<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-13 01:15:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207052" ref_strand="+" ref_description="SGN-E207052 [cLEC-30-E20]">
      <seq>ctatggtaatttcacgagaggaagaaactcaagacatagacgtagtttgtttggttcgatatgagttagaccagggatcgcacctttgaataagaaatcggaagttagggtttgtagaatgtcgagtggagtgatcccatccatcgttctgacatttggatctgcgtggtggtctagtaggactgccaccatgtcgggtgacaccatttccgatgcaatgtggaggggggttttgccagctggaccggccgggtggttcacgttggctgcaccgagctcgagtaacgctttcacaacctcccggctacaattctcgaccgcgtagtgtaacgcgatcgattcatcgagatttagtccttctcccatgaccataagtttgaccaattccacgtcggatgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="3386" stop="4365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3690" g_stop="4065" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="404" r_length="380" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E207052" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3690" e_stop="4065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCAAGACATAGACGTAGTTTATTTGGTTCGATATGAGTTAGACAAGGGATCACTCCTTTGAATAAAAGATCGGAATTTAGGGCTCTTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTTTGTCATTTGGATCCGCATGGTGGTCTAGTAGGACTACCACCATGTCGGGGAACAGCATTTCGGATGCAATGTGGAGGGGGG-TTTGCCAGCTGGACCAACCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCAGCTACAATTTTCAACCGCGTAGTGTAACGTGATCGATTCATCGAGA--TAGTCCTTCTCCC-TGACCATAAGTTTGACTAATTCCACGTCGGATGAGTCTA</genome_strand>
        <mrna_strand>AAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19913" stop="19013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19613" g_stop="19313" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19613" e_stop="19313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGACTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTTCAATTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGCCTATGTTAATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGTCTCAAGCAAGCCCCCCGTGCTTGGTACACATGTCTGAAAACATT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="20339" stop="19255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20039" g_stop="19554" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20039" e_stop="19554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACTACCCCATACCTACAACATCTCCAGCCCGATCCGTTTGGGGTCCTTCCCGGCCACCCTCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGTCGGTATCTTTAAACTCAAAACTTTTCAGGCTACCATACTACAAAATATACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGAGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAGACTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTT</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354794" ref_strand="+" ref_description="SGN-E354794 [cTOS-19-C12]">
      <seq>tttgagacaaatattcccaaatattgagcagattgattctgaagtgtacgcgtaagtgcttggatgtggatcttatgcatggttgatgctgatccccaagaataatgcgcttttgttagttaaatattgtttacggtgaggtccagctgatgagatgctgtgaaacctcccatcattttaggatgccgaagtcctgaaaagatgaaattacaggtaaattatagagcatgcaatgacatttgctgggtttttttttttgccgtctctgaagacatttattttgttcgtcctcggactacaaaggagtaacaatattgtacttatatatgtcctcccaattataaatgtcgccttttggtgttgtgttgtgaactgaagggaaaatgtaaggggaaaaatgtgtaattgggattttattgtcaattcacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25278" stop="24251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24978" g_stop="24551" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E354794" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24978" e_stop="24551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGACAAATATTCCCAAATATTGAGCAGATTGATTCTGAAGTGTACGCGTAAGTGCTTGGATGTGGATCTTATGCATGGTTGATGCTGATCCCCAAGAATAATGCGCTTTTGTTAGTTAAATATTGTTTACGGTGAGGTCCAGCTGATGAGATGCTGTGAAACCTCCCATCATTTTAGGATGCCGAAGTCCTGAAAAGATGAAATTACAGGTAAATTATAGAGCATGCAATGACATTTGCTGGGTTTTTTTTTTTTGCCGTCTCTGAAGACGTTTATTTTGTTCGTCCTCGGACTACAAAGGAGTAACAATATTGTACTTATATATGTCCTCCAAATTAGAAATGTCGCCTTTTGGTGTTGTGTTGTGAACTGAAGGGAAAATGTAAGGGGAAAAATGTTTAATTGGTATTTTATTGTCAATTCA</genome_strand>
        <mrna_strand>TTTGAGACAAATATTCCCAAATATTGAGCAGATTGATTCTGAAGTGTACGCGTAAGTGCTTGGATGTGGATCTTATGCATGGTTGATGCTGATCCCCAAGAATAATGCGCTTTTGTTAGTTAAATATTGTTTACGGTGAGGTCCAGCTGATGAGATGCTGTGAAACCTCCCATCATTTTAGGATGCCGAAGTCCTGAAAAGATGAAATTACAGGTAAATTATAGAGCATGCAATGACATTTGCTGGG-TTTTTTTTTTTGCCGTCTCTGAAGACATTTATTTTGTTCGTCCTCGGACTACAAAGGAGTAACAATATTGTACTTATATATGTCCTCCCAATTATAAATGTCGCCTTTTGGTGTTGTGTTGTGAACTGAAGGGAAAATGTAAGGGGAAAAATGTGTAATTGGGATTTTATTGTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701904" ref_strand="+" ref_description="SGN-E701904 [FA17BB01]">
      <seq>gctcattccattcatggaaaatcaaagtgaaaactccgatggaaaacctagttccgatccaacgtcggaatcagcaacactccttgatcttacgagttaccagcttcgcgatctggagtcagtggagcttcctccgagtcttacagagttagacttgacaaccaatcgtttgtccgctttagacccccgtatcggccaacttcctaacctcaaaaagctctctcttcgtcagaacctcataactgatgcctctgttgtgcctctttcctcttggcaactcatttctgacctcgaggagctagtgcttagggacaatcagctgaagaaaattcccaatgttgtgatattcaagaagcttctggtatttgatgtctctttcaatgagatatcatcactaagtggattgtccaaggtctccagtacactcagagaactatatgtgtctaaaaatgaagtcaccaagatggaggagattgagcacttccacgagctgcaaatactcgaacttgggtccaatagattacgggttatggagcttctggagaacttgaaaaatctacaagagctttggcttggacgcaatcgtattcggacagttaatttgtgcggtctgaaatgcattaaaaagattagcctgcagagcaaccgtctaacttccatgatggggtttcaggaatgtgttgcccttgaagaattatacttgagccataatggtattgtgaaaatggaaggtttgtctaccttggtaaacctgcgggtcttggatgtttcagcaaataagcttacagaaattaatgacattgagaacttgactaaactagaagatttgtggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="38651" stop="30431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38351" g_stop="38057" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38056" i_stop="31611" i_length="6446">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31610" g_stop="31380" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="526" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31379" i_stop="31221" i_length="159">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31220" g_stop="31074" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="673" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31073" i_stop="30990" i_length="84">
            <donor d_prob="0.492" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30989" g_stop="30847" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="816" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30846" i_stop="30751" i_length="96">
            <donor d_prob="0.155" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30750" g_stop="30731" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="836" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E701904" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38351" e_stop="38057"/>
          <exon e_start="31610" e_stop="31380"/>
          <exon e_start="31220" e_stop="31074"/>
          <exon e_start="30989" e_stop="30847"/>
          <exon e_start="30750" e_stop="30731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACTCCATTCATGGAAAATCAAAGTGAAAACTCCGATGGAAAACCTAGTTCCGATCCAACGTCGGAATCAGCAACACTCCTTGATCTTACGAGTTACCAGCTTCGCGATCTGGAGTCAGTGGAGCTTCCTCCGAGTCTTACAGAGTTAGACTTGACAACCAATCGTTTGTCCGCTTTAGACCCCCGTATCGGCCAACTTCCTAACCTCAAAAAGCTCTCTCTTCGTCAGAACCTCATAACTGATGCCTCTGTTGTGCCTCTTTCCTCTTGGCAACTCATTTCTGACCTCGAGGTATGTATTATTCACTGTACATGTCAACTTGCGGATTCATTACCACTATACTTGTTGATTTGACAAATTGGATCAAAAGGCCTACTGTTTCTCTCAACTCTATTCAAATTTAGTTAAGAACAGAATGCAATGGAAACGGATGATTGTTGTATGACCTATATTAAGGCTGGTGTTTGCCAGAGTCCATTTATTTTAGTTTTACTTGTAGGGATATGAGCGAGTTTTGTAGAAAATCAATTAGTATAAAAATAAAGTATACCTGAACAGAGGAGTTCATATAGATGATTTATAAAGTAAAATTCAATTGAGTTGGAATTTTTTGAGACTTAGTTGACTGATTGATGGGTTTACGTAGAAAAAGATAACCTTATGAGCATACACTCATAAGCTAAAACTGCTTAGAAAGATACAATGATGAATCTTCGGCTATCTGTATGCTTGGTAGTACTAGCGTAGCTTGCACTTTGATTGGTGAATTAAATGATTCCGCAACCTATGTTGCTCGGACTCCAGAAAAGGTATTTTTTGAGGATCCGACATGGGTGCGGCAATATTTTAGGAGAGTCCGAGCAACACTGACCGCAACTTTCTATCTAACCTACTATATAATTGGAAGTGATGTAGGCTTTAATTGATTCATAATATTGATGTACTGTAAGGTTTTTTCTTTTTTGAATTTGATTACTATTTAGGGGATTACTTTCATATTATTTCACCATTAAAATTTTATGATGATTGAATGGATGTGCATTTGGATAATATTTTTCTTCCAATGATAATAGTGATCTTCAACTAGAAATACTGAAACTTTTTTACTGAAGCATTAAATTAGATAAAGTTTTCAGTATATTTGTATGCGTTATAACTGCATACTCATTGATCCAGGTATAATACTGAAACAATGGTAGTTTCTTGTCTAACCTTATCAGTATGGTTCCGACTCTTATTAATGCAATTCAATGATACTGCAATGACTATCTAACCTAAATTGTATTTAAGTAGTGTAGGCTTCTTTTGGATAACCAGTGTTTTAGGAAGTAAGAAGCGGAAAAGAGCGGCGAAGGCTTGCTTCACGCTTCACACACTTTTTTCAAATAAAACGATATTTAGTATAAAAATATAAAATATTAAATATGCATAGATAAATAATCAAGAACTGGATAGAGGTAACATATTCTTAGTTTAAAAAGTAAATAGAGTAGTCAATAATCCTCATCCTCATAAGTCATAACATACAGAGTCAGAGCATAACAGCAGCCAACAAAAGAAAAAAAGAAAAAAAACAGCGCATACACATTACAAACAGAGCAACAGAGCAGAAAGTTAGAACCTCAAATCATTAGAAAAAAGAACAGAGTGACACTACTTAAGTAGCATTACAAATAGAAAATTGAAGGGGAAAAAACACTAGTTACCAGAAAGAGAAAAGAGAAAAAGAGAAACATACTCAGCCTGCAGAGAAACAGAAAGAGAAGAAGAGAAGAGAACTATCCTGAAGCAGCGATCGGCCAAGGAGGGAAAATAATGGGAAAGATGTGCCCAAGTAAATTTACAGAAACTAAAAGAAAACCTTACAGATTTTTTTAAAGAAAAACCCTAATTAATGCTTATGTCATTTAAGGGAGCCTTTTCTCACTTTTATAAAAGCGCGCTTCTCGCTTTTAGGTTAGAAGCACACACTTCCATTATCACTTCGCTTCAAGGCATTAAAGCGTAACCCTGTCACCTCGCTTCTCGCTTAAAGCGAGTGCATCAGTGCTTTTAACTACACTGTGGATAACATTGATGAACCTTAATGAACCATGATTGAAAGATAGTTTGCTTACAATTTTAGGGTTCCTTTTTATTATTTTTTATAAGCCAAAAGCACTCCTTTAATGGACTACCAAGTCTACTTGAAAAATATCTTCATAATATTTGTGTTGTTCAACCGCATATTTAATAGGTAACCCTATTCGCTATACAAAATAGATTCTCTTCTTATTCCAAAGGTATAATGAAATAAAAACAAACTTATGCACGCTAGCTGTCCAGAGGATATCATTTTAAAGAAGAAGAAATGAGTACAAACCTCTTTACATTATTTTAGAATTATTTCCTATTTTTTTTGATAATAAACAATCACCTGTTTCTTTCTATCTATATGATCATGAAGAAGCACATTGGTGTCATTCTCTAAGTTACCTTCCTTTACCTTCAAATCTTCTATAACCTCTAGCTTGTCAGTATTCGTCTTATTCGGCTTGCCTCGTGCGGGTTACCTCTCTTGTGTGGTTTGCGAGCTATTGCATAAGAGTGAGAGTTTTACCCTGTACGCACCAAGAGGACATCAGCTGCAGGTTTTCCTTGTCATAAAAAATAAATGAAAATTCATAAGAGCATTATGACAGATTAAACAAAGAAATCACCTAATATAGCAGTAAAATTTTAATGTAGTGATGTATGATTTATATCCTACCCGTGCCTGCATAGAAAGAACTTGTAACTGTTCGCTGCCTCCTTAAATTATCTACTGTTAAAATTGCATCATGCACTAGGCACCAAGTCAAAAGACCTATTTAGGAGCTTTAGTATCCAAGATATAATTTTGTACCTACCTTTTTTTTTTTTTGAAACTGGTGACATTGTATTTGACATAGTACTTAGGTAGTACTGAAAACCCATATTTACAAAAGCAGAAAGGAAGTATAATCTATCCAAAGAACTGAACAAAATCTAAATAGATCCTACAACGTCTATGATTGGCTCAGTTTCATTGGAGTAGACATTTGTACACCAAAAGCAGAACAACAAAATACACTTAAGCTTAACTTCCTGTAGGTTGTTCCTATTCTCAAAACATCTCTCGTTTCTCTCCCTCCATATAGTCCACCAAATACTAGCCGGGATCATCTGCCATCTTTCTCTATTTGTAGCCCCAACTCCAGCCATCTCCTAACTGAATATAGTCTCATCAATCTTGCTAGGCATACACCAAGATATGCCTCTGAGATTAAGGAAAATTTGCCACAGCTGCCCAGAAAAGTTGCAATGTAGGAAGAGATGTTTCACTGTCTCATTAGCCTTCCCACACAAGGAAAATCTGTTGCACTGAAAGATTCCTCCCTTGGCCACATTATCCAATGTCAAAACTGCTTTCTTGGCTAGTAGCCATGTAAAGCATGCCACTTTGTGTGGCAGTTTGATCCTCCAGATTTGCTTCCAAGGCCATTTGAAGTCTTGAATGTCACCAGTACCTACCTTTTCTCTCTAATCTCTATTAAATCCATGTGTGAATTTATTTGCTGAAAGATTTCCCACTTGCTCCCTTCTTGTTTACCTATCTCCTTATTGAGGGTCTCGAGGGGTAATGTTGTGGGGATTGGTGGTGGATGGAACAGTCTTGAGGGAAAGTGAAAGCCAAGAAGGCTGCTTGTATGGAGTTGGTGGAGAGAAAATACGAGGAGGAAACGAGGGTAAATAGGGAGAGGTGTGGTATATACTCACCAAGGCGAGAGAGAGGAGGGCTCGAGACAAGGAGAGCAGGACCAAGTAAAGTGTATCAAAGATAAGGAAGGTAAAGTATTGGTGGAAAAGGCACACATTAGACGAAGATGACAAACATACTTCCATGTACTCTTGAATGAAGAGGGGGATAGGAATGTTGTGCGGCGATTTAGAGCACTCTGATAATTGTAGAGTTTTTTGGTACTGTAGGGGTATAAAGTTTAAGGGAGTTAAGGAGGTTATTTGTAAGATGAGATGGGGAAGGGCCATCAGAAGACGAGATCCTGGTGGAATTTTGGAAAACACAGAAAAAGGATGTATGGAGGGGCTAACTGGGTTGTTTAATGTTATCTTTAGGACGTCAAAAATGCCCGAAGAGTAAAGGTACAGTATAGTGATCCTGTTGTACAGGAACAAGGGTGATATTCAAAATTGCAATAATGGTAGGGGTATCAAGCTGCTAAGCTTCTTATTGTCTATTTGCTTGTCTGCAGCTGTCTATTTTAATAAGGAGTGCCATTGCCTCCTCTTCACTCCCCTAAAAGGTGACCGCAAATTATTTGCCAAGTTTTATCACATTCAGGCATACCCAAAGTGACACATCCAGTTCCCCTTCAATTCCCCCTACATTGTTTGTATCTTTAGAGGTTCAGTTTCTTCAACTGTCCATATTCCCAAGTTTTTTGTTTCAATCATTTGCATGTCCCCTCTGTTTACAAGGATATCTAGATTTGGTGTCTCCCCTTCAATATTTGTCATGGCATCTTCTTAGTTATCAACATGATGTATATTCAACTATTTCGAGTTCTGAAATTGTAGGTCTTCTTCTCCCTTGTCTTGATTTTCCATGTTTCCAAATTCTCTTTCATTGTTCTGCATGTTAGCCTCTATTTCATCTGTGGTAGGGTCATATTTGTTACATGCATCACAGATATTAGATTTTATAGTGTCTTGAGCCTTGGAAAATTAATCTGGACGGGAATCAGAAACTTCCCTGTTATGAAATGAAGTCTTCTAGGTCACTCCAATAAAAAGACCAGCACCTATCTTCCCCCTTACGTTCCTGCGTCTCATTTCACAAAGGAGAGTCGCAGGTCTGTTTATACTCGTCAAGACCCACGTGATAGCCCATCTTTATATTACAGCTGTTTGACCTAGCAGTTTCATTGTTTCTCTCAAGTACCCAACAATCCTCCTAGATTGACAGTGATTCTTCTCCGGCTATTACAACAGTAGGGATTCACACCAAATTGGTATGAATTATGATGAAGTTTTGCCTTTTCACTTCAATTGTCACCTCATTGAGACACTCTTCCCATCTTCTCTTCTCTTTTATCTTGCCCATTTTAAATGATCCTCTTGTTTTTGAAACGTTTCCTCTGTTCCCAACCTTCCACCATAGTGATCCCTGACTGCTATGAATATTGTTTTCATCCATAAAGTAGGGGTAAGGCTGCGTACAATGTAGACCCAAGCCTCCCCAGATCCCACTTGTGGCATTACACTGGGCATGTTGTTGTTGAAACGCAGAGGTAAACCCATGGATCCAATCCACATGTCGTCTTTCCTGTCTATCTGAGCCATACCCAAAAGACGGATGCCAGCACTACAGAGGGATTTTTTCTTTCTTCCACCTCCATTCTCCTTGTAGAACATGTTCAGCCATGTGTTTTGTTGGGAATCCGAAGAGGAAAAGGTTGTTCCCCTTATCATATGTATTCACGGCAAAAGTGTTCTTCTATGTGCTTACAGACCATCTTCGAACGTCCGCTAATGTTGGCTTTCCATCCATTGTTTTGAAAAAGCCCACCTTGCATCTACGAAGCAGATCAGTCTCACAGTTTGCGATTCCATCAACAACAGCAATTTTGTTAGTTCTCCCTTGGGATGTTTGTAATCAATGACCTTGTATCTTCATTAGTAGATCTGTAGATCTTAATAGCAATATGCCTCTATCCAATATCAATTGTAACCTCTGGGATAATAATGACTGGTATGTTTTCTCCTTGTACACAGAGTATGTTGTTGCTGTTGTATGTTTTCTCTTTGCGCTGTCGCAATGCTTATGAATCTGCTAAACCTGTTGTTGCTAAGCTTCCATCTTCTCGTGTGCTTTTTTCTGTCCTTTGATGCTTCCTGCAATGCAAAACATAACCATTCCATGGGTTTCTTGCTAAACGTGGTTCTACGCATGAGACTCCTGCTTCTTTCCACCAGTCAAACCATACATCCGTCCTTGATTTGGTTCTCGTGATATCATATAACTTGATTCCAGCTGCAAAATAGACTGTTCTCCCCATGTTGCTCTATAATTTTGAATTCTCTAAAAAGGACACCGGGAAACCCAGGTTTCAGTCAGAAAGGAAAAGGTCTTTCTCTAGCCTTGATTAATGTGCCTGGGAGCATTTTCTCTCTTGAACGACATTTTCAGTATCACCATCAGGGTTGGAGGGGTTTTGCTAGGTGCATCTTGGAATTTTATGTATTCTGAGTCATGTTTTTTTTTCCAATCTTATTTCACACTTCAATTCGGAGGATGGGAGGGAATGTGGGCAGAGAATTGAATCTCTTATATTTAGGTCATTTTCTTCTGTTCTCCAGTCTAAGTTGCTTTACAAAATGATCTTAGTTTCTATTTCTTAGTAGAGGGAAAAGATAAGTTCTTTAGCATTTTTAGTGATGTTATAGTGTTGGTTAGTCAGAGATGCTCAACAGATTCACCTCTGCCAGTTGAATACTAGTGTGTAGCGTGACAACTTGGCATTTTTCATCCTTTTAATGTTGTTTTCTAAAGCTCTGAAAGCACCAAAGCTTAAAGAAAATGTTTAGCAACAACTACTTGTTTTCAGACTTGAACTTTGAGCTAGTTTGCTTCTTGTATGGTAGTCTGATCGTAGATGGGAGAGAAACAGACCTTTTAAATTTATCTGAAATCATGCCTGTGGAACTGTTTTCTCCAGGAGCTAGTGCTTAGGGACAATCAGCTGAAGAAAATTCCCAATGTTGTGATATTCAAGAAGCTTCTGGTATTTGATGTCTCTTTCAATGAGATATCATCACTAAGTGGATTGTCCAAGGTCTCCAGTACACTCAGAGAACTATATGTGTCTAAAAATGAAGTCACCAAGATGGAGGAGATTGAGCACTTCCACGAGCTGCAAATACTCGAACTTGGGTCCAATAGATTACGGGTTAGTTTCTCTTGAAGATGACATCAAATGAAATTATATAGTTATCAACACTTATCACTAGTAAATCTTTTATCATAATAGTTTTTTGTAAATGTGAGTACACTATTTTGCTTCCCTGGCTATGTGTTTACCTTTGAAGTGCTTTGTTTCTTGATACAGGTTATGGAGCTTCTGGAGAACTTGAAAAATCTACAAGAACTTTGGCTTGGACGCAATCGTATTCGGACAGTTAATTTGTGCGGTCTGAAATGCATTAAAAAGATTAGCCTGCAGAGCAACCGTCTAACTTCCATGATGGGGTTTCAGGTCCTGATATCTAACAGTTGTGCTTTATCATTGTAGACGACTTCATTTTAAGAGTGAGTTGTTTTGTTGTTTTTCAATCTGCAGGAATGTGTTGCCCTTGAAGAATTATACTTGAGCCATAATGGTATTGTGAAAATGGAAGGTTTGTCTACCTTGGTAAACCTGCGGGTCTTGGATGTATCAGCAAATAAGCTTACAGAAATTAATGACATCGAGAACTTGACTAAGTATGGATTTGTCCTGGCATTTCCAAATGTGTGAATTACTCCTCTAATGCCAGGACTGGTCATCATATTCATGTTCACTTTTGTTTCTTATTGCAGACTAGAAGATTTGTGGCTTA</genome_strand>
        <mrna_strand>GCTCATTCCATTCATGGAAAATCAAAGTGAAAACTCCGATGGAAAACCTAGTTCCGATCCAACGTCGGAATCAGCAACACTCCTTGATCTTACGAGTTACCAGCTTCGCGATCTGGAGTCAGTGGAGCTTCCTCCGAGTCTTACAGAGTTAGACTTGACAACCAATCGTTTGTCCGCTTTAGACCCCCGTATCGGCCAACTTCCTAACCTCAAAAAGCTCTCTCTTCGTCAGAACCTCATAACTGATGCCTCTGTTGTGCCTCTTTCCTCTTGGCAACTCATTTCTGACCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAGTGCTTAGGGACAATCAGCTGAAGAAAATTCCCAATGTTGTGATATTCAAGAAGCTTCTGGTATTTGATGTCTCTTTCAATGAGATATCATCACTAAGTGGATTGTCCAAGGTCTCCAGTACACTCAGAGAACTATATGTGTCTAAAAATGAAGTCACCAAGATGGAGGAGATTGAGCACTTCCACGAGCTGCAAATACTCGAACTTGGGTCCAATAGATTACGG...............................................................................................................................................................GTTATGGAGCTTCTGGAGAACTTGAAAAATCTACAAGAGCTTTGGCTTGGACGCAATCGTATTCGGACAGTTAATTTGTGCGGTCTGAAATGCATTAAAAAGATTAGCCTGCAGAGCAACCGTCTAACTTCCATGATGGGGTTTCAG....................................................................................GAATGTGTTGCCCTTGAAGAATTATACTTGAGCCATAATGGTATTGTGAAAATGGAAGGTTTGTCTACCTTGGTAAACCTGCGGGTCTTGGATGTTTCAGCAAATAAGCTTACAGAAATTAATGACATTGAGAACTTGACTAA................................................................................................ACTAGAAGATTTGTGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206114" ref_strand="+" ref_description="SGN-E206114 [cLEC-29-O19]">
      <seq>ataaggatgcaaagcctcagatttgggagtatgtgccaccattgaaaggtgcttttgtagtgaatcttggtgatatgcttgagcgctggagcaatggtgttttcagatcaacactgcatcgggtccttgcaaatggtcaagaaagattttctattgcatattttatggagccaagtcacgactgtcttgttgaatgcttgccaacctgccaatcaaaagtcaacccaccgaggtatcctccaatcaaatgcgagacgtacttgctccaacgttacaaagacactcatgctgatagaaattcttacaaatgagattcttggtaactggtaaaatacaaatggcgccgcacatttcttgcacatattataatggcgaataatgttggactggcttgtggtttaatctgtatctgcagttacttgagaatgtgtgtgatagaataattgtataatggtttatagtttgaatattcaccatgtaggtagtagtacatttatacaactttgcttacttttgctatccactcatccactttttagtttttagttttagaagaatgagtctttcctatatgcaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="69685" stop="67504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69385" g_stop="69337" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69073" g_stop="69017" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="106" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68807" g_stop="68762" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="152" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68463" g_stop="68384" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68153" g_stop="67804" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="582" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E206114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69385" e_stop="69337"/>
          <exon e_start="69073" e_stop="69017"/>
          <exon e_start="68807" e_stop="68762"/>
          <exon e_start="68463" e_stop="68384"/>
          <exon e_start="68153" e_stop="67804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAGGTGAGACATAATAAGCTTCTTAGTTCTATCCTCTAAAATTGTAAGTAGAACACAAGTTATAACTTGGAAGGTCTGATATTGCTTAGAAACATGTCTTTTCCTGCAGTATCCAACAAAGGCAGCATGCCTTTTGTTAACAATATTAACGTCAAGTCTAAATCATCTACAAAGTGAAATAGAAGTTCCTGCCCTCTATAATCTAATGGACAAATTAGTTTGCAGCAGAAATTATGGGGATATTGTGATTGACATTCTACTTACAGTGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAGGTAATATATAATCGTTCTGCATGTTGAGAATTTAAGTAGATCAGAAGTCTGGCAATATTGGTTTCACTATCTTTCTAAAAGTACCATATAATCCCCCGTCCCCAAATCTTTTGGCAATTTTTTCTAATATCACTAAGTTCCTTCGTTTCTAAAAATTACGCTAATCGCACTATTTTTCTTGTCAGCTAACTTTTTGCTCTTCTGTTCAGATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCTGTAAGCCCTTGAATGGTTTTTGGATGCTTTCATATTGAAATATTATAAATGGCGTAATCATTTAAAGAGAATTGTTCAATTTTACTATCAAACCTTTTAGAAGAGTACTTATTAACCCCGGAAAGAAATGTCTTTAGAATGTTATAATATAATGTATTTGTCTAATTATATAAGTGAAGGGAAGGAGATCTTTCATGGTCACTATATGTGATATAACTTGTTCAAAAGAAAGAAGATAATTAGCTCTTATGGAAATGGGAGAACAAATGATTTTGTCACTCTTCTTCATGTTGTGCAGATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAGGCAAGTAATATATGCCTAAATGCGGCACAAAACTAAGCTATCGTTTGCTCATACATTTCTAAATAGTTTTGGAAAATTATATCTGATGAAGTTTGAACGTGTATTTGTCCGTAGTTTTTGAAAACATATTTCATTGGTTTTTTAAAAATATGAGATTTGCTTGTTAGAAATCCTTTATGTCCTCAGTACTTTTGCTTAATGAAGTTGTTGTCTGGTTGCTGTTCTATCAGGTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAAAGATG</genome_strand>
        <mrna_strand>ATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAGG.......................................................................................................................................................................................................................................................................TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG.................................................................................................................................................................................................................ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT..........................................................................................................................................................................................................................................................................................................ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCAAAAGTCAACCCACCGAG......................................................................................................................................................................................................................................GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428194" ref_strand="-" ref_description="SGN-E428194 [STM-49-L8]">
      <seq>gaaatggtcaagaaagattttctattgcatattttgtggagccaagtcacgactgtcttgttgaatgcttgccaacctgccaatcaaaagtcaacccaccgaggtatcctccaatcaaatgcgagacctacttgctccagcgttacaaagacactcatgctgatagaaattcttacaaatgacattcttggtaactgctaaaatacaaatggcaccgcaacatttcttgcacatattataagggtgaataatgttcgacactatggtttaatctgtatctgaagttacttgagaatgtgtgtgatagaattgtataatggtttataatttgtatggaataggtagtagtacatttatacaactttgcttacttttgctatctactcatccacttttgtaaatcagggaacaactgttgtagaaagacttctacagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="69083" stop="67548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68784" g_stop="68762" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68463" g_stop="68384" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="103" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68153" g_stop="67850" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="396" r_length="293" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E428194" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428194" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68784" e_stop="68762"/>
          <exon e_start="68463" e_stop="68384"/>
          <exon e_start="68153" e_stop="67850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGTCAAGAAAGATTTTCTGTAAGCCCTTGAATGGTTTTTGGATGCTTTCATATTGAAATATTATAAATGGCGTAATCATTTAAAGAGAATTGTTCAATTTTACTATCAAACCTTTTAGAAGAGTACTTATTAACCCCGGAAAGAAATGTCTTTAGAATGTTATAATATAATGTATTTGTCTAATTATATAAGTGAAGGGAAGGAGATCTTTCATGGTCACTATATGTGATATAACTTGTTCAAAAGAAAGAAGATAATTAGCTCTTATGGAAATGGGAGAACAAATGATTTTGTCACTCTTCTTCATGTTGTGCAGATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAGGCAAGTAATATATGCCTAAATGCGGCACAAAACTAAGCTATCGTTTGCTCATACATTTCTAAATAGTTTTGGAAAATTATATCTGATGAAGTTTGAACGTGTATTTGTCCGTAGTTTTTGAAAACATATTTCATTGGTTTTTTAAAAATATGAGATTTGCTTGTTAGAAATCCTTTATGTCCTCAGTACTTTTGCTTAATGAAGTTGTTGTCTGGTTGCTGTTCTATCAGGTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGC-ACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTT</genome_strand>
