *  E  V  H  *  G  K  G  E  K  C  *  K  L  G  K  *  R  K  T  V  S  N  F  L  I  I  M  R  G  I  *  S  T  K  K  K  R  N  Y  L  L  *  I  D  G  *  T  A  P  D  Y  T  A  *  F  S  T  K  T  H  S  H  *  M  S  F  *  Y  P  S  Y  D  T  K  H  V  D  Q  L  P  C  *  L  W  *  G  S  T  *  K  F  N  H  I  S  T  H  G  N  L  V  *  F  Y  D  I  T  G  C  T  F  K  N  P  K  Q  V  T  I  P  R  D  *  P  F  N  I  V  A  S  R  L  M  Y  S  L  G  N  S  R  L  G  L  A  L  A  L  L  L  W  T  S  V  L  G  S  E  R  R  Q  G  P  A  S  P  C  G  A  R  L  L  D  L  P  Q  N  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53132" stop="53353"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAKQLQITRPNFQLKPIAIRCPFSTHLMILNMLTSCLADYGKGQLESSIISAHMVIWCNSMISRDVLLRIQSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52971" stop="53174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASECLTMSNLGSSLRKRRKMLKVGEMKENSVKLSYYYERNLVNKKEKKLSSLNRWLNSSRLHGLIFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="54732" PGL_stop="54195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54732" e_stop="54195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="54732" e_stop="54195" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54732" stop="54195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M14-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCAGCTAGTAATATATAATATGCAGTAGGTTATATTTGATTAATTATTTGTCTTTCACTTGTCTCTACACTTGGTGCTGAGTAGATGTTTGAACTTCAAGTCAAAGCTATGCCATGAAGGCGATAATGGAACTAGTATGACTGAGTTAGTTGCTTAGCACCAGCTCAAAGTAGACCTCCAAACAATCAACTCTGATTTTTTGATGATGTAAGGTGTTGCATAACTCGCATCAAGAAGATGCGAAATAGTACAAAAGAGGTTAGCGAACTCCAGTTACAAACAAAATACATTTACAGTCAGGGAGTTAACCAATAGAACCAAAAAGCCTATAGGTTGCGCAATCATGCCAAAGTAGAGATCTAATAAAATCTAGAAATGGGATAATATTATTAAGGGGAAAGATTGCTCCAACTATAAAGATTCCTAAGACATTTGGCTTTCAGGGAACTATTGGGAGTTGAAATACCATCAAAGCATTTCCAACTCGTTTCTGTCCAAATACACCAAAATATACATACTAGGATCATCTGCCTG</gDNA_template>
            <first_frame> H  C  S  *  *  Y  I  I  C  S  R  L  Y  L  I  N  Y  L  S  F  T  C  L  Y  T  W  C  *  V  D  V  *  T  S  S  Q  S  Y  A  M  K  A  I  M  E  L  V  *  L  S  *  L  L  S  T  S  S  K  *  T  S  K  Q  S  T  L  I  F  *  *  C  K  V  L  H  N  S  H  Q  E  D  A  K  *  Y  K  R  G  *  R  T  P  V  T  N  K  I  H  L  Q  S  G  S  *  P  I  E  P  K  S  L  *  V  A  Q  S  C  Q  S  R  D  L  I  K  S  R  N  G  I  I  L  L  R  G  K  I  A  P  T  I  K  I  P  K  T  F  G  F  Q  G  T  I  G  S  *  N  T  I  K  A  F  P  T  R  F  C  P  N  T  P  K  Y  T  Y  *  D  H  L  P  </first_frame>
            <second_frame>  T  A  A  S  N  I  *  Y  A  V  G  Y  I  *  L  I  I  C  L  S  L  V  S  T  L  G  A  E  *  M  F  E  L  Q  V  K  A  M  P  *  R  R  *  W  N  *  Y  D  *  V  S  C  L  A  P  A  Q  S  R  P  P  N  N  Q  L  *  F  F  D  D  V  R  C  C  I  T  R  I  K  K  M  R  N  S  T  K  E  V  S  E  L  Q  L  Q  T  K  Y  I  Y  S  Q  G  V  N  Q  *  N  Q  K  A  Y  R  L  R  N  H  A  K  V  E  I  *  *  N  L  E  M  G  *  Y  Y  *  G  E  R  L  L  Q  L  *  R  F  L  R  H  L  A  F  R  E  L  L  G  V  E  I  P  S  K  H  F  Q  L  V  S  V  Q  I  H  Q  N  I  H  T  R  I  I  C  L </second_frame>