        <mrna_strand>GAAATGGTCAAGAAAGATTTTCT..........................................................................................................................................................................................................................................................................................................ATTGCATATTTTGTGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCAAAAGTCAACCCACCGAG......................................................................................................................................................................................................................................GTATCCTCCAATCAAATGCGAGACCTACTTGCTCCAGCGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGACATTCTTGGTAACTGCTAAAATACAAATGGCACCGCAACATTTCTTGCACATATTATAAGGGTGAATAATGTTCGAC--AC-TATGGTTTAATCTGTATCTGAAGTTACTTGAGAATGTGTGTGATAG---AATTGTATAATGGTTTATAATTTG--TATGGA--A--TAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCTACTCATCCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227467" ref_strand="+" ref_description="SGN-E227467 [cLEL-30-F24](-)">
      <seq>gcgctggagcaatggtgtttcagatcaacactgcatcgggtccttgcaaatggtcaagaaagattttctattgcatattttatggagccaagtcacgactgtcttgttgaatgcttgccaacctgccaatcaaaagtcaacccaccgaggtatcctccaatcaaatgcgagacgtacttgctccaacgttacaaagacactcatgctgatagaaattcttacaaatgagattcttggtaactggtaaaatacaaatggcgccgcacatttcttgcacatattataatggcgaataatgttggactggcttgtggtttaatctgtatctgcagttacttgagaatgtgtgtgatagaataattgtataatggtttatagtttgaatattcaccatgtaggtagtagtacatttatacaactttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="69121" stop="67576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69040" g_stop="69017" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68807" g_stop="68762" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="69" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68463" g_stop="68384" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="149" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68153" g_stop="67876" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="427" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="444"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E227467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69040" e_stop="69017"/>
          <exon e_start="68807" e_stop="68762"/>
          <exon e_start="68463" e_stop="68384"/>
          <exon e_start="68153" e_stop="67876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGGAGCAATGGTGTTTTCAGGTAATATATAATCGTTCTGCATGTTGAGAATTTAAGTAGATCAGAAGTCTGGCAATATTGGTTTCACTATCTTTCTAAAAGTACCATATAATCCCCCGTCCCCAAATCTTTTGGCAATTTTTTCTAATATCACTAAGTTCCTTCGTTTCTAAAAATTACGCTAATCGCACTATTTTTCTTGTCAGCTAACTTTTTGCTCTTCTGTTCAGATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCTGTAAGCCCTTGAATGGTTTTTGGATGCTTTCATATTGAAATATTATAAATGGCGTAATCATTTAAAGAGAATTGTTCAATTTTACTATCAAACCTTTTAGAAGAGTACTTATTAACCCCGGAAAGAAATGTCTTTAGAATGTTATAATATAATGTATTTGTCTAATTATATAAGTGAAGGGAAGGAGATCTTTCATGGTCACTATATGTGATATAACTTGTTCAAAAGAAAGAAGATAATTAGCTCTTATGGAAATGGGAGAACAAATGATTTTGTCACTCTTCTTCATGTTGTGCAGATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAGGCAAGTAATATATGCCTAAATGCGGCACAAAACTAAGCTATCGTTTGCTCATACATTTCTAAATAGTTTTGGAAAATTATATCTGATGAAGTTTGAACGTGTATTTGTCCGTAGTTTTTGAAAACATATTTCATTGGTTTTTTAAAAATATGAGATTTGCTTGTTAGAAATCCTTTATGTCCTCAGTACTTTTGCTTAATGAAGTTGTTGTCTGGTTGCTGTTCTATCAGGTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTA</genome_strand>
        <mrna_strand>GCGCTGGAGCAATGGTG-TTTCAG.................................................................................................................................................................................................................ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT..........................................................................................................................................................................................................................................................................................................ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCAAAAGTCAACCCACCGAG......................................................................................................................................................................................................................................GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227673" ref_strand="+" ref_description="SGN-E227673 [cLEL-30-D20](-)">
      <seq>gtccttgcaaatggtcaagaaagattttctattgcatattttatggagccaagtcacgactgtcttgttgaatgcttgccaacctgccaatcaaaagtcaacccaccgaggtatcctccaatcaaatgcgagacgtacttgctccaacgttacaaagacactcatgctgatagaaattcttacaaatgagattcttggtaactggtaaaatacaaatggcgccgcacatttcttgcacatattataatggcgaataatgttggactggcttgtggtttaatctgtatctgcagttacttgagaatgtgtgtgatagaataattgtataatggtttatagtttgaatattcaccatgtaggtagtagtacatttatacaactttgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="69091" stop="67576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68791" g_stop="68762" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68463" g_stop="68384" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="110" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68153" g_stop="67876" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="388" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="405"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E227673" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68791" e_stop="68762"/>
          <exon e_start="68463" e_stop="68384"/>
          <exon e_start="68153" e_stop="67876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTGCAAATGGTCAAGAAAGATTTTCTGTAAGCCCTTGAATGGTTTTTGGATGCTTTCATATTGAAATATTATAAATGGCGTAATCATTTAAAGAGAATTGTTCAATTTTACTATCAAACCTTTTAGAAGAGTACTTATTAACCCCGGAAAGAAATGTCTTTAGAATGTTATAATATAATGTATTTGTCTAATTATATAAGTGAAGGGAAGGAGATCTTTCATGGTCACTATATGTGATATAACTTGTTCAAAAGAAAGAAGATAATTAGCTCTTATGGAAATGGGAGAACAAATGATTTTGTCACTCTTCTTCATGTTGTGCAGATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAGGCAAGTAATATATGCCTAAATGCGGCACAAAACTAAGCTATCGTTTGCTCATACATTTCTAAATAGTTTTGGAAAATTATATCTGATGAAGTTTGAACGTGTATTTGTCCGTAGTTTTTGAAAACATATTTCATTGGTTTTTTAAAAATATGAGATTTGCTTGTTAGAAATCCTTTATGTCCTCAGTACTTTTGCTTAATGAAGTTGTTGTCTGGTTGCTGTTCTATCAGGTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTA</genome_strand>
        <mrna_strand>GTCCTTGCAAATGGTCAAGAAAGATTTTCT..........................................................................................................................................................................................................................................................................................................ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCAAAAGTCAACCCACCGAG......................................................................................................................................................................................................................................GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697530" ref_strand="+" ref_description="SGN-E697530 [FA03BA08]">
      <seq>ggaaactatggacaattatcatcaagaggcacttgaggtgacaaaagcagtatcaaggctcatagcccttgcacttgatcttgatgttgacttttttgatcggccagagtttcttggcagaccaattgctactttgcgcctactgcattatgaaggcaaactttctgatccatcaaatggaatttttggagctggtgcacattctgactatggtctgataactcttttggccacagatgatgtctctggccttcagatatgcaaggataaggatgcaaagcctcagatttgggagtatgtgccaccattgaaaggtgcttttgtagtgaatcttggtgatatgcttgagcgctggagcaatggtgttttcagatcaacactgcatcgggtccttgcaaatggtcaagaaagattttctattgcatattttatggagccaagtcacgactgtcttgttgaatgcttgccaacctgccaatcaaaagtcaacccaccgaggtatcctccaatcaaatgcgagacgtacttgctccaacgttacaaagacactcatgctgatagaaattcttacaaatgagattcttggtaactggtaaaatacaaatggcgccgcacatttcttgcacatattataatggcgaataatgttggactggcttgtggtttaatctgtatctgcagttacttgagaatgtgtgtgatagaataattgtataatggtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="70263" stop="67627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69963" g_stop="69931" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69780" g_stop="69659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="155" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69577" g_stop="69477" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69395" g_stop="69337" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="315" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69073" g_stop="69017" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="372" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68807" g_stop="68762" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="418" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68463" g_stop="68384" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="498" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68153" g_stop="67927" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="725" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E697530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69963" e_stop="69931"/>
          <exon e_start="69780" e_stop="69659"/>
          <exon e_start="69577" e_stop="69477"/>
          <exon e_start="69395" e_stop="69337"/>
          <exon e_start="69073" e_stop="69017"/>
          <exon e_start="68807" e_stop="68762"/>
          <exon e_start="68463" e_stop="68384"/>
          <exon e_start="68153" e_stop="67927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAGGTAAATATGGGGAAATATCACCAGAGCCATCATGCTTTTCTATTTGAAGTGAACTGATATTTTGATTTCATGTCAAACTAGGCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAGGTAAATCATTAAAGTACTTTCAATTTTCTAGATATATTCTTCATTGTTGATGTAGAGCATTAACTCTTAAAAGTCTTTCAGATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAGGTGAGACATAATAAGCTTCTTAGTTCTATCCTCTAAAATTGTAAGTAGAACACAAGTTATAACTTGGAAGGTCTGATATTGCTTAGAAACATGTCTTTTCCTGCAGTATCCAACAAAGGCAGCATGCCTTTTGTTAACAATATTAACGTCAAGTCTAAATCATCTACAAAGTGAAATAGAAGTTCCTGCCCTCTATAATCTAATGGACAAATTAGTTTGCAGCAGAAATTATGGGGATATTGTGATTGACATTCTACTTACAGTGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAGGTAATATATAATCGTTCTGCATGTTGAGAATTTAAGTAGATCAGAAGTCTGGCAATATTGGTTTCACTATCTTTCTAAAAGTACCATATAATCCCCCGTCCCCAAATCTTTTGGCAATTTTTTCTAATATCACTAAGTTCCTTCGTTTCTAAAAATTACGCTAATCGCACTATTTTTCTTGTCAGCTAACTTTTTGCTCTTCTGTTCAGATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCTGTAAGCCCTTGAATGGTTTTTGGATGCTTTCATATTGAAATATTATAAATGGCGTAATCATTTAAAGAGAATTGTTCAATTTTACTATCAAACCTTTTAGAAGAGTACTTATTAACCCCGGAAAGAAATGTCTTTAGAATGTTATAATATAATGTATTTGTCTAATTATATAAGTGAAGGGAAGGAGATCTTTCATGGTCACTATATGTGATATAACTTGTTCAAAAGAAAGAAGATAATTAGCTCTTATGGAAATGGGAGAACAAATGATTTTGTCACTCTTCTTCATGTTGTGCAGATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAGGCAAGTAATATATGCCTAAATGCGGCACAAAACTAAGCTATCGTTTGCTCATACATTTCTAAATAGTTTTGGAAAATTATATCTGATGAAGTTTGAACGTGTATTTGTCCGTAGTTTTTGAAAACATATTTCATTGGTTTTTTAAAAATATGAGATTTGCTTGTTAGAAATCCTTTATGTCCTCAGTACTTTTGCTTAATGAAGTTGTTGTCTGGTTGCTGTTCTATCAGGTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTAT</genome_strand>
        <mrna_strand>GGAAACTATGGACAATTATCATCAAGAGGCACT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG.................................................................................GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG.................................................................................ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAGG.......................................................................................................................................................................................................................................................................TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG.................................................................................................................................................................................................................ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT..........................................................................................................................................................................................................................................................................................................ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCAAAAGTCAACCCACCGAG......................................................................................................................................................................................................................................GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726865" ref_strand="+" ref_description="SGN-E726865 [LA13AC02]">
      <seq>gaagagaagaaaactaattgttgatttcatgaataataaggcaggaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattatccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccctgcctggatggaaggaaactatggagaagtatcatcaagaggcacttgaggtgacaaaagcagtatcaaggctcatagcccttgcacttgatcttgatgttgacttttttgatcggccagagtttcttggcagaccaattgctactttgcgcctactgcattatgaaggcaaactttctgatccatcaaatggaatttttggagctggtgcacattctgactatggtctgataactcttttggccacagatgatgtctctggccttcagatatgcaaggataaggatgcaaagcctcagatttgggagtatgtgccaccattgaaaggtgcttttgtagtgaatcttggtgatatgcttgagcgctggagcaatggtgttttcagatcaacactgcatcgggtccttgcaaatggtcaagaaagattttctattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72340" stop="68460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72040" g_stop="71890" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="347" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="446" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69982" g_stop="69931" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="498" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69780" g_stop="69659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="620" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69577" g_stop="69477" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="721" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69395" g_stop="69337" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="780" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69073" g_stop="69017" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="837" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68807" g_stop="68762" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="883" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E726865" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72040" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69931"/>
          <exon e_start="69780" e_stop="69659"/>
          <exon e_start="69577" e_stop="69477"/>
          <exon e_start="69395" e_stop="69337"/>
          <exon e_start="69073" e_stop="69017"/>
          <exon e_start="68807" e_stop="68762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAGGTAAATATGGGGAAATATCACCAGAGCCATCATGCTTTTCTATTTGAAGTGAACTGATATTTTGATTTCATGTCAAACTAGGCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAGGTAAATCATTAAAGTACTTTCAATTTTCTAGATATATTCTTCATTGTTGATGTAGAGCATTAACTCTTAAAAGTCTTTCAGATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAGGTGAGACATAATAAGCTTCTTAGTTCTATCCTCTAAAATTGTAAGTAGAACACAAGTTATAACTTGGAAGGTCTGATATTGCTTAGAAACATGTCTTTTCCTGCAGTATCCAACAAAGGCAGCATGCCTTTTGTTAACAATATTAACGTCAAGTCTAAATCATCTACAAAGTGAAATAGAAGTTCCTGCCCTCTATAATCTAATGGACAAATTAGTTTGCAGCAGAAATTATGGGGATATTGTGATTGACATTCTACTTACAGTGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAGGTAATATATAATCGTTCTGCATGTTGAGAATTTAAGTAGATCAGAAGTCTGGCAATATTGGTTTCACTATCTTTCTAAAAGTACCATATAATCCCCCGTCCCCAAATCTTTTGGCAATTTTTTCTAATATCACTAAGTTCCTTCGTTTCTAAAAATTACGCTAATCGCACTATTTTTCTTGTCAGCTAACTTTTTGCTCTTCTGTTCAGATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT</genome_strand>
        <mrna_strand>GAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTATCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG.................................................................................GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG.................................................................................ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAGG.......................................................................................................................................................................................................................................................................TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG.................................................................................................................................................................................................................ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693207" ref_strand="+" ref_description="SGN-E693207 [LH_Ea10L13]">
      <seq>cctctgtgccgaattcggcacgaggggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcgggatttttctatgttgtcaatcatggtattagccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccttgcctggatggaaggaaactatggagaagtatcatcaagaggcaattgaggtgacaaaagcagtatcaaggctcatagcccttgcacttgatcttgatgttgacttttttgatcggccagagtttcttggcagaccaattgctactttgcgcctgctgcattatgaaggcaaactttctgatccatcaaatggaatttttggagctggtgcacattctgactatggtctgataactcttttggccacagatgatgtctctggccttcagatatgcaaggataaggatgcaaagcctcagatttgggagtatgtgccaccattgaaaggtgcttttgtagtgaatcttggtgatatgcttgagcgctggagcaatggtgttttcagatcaacactgcatcgggtcccttgcaaatggtcaaggaaagattttctattgcatattttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72293" stop="68460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71992" g_stop="71890" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="129" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="325" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="424" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69982" g_stop="69931" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="476" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69780" g_stop="69659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="598" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69577" g_stop="69477" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="699" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69395" g_stop="69337" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="758" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69073" g_stop="69017" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="815" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68807" g_stop="68762" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="863" r_length="48" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E693207" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71992" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69931"/>
          <exon e_start="69780" e_stop="69659"/>
          <exon e_start="69577" e_stop="69477"/>
          <exon e_start="69395" e_stop="69337"/>
          <exon e_start="69073" e_stop="69017"/>
          <exon e_start="68807" e_stop="68762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAGGTAAATATGGGGAAATATCACCAGAGCCATCATGCTTTTCTATTTGAAGTGAACTGATATTTTGATTTCATGTCAAACTAGGCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAGGTAAATCATTAAAGTACTTTCAATTTTCTAGATATATTCTTCATTGTTGATGTAGAGCATTAACTCTTAAAAGTCTTTCAGATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAGGTGAGACATAATAAGCTTCTTAGTTCTATCCTCTAAAATTGTAAGTAGAACACAAGTTATAACTTGGAAGGTCTGATATTGCTTAGAAACATGTCTTTTCCTGCAGTATCCAACAAAGGCAGCATGCCTTTTGTTAACAATATTAACGTCAAGTCTAAATCATCTACAAAGTGAAATAGAAGTTCCTGCCCTCTATAATCTAATGGACAAATTAGTTTGCAGCAGAAATTATGGGGATATTGTGATTGACATTCTACTTACAGTGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAGGTAATATATAATCGTTCTGCATGTTGAGAATTTAAGTAGATCAGAAGTCTGGCAATATTGGTTTCACTATCTTTCTAAAAGTACCATATAATCCCCCGTCCCCAAATCTTTTGGCAATTTTTTCTAATATCACTAAGTTCCTTCGTTTCTAAAAATTACGCTAATCGCACTATTTTTCTTGTCAGCTAACTTTTTGCTCTTCTGTTCAGATCAACACTGCATCGGGT-CCTTGCAAATGGTCAA-GAAAGATTTTCT</genome_strand>
        <mrna_strand>GAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCGGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCTTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCAAT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTGCTGCATTATGAAG.................................................................................GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG.................................................................................ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAGG.......................................................................................................................................................................................................................................................................TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG.................................................................................................................................................................................................................ATCAACACTGCATCGGGTCCCTTGCAAATGGTCAAGGAAAGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210996" ref_strand="+" ref_description="SGN-E210996 [cLEC-69-L14]">