            <third_frame>   L  Q  L  V  I  Y  N  M  Q  *  V  I  F  D  *  L  F  V  F  H  L  S  L  H  L  V  L  S  R  C  L  N  F  K  S  K  L  C  H  E  G  D  N  G  T  S  M  T  E  L  V  A  *  H  Q  L  K  V  D  L  Q  T  I  N  S  D  F  L  M  M  *  G  V  A  *  L  A  S  R  R  C  E  I  V  Q  K  R  L  A  N  S  S  Y  K  Q  N  T  F  T  V  R  E  L  T  N  R  T  K  K  P  I  G  C  A  I  M  P  K  *  R  S  N  K  I  *  K  W  D  N  I  I  K  G  K  D  C  S  N  Y  K  D  S  *  D  I  W  L  S  G  N  Y  W  E  L  K  Y  H  Q  S  I  S  N  S  F  L  S  K  Y  T  K  I  Y  I  L  G  S  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0115G01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="73119" PGL_stop="74268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73119" e_stop="73433"/>
            <exon e_start="73527" e_stop="74268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="73119" e_stop="73433" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73434" i_stop="73526" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="73527" e_stop="74268" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73119" stop="73433"/>
              <exon start="73527" stop="74268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTAAAACATCAAAAATTAAGAAAATGTTATGACGTAGGCTCTGCCACTGGGCCAAAATTTAGACGGGCACTTCCAAAGTGCAATGGAGCCCACCAACCTAGGTCATGGGCCTTCCTGATCGCCCATCGACCCTATTCAGGTAAATTTGAAGAAAATATTGAAGTATGGCCATGTGAATAACTGATTATACCTGTAAAACTCATTTGAAAATGGTATTTGAAGGGAGATATTCTTGAGGACCCTGCAAATGAGCCAATGAAGGATATGTATATGATGTCAGTTGATCCCCAAGATGCACCTGATCAACCTGA : GTATGTGAACATTGGGATAGTTGCTGGTATTCCTGTTTCAGTAAATGGAAAGGAGCTCTCTCCTGCAACTCTTCTTTCTGAGCTAAATGAAATTGGCGGAAGACATGGAATTGGACGAATAGACATGGTTGAAAATAGGCTTGTTGGAATGAAGAGCCGTGGAGTATATGAAACCCCTGGGGGAACTATCCTTTTCTCAGCTGTGCAAGAACTTGAGTCTCTTACACTTGATCGTGAAACAATCCAAGTCAAGGATTCTCTCGCCCTCAAATATGCAGAATTAGTTTATGCTGGCAGGTGGTTTGATCCACTTCGCGAGTCAATGGATGCTTTCATGGAGAATATTACCAAAACTACAACAGGTTCAGTTACTCTCAAACTATACAAAGGATCAGTTTCAGTGACAGGTCGTCAAAGTCCTCACAGTTTGTACAGACAAGATATCTCATCATTCGAGAGTGGGGATATCTACAATCAAGCCGATGCTGCAGGATTCATTCGTCTGTATGGGCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGTCTTTAAATTTGTTTTCGCGTCGTGAATTGATGGTTTAGTGTTGACAGTTCCATCAAAGGGTCAAGTAGAATCTTGTTTTTTTCCATTTCATAGCACTGTAGTTTTTTTGTACGGCTTTGGAGGCTAGTTTATCGTTCAAATTGTCTTGCAGAAATTTCCTCTGGTTCAATATATTTGAAAGTCCATTAAGAAAAA</gDNA_template>
            <first_frame> E  T  K  T  S  K  I  K  K  M  L  *  R  R  L  C  H  W  A  K  I  *  T  G  T  S  K  V  Q  W  S  P  P  T  *  V  M  G  L  P  D  R  P  S  T  L  F  R  *  I  *  R  K  Y  *  S  M  A  M  *  I  T  D  Y  T  C  K  T  H  L  K  M  V  F  E  G  R  Y  S  *  G  P  C  K  *  A  N  E  G  Y  V  Y  D  V  S  *  S  P  R  C  T  *  S  T  *  :  V  C  E  H  W  D  S  C  W  Y  S  C  F  S  K  W  K  G  A  L  S  C  N  S  S  F  *  A  K  *  N  W  R  K  T  W  N  W  T  N  R  H  G  *  K  *  A  C  W  N  E  E  P  W  S  I  *  N  P  W  G  N  Y  P  F  L  S  C  A  R  T  *  V  S  Y  T  *  S  *  N  N  P  S  Q  G  F  S  R  P  Q  I  C  R  I  S  L  C  W  Q  V  V  *  S  T  S  R  V  N  G  C  F  H  G  E  Y  Y  Q  N  Y  N  R  F  S  Y  S  Q  T  I  Q  R  I  S  F  S  D  R  S  S  K  S  S  Q  F  V  Q  T  R  Y  L  I  I  R  E  W  G  Y  L  Q  S  S  R  C  C  R  I  H  S  S  V  W  A  S  N  E  G  *  G  N  A  *  E  G  S  L  N  L  F  S  R  R  E  L  M  V  *  C  *  Q  F  H  Q  R  V  K  *  N  L  V  F  F  H  F  I  A  L  *  F  F  C  T  A  L  E  A  S  L  S  F  K  L  S  C  R  N  F  L  W  F  N  I  F  E  S  P  L  R  K  </first_frame>