      <seq>agaaatatatttgtgtcttagagattcttcgagacattgggtggtaagagattctttggggcccattgttctctccgtgaatccttgtttatggtggagaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattagccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccctgcctggatggaaggaaactatggagaagtatcatcaagaggcacttgaggtgacaaaagcagtatcaaggctcatagcccttgcacttgatcttgatgttgacttttttgatcggccagagtttcttggcagaccaattgctactttgcgcctactgcattatgaaggcaaactttctgatccatcaaatggaatttttggagctggtgcacattctgactatggtctgataactcttttggccacagatgatgtctctggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73978" stop="69180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73678" g_stop="73581" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73580" i_stop="71997" i_length="1584">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71996" g_stop="71890" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="205" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="401" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="500" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69982" g_stop="69931" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="552" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69780" g_stop="69659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="674" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69577" g_stop="69480" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E210996" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73678" e_stop="73581"/>
          <exon e_start="71996" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69931"/>
          <exon e_start="69780" e_stop="69659"/>
          <exon e_start="69577" e_stop="69480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATATTTGTGTCTTAGAGATTCTTCGAGACATTGGGTGGTAAGAGATTCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGAGTAAGTTATATATAATTTCCCCTTTTGTTTGTTAATTTGTCTTGTGTTAGCTGCTACTTGTGCCCTCGATCTTTCACTTATTTCTGTATATATACATACATGTATGGATTTTTATGTATGAAATCACTGATTTTTGTTATTTCTTGTACATGTTGTTTCCATTGATGAAATATGGATGGATATGATCCAAATGTTTGTTTACAATAATTGATAGGTAATTTTTATTAATTAATGATTATAAAGCTAACCTTCTTACCAGCTTGAGCATATGCTGCGTTTCCTTGTCCATCCATGTCTGATAACTACTTTTCTTGGATTCTTCCTTCTGGGGGGACATTATGTTCCAGACTACCTTTCACCTTAGGTTTGGTGGCTTTCTGAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCCAAACCATACATCAATTAATCACTGATACTACATGTATAAACAATCCAAAAGATTCACTAGTGATGATATCCACCTCTTGTTGACTACCAATTATTGCTTGTGATTTGTAAACCCTATCAATTAGCTTGGATAAACATAACCATGATAATCTATCATAACTATTTTCCACATCTAACTTCATAACCACATTAGTGGTCTTGGTTCTTAATATGATTTGTTGACACTTCTTCCCTTCACTAATCCAGCTCGATATTATTCTCTAATTCAGTCTCAAACTGTACCTCATGCACCTTATAACATCTTGCACTCTTTCTATTTCCTGCAATATATTCTTACTGCATTGGGTCAGCGCTCTTGTGTGTGATCCAGTTGGTCTTCCTTCACTATGTCTAGGAAAGTTTCATTCTTAATAGGAGTGTTATTTCTAGAATAAGATATCAAAGGGGGGCATACTTCTAATCAAGTGAGTAATGTCAACTACTCTCAAGTAATTGGTTGCTCAAACATCTTTCGGAAATACAATCCTCATTGATCTGACCATTGCACCATGCTCCCCTTGAAGCCTGACTCATCTACTTCAACATGCTCTATACATTCTTGTATCTCCTCAACCCCAACAGTTAATCAACCATGTTTTTATTCAAGTGATGTAATAACATCAAACTCCAAAGACGTGCAATCATCCAAATCAAAAACTTTGAGGTGGTTTACATAAAGGAAGAAGAGAGTTCTCAAAAGTATTCTATTGTCCCGTTTTATTTTATGTCTAAGTGTTAAAAAGAAAATCAAAAGATTTTTCTAACTTAAATCTTGATATGCCATAATTGTTTGAAATTGTAAAATCATATTATCAAGTTTAAAATAAAATCACATTGGCAAGTCCATTAGCACATTAGTGAAGCCTTCGGAGTTAAAACCGAGGAAAGAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAGGTAAATATGGGGAAATATCACCAGAGCCATCATGCTTTTCTATTTGAAGTGAACTGATATTTTGATTTCATGTCAAACTAGGCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTT</genome_strand>
        <mrna_strand>AGAAATATATTTGTGTCTTAGAGATTCTTCGAGACATTGGGTGGTAAGAGATTCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG.................................................................................GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255033" ref_strand="+" ref_description="SGN-E255033 [cLEG-31-I23]">
      <seq>gcccattgttctctccgtgaatcgcgtgtttatggtggagcaggaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattagccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccctgcctggatggaaggaaactatggagaagtatcatcaagaggcacttgaggtgacaaaagcagtatcaaggctcatagcccttgcacttgatcttgatgttgacttttttgatcggccagagtttcttggcagaccaattgctactttgcgcctactgcattatgaaggcaaactttctgatccatcaaatggaatttttggagctggtgcacattctgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73918" stop="69223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73618" g_stop="73581" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73580" i_stop="72001" i_length="1580">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72000" g_stop="71890" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="150" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="346" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="445" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69982" g_stop="69931" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="497" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69780" g_stop="69659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="619" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69577" g_stop="69523" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="674" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E255033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73618" e_stop="73581"/>
          <exon e_start="72000" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69931"/>
          <exon e_start="69780" e_stop="69659"/>
          <exon e_start="69577" e_stop="69523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATTGTTCTCTCCGTGAATC-CTTGTTTATGGTGGAGTAAGTTATATATAATTTCCCCTTTTGTTTGTTAATTTGTCTTGTGTTAGCTGCTACTTGTGCCCTCGATCTTTCACTTATTTCTGTATATATACATACATGTATGGATTTTTATGTATGAAATCACTGATTTTTGTTATTTCTTGTACATGTTGTTTCCATTGATGAAATATGGATGGATATGATCCAAATGTTTGTTTACAATAATTGATAGGTAATTTTTATTAATTAATGATTATAAAGCTAACCTTCTTACCAGCTTGAGCATATGCTGCGTTTCCTTGTCCATCCATGTCTGATAACTACTTTTCTTGGATTCTTCCTTCTGGGGGGACATTATGTTCCAGACTACCTTTCACCTTAGGTTTGGTGGCTTTCTGAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCCAAACCATACATCAATTAATCACTGATACTACATGTATAAACAATCCAAAAGATTCACTAGTGATGATATCCACCTCTTGTTGACTACCAATTATTGCTTGTGATTTGTAAACCCTATCAATTAGCTTGGATAAACATAACCATGATAATCTATCATAACTATTTTCCACATCTAACTTCATAACCACATTAGTGGTCTTGGTTCTTAATATGATTTGTTGACACTTCTTCCCTTCACTAATCCAGCTCGATATTATTCTCTAATTCAGTCTCAAACTGTACCTCATGCACCTTATAACATCTTGCACTCTTTCTATTTCCTGCAATATATTCTTACTGCATTGGGTCAGCGCTCTTGTGTGTGATCCAGTTGGTCTTCCTTCACTATGTCTAGGAAAGTTTCATTCTTAATAGGAGTGTTATTTCTAGAATAAGATATCAAAGGGGGGCATACTTCTAATCAAGTGAGTAATGTCAACTACTCTCAAGTAATTGGTTGCTCAAACATCTTTCGGAAATACAATCCTCATTGATCTGACCATTGCACCATGCTCCCCTTGAAGCCTGACTCATCTACTTCAACATGCTCTATACATTCTTGTATCTCCTCAACCCCAACAGTTAATCAACCATGTTTTTATTCAAGTGATGTAATAACATCAAACTCCAAAGACGTGCAATCATCCAAATCAAAAACTTTGAGGTGGTTTACATAAAGGAAGAAGAGAGTTCTCAAAAGTATTCTATTGTCCCGTTTTATTTTATGTCTAAGTGTTAAAAAGAAAATCAAAAGATTTTTCTAACTTAAATCTTGATATGCCATAATTGTTTGAAATTGTAAAATCATATTATCAAGTTTAAAATAAAATCACATTGGCAAGTCCATTAGCACATTAGTGAAGCCTTCGGAGTTAAAACCGAGGAAAGAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAGGTAAATATGGGGAAATATCACCAGAGCCATCATGCTTTTCTATTTGAAGTGAACTGATATTTTGATTTCATGTCAAACTAGGCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTA</genome_strand>
        <mrna_strand>GCCCATTGTTCTCTCCGTGAATCGCGTGTTTATGGTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG.................................................................................GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484785" ref_strand="+" ref_description="SGN-E484785 [cSTE-15-C14]">
      <seq>atggaattgcttctgcaaacatttctgctttacattgtatcgatctctccagccctgacattcatacctctgttactctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattagccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagattcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaaatacccgaagatgatcctgaatctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccttgcctggatggaaggaaactatggagaagtatcatcaagaggcacttgaggtgacaaaagcagtatcaaggctcattgcccttgcacttgatcttgatgttgacttttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72278" stop="69415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71978" g_stop="71890" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="285" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="384" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69982" g_stop="69931" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="436" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69780" g_stop="69715" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="502" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E484785" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71978" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69931"/>
          <exon e_start="69780" e_stop="69715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACTGTGAGTTACTGTCTTCCAATCATATTCGTTATATTTTATACGTTCTCATTATCTTGTTAATGAGCATATTGCATTAGATCTTCAAGATTGTCTCATCCGCTGCATTTCTCATTTTCCATCATTTTGCTTCCTTTCTTTGGCCTGCATCAGTGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGA</genome_strand>
        <mrna_strand>ATGGAATTGCTTCTGCAAACATTTCTGCTTTACATTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTACTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGATTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAATACCCGAAGATGATCCTGAATCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCTTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT......................................................................................................................................................TGAGGTGACAAAAGCAGTATCAAGGCTCATTGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251064" ref_strand="+" ref_description="SGN-E251064 [cLEG-17-M15]">
      <seq>tctttggggcccattgttctctccgtgaatccttgtttatggtggagcaggaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattagccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttagaaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcagagaccattttatgggtcaaatgtgtggcctactgcaggtaccctgcctggatggaaggaaactatggagaagtatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73926" stop="69640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73626" g_stop="73581" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73580" i_stop="72001" i_length="1580">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72000" g_stop="71890" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="157" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="353" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="452" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69982" g_stop="69940" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="495" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E251064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73626" e_stop="73581"/>
          <exon e_start="72000" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGAGTAAGTTATATATAATTTCCCCTTTTGTTTGTTAATTTGTCTTGTGTTAGCTGCTACTTGTGCCCTCGATCTTTCACTTATTTCTGTATATATACATACATGTATGGATTTTTATGTATGAAATCACTGATTTTTGTTATTTCTTGTACATGTTGTTTCCATTGATGAAATATGGATGGATATGATCCAAATGTTTGTTTACAATAATTGATAGGTAATTTTTATTAATTAATGATTATAAAGCTAACCTTCTTACCAGCTTGAGCATATGCTGCGTTTCCTTGTCCATCCATGTCTGATAACTACTTTTCTTGGATTCTTCCTTCTGGGGGGACATTATGTTCCAGACTACCTTTCACCTTAGGTTTGGTGGCTTTCTGAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCCAAACCATACATCAATTAATCACTGATACTACATGTATAAACAATCCAAAAGATTCACTAGTGATGATATCCACCTCTTGTTGACTACCAATTATTGCTTGTGATTTGTAAACCCTATCAATTAGCTTGGATAAACATAACCATGATAATCTATCATAACTATTTTCCACATCTAACTTCATAACCACATTAGTGGTCTTGGTTCTTAATATGATTTGTTGACACTTCTTCCCTTCACTAATCCAGCTCGATATTATTCTCTAATTCAGTCTCAAACTGTACCTCATGCACCTTATAACATCTTGCACTCTTTCTATTTCCTGCAATATATTCTTACTGCATTGGGTCAGCGCTCTTGTGTGTGATCCAGTTGGTCTTCCTTCACTATGTCTAGGAAAGTTTCATTCTTAATAGGAGTGTTATTTCTAGAATAAGATATCAAAGGGGGGCATACTTCTAATCAAGTGAGTAATGTCAACTACTCTCAAGTAATTGGTTGCTCAAACATCTTTCGGAAATACAATCCTCATTGATCTGACCATTGCACCATGCTCCCCTTGAAGCCTGACTCATCTACTTCAACATGCTCTATACATTCTTGTATCTCCTCAACCCCAACAGTTAATCAACCATGTTTTTATTCAAGTGATGTAATAACATCAAACTCCAAAGACGTGCAATCATCCAAATCAAAAACTTTGAGGTGGTTTACATAAAGGAAGAAGAGAGTTCTCAAAAGTATTCTATTGTCCCGTTTTATTTTATGTCTAAGTGTTAAAAAGAAAATCAAAAGATTTTTCTAACTTAAATCTTGATATGCCATAATTGTTTGAAATTGTAAAATCATATTATCAAGTTTAAAATAAAATCACATTGGCAAGTCCATTAGCACATTAGTGAAGCCTTCGGAGTTAAAACCGAGGAAAGAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCA</genome_strand>
        <mrna_strand>TCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG..............................................................................................................GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726109" ref_strand="+" ref_description="SGN-E726109 [LA10BD07]">
      <seq>gaagagaagaaaactaattgttgatttcatgaataataaggcaggaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattatccaggagtttatggatgaggttttcgctcaaagcaaaaagctctttgatcttcctttggaagagaagatgaagcttcttataaatgaaaaacatcggggctacactcctagtctagatgaacatttggatcctgacaatcaaataaatggtgactataaggagggatattacattggtgttgaagtacctgaagatgatcctgaagctcacagaccattttatgggtcagatgtgtggcctactgcaggtaccctgcctggatggaaggagactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72340" stop="69654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72040" g_stop="71890" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70992" g_stop="70797" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="347" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70191" g_stop="70093" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="446" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110">
            <donor d_prob="0.739" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69982" g_stop="69954" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="475" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E726109" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72040" e_stop="71890"/>
          <exon e_start="70992" e_stop="70797"/>
          <exon e_start="70191" e_stop="70093"/>
          <exon e_start="69982" e_stop="69954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATGGTATGTATCTATCATCTCTCTTGTTCATTTTATTGTTGGATTAGAGTTAGAGGGGATATTTGCCTTATTACTACCCAATGTTCACTGCACTACCAGTAGGATTAAACTAATTAAGATGCCCAAAATAGATATTCTTACAAACAAAAGATAACAATTCTCACCTAGACACCTACCTGAGAGAGAAAGAGTCAGAGAGAATGCTCATAGGTGTAGGATGGTTAGACTCTGATTCTCTTTACTCTCGCAGTATAAGAAATATAAGTATCTAATCGTAGAACAGTGTGAAAAGCTACTTAAGCAGAGGCTACCAAGTGATTAGTCAAGATAGAGCTCACACAATAGTTGTCTGTATTATCTGAAAATGAGAATAGTGATGCATGCTTTTTATTCATATTGAATGGTATATGGTTTACTATCTTGTGTGAGGTCTTCCCATTACAAAGTTTTTATGTATTATTAATACACCATTTACGAGATTACAGGTAGCTGCATTCACACTGTAATATCTGCATTTGTCTTTTCACTTTCTTTAATAACTGTATGGGAATAACAAGTAGGAAAAAGCTACTTCTTCACTTAGTTGGCTGCTTTTTGATGGGCCTTAGGTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAGGTAACTTTCGAGGGATTTCTAGTCATTTACCTGAGGAATACACCATGACCTTCCTAAACGTCAACATTTTATGAAGCACTTAGAAGTTACATTGGTTAGTATTCTGAAAGGTACCCTGCCTGGATGGAAGGAAACTATG</genome_strand>
        <mrna_strand>GAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTATCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTATAAATGAAAAACATCGGGGCTACACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCACAGACCATTTTATGGGTCAGATGTGTGGCCTACTGCAG..............................................................................................................GTACCCTGCCTGGATGGAAGGAGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289627" ref_strand="+" ref_description="SGN-E289627 [cLET-4-J5]">
      <seq>gccctcgatctttcacttatttctgtatatatacatacatgaaggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcaatcatggtattagccaggagtttatggatgagggtttcgctcaaagcaaaaagctctttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73819" stop="70595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73519" g_stop="73480" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73479" i_stop="71997" i_length="1483">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71996" g_stop="71890" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="147" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70992" g_stop="70895" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="245" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E289627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73519" e_stop="73480"/>
          <exon e_start="71996" e_stop="71890"/>
          <exon e_start="70992" e_stop="70895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCGATCTTTCACTTATTTCTGTATATATACATACATGTATGGATTTTTATGTATGAAATCACTGATTTTTGTTATTTCTTGTACATGTTGTTTCCATTGATGAAATATGGATGGATATGATCCAAATGTTTGTTTACAATAATTGATAGGTAATTTTTATTAATTAATGATTATAAAGCTAACCTTCTTACCAGCTTGAGCATATGCTGCGTTTCCTTGTCCATCCATGTCTGATAACTACTTTTCTTGGATTCTTCCTTCTGGGGGGACATTATGTTCCAGACTACCTTTCACCTTAGGTTTGGTGGCTTTCTGAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCAATTGGTATATATAACTCTTCCCACCCACTCTACTATTCCAAACCATACATCAATTAATCACTGATACTACATGTATAAACAATCCAAAAGATTCACTAGTGATGATATCCACCTCTTGTTGACTACCAATTATTGCTTGTGATTTGTAAACCCTATCAATTAGCTTGGATAAACATAACCATGATAATCTATCATAACTATTTTCCACATCTAACTTCATAACCACATTAGTGGTCTTGGTTCTTAATATGATTTGTTGACACTTCTTCCCTTCACTAATCCAGCTCGATATTATTCTCTAATTCAGTCTCAAACTGTACCTCATGCACCTTATAACATCTTGCACTCTTTCTATTTCCTGCAATATATTCTTACTGCATTGGGTCAGCGCTCTTGTGTGTGATCCAGTTGGTCTTCCTTCACTATGTCTAGGAAAGTTTCATTCTTAATAGGAGTGTTATTTCTAGAATAAGATATCAAAGGGGGGCATACTTCTAATCAAGTGAGTAATGTCAACTACTCTCAAGTAATTGGTTGCTCAAACATCTTTCGGAAATACAATCCTCATTGATCTGACCATTGCACCATGCTCCCCTTGAAGCCTGACTCATCTACTTCAACATGCTCTATACATTCTTGTATCTCCTCAACCCCAACAGTTAATCAACCATGTTTTTATTCAAGTGATGTAATAACATCAAACTCCAAAGACGTGCAATCATCCAAATCAAAAACTTTGAGGTGGTTTACATAAAGGAAGAAGAGAGTTCTCAAAAGTATTCTATTGTCCCGTTTTATTTTATGTCTAAGTGTTAAAAAGAAAATCAAAAGATTTTTCTAACTTAAATCTTGATATGCCATAATTGTTTGAAATTGTAAAATCATATTATCAAGTTTAAAATAAAATCACATTGGCAAGTCCATTAGCACATTAGTGAAGCCTTCGGAGTTAAAACCGAGGAAAGAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCT</genome_strand>
        <mrna_strand>GCCCTCGATCTTTCACTTATTTCTGTATATATACATACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGGTTTCGCTCAAAGCAAAAAGCTCTTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251452" ref_strand="-" ref_description="SGN-E251452 [cLEG-9-D1]">
      <seq>actagggaacatgaagaatgatggaattgattctgccaacatttctgctttacactgtatcgatctctccagccctgacattcatacctctgtttctctcctcaaacaggcttgcttagattcaggatttttctatgttgtcactcatggtattagccaggagtttatggatgaggttttcgctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72295" stop="70613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71998" g_stop="71890" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70992" g_stop="70913" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="189" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E251452" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251452" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71998" e_stop="71890"/>
          <exon e_start="70992" e_stop="70913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAGGTACCTCTCTCTCTCTCTCTCTTATATGTATACAGAGGCGGTTCCACATACAAAATTAGGGGTACATGTGCACCCCTTAACTTTGGAAAAAATCACGTGTATAACAGAAACTAGCAATATATATTATGCATTTGTATGTATTCATGTGTGTTTAATGAAGAAGAGTTATGATCTTTATTGGCTATTTATCGAGGCTGATGGTAGCATCTGTAAAAGAACAACTTACCATATAACGTTTGAGGAGAATGAATGAGCTGTGTTGTGAAATTCACCTGAATTAGATACAAAGAGTCTAGGTTCCCTTCTTTTTATATAAAAACACCATTTTCCGAATAGTCTATATTTTTTAGGAGATTTAATCTGTTGGACAAATTGAAATTTCTGTTAAAACATGGAATCAACAATTATTTTGAAGCCCTCTCTTTGTCCGTTACTTACTTTGATGAACATGTTTTAAGCTAACTACATGTCGACCGTCTAACCAGAGCATGTGGTCACTCGTTCCTCACTTGTTTGGACGAGCTTCAGATTGGATTCAACACTAGCTCTTTCCGGCCTTCACTAGCTCTTTGCTTGCTTTTCAACTAACTACTGTTCGCAGTGGAAGTGCTCTTAATCATCTCATTTTTGTCCTGTCAAAACCTTTCAACATGAAGATTATTTTCTTTCCACCTAGCAGGAAATTACCAAACTGTAAATGATCAAATGTTGTCTCTCAGACAATATTTCCCCAAGTTCCCGCCCCCTGCAAAGGATAGGACCTTTATTAACTACATTTTATAGAATCACCACTATCTCTCCTTTTTTGGTCACATTTCCTTTCTTTCATCTTCATTTGTTTTCCATTGAGATATCTTATTGCTCCATTAGCTCATATGTGTTTGCTATTGGTCACAGGCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAG</genome_strand>
        <mrna_strand>ACTAGGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCACTCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723763" ref_strand="+" ref_description="SGN-E723763 [FC21DB11]">
      <seq>accggccgccggcacgctcgccggaattatctttggtgagagatcagtatcacagaatttggctcgccagcgaattctatgaagcgatctaaggatccttttgaggctacttttgaggagcaggatgactcaccccctgaatcccctgctggaaccgatgagaatgaaggccaagatcaaggtgcagttggtgttaatatgaatgaaggtgacgatgttaataccgattctcgtgaaaaaccttcaacatctaaagctacatcagtctctgttagtactgctggtccaattagcaaacccaaagaggaagatgaggaggaagaggaagaaagcatggatgtgcagttaggaaaactctcatcaagtagtgatcctgacaaactggcgaagatgcagtccatcttatcccaatttacagaggagcagatgagtagatatgaatcttttaggagatctggatttcagaaatccaacatgaagcggttgctgaccaacatcacaggaagtgcaaagatatctattcctatgacaattgtggtgtctgggatagcaaaaatgtttgtcggtgagcttattgaaacagctaaaatggtgatggcagagagaaaagatactggcccaatcaggccatgccacataagagaagcatatagaaggttaaaacttgaaggcaagattccaaaaaaatcagtgccaaggcttttccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80641" stop="81941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80944" g_stop="81641" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="709" r_length="696" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E723763" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80944" e_stop="81641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCCGCCGGCACTCTCGTCGGGAGAGAGATCAGAATCACAGAATTTTGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGCAGAGAGAAAAGATACAGGCCCAATCAGGCCATGCCACATAAGAGAAGCATATAGAAGGTTAAAACTTGAAGGCAAGATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGT</genome_strand>
        <mrna_strand>A-CGCTCGCCGGAATTATCTT-TGGTGAGAGATCAGTATCACAGAATTTGGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGACTCACCCCCTGAATCCCCTGCTGGAACCGATGAGAATGAAGGCCAAGATCAAGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACATCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGCAGAGAGAAAAGATACTGGCCCAATCAGGCCATGCCACATAAGAGAAGCATATAGAAGGTTAAAACTTGAAGGCAAGATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301685" ref_strand="+" ref_description="SGN-E301685 [cLEW-23-B24]">
      <seq>ggaattatctttggtgagagagcagtttggcagaatttggctcgccagcgaattctatgaagcgatctaaggatccttttgaggcttcttttgaggagcaggatgactcaccccctgaatcccctgctggaaccgatgagaatgaaggccaagatcaaggtgcagttggtgttaatatgaatgaaggtgacgatgttaataccgattctcgtgaaaaaccttcaacatctaaagctacatcagtctctgttagtactgctggtccaattagcaaacccaaagaggaagatgaggaggaagaggaagaaagcatggatgtgcagtttggaaaactctcatcaagtagtgatcctgacaaactggcgaagatgcagtccatcttatcccaatttacagaggagcagatgagttgatatgaatcttttacgagatctggatttcagaaattcaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80654" stop="81710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80954" g_stop="81410" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E301685" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80954" e_stop="81410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTCTCGTCGGGAGAGAGATCAGAATCACAGAATTTTGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGA</genome_strand>