            <second_frame>  K  L  K  H  Q  K  L  R  K  C  Y  D  V  G  S  A  T  G  P  K  F  R  R  A  L  P  K  C  N  G  A  H  Q  P  R  S  W  A  F  L  I  A  H  R  P  Y  S  G  K  F  E  E  N  I  E  V  W  P  C  E  *  L  I  I  P  V  K  L  I  *  K  W  Y  L  K  G  D  I  L  E  D  P  A  N  E  P  M  K  D  M  Y  M  M  S  V  D  P  Q  D  A  P  D  Q  P  E :   Y  V  N  I  G  I  V  A  G  I  P  V  S  V  N  G  K  E  L  S  P  A  T  L  L  S  E  L  N  E  I  G  G  R  H  G  I  G  R  I  D  M  V  E  N  R  L  V  G  M  K  S  R  G  V  Y  E  T  P  G  G  T  I  L  F  S  A  V  Q  E  L  E  S  L  T  L  D  R  E  T  I  Q  V  K  D  S  L  A  L  K  Y  A  E  L  V  Y  A  G  R  W  F  D  P  L  R  E  S  M  D  A  F  M  E  N  I  T  K  T  T  T  G  S  V  T  L  K  L  Y  K  G  S  V  S  V  T  G  R  Q  S  P  H  S  L  Y  R  Q  D  I  S  S  F  E  S  G  D  I  Y  N  Q  A  D  A  A  G  F  I  R  L  Y  G  L  P  M  R  V  R  A  M  L  E  K  G  L  *  I  C  F  R  V  V  N  *  W  F  S  V  D  S  S  I  K  G  S  S  R  I  L  F  F  S  I  S  *  H  C  S  F  F  V  R  L  W  R  L  V  Y  R  S  N  C  L  A  E  I  S  S  G  S  I  Y  L  K  V  H  *  E  K </second_frame>
            <third_frame>   N  *  N  I  K  N  *  E  N  V  M  T  *  A  L  P  L  G  Q  N  L  D  G  H  F  Q  S  A  M  E  P  T  N  L  G  H  G  P  S  *  S  P  I  D  P  I  Q  V  N  L  K  K  I  L  K  Y  G  H  V  N  N  *  L  Y  L  *  N  S  F  E  N  G  I  *  R  E  I  F  L  R  T  L  Q  M  S  Q  *  R  I  C  I  *  C  Q  L  I  P  K  M  H  L  I  N  L   : S  M  *  T  L  G  *  L  L  V  F  L  F  Q  *  M  E  R  S  S  L  L  Q  L  F  F  L  S  *  M  K  L  A  E  D  M  E  L  D  E  *  T  W  L  K  I  G  L  L  E  *  R  A  V  E  Y  M  K  P  L  G  E  L  S  F  S  Q  L  C  K  N  L  S  L  L  H  L  I  V  K  Q  S  K  S  R  I  L  S  P  S  N  M  Q  N  *  F  M  L  A  G  G  L  I  H  F  A  S  Q  W  M  L  S  W  R  I  L  P  K  L  Q  Q  V  Q  L  L  S  N  Y  T  K  D  Q  F  Q  *  Q  V  V  K  V  L  T  V  C  T  D  K  I  S  H  H  S  R  V  G  I  S  T  I  K  P  M  L  Q  D  S  F  V  C  M  G  F  Q  *  G  L  G  Q  C  L  R  R  V  F  K  F  V  F  A  S  *  I  D  G  L  V  L  T  V  P  S  K  G  Q  V  E  S  C  F  F  P  F  H  S  T  V  V  F  L  Y  G  F  G  G  *  F  I  V  Q  I  V  L  Q  K  F  P  L  V  Q  Y  I  *  K  S  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73330" stop="73433"/>
                    <exon start="73527" stop="74079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWYLKGDILEDPANEPMKDMYMMSVDPQDAPDQPEYVNIGIVAGIPVSVNGKELSPATLLSELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMENITKTTTGSVTLKLYKGSVSVTGRQSPHSLYRQDISSFESGDIYNQADAAGFIRLYGLPMRVRAMLEKGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="116573" PGL_stop="113174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116573" e_stop="116380"/>
            <exon e_start="114876" e_stop="114756"/>
            <exon e_start="114655" e_stop="114588"/>
            <exon e_start="114438" e_stop="114379"/>
            <exon e_start="114299" e_stop="114141"/>
            <exon e_start="113818" e_stop="113672"/>