        <mrna_strand>GGAATTATC-TTTGGTGAGAGAGCAGTTTGGCAGAATTTGGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTTCTTTTGAGGAGCAGGATGACTCACCCCCTGAATCCCCTGCTGGAACCGATGAGAATGAAGGCCAAGATCAAGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACATCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTTGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTTGATATGAATCTTTTACGAGATCTGGATTTCAGAAATTCAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341504" ref_strand="+" ref_description="SGN-E341504 [cTOE-23-J24]">
      <seq>ttatctttggtgagagatcagtatcacagaatttggctcgccagcgaattctatgaagcgatctaaggatccttttgaggctacttttgaggagcaggatgactcaccccctgaatcccctgctggaaccgatgagaatgaaggccaagatcaaggtgcagttggtgttaatatgaatgaaggtgacgatgttaataccgattctcgtgaaaaaccttcaacatctaaagctacatcagtctctgttagtactgctggtccaattagcaaacccaaagaggaagatgaggaggaagaggaagaaagcatggatgtgcagttaggaaaactctcatcaagtagtgatcctgacaaactggcgaagatgcagtccatcttatcccaatttacagaggagcagatgagtagatatgaatcttttaggagatctggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80659" stop="81693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80958" g_stop="81393" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E341504" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80958" e_stop="81393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGTCGGGAGAGAGATCAGAATCACAGAATTTTGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATT</genome_strand>
        <mrna_strand>TTATCTTTG-GTGAGAGATCAGTATCACAGAATTTGGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGACTCACCCCCTGAATCCCCTGCTGGAACCGATGAGAATGAAGGCCAAGATCAAGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACATCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547529" ref_strand="+" ref_description="SGN-E547529 [TUS-71-H8]">
      <seq>cagaccggccgccggcacgctcgtcggaatcatctttggtgagagatcagtatcacagaattttgctcgccagcaaattctatgaagcgatctaaggatccttttgaggctacttttgaggagcaggatgactcaccccctgaatcccctgctggcaccgatgagaatgaaggccaagatcaaggtgcagttggtgttaatatgaatgaaggtgacgatgttaataccgattctcgtgaaaaaccttcaacatctaaagctacatcagtctctgttagtactgctggtccaattagcaaacccaaagaggaagatgaggaggaagaggaagaaagcatggatgtgcagttaggaaaactctcatcaagtagtgatcctgacaaactggcgaagatgcagtccatcttatcccaatttacagaggagcagatgagtagatatgaatcttttaggagatctggatttcagaaatccaacatgaagcggttgctgaccaacatcacaggaagtgcaaagatatctattcctatgacaattgtggtgtctgggatagcaaaaatgtttgtcggtgagcttattgaacagctaaaatggtgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80641" stop="81831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80971" g_stop="81531" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="601" r_length="560" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E547529" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80971" e_stop="81531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGAATCACAGAATTTTGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGC</genome_strand>
        <mrna_strand>AGAGATCAGTATCACAGAATTTTGCTCGCCAGCAAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGACTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCAAGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACATCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTG-AACAGCTAAAATGGTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360082" ref_strand="+" ref_description="SGN-E360082 [cLPP-14-I13]">
      <seq>ctatgaagcgatctatggatccttttgaggctacttttgaggagcaggatgactcaccccctgaatcccctgctggcaccgatgagaatgaaggccatgatcaaggtgcagttggtgttaatatgaatgaaggcgacgatgttaataccgatcctcgtgaataaccttcaacatcttaagctacatcagtctctgttagtactgctggtccaattagcaaacccaaagaggaagatgacgaggaagatgaagaaagcatggatgtgcagtttggaaaactctcatcaagtagtgatcctgacaaactggcgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80709" stop="81625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81009" g_stop="81325" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E360082" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81009" e_stop="81325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATG</genome_strand>
        <mrna_strand>CTATGAAGCGATCTATGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGACTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCATGATCAAGGTGCAGTTGGTGTTAATATGAATGAAGGCGACGATGTTAATACCGATCCTCGTGAATAACCTTCAACATCTTAAGCTACATCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGACGAGGAAGATGAAGAAAGCATGGATGTGCAGTTTGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547528" ref_strand="+" ref_description="SGN-E547528 [TUS-71-H8](-)">
      <seq>ggatgtgcagttaggaaaactctcatcaagtagtgatcctgacaaactggcgaagatgcagtccatcttatcccaatttacagaggagcagatgagtagatatgaatctcttaggagatctggatttcagaaatccaacatgaagcggttgctgaccaacatcacaggaagtgcaaagatatctattcctatgacaattgtggtgtctgggatagcaaaaatgtttgtcggtgagcttattgaaacagctaaaatggtgatggcagagagaaaagatacaggcccaatcaggccatgccacataagagaagcatatagaaggttaaaacttgaaggcaagattccaaaaaaatcagtgccaaggcttttccgatagtgaacgtggaagcaacctgtagttatatttcagatttgtagcagtcagccactttcctcgcagaaagacgtagggatgaacttgtaaatcttggacgaaaagattggatgaggtgtacttttacaaggtgaggctttagcttctctttgagatgttggggttccatcaaagaagtaaatttcgagaggcatccgccatggtgggaagagagctctcaccttgacgaaaggattggcaggacgaagatccagaacaattgtttcttagctgtgtagtttttggtgttggtacattgagtttcagctgttgctaccatttttccctttttctagaagggcatacttaggatacatgaaattatgaaaatagtagaaaatgttggaaaaaacagatcgagttaagtggcattccaagtttatgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="80968" stop="82357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81268" g_stop="82057" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="811"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E547528" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81268" e_stop="82057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGCAGAGAGAAAAGATACAGGCCCAATCAGGCCATGCCACATAAGAGAAGCATATAGAAGGTTAAAACTTGAAGGCAAGATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGTAGTGAACGTGGAAGCAACCTGTAGTTATATTTCAGATTTGTAGTAGTCAGCCACTTTCCTCGCAGAAAGGCGTAAGGATGAACTTGTAAATCTTGGACGAAAAGATT-CATGAGGTGTACCTTTACAAGGTGAGGCTTTAGCTTCTCTTTGAAATGTTGGGGTTCCATTAAAGAAGTAAATTTCGAGGGGCATCAGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCTGAACAAATTGTTTCTTAACTGTGTAGTTTTTGGTGTTGGTACATTGAGTTTCAGCTGTTGCCATCATTTTTCCCTTTTTCCAGAAGGGCATACTTAGGATACATGAAATTATGAAAATAGTAGAAAATGTTTGGAAAAAACAGATCGAGTTAAGTGGCATTCCAA</genome_strand>
        <mrna_strand>GGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTCTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGCAGAGAGAAAAGATACAGGCCCAATCAGGCCATGCCACATAAGAGAAGCATATAGAAGGTTAAAACTTGAAGGCAAGATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGATAGTGAACGTGGAAGCAACCTGTAGTTATATTTCAGATTTGTAGCAGTCAGCCACTTTCCTCGCAGAAAGACGTAGGGATGAACTTGTAAATCTTGGACGAAAAGATTGGATGAGGTGTACTTTTACAAGGTGAGGCTTTAGCTTCTCTTTGAGATGTTGGGGTTCCATCAAAGAAGTAAATTTCGAGAGGCATCCGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCAGAAC-AATTGTTTCTTAGCTGTGTAGTTTTTGGTGTTGGTACATTGAGTTTCAGCTGTTGCTACCATTTTTCCCTTTTTCTAGAAGGGCATACTTAGGATACATGAAATTATGAAAATAGTAGAAAATG-TTGGAAAAAACAGATCGAGTTAAGTGGCATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255823" ref_strand="-" ref_description="SGN-E255823 [cLEG-35-M23]">
      <seq>gattccaaaaaaatcagtgccaaggcttttccggtagtgaacgtggaagcaacctgtagttatatttcagatttgtagtagtcagccactttcctcgcagaaaggcgtaaggatgaacttgtaaatcttggacgaaaagattcatgaggtgtacctttacaaggtgaggctttagcttctctttgaaatgttggggttccattaaagaagtaaatttcgaggggcatcagccatggtgggaagagagctctcaccttgacgaaaggattggcaggacgaagatcctgaacaaattgtttcttaactgtgtagtttttggtgttggtacattgagtttcagctgttgccatcatttttccctttttccagaagggcatacttaggatacatgaaattatgaaaatagtagaaaatgtttggaaaaaacagatcgagttaagtggcattccaagtttattgtcaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81307" stop="82357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81607" g_stop="82057" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="483"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E255823" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255823" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81607" e_stop="82057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGTAGTGAACGTGGAAGCAACCTGTAGTTATATTTCAGATTTGTAGTAGTCAGCCACTTTCCTCGCAGAAAGGCGTAAGGATGAACTTGTAAATCTTGGACGAAAAGATTCATGAGGTGTACCTTTACAAGGTGAGGCTTTAGCTTCTCTTTGAAATGTTGGGGTTCCATTAAAGAAGTAAATTTCGAGGGGCATCAGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCTGAACAAATTGTTTCTTAACTGTGTAGTTTTTGGTGTTGGTACATTGAGTTTCAGCTGTTGCCATCATTTTTCCCTTTTTCCAGAAGGGCATACTTAGGATACATGAAATTATGAAAATAGTAGAAAATGTTTGGAAAAAACAGATCGAGTTAAGTGGCATTCCAA</genome_strand>
        <mrna_strand>GATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGTAGTGAACGTGGAAGCAACCTGTAGTTATATTTCAGATTTGTAGTAGTCAGCCACTTTCCTCGCAGAAAGGCGTAAGGATGAACTTGTAAATCTTGGACGAAAAGATTCATGAGGTGTACCTTTACAAGGTGAGGCTTTAGCTTCTCTTTGAAATGTTGGGGTTCCATTAAAGAAGTAAATTTCGAGGGGCATCAGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCTGAACAAATTGTTTCTTAACTGTGTAGTTTTTGGTGTTGGTACATTGAGTTTCAGCTGTTGCCATCATTTTTCCCTTTTTCCAGAAGGGCATACTTAGGATACATGAAATTATGAAAATAGTAGAAAATGTTTGGAAAAAACAGATCGAGTTAAGTGGCATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="82975" stop="84455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83275" g_stop="83825" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83826" i_stop="83933" i_length="108">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83934" g_stop="84152" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="770" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83275" e_stop="83825"/>
          <exon e_start="83934" e_stop="84152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTATTGATAACACAACGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAGGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTTCAAAAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTTGTGATACATTATGAATTATTACTGTATCTAACAGTTAAATTATCTTATGTGTTTGTGATACATTTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTATAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG............................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="84245" stop="85745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84537" g_stop="84817" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84818" i_stop="85020" i_length="203">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85021" g_stop="85143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85144" i_stop="85226" i_length="83">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85227" g_stop="85445" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84537" e_stop="84817"/>
          <exon e_start="85021" e_stop="85143"/>
          <exon e_start="85227" e_stop="85445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGTGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCAGTGATCCAAAGGTAATGTTTATGATACATTGGGTATGTTGTGTATCATGCATATATAGTCAATGCTTTGTATCATGATCATTTTTTTTTCTCATTTTATATTCTGTCATGTATCATACATATTTAATCAATACTATATATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAATGGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCTAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGTAGTTACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG...........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="88748" stop="87630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88448" g_stop="87930" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88448" e_stop="87930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACCGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATATCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTTAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="98188" stop="99023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98488" g_stop="98723" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98488" e_stop="98723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCAATGATACCTACTCATTACCCGT-GTTTGTACTGACCCCCTACTTTTATGTGT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="100148" stop="99116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99848" g_stop="99416" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99848" e_stop="99416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCGTTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGATGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTTCTCAGTCGGTGGAGGAGTCACTGCACTAGTATCAGATGGGATAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="99183" stop="100336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99483" g_stop="100036" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99483" e_stop="100036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATCCCATCTGATACTAGTGCAGTGACTCCTCCACCGACTGAGAAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCATCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAACGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="100506" stop="99187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100206" g_stop="99487" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100206" e_stop="99487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGACATACCGGGATAATGCACGAAACTTAGCCGCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCTCTCTTCCTATCCCTCAAAGTCCGGGAAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCGTTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGATGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTTCTCAGTCGGTGGAGGAGTCACTGCACTAGTATCAGATGGGAT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="100503" stop="99240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100203" g_stop="99540" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100203" e_stop="99540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACACAGTTGGGTGACATACCGGGATAATGCACGAAACTTAGCCGCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCTCTCTTCCTATCCCTCAAAGTCCGGGAAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCGTTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGATGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="99810" stop="101818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100110" g_stop="100282" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100283" i_stop="101026" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101027" g_stop="101511" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="658" r_length="485" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100110" e_stop="100282"/>
          <exon e_start="101027" e_stop="101511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGCGGCTAAGTTTCGTGCATTATCCCGGTATGTCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATTAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCAAAATCTTTCCAAGAAGTGGTAGACTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAACGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTATCTGAGAGACCTATGCTTGAACCCAGAGAGTGTTATGGATGTGGGGAGATCGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGTGGTGGTCGAAGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGCGGTTAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGATTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATTGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTATAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACGCTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATTTCAAGGATGAAACTACCCACGTACCTTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101227" stop="100069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100927" g_stop="100369" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100927" e_stop="100369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTAACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGTTTTGGTGACCACCATTACTTCGACCACCACGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGATAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCGTTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101837" stop="100476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101537" g_stop="100776" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101537" e_stop="100776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAAGGTACGTGGGTAGTTTCATCCTTGAAATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGCGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCAATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101434" stop="100508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101134" g_stop="100804" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101134" e_stop="100804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCAATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101837" stop="100577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101537" g_stop="100877" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101537" e_stop="100877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAAGGTACGTGGGTAGTTTCATCCTTGAAATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGCGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCAATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101906" stop="100648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101606" g_stop="100948" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101606" e_stop="100948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAAGGTACGTGGGTAGTTTCATCCTTGAAATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGCGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCAATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102355" stop="101077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102055" g_stop="101376" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102055" e_stop="101376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTACTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTGGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102426" stop="101114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102126" g_stop="101414" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102126" e_stop="101414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTACTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTGGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGC-TCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102426" stop="101231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102126" g_stop="101531" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102126" e_stop="101531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTACTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTGGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102426" stop="101301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102126" g_stop="101601" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102126" e_stop="101601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTACTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTGGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102355" stop="101397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102055" g_stop="101697" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102055" e_stop="101697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="104775" stop="106047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105075" g_stop="105250" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105251" i_stop="105404" i_length="154">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105405" g_stop="105747" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="515" r_length="342" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105075" e_stop="105250"/>
          <exon e_start="105405" e_stop="105747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGAATTGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCATGTTCCGATACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGTCACGTTTCAACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGAATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAGCCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATAATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG..........................................................................................................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="+" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>tcgagtttttttttttttttttttttaaaaagaagcaaaatctttattcatatcaactgcaattacattgagtttgaaaaggccatcactaaggtagtcttttcctacatacatatcatttttgcttactactactttatcaaaaacaaatacacatttaaatccattcttggtcagaattggaattgaaactaaattatttctcaattctggaacatatgagaccatattcaaagtcactaccttgcctgatgtcatctttaataggactttgccagttccttccacctttgcaacagcggagtttgccataaataatttttcatctgtaagtgctagagtatatgatgaaaataattctttgttggcacaaacatggcatgaggcaccagaatctatccaccattctcttggatttccaaccaagttacattctgaaagcattgcacagagatcgtccatttctcctttggattcagccaagtttgcttgatccttctttttcttgtccttcttaggaccccggcattcattacccctatgaccatgtttaccacaattaaagcagtttccattgaatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="+" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15163" stop="125686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124259" g_stop="124288" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124289" i_stop="124830" i_length="542">
            <donor d_prob="0.723" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124831" g_stop="125386" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="585" r_length="556" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="+" ref_id="SGN-E395006" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124259" e_stop="124288"/>
          <exon e_start="124831" e_stop="125386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTCTGTGGTAAACTTGAACTTATAAGTAATGCATTCACATTTCTTTTAAAGTTCGATTTTTCCTTTCTGCAATTCCATTAGACTGAGGAGTGTAGGAAGAAGTAGTTTAATGGATTATTCCATTTTCTAAACATATTTATGCAAATGGAGATTCATATTATCCACCTCTATCACTTCTGATCATTTTGATCTTTTTATCTAACTGATTTTCAACTTTAGTTTTATATTACCTAAATGCATCTATTGCTTCATCCTTACCATTTAGCAAATAAACATAACAATATCTAGTGCAATCGTCAATAAAAGTTATAAAATACTTTTTCCCACCACGTGATGGTGTTGACTTCATGTCACAAATATCGGTGTGAATCAATTCTAAAGGATTTGAATTCCTTTCAACAGATTTATAAGGATGCTTAGCATACTTAGATTCAACGCAAATTTGACATTTTAATTTATTGCACTCGAATTTTGGCAAAATATTTAAGTTAATTAGTTTTCGCAAGGTTTTGTTATTAACGTGTACCAAAAGTTCATGCCATAAACATTTAGACTCAAGCAAATAAGAAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGTCATCACTAAGGTAGCCTTTTCCTACATACATATCATTCTTGCTTATTACTACTTTATCATAAACAAATACACATTTGAATCCATTCTTGGTAAGTACTGAAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCTTATTCAAAGTCACCACCTTGCCTAATGTCATTTTTAATAGGACTATGCCAGTTCCTTCCACCCTTGCAACAACGGAGTTTGCCATAAACAACTTCTCAACTGTAGGTGCTGGAGTATATGATGAAAATAATTCTTTATTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTAAAAGCATTGCACAGAGATCGTCTATTTCTCCTTTGGATTCAGCCAAGTTAGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACTCCGAAATTCAGTAGCCCTATGACCATGTTTACCACAGTTGAAGCAGTTTTCATTGAATTTATT</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTTTTTTA-AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAAAAACAAATACACATTTAAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTATTTCTCAATTCTGGAACATATGAGACCATATTCAAAGTCACTACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAATAATTTTTCATCTGTAAGTGCTAGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACCCCGGCATTCATTACCCCTATGACCATGTTTACCACAATTAAAGCAGTTTCCATTGAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="125630" stop="15163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125330" g_stop="124828" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124827" i_stop="124330" i_length="498">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.293" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124329" g_stop="124309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="524" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125330" e_stop="124828"/>
          <exon e_start="124329" e_stop="124309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCTAACTTGGCTGAATCCAAAGGAGAAATAGACGATCTCTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAATAAAGAATTATTTTCATCATATACTCCAGCACCTACAGTTGAGAAGTTGTTTATGGCAAACTCCGTTGTTGCAAGGGTGGAAGGAACTGGCATAGTCCTATTAAAAATGACATTAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTTCAGTACTTACCAAGAATGGATTCAAATGTGTATTTGTTTATGATAAAGTAGTAATAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTATTTGCTTGAGTCTAAATGTTTATGGCATGAACTTTTGGTACACGTTAATAACAAAACCTTGCGAAAACTAATTAACTTAAATATTTTGCCAAAATTCGAGTGCAATAAATTAAAATGTCAAATTTGCGTTGAATCTAAGTATGCTAAGCATCCTTATAAATCTGTTGAAAGGAATTCAAATCCTTTAGAATTGATTCACACCGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTTATAACTTTTATTGACGATTGCACTAGATATTGTTATGTTTATTTGCTAAATGGTAAGGATGAAGCAATAGATGCATTTAGGTAATATAAAACTAAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGATAATATGAATCTCCATTTGCATAAATATGTTTAGAAAATGGAATAATCCATTAAACTACTTCTTCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGGAAAAATCGAACTTTAA</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="125836" stop="124527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125536" g_stop="124828" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="718"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125536" e_stop="124828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCATGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATGCCACAAAAAATTAAAGAAAAGAAACAAAGCATAT-GTCCAAAAAGCAATCCTCCTAAGAATAAATTCAATGAAAACTGCTTCAACTGTGGTAAACATGGTCATAGGGCTACTGAATTTCGGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCTAACTTGGCTGAATCCAAAGGAGAAATAGACGATCTCTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAATAAAGAATTATTTTCATCATATACTCCAGCACCTACAGTTGAGAAGTTGTTTATGGCAAACTCCGTTGTTGCAAGGGTGGAAGGAACTGGCATAGTCCTATTAAAAATGACATTAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTTCAGTACTTACCAAGAATGGATTCAAATGTGTATTTGTTTATGATAAAGTAGTAATAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCAC--AAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="125662" stop="124527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125362" g_stop="124828" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="556"/>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125362" e_stop="124828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGGTAAACATGGTCATAGGGCTACTGAATTTCGGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCTAACTTGGCTGAATCCAAAGGAGAAATAGACGATCTCTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAATAAAGAATTATTTTCATCATATACTCCAGCACCTACAGTTGAGAAGTTGTTTATGGCAAACTCCGTTGTTGCAAGGGTGGAAGGAACTGGCATAGTCCTATTAAAAATGACATTAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTTCAGTACTTACCAAGAATGGATTCAAATGTGTATTTGTTTATGATAAAGTAGTAATAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="126514" stop="125248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126215" g_stop="125732" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="496" r_length="486" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125731" i_stop="125660" i_length="72">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.936" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125659" g_stop="125548" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126215" e_stop="125732"/>
          <exon e_start="125659" e_stop="125548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTGCTGCAACAGTAAGTGTTGCAACAACATCGGTTGCACGTAATCGTTCAAATGCTGCCTTAGCACCGGCTTAGAAACCTGCAAAGTTTTCTTGAGTCGACTTTAAGAAATGACAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGATCCTGTTATGTCAGATGAGACTCCGTCAAATGAACGATTCTTGGTAACAGAAGCATGGACAGACTCAGATTTTTTGTGT-AAAATTATATTCTGAGTGGCCTGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCT-GGATGCTTTAGAAAAGAAGTACAAAACAGAAGACGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTAGAAGATGATAGACAGTAAGACCATCGTCACCCAAGTTCAAGAACTACAGGTCATAATCCATGATTTCTTTGCTGAAGGTATATATTTATTTAATGCCTATGTTAGGAATATTAAGTTTTTCCTTAATACTCACATAATCTTTAATGTAGGATTGATTGTGAATGATGTCTTTCAAGTGGCAACAATTATTGAAAAGTTACCTCCATTATGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>CAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0101E05-5IiCm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0101E05.1" temp_strand="-" temp_description="C05SLm0101E05.1  AC236949.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0101E05 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="126727" stop="125263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126427" g_stop="125732" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125731" i_stop="125660" i_length="72">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.936" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125659" g_stop="125563" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0101E05.1" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0101E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126427" e_stop="125732"/>
          <exon e_start="125659" e_stop="125563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAATTTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCACATACTTAAGTTATCTTCCATTTGTGACAGAAATAAAAATAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAGTAAGTGTTGCAACAACATCGGTTGCACGTAATCGTTCAAATGCTGCCTTAGCACCGGCTTAGAAACCTGCAAAGTTTTCTTGAGTCGACTTTAAGAAATGACAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGATCCTGTTATGTCAGATGAGACTCCGTCAAATGAACGATTCTTGGTAACAGAAGCATGGACAGACTCAGATTTTTTGTGT-AAAATTATATTCTGAGTGGCCTGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCT-GGATGCTTTAGAAAAGAAGTACAAAACAGAAGACGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTAGAAGATGATAGACAGTAAGACCATCGTCACCCAAGTTCAAGAACTACAGGTCATAATCCATGATTTCTTTGCTGAAGGTATATATTTATTTAATGCCTATGTTAGGAATATTAAGTTTTTCCTTAATACTCACATAATCTTTAATGTAGGATTGATTGTGAATGATGTCTTTCAAGTGGCAACAATTATTGAAAAGTTACCTCC-ATTATGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAA-ATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG------AAA-AAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTG---C---AA------CAAC-A-AT-GGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>52</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3690" PGL_stop="4065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3690" e_stop="4065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="3690" e_stop="4065" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3690" stop="4065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTCAAGACATAGACGTAGTTTATTTGGTTCGATATGAGTTAGACAAGGGATCACTCCTTTGAATAAAAGATCGGAATTTAGGGCTCTTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTTTGTCATTTGGATCCGCATGGTGGTCTAGTAGGACTACCACCATGTCGGGGAACAGCATTTCGGATGCAATGTGGAGGGGGGTTTGCCAGCTGGACCAACCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCAGCTACAATTTTCAACCGCGTAGTGTAACGTGATCGATTCATCGAGATAGTCCTTCTCCCTGACCATAAGTTTGACTAATTCCACGTCGGATGAGTCTA</gDNA_template>
            <first_frame> *  L  K  T  *  T  *  F  I  W  F  D  M  S  *  T  R  D  H  S  F  E  *  K  I  G  I  *  G  S  *  N  V  E  W  S  D  P  I  H  R  F  V  I  W  I  R  M  V  V  *  *  D  Y  H  H  V  G  E  Q  H  F  G  C  N  V  E  G  G  L  P  A  G  P  T  G  W  F  T  L  A  A  P  S  S  S  N  A  F  T  T  S  Q  L  Q  F  S  T  A  *  C  N  V  I  D  S  S  R  *  S  F  S  L  T  I  S  L  T  N  S  T  S  D  E  S  </first_frame>
            <second_frame>  N  S  R  H  R  R  S  L  F  G  S  I  *  V  R  Q  G  I  T  P  L  N  K  R  S  E  F  R  A  L  R  M  S  S  G  V  I  P  S  I  V  L  S  F  G  S  A  W  W  S  S  R  T  T  T  M  S  G  N  S  I  S  D  A  M  W  R  G  V  C  Q  L  D  Q  P  G  G  S  R  W  L  H  R  A  R  V  T  L  S  Q  P  P  S  Y  N  F  Q  P  R  S  V  T  *  S  I  H  R  D  S  P  S  P  *  P  *  V  *  L  I  P  R  R  M  S  L </second_frame>
            <third_frame>   T  Q  D  I  D  V  V  Y  L  V  R  Y  E  L  D  K  G  S  L  L  *  I  K  D  R  N  L  G  L  L  E  C  R  V  E  *  S  H  P  S  F  C  H  L  D  P  H  G  G  L  V  G  L  P  P  C  R  G  T  A  F  R  M  Q  C  G  G  G  F  A  S  W  T  N  R  V  V  H  V  G  C  T  E  L  E  *  R  F  H  N  L  P  A  T  I  F  N  R  V  V  *  R  D  R  F  I  E  I  V  L  L  P  D  H  K  F  D  *  F  H  V  G  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3730" stop="3999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRQGITPLNKRSEFRALRMSSGVIPSIVLSFGSAWWSSRTTTMSGNSISDAMWRGVCQLDQPGGSRWLHRARVTLSQPPSYNFQPRSVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20039" PGL_stop="19313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20039" e_stop="19313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="20039" e_stop="19313" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20039" stop="19554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19613" stop="19313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACTACCCCATACCTACAACATCTCCAGCCCGATCCGTTTGGGGTCCTTCCCGGCCACCCTCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGTCGGTATCTTTAAACTCAAAACTTTTCAGGCTACCATACTACAAAATATACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGAGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAGACTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTTCAATTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGCCTATGTTAATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGTCTCAAGCAAGCCCCCCGTGCTTGGTACACATGTCTGAAAACATT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  Y  P  I  P  T  T  S  P  A  R  S  V  W  G  P  S  R  P  P  S  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  S  V  S  L  N  S  K  L  F  R  L  P  Y  Y  K  I  Y  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  E  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  S  T  R  L  V  W  L  L  K  T  T  I  R  S  M  G  L  I  T  P  R  H  S  V  Q  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  P  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  V  S  S  K  P  P  V  L  G  T  H  V  *  K  H  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  L  Q  H  L  Q  P  D  P  F  G  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  F  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  S  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  F  N  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  S  Q  A  S  P  P  C  L  V  H  M  S  E  N  I </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  L  P  H  T  Y  N  I  S  S  P  I  R  L  G  S  F  P  A  T  L  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  V  G  I  F  K  L  K  T  F  Q  A  T  I  L  Q  N  I  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  *  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  K  Y  K  A  R  L  V  A  K  D  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  S  I  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  A  Y  V  N  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  C  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19713" stop="19315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVPKPHGRHPVGCKWVYKIKHNADGSISKYKARLVAKDYNQEYGLDYSETFSSIIRQETIRLVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPAYVNPRFPQHVCKLQKSLYGLKQAPRAWYTCLKT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20037" stop="19714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPELPHTYNISSPIRLGSFPATLESPPPVPPPNTHPMLTRGKVGIFKLKTFQATILQNIPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24978" PGL_stop="24551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24978" e_stop="24551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="24978" e_stop="24551" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24978" stop="24551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGACAAATATTCCCAAATATTGAGCAGATTGATTCTGAAGTGTACGCGTAAGTGCTTGGATGTGGATCTTATGCATGGTTGATGCTGATCCCCAAGAATAATGCGCTTTTGTTAGTTAAATATTGTTTACGGTGAGGTCCAGCTGATGAGATGCTGTGAAACCTCCCATCATTTTAGGATGCCGAAGTCCTGAAAAGATGAAATTACAGGTAAATTATAGAGCATGCAATGACATTTGCTGGGTTTTTTTTTTTTGCCGTCTCTGAAGACGTTTATTTTGTTCGTCCTCGGACTACAAAGGAGTAACAATATTGTACTTATATATGTCCTCCAAATTAGAAATGTCGCCTTTTGGTGTTGTGTTGTGAACTGAAGGGAAAATGTAAGGGGAAAAATGTTTAATTGGTATTTTATTGTCAATTCA</gDNA_template>
            <first_frame> F  E  T  N  I  P  K  Y  *  A  D  *  F  *  S  V  R  V  S  A  W  M  W  I  L  C  M  V  D  A  D  P  Q  E  *  C  A  F  V  S  *  I  L  F  T  V  R  S  S  *  *  D  A  V  K  P  P  I  I  L  G  C  R  S  P  E  K  M  K  L  Q  V  N  Y  R  A  C  N  D  I  C  W  V  F  F  F  C  R  L  *  R  R  L  F  C  S  S  S  D  Y  K  G  V  T  I  L  Y  L  Y  M  S  S  K  L  E  M  S  P  F  G  V  V  L  *  T  E  G  K  M  *  G  E  K  C  L  I  G  I  L  L  S  I   </first_frame>
            <second_frame>  L  R  Q  I  F  P  N  I  E  Q  I  D  S  E  V  Y  A  *  V  L  G  C  G  S  Y  A  W  L  M  L  I  P  K  N  N  A  L  L  L  V  K  Y  C  L  R  *  G  P  A  D  E  M  L  *  N  L  P  S  F  *  D  A  E  V  L  K  R  *  N  Y  R  *  I  I  E  H  A  M  T  F  A  G  F  F  F  F  A  V  S  E  D  V  Y  F  V  R  P  R  T  T  K  E  *  Q  Y  C  T  Y  I  C  P  P  N  *  K  C  R  L  L  V  L  C  C  E  L  K  G  K  C  K  G  K  N  V  *  L  V  F  Y  C  Q  F  </second_frame>
            <third_frame>   *  D  K  Y  S  Q  I  L  S  R  L  I  L  K  C  T  R  K  C  L  D  V  D  L  M  H  G  *  C  *  S  P  R  I  M  R  F  C  *  L  N  I  V  Y  G  E  V  Q  L  M  R  C  C  E  T  S  H  H  F  R  M  P  K  S  *  K  D  E  I  T  G  K  L  *  S  M  Q  *  H  L  L  G  F  F  F  L  P  S  L  K  T  F  I  L  F  V  L  G  L  Q  R  S  N  N  I  V  L  I  Y  V  L  Q  I  R  N  V  A  F  W  C  C  V  V  N  *  R  E  N  V  R  G  K  M  F  N  W  Y  F  I  V  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0101E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38351" PGL_stop="30731"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38351" e_stop="38057"/>
            <exon e_start="31610" e_stop="31380"/>
            <exon e_start="31220" e_stop="31074"/>
            <exon e_start="30989" e_stop="30847"/>
            <exon e_start="30750" e_stop="30731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="0.993"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.492" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.155" acc_prob="0.995" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="38351" e_stop="38057" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="38056" i_stop="31611" i_length="6446"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31610" e_stop="31380" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31379" i_stop="31221" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="31220" e_stop="31074" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.492" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31073" i_stop="30990" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="30989" e_stop="30847" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.155" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30846" i_stop="30751" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30750" e_stop="30731" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38351" stop="38057"/>
              <exon start="31610" stop="31380"/>
              <exon start="31220" stop="31074"/>
              <exon start="30989" stop="30847"/>
              <exon start="30750" stop="30731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAACTCCATTCATGGAAAATCAAAGTGAAAACTCCGATGGAAAACCTAGTTCCGATCCAACGTCGGAATCAGCAACACTCCTTGATCTTACGAGTTACCAGCTTCGCGATCTGGAGTCAGTGGAGCTTCCTCCGAGTCTTACAGAGTTAGACTTGACAACCAATCGTTTGTCCGCTTTAGACCCCCGTATCGGCCAACTTCCTAACCTCAAAAAGCTCTCTCTTCGTCAGAACCTCATAACTGATGCCTCTGTTGTGCCTCTTTCCTCTTGGCAACTCATTTCTGACCTCGAG : GAGCTAGTGCTTAGGGACAATCAGCTGAAGAAAATTCCCAATGTTGTGATATTCAAGAAGCTTCTGGTATTTGATGTCTCTTTCAATGAGATATCATCACTAAGTGGATTGTCCAAGGTCTCCAGTACACTCAGAGAACTATATGTGTCTAAAAATGAAGTCACCAAGATGGAGGAGATTGAGCACTTCCACGAGCTGCAAATACTCGAACTTGGGTCCAATAGATTACGG : GTTATGGAGCTTCTGGAGAACTTGAAAAATCTACAAGAACTTTGGCTTGGACGCAATCGTATTCGGACAGTTAATTTGTGCGGTCTGAAATGCATTAAAAAGATTAGCCTGCAGAGCAACCGTCTAACTTCCATGATGGGGTTTCAG : GAATGTGTTGCCCTTGAAGAATTATACTTGAGCCATAATGGTATTGTGAAAATGGAAGGTTTGTCTACCTTGGTAAACCTGCGGGTCTTGGATGTATCAGCAAATAAGCTTACAGAAATTAATGACATCGAGAACTTGACTAA : ACTAGAAGATTTGTGGCTTA</gDNA_template>
            <first_frame> A  N  S  I  H  G  K  S  K  *  K  L  R  W  K  T  *  F  R  S  N  V  G  I  S  N  T  P  *  S  Y  E  L  P  A  S  R  S  G  V  S  G  A  S  S  E  S  Y  R  V  R  L  D  N  Q  S  F  V  R  F  R  P  P  Y  R  P  T  S  *  P  Q  K  A  L  S  S  S  E  P  H  N  *  C  L  C  C  A  S  F  L  L  A  T  H  F  *  P  R   : G  A  S  A  *  G  Q  S  A  E  E  N  S  Q  C  C  D  I  Q  E  A  S  G  I  *  C  L  F  Q  *  D  I  I  T  K  W  I  V  Q  G  L  Q  Y  T  Q  R  T  I  C  V  *  K  *  S  H  Q  D  G  G  D  *  A  L  P  R  A  A  N  T  R  T  W  V  Q  *  I  T   : G  Y  G  A  S  G  E  L  E  K  S  T  R  T  L  A  W  T  Q  S  Y  S  D  S  *  F  V  R  S  E  M  H  *  K  D  *  P  A  E  Q  P  S  N  F  H  D  G  V  S   : G  M  C  C  P  *  R  I  I  L  E  P  *  W  Y  C  E  N  G  R  F  V  Y  L  G  K  P  A  G  L  G  C  I  S  K  *  A  Y  R  N  *  *  H  R  E  L  D  *  :  T  R  R  F  V  A   </first_frame>
            <second_frame>  L  T  P  F  M  E  N  Q  S  E  N  S  D  G  K  P  S  S  D  P  T  S  E  S  A  T  L  L  D  L  T  S  Y  Q  L  R  D  L  E  S  V  E  L  P  P  S  L  T  E  L  D  L  T  T  N  R  L  S  A  L  D  P  R  I  G  Q  L  P  N  L  K  K  L  S  L  R  Q  N  L  I  T  D  A  S  V  V  P  L  S  S  W  Q  L  I  S  D  L  E  :  E  L  V  L  R  D  N  Q  L  K  K  I  P  N  V  V  I  F  K  K  L  L  V  F  D  V  S  F  N  E  I  S  S  L  S  G  L  S  K  V  S  S  T  L  R  E  L  Y  V  S  K  N  E  V  T  K  M  E  E  I  E  H  F  H  E  L  Q  I  L  E  L  G  S  N  R  L  R  :  V  M  E  L  L  E  N  L  K  N  L  Q  E  L  W  L  G  R  N  R  I  R  T  V  N  L  C  G  L  K  C  I  K  K  I  S  L  Q  S  N  R  L  T  S  M  M  G  F  Q  :  E  C  V  A  L  E  E  L  Y  L  S  H  N  G  I  V  K  M  E  G  L  S  T  L  V  N  L  R  V  L  D  V  S  A  N  K  L  T  E  I  N  D  I  E  N  L  T  K :   L  E  D  L  W  L  </second_frame>
            <third_frame>   *  L  H  S  W  K  I  K  V  K  T  P  M  E  N  L  V  P  I  Q  R  R  N  Q  Q  H  S  L  I  L  R  V  T  S  F  A  I  W  S  Q  W  S  F  L  R  V  L  Q  S  *  T  *  Q  P  I  V  C  P  L  *  T  P  V  S  A  N  F  L  T  S  K  S  S  L  F  V  R  T  S  *  L  M  P  L  L  C  L  F  P  L  G  N  S  F  L  T  S  R :   S  *  C  L  G  T  I  S  *  R  K  F  P  M  L  *  Y  S  R  S  F  W  Y  L  M  S  L  S  M  R  Y  H  H  *  V  D  C  P  R  S  P  V  H  S  E  N  Y  M  C  L  K  M  K  S  P  R  W  R  R  L  S  T  S  T  S  C  K  Y  S  N  L  G  P  I  D  Y  G :   L  W  S  F  W  R  T  *  K  I  Y  K  N  F  G  L  D  A  I  V  F  G  Q  L  I  C  A  V  *  N  A  L  K  R  L  A  C  R  A  T  V  *  L  P  *  W  G  F  R :   N  V  L  P  L  K  N  Y  T  *  A  I  M  V  L  *  K  W  K  V  C  L  P  W  *  T  C  G  S  W  M  Y  Q  Q  I  S  L  Q  K  L  M  T  S  R  T  *  L   : N  *  K  I  C  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38350" stop="38057"/>
                    <exon start="31610" stop="31380"/>
                    <exon start="31220" stop="31074"/>
                    <exon start="30989" stop="30847"/>
                    <exon start="30750" stop="30732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPFMENQSENSDGKPSSDPTSESATLLDLTSYQLRDLESVELPPSLTELDLTTNRLSALDPRIGQLPNLKKLSLRQNLITDASVVPLSSWQLISDLEELVLRDNQLKKIPNVVIFKKLLVFDVSFNEISSLSGLSKVSSTLRELYVSKNEVTKMEEIEHFHELQILELGSNRLRVMELLENLKNLQELWLGRNRIRTVNLCGLKCIKKISLQSNRLTSMMGFQECVALEELYLSHNGIVKMEGLSTLVNLRVLDVSANKLTEINDIENLTKLEDLWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="73678" PGL_stop="67804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73626" e_stop="73581"/>
            <exon e_start="72000" e_stop="71890"/>
            <exon e_start="70992" e_stop="70797"/>
            <exon e_start="70191" e_stop="70093"/>
            <exon e_start="69982" e_stop="69931"/>
            <exon e_start="69780" e_stop="69659"/>
            <exon e_start="69577" e_stop="69477"/>
            <exon e_start="69395" e_stop="69337"/>
            <exon e_start="69073" e_stop="69017"/>
            <exon e_start="68807" e_stop="68762"/>
            <exon e_start="68463" e_stop="68384"/>
            <exon e_start="68153" e_stop="67804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.896" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.995"/>