            <exon e_start="113326" e_stop="113174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.153" e_score="0.892"/>
          <exon-intron don_prob="0.618" acc_prob="0.975" e_score="0.983"/>
          <exon-intron don_prob="0.978" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="0.967"/>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="0.975"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="116573" e_stop="116380" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.153">
            <gDNA_intron_boundary i_start="116379" i_stop="114877" i_length="1503"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="114876" e_stop="114756" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.618" acc_prob="0.975">
            <gDNA_intron_boundary i_start="114755" i_stop="114656" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="114655" e_stop="114588" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114587" i_stop="114439" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="114438" e_stop="114379" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114378" i_stop="114300" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="114299" e_stop="114141" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="114140" i_stop="113819" i_length="322"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="113818" e_stop="113672" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113671" i_stop="113327" i_length="345"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="113326" e_stop="113174" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116573" stop="116380"/>
              <exon start="114876" stop="114756"/>
              <exon start="114655" stop="114588"/>
              <exon start="114438" stop="114379"/>
              <exon start="114299" stop="114141"/>
              <exon start="113818" stop="113672"/>
              <exon start="113326" stop="113198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7154-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116519" stop="116380"/>
              <exon start="114876" stop="114756"/>
              <exon start="114655" stop="114588"/>
              <exon start="114438" stop="114379"/>
              <exon start="114299" stop="114141"/>
              <exon start="113818" stop="113672"/>
              <exon start="113326" stop="113174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATATAAATTCTATTTTGGAGTGCTAAGAAAGCAAAAAATAAAATAAAATAATCCGCCATGGATGCGCAGCAACAGCAGAGACAACAAGGTGTTCCAGCTCGCCCAAGGTCCGGCGCCGGCAGGGATGGCGGCGGAGACTTCACTCCTATTCTCACTGTGCTCGTTGCTTTCATCTCCATTTTCGCATTG : ATTGTGGCTCCTTCTATTTCAACATTAAATAATAGTGTATCCATTTTACACCAAGTGCCGGAAGGTCATGTTGGAGTCTATTGGAGAGGAGGTGCCCTTTTAAATACAATAACTGATCCAG : GTTTTCATTTGAAACTGCCCTTTATAACTCAGTTTGAACCCATACAAGTTACTCTTCAAACAGATCTG : GTGAGGGATATTCCTTGCGGAACCAAAGGAGGCGTGATGATCAACTTTGAGAAAATAGAA : GTTGTTAACCGCCTTCGGAAGGACCACGTGTACGATACTCTGCTGAATTATGGGGTCAATTATGATAATACATGGATATACGACAAGATCCACCATGAGATCAATCAGTTCTGCAGTGCTCACAGCCTTCAACAAGTTTATATCGACATGTTTGATCAG : ATCGATGAAAAAATGAAAGATGCACTTCAGGCTGACTGCACACGATACGCTCCAGGTATTGAGATTCTCAGTGTACGTATTACAAAACCCAGCATCCCAGAGAGCATAAGACGAAATTTTGAGAACATGGAACAGGAGCGCACCAAG : GTCTTGATTGCAGTAGAGAGACAAAGAGTTGCTGAGAAGGAAGCAGAGACGCAGAAAAAGATAGCAATTAGTGAAGCTGAAAGAAATGCTCATGTTAGTAAGATCCAAATGGAACAGAAGTTGATGGAAAAAGACAGTGCTAGGAAACAAGAG</gDNA_template>