          <exon-intron don_prob="0.739" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73626" e_stop="73581" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.896" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73580" i_stop="72001" i_length="1580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72000" e_stop="71890" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="70992" e_stop="70797" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70191" e_stop="70093" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.739" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69982" e_stop="69931" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69780" e_stop="69659" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69577" e_stop="69477" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="69395" e_stop="69337" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69073" e_stop="69017" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.901">
            <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68807" e_stop="68762" e_length="46"/>
          </exon>
          <intron i_serial="10" don_prob="0.917" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="68463" e_stop="68384" e_length="80"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="68153" e_stop="67804" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73626" stop="73581"/>
              <exon start="72000" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73618" stop="73581"/>
              <exon start="72000" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71998" stop="71890"/>
              <exon start="70992" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251452" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71992" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71978" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69963" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69040" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68784" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGA : GCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG : GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG : GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG : GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT : TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG : GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG : ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAG : TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG : ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT : ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAG : GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAAAGATG</gDNA_template>
            <first_frame> S  L  G  P  I  V  L  S  V  N  P  C  L  W  W   : S  R  K  E  H  E  E  *  W  N  *  F  C  Q  H  F  C  F  T  L  Y  R  S  L  Q  P  *  H  S  Y  L  C  F  S  P  Q  T   : G  L  L  R  F  R  I  F  L  C  C  Q  S  W  Y  *  P  G  V  Y  G  *  G  F  R  S  K  Q  K  A  L  *  S  S  F  G  R  E  D  E  A  S  *  K  *  K  T  S  G  L  Y  S  *  S  R  *  T  F  G  S  *  Q  S  N  K  W :   *  L  *  G  G  I  L  H  W  C  *  S  T  *  R  *  S  *  S  S  E  T  I  L  W  V  K  C  V  A  Y  C  R :   Y  P  A  W  M  E  G  N  Y  G  E  V  S  S  R  G  T  :  *  G  D  K  S  S  I  K  A  H  S  P  C  T  *  S  *  C  *  L  F  *  S  A  R  V  S  W  Q  T  N  C  Y  F  A  P  T  A  L  *  R :   Q  T  F  *  S  I  K  W  N  F  W  S  W  C  T  F  *  L  W  S  D  N  S  F  G  H  R  *  C  L  W  P  S   : D  M  Q  G  *  G  C  K  A  S  D  L  G  V  C  A  T  I  E  K  :  C  F  C  S  E  S  W  *  Y  A  *  A  L  E  Q  W  C  F  Q  :  I  N  T  A  S  G  P  C  K  W  S  R  K  I  F   : Y  C  I  F  Y  G  A  K  S  R  L  S  C  *  M  L  A  N  L  P  I  Q  S  Q  P  T  E  :  V  S  S  N  Q  M  R  D  V  L  A  P  T  L  Q  R  H  S  C  *  *  K  F  L  Q  M  R  F  L  V  T  G  K  I  Q  M  A  P  H  I  S  C  T  Y  Y  N  G  E  *  C  W  T  G  L  W  F  N  L  Y  L  Q  L  L  E  N  V  C  D  R  I  I  V  *  W  F  I  V  *  I  F  T  M  *  V  V  V  H  L  Y  N  F  A  Y  F  C  Y  P  L  I  H  F  L  V  F  S  F  R  R  M  S  L  S  Y  M  Q  R   </first_frame>
            <second_frame>  L  W  G  P  L  F  S  P  *  I  L  V  Y  G  G  :  A  G  R  N  M  K  N  D  G  I  D  S  A  N  I  S  A  L  H  C  I  D  L  S  S  P  D  I  H  T  S  V  S  L  L  K  Q  :  A  C  L  D  S  G  F  F  Y  V  V  N  H  G  I  S  Q  E  F  M  D  E  V  F  A  Q  S  K  K  L  F  D  L  P  L  E  E  K  M  K  L  L  R  N  E  K  H  R  G  Y  T  P  S  L  D  E  H  L  D  P  D  N  Q  I  N   : G  D  Y  K  E  G  Y  Y  I  G  V  E  V  P  E  D  D  P  E  A  Q  R  P  F  Y  G  S  N  V  W  P  T  A   : G  T  L  P  G  W  K  E  T  M  E  K  Y  H  Q  E  A  L :   E  V  T  K  A  V  S  R  L  I  A  L  A  L  D  L  D  V  D  F  F  D  R  P  E  F  L  G  R  P  I  A  T  L  R  L  L  H  Y  E   : G  K  L  S  D  P  S  N  G  I  F  G  A  G  A  H  S  D  Y  G  L  I  T  L  L  A  T  D  D  V  S  G  L  Q  :  I  C  K  D  K  D  A  K  P  Q  I  W  E  Y  V  P  P  L  K  S :   A  F  V  V  N  L  G  D  M  L  E  R  W  S  N  G  V  F  R :   S  T  L  H  R  V  L  A  N  G  Q  E  R  F  S  :  I  A  Y  F  M  E  P  S  H  D  C  L  V  E  C  L  P  T  C  Q  S  K  V  N  P  P  R :   Y  P  P  I  K  C  E  T  Y  L  L  Q  R  Y  K  D  T  H  A  D  R  N  S  Y  K  *  D  S  W  *  L  V  K  Y  K  W  R  R  T  F  L  A  H  I  I  M  A  N  N  V  G  L  A  C  G  L  I  C  I  C  S  Y  L  R  M  C  V  I  E  *  L  Y  N  G  L  *  F  E  Y  S  P  C  R  *  *  Y  I  Y  T  T  L  L  T  F  A  I  H  S  S  T  F  *  F  L  V  L  E  E  *  V  F  P  I  C  K  D  </second_frame>
            <third_frame>   F  G  A  H  C  S  L  R  E  S  L  F  M  V  E :   Q  E  G  T  *  R  M  M  E  L  I  L  P  T  F  L  L  Y  T  V  S  I  S  P  A  L  T  F  I  P  L  F  L  S  S  N  R :   L  A  *  I  Q  D  F  S  M  L  S  I  M  V  L  A  R  S  L  W  M  R  F  S  L  K  A  K  S  S  L  I  F  L  W  K  R  R  *  S  F  L  E  M  K  N  I  G  A  I  L  L  V  *  M  N  I  W  I  L  T  I  K  *  M  :  V  T  I  R  R  D  I  T  L  V  L  K  Y  L  K  M  I  L  K  L  R  D  H  F  M  G  Q  M  C  G  L  L  Q  :  V  P  C  L  D  G  R  K  L  W  R  S  I  I  K  R  H   : L  R  *  Q  K  Q  Y  Q  G  S  *  P  L  H  L  I  L  M  L  T  F  L  I  G  Q  S  F  L  A  D  Q  L  L  L  C  A  Y  C  I  M  K  :  A  N  F  L  I  H  Q  M  E  F  L  E  L  V  H  I  L  T  M  V  *  *  L  F  W  P  Q  M  M  S  L  A  F  R :   Y  A  R  I  R  M  Q  S  L  R  F  G  S  M  C  H  H  *  K   : V  L  L  *  *  I  L  V  I  C  L  S  A  G  A  M  V  F  S   : D  Q  H  C  I  G  S  L  Q  M  V  K  K  D  F  L :   L  H  I  L  W  S  Q  V  T  T  V  L  L  N  A  C  Q  P  A  N  P  K  S  T  H  R   : G  I  L  Q  S  N  A  R  R  T  C  S  N  V  T  K  T  L  M  L  I  E  I  L  T  N  E  I  L  G  N  W  *  N  T  N  G  A  A  H  F  L  H  I  L  *  W  R  I  M  L  D  W  L  V  V  *  S  V  S  A  V  T  *  E  C  V  *  *  N  N  C  I  M  V  Y  S  L  N  I  H  H  V  G  S  S  T  F  I  Q  L  C  L  L  L  L  S  T  H  P  L  F  S  F  *  F  *  K  N  E  S  F  L  Y  A  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73598" stop="73581"/>
                    <exon start="72000" stop="71890"/>
                    <exon start="70992" stop="70797"/>
                    <exon start="70191" stop="70093"/>
                    <exon start="69982" stop="69931"/>
                    <exon start="69780" stop="69659"/>
                    <exon start="69577" stop="69477"/>
                    <exon start="69395" stop="69337"/>
                    <exon start="69073" stop="69017"/>
                    <exon start="68807" stop="68762"/>
                    <exon start="68463" stop="68384"/>
                    <exon start="68153" stop="68075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVYGGAGRNMKNDGIDSANISALHCIDLSSPDIHTSVSLLKQACLDSGFFYVVNHGISQEFMDEVFAQSKKLFDLPLEEKMKLLRNEKHRGYTPSLDEHLDPDNQINGDYKEGYYIGVEVPEDDPEAQRPFYGSNVWPTAGTLPGWKETMEKYHQEALEVTKAVSRLIALALDLDVDFFDRPEFLGRPIATLRLLHYEGKLSDPSNGIFGAGAHSDYGLITLLATDDVSGLQICKDKDAKPQIWEYVPPLKSAFVVNLGDMLERWSNGVFRSTLHRVLANGQERFSIAYFMEPSHDCLVECLPTCQSKVNPPRYPPIKCETYLLQRYKDTHADRNSYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72040" e_stop="71890"/>
            <exon e_start="70992" e_stop="70797"/>
            <exon e_start="70191" e_stop="70093"/>
            <exon e_start="69982" e_stop="69931"/>
            <exon e_start="69780" e_stop="69659"/>
            <exon e_start="69577" e_stop="69477"/>
            <exon e_start="69395" e_stop="69337"/>
            <exon e_start="69073" e_stop="69017"/>
            <exon e_start="68807" e_stop="68762"/>
            <exon e_start="68463" e_stop="68384"/>
            <exon e_start="68153" e_stop="67804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.990"/>
          <exon-intron don_prob="0.739" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72040" e_stop="71890" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="70992" e_stop="70797" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70191" e_stop="70093" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.739" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69982" e_stop="69931" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69780" e_stop="69659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69577" e_stop="69477" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="69395" e_stop="69337" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69073" e_stop="69017" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.901">
            <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68807" e_stop="68762" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.917" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="68463" e_stop="68384" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="68153" e_stop="67804" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72040" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72040" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71998" stop="71890"/>
              <exon start="70992" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251452" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71992" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71978" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69963" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69040" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68784" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGAAGAAAACTAATTGTTGATTTCATGAATAATAAGGCAGGAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG : GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG : GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG : GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT : TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG : GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG : ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAG : TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG : ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT : ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAG : GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAAAGATG</gDNA_template>
            <first_frame> E  E  K  K  T  N  C  *  F  H  E  *  *  G  R  K  E  H  E  E  *  W  N  *  F  C  Q  H  F  C  F  T  L  Y  R  S  L  Q  P  *  H  S  Y  L  C  F  S  P  Q  T   : G  L  L  R  F  R  I  F  L  C  C  Q  S  W  Y  *  P  G  V  Y  G  *  G  F  R  S  K  Q  K  A  L  *  S  S  F  G  R  E  D  E  A  S  *  K  *  K  T  S  G  L  Y  S  *  S  R  *  T  F  G  S  *  Q  S  N  K  W :   *  L  *  G  G  I  L  H  W  C  *  S  T  *  R  *  S  *  S  S  E  T  I  L  W  V  K  C  V  A  Y  C  R :   Y  P  A  W  M  E  G  N  Y  G  E  V  S  S  R  G  T  :  *  G  D  K  S  S  I  K  A  H  S  P  C  T  *  S  *  C  *  L  F  *  S  A  R  V  S  W  Q  T  N  C  Y  F  A  P  T  A  L  *  R :   Q  T  F  *  S  I  K  W  N  F  W  S  W  C  T  F  *  L  W  S  D  N  S  F  G  H  R  *  C  L  W  P  S   : D  M  Q  G  *  G  C  K  A  S  D  L  G  V  C  A  T  I  E  K  :  C  F  C  S  E  S  W  *  Y  A  *  A  L  E  Q  W  C  F  Q  :  I  N  T  A  S  G  P  C  K  W  S  R  K  I  F   : Y  C  I  F  Y  G  A  K  S  R  L  S  C  *  M  L  A  N  L  P  I  Q  S  Q  P  T  E  :  V  S  S  N  Q  M  R  D  V  L  A  P  T  L  Q  R  H  S  C  *  *  K  F  L  Q  M  R  F  L  V  T  G  K  I  Q  M  A  P  H  I  S  C  T  Y  Y  N  G  E  *  C  W  T  G  L  W  F  N  L  Y  L  Q  L  L  E  N  V  C  D  R  I  I  V  *  W  F  I  V  *  I  F  T  M  *  V  V  V  H  L  Y  N  F  A  Y  F  C  Y  P  L  I  H  F  L  V  F  S  F  R  R  M  S  L  S  Y  M  Q  R   </first_frame>
            <second_frame>  K  R  R  K  L  I  V  D  F  M  N  N  K  A  G  R  N  M  K  N  D  G  I  D  S  A  N  I  S  A  L  H  C  I  D  L  S  S  P  D  I  H  T  S  V  S  L  L  K  Q  :  A  C  L  D  S  G  F  F  Y  V  V  N  H  G  I  S  Q  E  F  M  D  E  V  F  A  Q  S  K  K  L  F  D  L  P  L  E  E  K  M  K  L  L  R  N  E  K  H  R  G  Y  T  P  S  L  D  E  H  L  D  P  D  N  Q  I  N   : G  D  Y  K  E  G  Y  Y  I  G  V  E  V  P  E  D  D  P  E  A  Q  R  P  F  Y  G  S  N  V  W  P  T  A   : G  T  L  P  G  W  K  E  T  M  E  K  Y  H  Q  E  A  L :   E  V  T  K  A  V  S  R  L  I  A  L  A  L  D  L  D  V  D  F  F  D  R  P  E  F  L  G  R  P  I  A  T  L  R  L  L  H  Y  E   : G  K  L  S  D  P  S  N  G  I  F  G  A  G  A  H  S  D  Y  G  L  I  T  L  L  A  T  D  D  V  S  G  L  Q  :  I  C  K  D  K  D  A  K  P  Q  I  W  E  Y  V  P  P  L  K  S :   A  F  V  V  N  L  G  D  M  L  E  R  W  S  N  G  V  F  R :   S  T  L  H  R  V  L  A  N  G  Q  E  R  F  S  :  I  A  Y  F  M  E  P  S  H  D  C  L  V  E  C  L  P  T  C  Q  S  K  V  N  P  P  R :   Y  P  P  I  K  C  E  T  Y  L  L  Q  R  Y  K  D  T  H  A  D  R  N  S  Y  K  *  D  S  W  *  L  V  K  Y  K  W  R  R  T  F  L  A  H  I  I  M  A  N  N  V  G  L  A  C  G  L  I  C  I  C  S  Y  L  R  M  C  V  I  E  *  L  Y  N  G  L  *  F  E  Y  S  P  C  R  *  *  Y  I  Y  T  T  L  L  T  F  A  I  H  S  S  T  F  *  F  L  V  L  E  E  *  V  F  P  I  C  K  D  </second_frame>
            <third_frame>   R  E  E  N  *  L  L  I  S  *  I  I  R  Q  E  G  T  *  R  M  M  E  L  I  L  P  T  F  L  L  Y  T  V  S  I  S  P  A  L  T  F  I  P  L  F  L  S  S  N  R :   L  A  *  I  Q  D  F  S  M  L  S  I  M  V  L  A  R  S  L  W  M  R  F  S  L  K  A  K  S  S  L  I  F  L  W  K  R  R  *  S  F  L  E  M  K  N  I  G  A  I  L  L  V  *  M  N  I  W  I  L  T  I  K  *  M  :  V  T  I  R  R  D  I  T  L  V  L  K  Y  L  K  M  I  L  K  L  R  D  H  F  M  G  Q  M  C  G  L  L  Q  :  V  P  C  L  D  G  R  K  L  W  R  S  I  I  K  R  H   : L  R  *  Q  K  Q  Y  Q  G  S  *  P  L  H  L  I  L  M  L  T  F  L  I  G  Q  S  F  L  A  D  Q  L  L  L  C  A  Y  C  I  M  K  :  A  N  F  L  I  H  Q  M  E  F  L  E  L  V  H  I  L  T  M  V  *  *  L  F  W  P  Q  M  M  S  L  A  F  R :   Y  A  R  I  R  M  Q  S  L  R  F  G  S  M  C  H  H  *  K   : V  L  L  *  *  I  L  V  I  C  L  S  A  G  A  M  V  F  S   : D  Q  H  C  I  G  S  L  Q  M  V  K  K  D  F  L :   L  H  I  L  W  S  Q  V  T  T  V  L  L  N  A  C  Q  P  A  N  P  K  S  T  H  R   : G  I  L  Q  S  N  A  R  R  T  C  S  N  V  T  K  T  L  M  L  I  E  I  L  T  N  E  I  L  G  N  W  *  N  T  N  G  A  A  H  F  L  H  I  L  *  W  R  I  M  L  D  W  L  V  V  *  S  V  S  A  V  T  *  E  C  V  *  *  N  N  C  I  M  V  Y  S  L  N  I  H  H  V  G  S  S  T  F  I  Q  L  C  L  L  L  L  S  T  H  P  L  F  S  F  *  F  *  K  N  E  S  F  L  Y  A  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72039" stop="71890"/>
                    <exon start="70992" stop="70797"/>
                    <exon start="70191" stop="70093"/>
                    <exon start="69982" stop="69931"/>
                    <exon start="69780" stop="69659"/>
                    <exon start="69577" stop="69477"/>
                    <exon start="69395" stop="69337"/>
                    <exon start="69073" stop="69017"/>
                    <exon start="68807" stop="68762"/>
                    <exon start="68463" stop="68384"/>
                    <exon start="68153" stop="68075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRKLIVDFMNNKAGRNMKNDGIDSANISALHCIDLSSPDIHTSVSLLKQACLDSGFFYVVNHGISQEFMDEVFAQSKKLFDLPLEEKMKLLRNEKHRGYTPSLDEHLDPDNQINGDYKEGYYIGVEVPEDDPEAQRPFYGSNVWPTAGTLPGWKETMEKYHQEALEVTKAVSRLIALALDLDVDFFDRPEFLGRPIATLRLLHYEGKLSDPSNGIFGAGAHSDYGLITLLATDDVSGLQICKDKDAKPQIWEYVPPLKSAFVVNLGDMLERWSNGVFRSTLHRVLANGQERFSIAYFMEPSHDCLVECLPTCQSKVNPPRYPPIKCETYLLQRYKDTHADRNSYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73519" e_stop="73480"/>
            <exon e_start="71996" e_stop="71890"/>
            <exon e_start="70992" e_stop="70797"/>
            <exon e_start="70191" e_stop="70093"/>
            <exon e_start="69982" e_stop="69931"/>
            <exon e_start="69780" e_stop="69659"/>
            <exon e_start="69577" e_stop="69477"/>
            <exon e_start="69395" e_stop="69337"/>
            <exon e_start="69073" e_stop="69017"/>
            <exon e_start="68807" e_stop="68762"/>
            <exon e_start="68463" e_stop="68384"/>
            <exon e_start="68153" e_stop="67804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.990"/>
          <exon-intron don_prob="0.739" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="0.981"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73519" e_stop="73480" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73479" i_stop="71997" i_length="1483"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71996" e_stop="71890" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="70992" e_stop="70797" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70191" e_stop="70093" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.739" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="69982" e_stop="69931" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69780" e_stop="69659" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69577" e_stop="69477" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="69395" e_stop="69337" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69073" e_stop="69017" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.901">
            <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68807" e_stop="68762" e_length="46"/>
          </exon>
          <intron i_serial="10" don_prob="0.917" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="68463" e_stop="68384" e_length="80"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="68153" e_stop="67804" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73519" stop="73480"/>
              <exon start="71996" stop="71890"/>
              <exon start="70992" stop="70895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71992" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71978" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69963" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69040" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68784" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCTCGATCTTTCACTTATTTCTGTATATATACATACAT : GAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG : GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG : GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG : GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT : TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG : GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG : ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAG : TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG : ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT : ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAG : GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAAAGATG</gDNA_template>
            <first_frame> A  L  D  L  S  L  I  S  V  Y  I  H  T   : *  R  N  M  K  N  D  G  I  D  S  A  N  I  S  A  L  H  C  I  D  L  S  S  P  D  I  H  T  S  V  S  L  L  K  Q  :  A  C  L  D  S  G  F  F  Y  V  V  N  H  G  I  S  Q  E  F  M  D  E  V  F  A  Q  S  K  K  L  F  D  L  P  L  E  E  K  M  K  L  L  R  N  E  K  H  R  G  Y  T  P  S  L  D  E  H  L  D  P  D  N  Q  I  N   : G  D  Y  K  E  G  Y  Y  I  G  V  E  V  P  E  D  D  P  E  A  Q  R  P  F  Y  G  S  N  V  W  P  T  A   : G  T  L  P  G  W  K  E  T  M  E  K  Y  H  Q  E  A  L :   E  V  T  K  A  V  S  R  L  I  A  L  A  L  D  L  D  V  D  F  F  D  R  P  E  F  L  G  R  P  I  A  T  L  R  L  L  H  Y  E   : G  K  L  S  D  P  S  N  G  I  F  G  A  G  A  H  S  D  Y  G  L  I  T  L  L  A  T  D  D  V  S  G  L  Q  :  I  C  K  D  K  D  A  K  P  Q  I  W  E  Y  V  P  P  L  K  S :   A  F  V  V  N  L  G  D  M  L  E  R  W  S  N  G  V  F  R :   S  T  L  H  R  V  L  A  N  G  Q  E  R  F  S  :  I  A  Y  F  M  E  P  S  H  D  C  L  V  E  C  L  P  T  C  Q  S  K  V  N  P  P  R :   Y  P  P  I  K  C  E  T  Y  L  L  Q  R  Y  K  D  T  H  A  D  R  N  S  Y  K  *  D  S  W  *  L  V  K  Y  K  W  R  R  T  F  L  A  H  I  I  M  A  N  N  V  G  L  A  C  G  L  I  C  I  C  S  Y  L  R  M  C  V  I  E  *  L  Y  N  G  L  *  F  E  Y  S  P  C  R  *  *  Y  I  Y  T  T  L  L  T  F  A  I  H  S  S  T  F  *  F  L  V  L  E  E  *  V  F  P  I  C  K  D  </first_frame>
            <second_frame>  P  S  I  F  H  L  F  L  Y  I  Y  I  H  :  E  G  T  *  R  M  M  E  L  I  L  P  T  F  L  L  Y  T  V  S  I  S  P  A  L  T  F  I  P  L  F  L  S  S  N  R :   L  A  *  I  Q  D  F  S  M  L  S  I  M  V  L  A  R  S  L  W  M  R  F  S  L  K  A  K  S  S  L  I  F  L  W  K  R  R  *  S  F  L  E  M  K  N  I  G  A  I  L  L  V  *  M  N  I  W  I  L  T  I  K  *  M  :  V  T  I  R  R  D  I  T  L  V  L  K  Y  L  K  M  I  L  K  L  R  D  H  F  M  G  Q  M  C  G  L  L  Q  :  V  P  C  L  D  G  R  K  L  W  R  S  I  I  K  R  H   : L  R  *  Q  K  Q  Y  Q  G  S  *  P  L  H  L  I  L  M  L  T  F  L  I  G  Q  S  F  L  A  D  Q  L  L  L  C  A  Y  C  I  M  K  :  A  N  F  L  I  H  Q  M  E  F  L  E  L  V  H  I  L  T  M  V  *  *  L  F  W  P  Q  M  M  S  L  A  F  R :   Y  A  R  I  R  M  Q  S  L  R  F  G  S  M  C  H  H  *  K   : V  L  L  *  *  I  L  V  I  C  L  S  A  G  A  M  V  F  S   : D  Q  H  C  I  G  S  L  Q  M  V  K  K  D  F  L :   L  H  I  L  W  S  Q  V  T  T  V  L  L  N  A  C  Q  P  A  N  P  K  S  T  H  R   : G  I  L  Q  S  N  A  R  R  T  C  S  N  V  T  K  T  L  M  L  I  E  I  L  T  N  E  I  L  G  N  W  *  N  T  N  G  A  A  H  F  L  H  I  L  *  W  R  I  M  L  D  W  L  V  V  *  S  V  S  A  V  T  *  E  C  V  *  *  N  N  C  I  M  V  Y  S  L  N  I  H  H  V  G  S  S  T  F  I  Q  L  C  L  L  L  L  S  T  H  P  L  F  S  F  *  F  *  K  N  E  S  F  L  Y  A  K  M </second_frame>
            <third_frame>   P  R  S  F  T  Y  F  C  I  Y  T  Y  M :   K  E  H  E  E  *  W  N  *  F  C  Q  H  F  C  F  T  L  Y  R  S  L  Q  P  *  H  S  Y  L  C  F  S  P  Q  T   : G  L  L  R  F  R  I  F  L  C  C  Q  S  W  Y  *  P  G  V  Y  G  *  G  F  R  S  K  Q  K  A  L  *  S  S  F  G  R  E  D  E  A  S  *  K  *  K  T  S  G  L  Y  S  *  S  R  *  T  F  G  S  *  Q  S  N  K  W :   *  L  *  G  G  I  L  H  W  C  *  S  T  *  R  *  S  *  S  S  E  T  I  L  W  V  K  C  V  A  Y  C  R :   Y  P  A  W  M  E  G  N  Y  G  E  V  S  S  R  G  T  :  *  G  D  K  S  S  I  K  A  H  S  P  C  T  *  S  *  C  *  L  F  *  S  A  R  V  S  W  Q  T  N  C  Y  F  A  P  T  A  L  *  R :   Q  T  F  *  S  I  K  W  N  F  W  S  W  C  T  F  *  L  W  S  D  N  S  F  G  H  R  *  C  L  W  P  S   : D  M  Q  G  *  G  C  K  A  S  D  L  G  V  C  A  T  I  E  K  :  C  F  C  S  E  S  W  *  Y  A  *  A  L  E  Q  W  C  F  Q  :  I  N  T  A  S  G  P  C  K  W  S  R  K  I  F   : Y  C  I  F  Y  G  A  K  S  R  L  S  C  *  M  L  A  N  L  P  I  Q  S  Q  P  T  E  :  V  S  S  N  Q  M  R  D  V  L  A  P  T  L  Q  R  H  S  C  *  *  K  F  L  Q  M  R  F  L  V  T  G  K  I  Q  M  A  P  H  I  S  C  T  Y  Y  N  G  E  *  C  W  T  G  L  W  F  N  L  Y  L  Q  L  L  E  N  V  C  D  R  I  I  V  *  W  F  I  V  *  I  F  T  M  *  V  V  V  H  L  Y  N  F  A  Y  F  C  Y  P  L  I  H  F  L  V  F  S  F  R  R  M  S  L  S  Y  M  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71994" stop="71890"/>
                    <exon start="70992" stop="70797"/>
                    <exon start="70191" stop="70093"/>
                    <exon start="69982" stop="69931"/>
                    <exon start="69780" stop="69659"/>
                    <exon start="69577" stop="69477"/>
                    <exon start="69395" stop="69337"/>
                    <exon start="69073" stop="69017"/>
                    <exon start="68807" stop="68762"/>
                    <exon start="68463" stop="68384"/>
                    <exon start="68153" stop="68075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNMKNDGIDSANISALHCIDLSSPDIHTSVSLLKQACLDSGFFYVVNHGISQEFMDEVFAQSKKLFDLPLEEKMKLLRNEKHRGYTPSLDEHLDPDNQINGDYKEGYYIGVEVPEDDPEAQRPFYGSNVWPTAGTLPGWKETMEKYHQEALEVTKAVSRLIALALDLDVDFFDRPEFLGRPIATLRLLHYEGKLSDPSNGIFGAGAHSDYGLITLLATDDVSGLQICKDKDAKPQIWEYVPPLKSAFVVNLGDMLERWSNGVFRSTLHRVLANGQERFSIAYFMEPSHDCLVECLPTCQSKVNPPRYPPIKCETYLLQRYKDTHADRNSYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73678" e_stop="73581"/>
            <exon e_start="71996" e_stop="71890"/>
            <exon e_start="70992" e_stop="70797"/>
            <exon e_start="70191" e_stop="70093"/>
            <exon e_start="69982" e_stop="69931"/>
            <exon e_start="69780" e_stop="69659"/>
            <exon e_start="69577" e_stop="69477"/>
            <exon e_start="69395" e_stop="69337"/>
            <exon e_start="69073" e_stop="69017"/>
            <exon e_start="68807" e_stop="68762"/>
            <exon e_start="68463" e_stop="68384"/>
            <exon e_start="68153" e_stop="67804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.896" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.995"/>
          <exon-intron don_prob="0.739" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73678" e_stop="73581" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.896" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73580" i_stop="71997" i_length="1584"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71996" e_stop="71890" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="71889" i_stop="70993" i_length="897"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="70992" e_stop="70797" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="70796" i_stop="70192" i_length="605"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70191" e_stop="70093" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.739" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70092" i_stop="69983" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69982" e_stop="69931" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="69930" i_stop="69781" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69780" e_stop="69659" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69658" i_stop="69578" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69577" e_stop="69477" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="69476" i_stop="69396" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="69395" e_stop="69337" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="69336" i_stop="69074" i_length="263"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69073" e_stop="69017" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.901">
            <gDNA_intron_boundary i_start="69016" i_stop="68808" i_length="209"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68807" e_stop="68762" e_length="46"/>
          </exon>
          <intron i_serial="10" don_prob="0.917" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68761" i_stop="68464" i_length="298"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="68463" e_stop="68384" e_length="80"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68383" i_stop="68154" i_length="230"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="68153" e_stop="67804" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73678" stop="73581"/>
              <exon start="71996" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71992" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71978" stop="71890"/>
              <exon start="70992" stop="70797"/>
              <exon start="70191" stop="70093"/>
              <exon start="69982" stop="69931"/>
              <exon start="69780" stop="69715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69963" stop="69931"/>
              <exon start="69780" stop="69659"/>
              <exon start="69577" stop="69477"/>
              <exon start="69395" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="69337"/>
              <exon start="69073" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69040" stop="69017"/>
              <exon start="68807" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68784" stop="68762"/>
              <exon start="68463" stop="68384"/>
              <exon start="68153" stop="67850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATATATTTGTGTCTTAGAGATTCTTCGAGACATTGGGTGGTAAGAGATTCTTTGGGGCCCATTGTTCTCTCCGTGAATCCTTGTTTATGGTGGA : GAAGGAACATGAAGAATGATGGAATTGATTCTGCCAACATTTCTGCTTTACACTGTATCGATCTCTCCAGCCCTGACATTCATACCTCTGTTTCTCTCCTCAAACAG : GCTTGCTTAGATTCAGGATTTTTCTATGTTGTCAATCATGGTATTAGCCAGGAGTTTATGGATGAGGTTTTCGCTCAAAGCAAAAAGCTCTTTGATCTTCCTTTGGAAGAGAAGATGAAGCTTCTTAGAAATGAAAAACATCGGGGCTATACTCCTAGTCTAGATGAACATTTGGATCCTGACAATCAAATAAATG : GTGACTATAAGGAGGGATATTACATTGGTGTTGAAGTACCTGAAGATGATCCTGAAGCTCAGAGACCATTTTATGGGTCAAATGTGTGGCCTACTGCAG : GTACCCTGCCTGGATGGAAGGAAACTATGGAGAAGTATCATCAAGAGGCACT : TGAGGTGACAAAAGCAGTATCAAGGCTCATAGCCCTTGCACTTGATCTTGATGTTGACTTTTTTGATCGGCCAGAGTTTCTTGGCAGACCAATTGCTACTTTGCGCCTACTGCATTATGAAG : GCAAACTTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCACATTCTGACTATGGTCTGATAACTCTTTTGGCCACAGATGATGTCTCTGGCCTTCAG : ATATGCAAGGATAAGGATGCAAAGCCTCAGATTTGGGAGTATGTGCCACCATTGAAAAG : TGCTTTTGTAGTGAATCTTGGTGATATGCTTGAGCGCTGGAGCAATGGTGTTTTCAG : ATCAACACTGCATCGGGTCCTTGCAAATGGTCAAGAAAGATTTTCT : ATTGCATATTTTATGGAGCCAAGTCACGACTGTCTTGTTGAATGCTTGCCAACCTGCCAATCCAAAGTCAACCCACCGAG : GTATCCTCCAATCAAATGCGAGACGTACTTGCTCCAACGTTACAAAGACACTCATGCTGATAGAAATTCTTACAAATGAGATTCTTGGTAACTGGTAAAATACAAATGGCGCCGCACATTTCTTGCACATATTATAATGGCGAATAATGTTGGACTGGCTTGTGGTTTAATCTGTATCTGCAGTTACTTGAGAATGTGTGTGATAGAATAATTGTATAATGGTTTATAGTTTGAATATTCACCATGTAGGTAGTAGTACATTTATACAACTTTGCTTACTTTTGCTATCCACTCATCCACTTTTTAGTTTTTAGTTTTAGAAGAATGAGTCTTTCCTATATGCAAAGATG</gDNA_template>
            <first_frame> R  N  I  F  V  S  *  R  F  F  E  T  L  G  G  K  R  F  F  G  A  H  C  S  L  R  E  S  L  F  M  V  E :   K  E  H  E  E  *  W  N  *  F  C  Q  H  F  C  F  T  L  Y  R  S  L  Q  P  *  H  S  Y  L  C  F  S  P  Q  T   : G  L  L  R  F  R  I  F  L  C  C  Q  S  W  Y  *  P  G  V  Y  G  *  G  F  R  S  K  Q  K  A  L  *  S  S  F  G  R  E  D  E  A  S  *  K  *  K  T  S  G  L  Y  S  *  S  R  *  T  F  G  S  *  Q  S  N  K  W :   *  L  *  G  G  I  L  H  W  C  *  S  T  *  R  *  S  *  S  S  E  T  I  L  W  V  K  C  V  A  Y  C  R :   Y  P  A  W  M  E  G  N  Y  G  E  V  S  S  R  G  T  :  *  G  D  K  S  S  I  K  A  H  S  P  C  T  *  S  *  C  *  L  F  *  S  A  R  V  S  W  Q  T  N  C  Y  F  A  P  T  A  L  *  R :   Q  T  F  *  S  I  K  W  N  F  W  S  W  C  T  F  *  L  W  S  D  N  S  F  G  H  R  *  C  L  W  P  S   : D  M  Q  G  *  G  C  K  A  S  D  L  G  V  C  A  T  I  E  K  :  C  F  C  S  E  S  W  *  Y  A  *  A  L  E  Q  W  C  F  Q  :  I  N  T  A  S  G  P  C  K  W  S  R  K  I  F   : Y  C  I  F  Y  G  A  K  S  R  L  S  C  *  M  L  A  N  L  P  I  Q  S  Q  P  T  E  :  V  S  S  N  Q  M  R  D  V  L  A  P  T  L  Q  R  H  S  C  *  *  K  F  L  Q  M  R  F  L  V  T  G  K  I  Q  M  A  P  H  I  S  C  T  Y  Y  N  G  E  *  C  W  T  G  L  W  F  N  L  Y  L  Q  L  L  E  N  V  C  D  R  I  I  V  *  W  F  I  V  *  I  F  T  M  *  V  V  V  H  L  Y  N  F  A  Y  F  C  Y  P  L  I  H  F  L  V  F  S  F  R  R  M  S  L  S  Y  M  Q  R   </first_frame>
            <second_frame>  E  I  Y  L  C  L  R  D  S  S  R  H  W  V  V  R  D  S  L  G  P  I  V  L  S  V  N  P  C  L  W  W   : R  R  N  M  K  N  D  G  I  D  S  A  N  I  S  A  L  H  C  I  D  L  S  S  P  D  I  H  T  S  V  S  L  L  K  Q  :  A  C  L  D  S  G  F  F  Y  V  V  N  H  G  I  S  Q  E  F  M  D  E  V  F  A  Q  S  K  K  L  F  D  L  P  L  E  E  K  M  K  L  L  R  N  E  K  H  R  G  Y  T  P  S  L  D  E  H  L  D  P  D  N  Q  I  N   : G  D  Y  K  E  G  Y  Y  I  G  V  E  V  P  E  D  D  P  E  A  Q  R  P  F  Y  G  S  N  V  W  P  T  A   : G  T  L  P  G  W  K  E  T  M  E  K  Y  H  Q  E  A  L :   E  V  T  K  A  V  S  R  L  I  A  L  A  L  D  L  D  V  D  F  F  D  R  P  E  F  L  G  R  P  I  A  T  L  R  L  L  H  Y  E   : G  K  L  S  D  P  S  N  G  I  F  G  A  G  A  H  S  D  Y  G  L  I  T  L  L  A  T  D  D  V  S  G  L  Q  :  I  C  K  D  K  D  A  K  P  Q  I  W  E  Y  V  P  P  L  K  S :   A  F  V  V  N  L  G  D  M  L  E  R  W  S  N  G  V  F  R :   S  T  L  H  R  V  L  A  N  G  Q  E  R  F  S  :  I  A  Y  F  M  E  P  S  H  D  C  L  V  E  C  L  P  T  C  Q  S  K  V  N  P  P  R :   Y  P  P  I  K  C  E  T  Y  L  L  Q  R  Y  K  D  T  H  A  D  R  N  S  Y  K  *  D  S  W  *  L  V  K  Y  K  W  R  R  T  F  L  A  H  I  I  M  A  N  N  V  G  L  A  C  G  L  I  C  I  C  S  Y  L  R  M  C  V  I  E  *  L  Y  N  G  L  *  F  E  Y  S  P  C  R  *  *  Y  I  Y  T  T  L  L  T  F  A  I  H  S  S  T  F  *  F  L  V  L  E  E  *  V  F  P  I  C  K  D  </second_frame>
            <third_frame>   K  Y  I  C  V  L  E  I  L  R  D  I  G  W  *  E  I  L  W  G  P  L  F  S  P  *  I  L  V  Y  G  G  :  E  G  T  *  R  M  M  E  L  I  L  P  T  F  L  L  Y  T  V  S  I  S  P  A  L  T  F  I  P  L  F  L  S  S  N  R :   L  A  *  I  Q  D  F  S  M  L  S  I  M  V  L  A  R  S  L  W  M  R  F  S  L  K  A  K  S  S  L  I  F  L  W  K  R  R  *  S  F  L  E  M  K  N  I  G  A  I  L  L  V  *  M  N  I  W  I  L  T  I  K  *  M  :  V  T  I  R  R  D  I  T  L  V  L  K  Y  L  K  M  I  L  K  L  R  D  H  F  M  G  Q  M  C  G  L  L  Q  :  V  P  C  L  D  G  R  K  L  W  R  S  I  I  K  R  H   : L  R  *  Q  K  Q  Y  Q  G  S  *  P  L  H  L  I  L  M  L  T  F  L  I  G  Q  S  F  L  A  D  Q  L  L  L  C  A  Y  C  I  M  K  :  A  N  F  L  I  H  Q  M  E  F  L  E  L  V  H  I  L  T  M  V  *  *  L  F  W  P  Q  M  M  S  L  A  F  R :   Y  A  R  I  R  M  Q  S  L  R  F  G  S  M  C  H  H  *  K   : V  L  L  *  *  I  L  V  I  C  L  S  A  G  A  M  V  F  S   : D  Q  H  C  I  G  S  L  Q  M  V  K  K  D  F  L :   L  H  I  L  W  S  Q  V  T  T  V  L  L  N  A  C  Q  P  A  N  P  K  S  T  H  R   : G  I  L  Q  S  N  A  R  R  T  C  S  N  V  T  K  T  L  M  L  I  E  I  L  T  N  E  I  L  G  N  W  *  N  T  N  G  A  A  H  F  L  H  I  L  *  W  R  I  M  L  D  W  L  V  V  *  S  V  S  A  V  T  *  E  C  V  *  *  N  N  C  I  M  V  Y  S  L  N  I  H  H  V  G  S  S  T  F  I  Q  L  C  L  L  L  L  S  T  H  P  L  F  S  F  *  F  *  K  N  E  S  F  L  Y  A  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73677" stop="73581"/>
                    <exon start="71996" stop="71890"/>
                    <exon start="70992" stop="70797"/>
                    <exon start="70191" stop="70093"/>
                    <exon start="69982" stop="69931"/>
                    <exon start="69780" stop="69659"/>
                    <exon start="69577" stop="69477"/>
                    <exon start="69395" stop="69337"/>
                    <exon start="69073" stop="69017"/>
                    <exon start="68807" stop="68762"/>
                    <exon start="68463" stop="68384"/>
                    <exon start="68153" stop="68075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIYLCLRDSSRHWVVRDSLGPIVLSVNPCLWWRRNMKNDGIDSANISALHCIDLSSPDIHTSVSLLKQACLDSGFFYVVNHGISQEFMDEVFAQSKKLFDLPLEEKMKLLRNEKHRGYTPSLDEHLDPDNQINGDYKEGYYIGVEVPEDDPEAQRPFYGSNVWPTAGTLPGWKETMEKYHQEALEVTKAVSRLIALALDLDVDFFDRPEFLGRPIATLRLLHYEGKLSDPSNGIFGAGAHSDYGLITLLATDDVSGLQICKDKDAKPQIWEYVPPLKSAFVVNLGDMLERWSNGVFRSTLHRVLANGQERFSIAYFMEPSHDCLVECLPTCQSKVNPPRYPPIKCETYLLQRYKDTHADRNSYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="80944" PGL_stop="82057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80944" e_stop="82057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="80944" e_stop="82057" e_length="1114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80944" stop="81641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80954" stop="81410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80958" stop="81393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80971" stop="81531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81009" stop="81325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81268" stop="82057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81607" stop="82057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255823" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCGGCCGCCGGCACTCTCGTCGGGAGAGAGATCAGAATCACAGAATTTTGCTCGCCAGCGAATTCTATGAAGCGATCTAAGGATCCTTTTGAGGCTACTTTTGAGGAGCAGGATGATTCACCCCCTGAATCCCCTGCTGGCACCGATGAGAATGAAGGCCAAGATCACGGTGCAGTTGGTGTTAATATGAATGAAGGTGACGATGTTAATACCGATTCTCGTGAAAAACCTTCAACATCTAAAGCTACTTCAGTCTCTGTTAGTACTGCTGGTCCAATTAGCAAACCCAAAGAGGAAGATGAGGAGGAAGAGGAAGAAAGCATGGATGTGCAGTTAGGAAAACTCTCATCAAGTAGTGATCCTGACAAACTGGCGAAGATGCAGTCCATCTTATCCCAATTTACAGAGGAGCAGATGAGTAGATATGAATCTTTTAGGAGATCTGGATTTCAGAAATCCAACATGAAGCGGTTGCTGACCAACATCACAGGAAGTGCAAAGATATCTATTCCTATGACAATTGTGGTGTCTGGGATAGCAAAAATGTTTGTCGGTGAGCTTATTGAAACAGCTAAAATGGTGATGGCAGAGAGAAAAGATACAGGCCCAATCAGGCCATGCCACATAAGAGAAGCATATAGAAGGTTAAAACTTGAAGGCAAGATTCCAAAAAAATCAGTGCCAAGGCTTTTCCGGTAGTGAACGTGGAAGCAACCTGTAGTTATATTTCAGATTTGTAGTAGTCAGCCACTTTCCTCGCAGAAAGGCGTAAGGATGAACTTGTAAATCTTGGACGAAAAGATTCATGAGGTGTACCTTTACAAGGTGAGGCTTTAGCTTCTCTTTGAAATGTTGGGGTTCCATTAAAGAAGTAAATTTCGAGGGGCATCAGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCTGAACAAATTGTTTCTTAACTGTGTAGTTTTTGGTGTTGGTACATTGAGTTTCAGCTGTTGCCATCATTTTTCCCTTTTTCCAGAAGGGCATACTTAGGATACATGAAATTATGAAAATAGTAGAAAATGTTTGGAAAAAACAGATCGAGTTAAGTGGCATTCCAA</gDNA_template>
            <first_frame> T  G  R  R  H  S  R  R  E  R  D  Q  N  H  R  I  L  L  A  S  E  F  Y  E  A  I  *  G  S  F  *  G  Y  F  *  G  A  G  *  F  T  P  *  I  P  C  W  H  R  *  E  *  R  P  R  S  R  C  S  W  C  *  Y  E  *  R  *  R  C  *  Y  R  F  S  *  K  T  F  N  I  *  S  Y  F  S  L  C  *  Y  C  W  S  N  *  Q  T  Q  R  G  R  *  G  G  R  G  R  K  H  G  C  A  V  R  K  T  L  I  K  *  *  S  *  Q  T  G  E  D  A  V  H  L  I  P  I  Y  R  G  A  D  E  *  I  *  I  F  *  E  I  W  I  S  E  I  Q  H  E  A  V  A  D  Q  H  H  R  K  C  K  D  I  Y  S  Y  D  N  C  G  V  W  D  S  K  N  V  C  R  *  A  Y  *  N  S  *  N  G  D  G  R  E  K  R  Y  R  P  N  Q  A  M  P  H  K  R  S  I  *  K  V  K  T  *  R  Q  D  S  K  K  I  S  A  K  A  F  P  V  V  N  V  E  A  T  C  S  Y  I  S  D  L  *  *  S  A  T  F  L  A  E  R  R  K  D  E  L  V  N  L  G  R  K  D  S  *  G  V  P  L  Q  G  E  A  L  A  S  L  *  N  V  G  V  P  L  K  K  *  I  S  R  G  I  S  H  G  G  K  R  A  L  T  L  T  K  G  L  A  G  R  R  S  *  T  N  C  F  L  T  V  *  F  L  V  L  V  H  *  V  S  A  V  A  I  I  F  P  F  F  Q  K  G  I  L  R  I  H  E  I  M  K  I  V  E  N  V  W  K  K  Q  I  E  L  S  G  I  P  </first_frame>
            <second_frame>  P  A  A  G  T  L  V  G  R  E  I  R  I  T  E  F  C  S  P  A  N  S  M  K  R  S  K  D  P  F  E  A  T  F  E  E  Q  D  D  S  P  P  E  S  P  A  G  T  D  E  N  E  G  Q  D  H  G  A  V  G  V  N  M  N  E  G  D  D  V  N  T  D  S  R  E  K  P  S  T  S  K  A  T  S  V  S  V  S  T  A  G  P  I  S  K  P  K  E  E  D  E  E  E  E  E  E  S  M  D  V  Q  L  G  K  L  S  S  S  S  D  P  D  K  L  A  K  M  Q  S  I  L  S  Q  F  T  E  E  Q  M  S  R  Y  E  S  F  R  R  S  G  F  Q  K  S  N  M  K  R  L  L  T  N  I  T  G  S  A  K  I  S  I  P  M  T  I  V  V  S  G  I  A  K  M  F  V  G  E  L  I  E  T  A  K  M  V  M  A  E  R  K  D  T  G  P  I  R  P  C  H  I  R  E  A  Y  R  R  L  K  L  E  G  K  I  P  K  K  S  V  P  R  L  F  R  *  *  T  W  K  Q  P  V  V  I  F  Q  I  C  S  S  Q  P  L  S  S  Q  K  G  V  R  M  N  L  *  I  L  D  E  K  I  H  E  V  Y  L  Y  K  V  R  L  *  L  L  F  E  M  L  G  F  H  *  R  S  K  F  R  G  A  S  A  M  V  G  R  E  L  S  P  *  R  K  D  W  Q  D  E  D  P  E  Q  I  V  S  *  L  C  S  F  W  C  W  Y  I  E  F  Q  L  L  P  S  F  F  P  F  S  R  R  A  Y  L  G  Y  M  K  L  *  K  *  *  K  M  F  G  K  N  R  S  S  *  V  A  F  Q </second_frame>
            <third_frame>   R  P  P  A  L  S  S  G  E  R  S  E  S  Q  N  F  A  R  Q  R  I  L  *  S  D  L  R  I  L  L  R  L  L  L  R  S  R  M  I  H  P  L  N  P  L  L  A  P  M  R  M  K  A  K  I  T  V  Q  L  V  L  I  *  M  K  V  T  M  L  I  P  I  L  V  K  N  L  Q  H  L  K  L  L  Q  S  L  L  V  L  L  V  Q  L  A  N  P  K  R  K  M  R  R  K  R  K  K  A  W  M  C  S  *  E  N  S  H  Q  V  V  I  L  T  N  W  R  R  C  S  P  S  Y  P  N  L  Q  R  S  R  *  V  D  M  N  L  L  G  D  L  D  F  R  N  P  T  *  S  G  C  *  P  T  S  Q  E  V  Q  R  Y  L  F  L  *  Q  L  W  C  L  G  *  Q  K  C  L  S  V  S  L  L  K  Q  L  K  W  *  W  Q  R  E  K  I  Q  A  Q  S  G  H  A  T  *  E  K  H  I  E  G  *  N  L  K  A  R  F  Q  K  N  Q  C  Q  G  F  S  G  S  E  R  G  S  N  L  *  L  Y  F  R  F  V  V  V  S  H  F  P  R  R  K  A  *  G  *  T  C  K  S  W  T  K  R  F  M  R  C  T  F  T  R  *  G  F  S  F  S  L  K  C  W  G  S  I  K  E  V  N  F  E  G  H  Q  P  W  W  E  E  S  S  H  L  D  E  R  I  G  R  T  K  I  L  N  K  L  F  L  N  C  V  V  F  G  V  G  T  L  S  F  S  C  C  H  H  F  S  L  F  P  E  G  H  T  *  D  T  *  N  Y  E  N  S  R  K  C  L  E  K  T  D  R  V  K  W  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80945" stop="81643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAAGTLVGREIRITEFCSPANSMKRSKDPFEATFEEQDDSPPESPAGTDENEGQDHGAVGVNMNEGDDVNTDSREKPSTSKATSVSVSTAGPISKPKEEDEEEEEESMDVQLGKLSSSSDPDKLAKMQSILSQFTEEQMSRYESFRRSGFQKSNMKRLLTNITGSAKISIPMTIVVSGIAKMFVGELIETAKMVMAERKDTGPIRPCHIREAYRRLKLEGKIPKKSVPRLFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81774" stop="81989"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSFSLKCWGSIKEVNFEGHQPWWEESSHLDERIGRTKILNKLFLNCVVFGVGTLSFSCCHHFSLFPEGHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="83275" PGL_stop="84152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83275" e_stop="83825"/>
            <exon e_start="83934" e_stop="84152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="83275" e_stop="83825" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83826" i_stop="83933" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="83934" e_stop="84152" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83275" stop="83825"/>
              <exon start="83934" stop="84152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTATTGATAACACAACGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAGGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTTCAAAAG : TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTATAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</gDNA_template>
            <first_frame> N  L  V  *  M  I  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  L  K  S  I  S  L  V  Q  S  I  V  L  Q  S  I  N  *  F  K  G  L  R  W  V  I  G  R  A  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  T  Q  R  Y  L  L  S  T  F  *  W  L  K  M  V  D  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  T  L  V  K  S  C  T  D  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  Q  K  *  L  *  E  N  A  M  S  S  Q  E  Y  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  P  P  F  F  K  S :   *  N  A  C  S  N  I  V  P  T  A  E  E  I  E  A  F  D  I  A  Q  V  E  H  A  H  S  T  S  I  P  L  V  Q  P  N  E  Q  D  D  L  D  D  F  S  T  R  P  P  E  Q  L  L  R  T  Y  S  I  V  S  D  T  S  P  P  P  P  P  K  R  R  K   </first_frame>
            <second_frame>  I  W  Y  R  *  F  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  *  K  V  F  P  W  C  S  Q  *  C  Y  K  A  S  T  S  S  K  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  Y  Y  *  *  H  N  D  I  Y  C  R  L  S  N  G  *  R  W  *  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  R  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  R  N  S  C  E  R  T  Q  C  H  P  R  N  M  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  Y  V  H  H  F  S  K   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  L  L  I  L  L  K  L  N  M  L  I  L  H  Q  Y  H  *  Y  N  Q  T  S  K  M  I  *  M  I  S  P  Q  D  R  Q  N  S  Y  *  G  H  I  L  *  C  L  I  H  L  L  H  H  R  Q  K  E  E  K  </second_frame>