            <first_frame> Q  K  Y  K  F  Y  F  G  V  L  R  K  Q  K  I  K  *  N  N  P  P  W  M  R  S  N  S  R  D  N  K  V  F  Q  L  A  Q  G  P  A  P  A  G  M  A  A  E  T  S  L  L  F  S  L  C  S  L  L  S  S  P  F  S  H  * :   L  W  L  L  L  F  Q  H  *  I  I  V  Y  P  F  Y  T  K  C  R  K  V  M  L  E  S  I  G  E  E  V  P  F  *  I  Q  *  L  I  Q  :  V  F  I  *  N  C  P  L  *  L  S  L  N  P  Y  K  L  L  F  K  Q  I  W :   *  G  I  F  L  A  E  P  K  E  A  *  *  S  T  L  R  K  *  K :   L  L  T  A  F  G  R  T  T  C  T  I  L  C  *  I  M  G  S  I  M  I  I  H  G  Y  T  T  R  S  T  M  R  S  I  S  S  A  V  L  T  A  F  N  K  F  I  S  T  C  L  I  R :   S  M  K  K  *  K  M  H  F  R  L  T  A  H  D  T  L  Q  V  L  R  F  S  V  Y  V  L  Q  N  P  A  S  Q  R  A  *  D  E  I  L  R  T  W  N  R  S  A  P  R :   S  *  L  Q  *  R  D  K  E  L  L  R  R  K  Q  R  R  R  K  R  *  Q  L  V  K  L  K  E  M  L  M  L  V  R  S  K  W  N  R  S  *  W  K  K  T  V  L  G  N  K   </first_frame>
            <second_frame>  K  N  I  N  S  I  L  E  C  *  E  S  K  K  *  N  K  I  I  R  H  G  C  A  A  T  A  E  T  T  R  C  S  S  S  P  K  V  R  R  R  Q  G  W  R  R  R  L  H  S  Y  S  H  C  A  R  C  F  H  L  H  F  R  I   : D  C  G  S  F  Y  F  N  I  K  *  *  C  I  H  F  T  P  S  A  G  R  S  C  W  S  L  L  E  R  R  C  P  F  K  Y  N  N  *  S  R :   F  S  F  E  T  A  L  Y  N  S  V  *  T  H  T  S  Y  S  S  N  R  S   : G  E  G  Y  S  L  R  N  Q  R  R  R  D  D  Q  L  *  E  N  R   : S  C  *  P  P  S  E  G  P  R  V  R  Y  S  A  E  L  W  G  Q  L  *  *  Y  M  D  I  R  Q  D  P  P  *  D  Q  S  V  L  Q  C  S  Q  P  S  T  S  L  Y  R  H  V  *  S   : D  R  *  K  N  E  R  C  T  S  G  *  L  H  T  I  R  S  R  Y  *  D  S  Q  C  T  Y  Y  K  T  Q  H  P  R  E  H  K  T  K  F  *  E  H  G  T  G  A  H  Q   : G  L  D  C  S  R  E  T  K  S  C  *  E  G  S  R  D  A  E  K  D  S  N  *  *  S  *  K  K  C  S  C  *  *  D  P  N  G  T  E  V  D  G  K  R  Q  C  *  E  T  R  </second_frame>
            <third_frame>   K  I  *  I  L  F  W  S  A  K  K  A  K  N  K  I  K  *  S  A  M  D  A  Q  Q  Q  Q  R  Q  Q  G  V  P  A  R  P  R  S  G  A  G  R  D  G  G  G  D  F  T  P  I  L  T  V  L  V  A  F  I  S  I  F  A  L  :  I  V  A  P  S  I  S  T  L  N  N  S  V  S  I  L  H  Q  V  P  E  G  H  V  G  V  Y  W  R  G  G  A  L  L  N  T  I  T  D  P   : G  F  H  L  K  L  P  F  I  T  Q  F  E  P  I  Q  V  T  L  Q  T  D  L  :  V  R  D  I  P  C  G  T  K  G  G  V  M  I  N  F  E  K  I  E  :  V  V  N  R  L  R  K  D  H  V  Y  D  T  L  L  N  Y  G  V  N  Y  D  N  T  W  I  Y  D  K  I  H  H  E  I  N  Q  F  C  S  A  H  S  L  Q  Q  V  Y  I  D  M  F  D  Q  :  I  D  E  K  M  K  D  A  L  Q  A  D  C  T  R  Y  A  P  G  I  E  I  L  S  V  R  I  T  K  P  S  I  P  E  S  I  R  R  N  F  E  N  M  E  Q  E  R  T  K  :  V  L  I  A  V  E  R  Q  R  V  A  E  K  E  A  E  T  Q  K  K  I  A  I  S  E  A  E  R  N  A  H  V  S  K  I  Q  M  E  Q  K  L  M  E  K  D  S  A  R  K  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116517" stop="116380"/>
                    <exon start="114876" stop="114756"/>
                    <exon start="114655" stop="114588"/>
                    <exon start="114438" stop="114379"/>
                    <exon start="114299" stop="114141"/>
                    <exon start="113818" stop="113672"/>
                    <exon start="113326" stop="113174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAMDAQQQQRQQGVPARPRSGAGRDGGGDFTPILTVLVAFISIFALIVAPSISTLNNSVSILHQVPEGHVGVYWRGGALLNTITDPGFHLKLPFITQFEPIQVTLQTDLVRDIPCGTKGGVMINFEKIEVVNRLRKDHVYDTLLNYGVNYDNTWIYDKIHHEINQFCSAHSLQQVYIDMFDQIDEKMKDALQADCTRYAPGIEILSVRITKPSIPESIRRNFENMEQERTKVLIAVERQRVAEKEAETQKKIAISEAERNAHVSKIQMEQKLMEKDSARKQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="133064" PGL_stop="135635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133064" e_stop="133296"/>
            <exon e_start="134291" e_stop="134385"/>
            <exon e_start="134464" e_stop="134561"/>
            <exon e_start="134678" e_stop="134727"/>
            <exon e_start="135397" e_stop="135492"/>
            <exon e_start="135608" e_stop="135635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="0.979"/>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="0.949"/>
          <exon-intron don_prob="0.983" acc_prob="0.921" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.948"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="133064" e_stop="133296" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="133297" i_stop="134290" i_length="994"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="134291" e_stop="134385" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="134386" i_stop="134463" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="134464" e_stop="134561" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="134562" i_stop="134677" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="134678" e_stop="134727" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.921">
            <gDNA_intron_boundary i_start="134728" i_stop="135396" i_length="669"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="135397" e_stop="135492" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="135493" i_stop="135607" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135608" e_stop="135635" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133064" stop="133296"/>
              <exon start="134291" stop="134385"/>
              <exon start="134464" stop="134561"/>
              <exon start="134678" stop="134727"/>
              <exon start="135397" stop="135492"/>
              <exon start="135608" stop="135635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6600-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTGAAATTTAGCAGAAAAATCCAGTACTACTCTGCGTCTGCAATGCTAACATCTTTCTCAGCCGGAGCTGGTGGAGCTACGCCGCCGGCATTAACCAATTTGAAATGGTTGAATTCGAGGCGTTTAACGATCTGGGCTGGCTGTGATTTTCCGGAATTTCTACCTAAACAAGTTGAAAATATCAAAGACCCGTATGCTAGAAAGTTGGCTTCACGAATTGAGAGAATACCA : GTAAACTTTTCAAAGGGTTGTGTCATGAGTAGTTGTGTGAAGCCAAAAGAACAGAAAGAGGCCAATCCAGTTGTACTTCTCCATGGTTTTGATAG : CACATGTTTAGAGTGGAGGTACACGCTTCCATTGCTTGAGGAGGCTGGTTTGGAGACCTGGGCAGTTGATATCCTTGGATGGGGTTTCTCTGATCTAG : GAAGGCTTCCTTCGTGTGATGTAGCTTCCAAGCGTGATCATCTTTACCAG : CTGTGGTCTACCTACATTAAGAGGCCAATGGTGCTTGTCGGTCCGAGTCTTGGATCTGCTGTTGCTATTGACTTCTCTGTCCACTATCCAGAAGCT : GTGGATAGGCTGGTTTTAATAGATGCAA</gDNA_template>
            <first_frame> S  *  N  L  A  E  K  S  S  T  T  L  R  L  Q  C  *  H  L  S  Q  P  E  L  V  E  L  R  R  R  H  *  P  I  *  N  G  *  I  R  G  V  *  R  S  G  L  A  V  I  F  R  N  F  Y  L  N  K  L  K  I  S  K  T  R  M  L  E  S  W  L  H  E  L  R  E  Y  Q :   *  T  F  Q  R  V  V  S  *  V  V  V  *  S  Q  K  N  R  K  R  P  I  Q  L  Y  F  S  M  V  L  I   : A  H  V  *  S  G  G  T  R  F  H  C  L  R  R  L  V  W  R  P  G  Q  L  I  S  L  D  G  V  S  L  I  *  :  E  G  F  L  R  V  M  *  L  P  S  V  I  I  F  T  S :   C  G  L  P  T  L  R  G  Q  W  C  L  S  V  R  V  L  D  L  L  L  L  L  T  S  L  S  T  I  Q  K  L :   W  I  G  W  F  *  *  M  Q </first_frame>
            <second_frame>  V  E  I  *  Q  K  N  P  V  L  L  C  V  C  N  A  N  I  F  L  S  R  S  W  W  S  Y  A  A  G  I  N  Q  F  E  M  V  E  F  E  A  F  N  D  L  G  W  L  *  F  S  G  I  S  T  *  T  S  *  K  Y  Q  R  P  V  C  *  K  V  G  F  T  N  *  E  N  T   : S  K  L  F  K  G  L  C  H  E  *  L  C  E  A  K  R  T  E  R  G  Q  S  S  C  T  S  P  W  F  *  *  :  H  M  F  R  V  E  V  H  A  S  I  A  *  G  G  W  F  G  D  L  G  S  *  Y  P  W  M  G  F  L  *  S  R :   K  A  S  F  V  *  C  S  F  Q  A  *  S  S  L  P   : A  V  V  Y  L  H  *  E  A  N  G  A  C  R  S  E  S  W  I  C  C  C  Y  *  L  L  C  P  L  S  R  S   : C  G  *  A  G  F  N  R  C   </second_frame>
            <third_frame>   L  K  F  S  R  K  I  Q  Y  Y  S  A  S  A  M  L  T  S  F  S  A  G  A  G  G  A  T  P  P  A  L  T  N  L  K  W  L  N  S  R  R  L  T  I  W  A  G  C  D  F  P  E  F  L  P  K  Q  V  E  N  I  K  D  P  Y  A  R  K  L  A  S  R  I  E  R  I  P  :  V  N  F  S  K  G  C  V  M  S  S  C  V  K  P  K  E  Q  K  E  A  N  P  V  V  L  L  H  G  F  D  S :   T  C  L  E  W  R  Y  T  L  P  L  L  E  E  A  G  L  E  T  W  A  V  D  I  L  G  W  G  F  S  D  L   : G  R  L  P  S  C  D  V  A  S  K  R  D  H  L  Y  Q  :  L  W  S  T  Y  I  K  R  P  M  V  L  V  G  P  S  L  G  S  A  V  A  I  D  F  S  V  H  Y  P  E  A  :  V  D  R  L  V  L  I  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0115G01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133066" stop="133296"/>
                    <exon start="134291" stop="134385"/>
                    <exon start="134464" stop="134561"/>
                    <exon start="134678" stop="134727"/>
                    <exon start="135397" stop="135492"/>
                    <exon start="135608" stop="135634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFSRKIQYYSASAMLTSFSAGAGGATPPALTNLKWLNSRRLTIWAGCDFPEFLPKQVENIKDPYARKLASRIERIPVNFSKGCVMSSCVKPKEQKEANPVVLLHGFDSTCLEWRYTLPLLEEAGLETWAVDILGWGFSDLGRLPSCDVASKRDHLYQLWSTYIKRPMVLVGPSLGSAVAIDFSVHYPEAVDRLVLIDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 66 chains have been computed
$ 
$ memory statistics:
$ 12688 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2114 bytes was the average size of a spliced alignment
$ 10616 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2123 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:36:31
-->