            <third_frame>   F  G  I  D  D  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  K  K  Y  F  P  G  A  V  N  S  V  T  K  H  Q  L  V  Q  R  F  K  M  G  N  W  E  S  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  T  I  D  N  T  T  I  S  I  V  D  F  L  M  V  E  D  G  R  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  R  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  G  I  C  N  W  R  V  V  S  E  K  A  K  F  E  M  L  M  S  T  I  F  Q  K  :  L  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  Y  C  S  S  *  T  C  S  F  Y  I  N  T  I  S  T  T  K  R  A  R  *  F  R  *  F  L  H  K  T  A  R  T  V  I  E  D  I  F  Y  S  V  *  Y  I  S  S  T  T  A  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83277" stop="83825"/>
                    <exon start="83934" stop="83978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDDFALLTGLKVRGNTNDFKYPEQTNCMLFKKYFPGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLATIDNTTISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECASNLNSEIAVRERNVIPGICNWRVVSEKAKFEMLMSTIFQKLECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="84537" PGL_stop="85445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84537" e_stop="84817"/>
            <exon e_start="85021" e_stop="85143"/>
            <exon e_start="85227" e_stop="85445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.972"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.976"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="84537" e_stop="84817" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="84818" i_stop="85020" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="85021" e_stop="85143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85144" i_stop="85226" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="85227" e_stop="85445" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84537" stop="84817"/>
              <exon start="85021" stop="85143"/>
              <exon start="85227" stop="85445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGTGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCAGTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAATGGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCTAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGTAGTTACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  W  M  S  M  W  M  V  L  V  L  P  *  M  R  V  N  Q  *  S  V  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  K  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  W  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  M  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  R  L  L  L  K  L  M  *  L  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  S  G  C  R  C  G  W  C  W  C  C  R  K  *  G  *  T  N  S  Q  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  S  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  G  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  C  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  L  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  Y  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  V  D  V  D  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  S  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  A  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  M  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  D  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  *  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  E  I  A  V  K  T  D  V  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84539" stop="84817"/>
                    <exon start="85021" stop="85143"/>
                    <exon start="85227" stop="85361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAVDVDVDGVGVAVNEGEPIVSDPKDGDAHQSHQDLNEHIMDQAVDDNVHHNIPHVLPEKTTMDSSDSSTSTTISPSTQAAIDALIKDLGKDATNARPLYSYDPKNITSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="88448" PGL_stop="87930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88448" e_stop="87930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="88448" e_stop="87930" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88448" stop="87930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACCGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATATCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTTAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> L  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  L  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  S  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  P  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  Y  R  *  T  Q  T  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  *  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  R  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  R  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  I  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  F  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88448" stop="88071"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="98488" PGL_stop="98723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98488" e_stop="98723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="98488" e_stop="98723" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCAATGATACCTACTCATTACCCGTGTTTGTACTGACCCCCTACTTTTATGTGTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  E  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  Q  *  Y  L  L  I  T  R  V  C  T  D  P  L  L  L  C  V  L  L  C  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  N  D  T  Y  S  L  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   M  N  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  H  Y  P  C  L  Y  *  P  P  T  F  M  C  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0101E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="100206" PGL_stop="99416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100206" e_stop="99416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="100206" e_stop="99416" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100206" stop="99487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100203" stop="99540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99848" stop="99416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGACATACCGGGATAATGCACGAAACTTAGCCGCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCTCTCTTCCTATCCCTCAAAGTCCGGGAAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCGTTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGATGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTTCTCAGTCGGTGGAGGAGTCACTGCACTAGTATCAGATGGGATAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  Q  L  G  D  I  P  G  *  C  T  K  L  S  R  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  V  S  L  P  I  P  Q  S  P  G  N  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  R  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  S  L  E  L  I  S  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  V  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  *  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  K  H  L  I  Y  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  T  S  I  R  W  D  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  H  S  W  V  T  Y  R  D  N  A  R  N  L  A  A  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  E  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  W  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  D  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  F  S  V  G  G  G  V  T  A  L  V  S  D  G  I  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  T  V  G  *  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  R  L  S  S  Y  P  S  K  S  G  K  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  A  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  F  L  G  T  D  K  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  R  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  M  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  Q  A  P  D  L  S  S  L  G  *  A  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  S  Q  S  V  E  E  S  L  H  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99678" stop="99418"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRKHWRCLTLIRQPTKISKHLIYHLWGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCTSIRWDRCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100205" stop="99996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKHSWVTYRDNARNLAAYAVTDILPCSRLKNSSLFLSLKVREIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99614" stop="99417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNPSFCTCSFSPSSPSLITFSVGGGVTALVSDGIGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="99483" PGL_stop="100036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99483" e_stop="100036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="99483" e_stop="100036" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99483" stop="100036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTATCCCATCTGATACTAGTGCAGTGACTCCTCCACCGACTGAGAAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCATCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAACGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGACTTATCAGTTCCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  Y  P  I  *  Y  *  C  S  D  S  S  T  D  *  E  S  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  S  G  A  C  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  I  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  R  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  D  L  S  V  P  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  I  P  S  D  T  S  A  V  T  P  P  P  T  E  K  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  S  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  S  H  L  I  L  V  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  S  L  P  Q  R  *  *  I  R  C  L  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  T  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  L  I  S  S  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  R  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99484" stop="100035"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIPSDTSAVTPPPTEKVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSASTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100110" PGL_stop="101511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100110" e_stop="100282"/>
            <exon e_start="101027" e_stop="101511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="100110" e_stop="100282" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100283" i_stop="101026" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="101027" e_stop="101511" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100110" stop="100282"/>
              <exon start="101027" stop="101511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGCGGCTAAGTTTCGTGCATTATCCCGGTATGTCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATTAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCAAAATCTTTCCAAG : AAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTATAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACGCTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATTTCAAGGATGAAACTACCCACGTACCTTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTATATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAATTTTGTTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  C  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  S  P  F  C  E  R  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  K  I  F  P  R :   N  G  *  L  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  R  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  F  Q  G  *  N  Y  P  R  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  P  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  N  F  V  </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  A  A  K  F  R  A  L  S  R  Y  V  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  L  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  A  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  F  K  D  E  T  T  H  V  P  S  I  E  L  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  S  P  N  C  V  S  V  H  K  S  G  F  A  V  L  *  K  G  *  D  *  S  C  G  F  Q  P  Y  R  *  R  L  Q  Q  N  L  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  I  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  K  L  P  T  Y  L  R  L  S  W  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  P  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  Q  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100111" stop="100282"/>
                    <exon start="101027" stop="101511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYAAKFRALSRYVTQLCFSPQERIRRFVKGLRLELRISALQVAATAKSFQEMVDFDVILGMTWLSPNFAILDYNAKTVTLAKPGTDPLVWEGDYASNPVRIISFLRAKKMVSKGCLAFLAHFKDETTHVPSIELVSVVREFLDVFPADLPGMPPDRDIDFYIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPILF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="102126" PGL_stop="100369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102126" e_stop="100369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="102126" e_stop="100369" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102126" stop="101414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102126" stop="101531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102126" stop="101601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102055" stop="101376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102055" stop="101697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101606" stop="100948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101537" stop="100776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101537" stop="100877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101134" stop="100804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100927" stop="100369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCTTAAGACCAAAAAACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTACTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTGGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAAGGTACGTGGGTAGTTTCATCCTTGAAATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGCGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCAATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTAACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGTTTTGGTGACCACCATTACTTCGACCACCACGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGATAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCGTTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  *  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  P  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  L  K  T  K  K  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  G  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  T  H  P  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  N  E  A  F  A  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  G  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  I  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  Q  L  N  R  R  Y  V  G  S  F  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  I  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  C  L  R  F  *  P  P  R  E  S  V  T  M  G  P  F  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  T  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  T  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  D  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  *  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  V  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  D  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  L  R  P  K  N  I  T  T  N  L  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  T  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  N  S  I  E  G  T  W  V  V  S  S  L  K  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  A  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  Q  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  I  E  R  L  P  V  M  T  A  S  D  V  S  A  S  N  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  L  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  I  S  P  H  P  *  H  S  L  G  S  S  I  G  L  S  D  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  *  I  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  C  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  L  S  I  D  D  N  R  I  S  S  Q  S  W  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  Y  T  S  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  G  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  R  G  *  F  H  P  *  N  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  R  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  N  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  S  K  D  Y  L  *  *  Q  H  L  M  S  P  L  L  T  A  Q  G  K  R  N  N  G  P  F  R  L  F  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  D  R  F  G  D  H  H  Y  F  D  H  H  V  L  Q  N  D  D  L  F  H  N  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  R  S  P  H  I  H  N  T  L  W  V  Q  A  *  V  S  Q  I  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  L  N  P  V  L  *  S  K  N  R  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101713" stop="101471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQSLAHPLPVLSIDDNRISSQSWRRHKHLVTDRTSHQCEEEDTCSLWLPCSTAGSLYTSENSHPSSSQTKLEHPKEMHLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101862" stop="101623"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPVHQAHESSRGILKTKKHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLGEDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100695" stop="100483"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPTVLVTTITSTTTSSRMTTSSITTSTSNIWRSVTLFWTIPLNVSDLPTSITLSGFKHRSLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101421" stop="101221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGGHSIRGYRNGASTRFKINIEVNIPIWWHTRKICREHIQKLTDHRNQLNRRYVGSFILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101354" stop="101154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSISLSGGIPGRSAGNTSRNSRTTETNSIEGTWVVSSLKCAKKAKHPLLTIFLARRKEMIRTGLEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101930" stop="101733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTLLKCSSCSFLLFEYTNISSMNTITKRSRYGLKIPFIKLMKAAGAFLRPKNITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="105075" PGL_stop="105747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105075" e_stop="105250"/>
            <exon e_start="105405" e_stop="105747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="105075" e_stop="105250" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105251" i_stop="105404" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="105405" e_stop="105747" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105075" stop="105250"/>
              <exon start="105405" stop="105747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGAATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAGCCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATAATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R :   I  V  Y  G  S  G  A  T  F  R  Y  Q  N  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P   : G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  D  V  N  I  F  N  L  M  S  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  N  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  :  D  S  I  W  I  G  C  H  V  P  V  P  E  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  A  E  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  I  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0101E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="124259" PGL_stop="125386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124259" e_stop="124288"/>
            <exon e_start="124831" e_stop="125386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.723" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="124259" e_stop="124288" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.723" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124289" i_stop="124830" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="124831" e_stop="125386" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124259" stop="124288"/>
              <exon start="124831" stop="125386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGTTCTGTGGTAAACTTGAACTTATAA : AAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGTCATCACTAAGGTAGCCTTTTCCTACATACATATCATTCTTGCTTATTACTACTTTATCATAAACAAATACACATTTGAATCCATTCTTGGTAAGTACTGAAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCTTATTCAAAGTCACCACCTTGCCTAATGTCATTTTTAATAGGACTATGCCAGTTCCTTCCACCCTTGCAACAACGGAGTTTGCCATAAACAACTTCTCAACTGTAGGTGCTGGAGTATATGATGAAAATAATTCTTTATTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTAAAAGCATTGCACAGAGATCGTCTATTTCTCCTTTGGATTCAGCCAAGTTAGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACTCCGAAATTCAGTAGCCCTATGACCATGTTTACCACAGTTGAAGCAGTTTTCATTGAATTTATT</gDNA_template>
            <first_frame> T  S  S  V  V  N  L  N  L  *  :  K  K  Q  N  L  Y  S  Y  Q  L  Q  L  H  *  V  *  K  G  H  H  *  G  S  L  F  L  H  T  Y  H  S  C  L  L  L  L  Y  H  K  Q  I  H  I  *  I  H  S  W  *  V  L  K  L  K  L  N  S  F  S  I  L  E  H  M  R  P  Y  S  K  S  P  P  C  L  M  S  F  L  I  G  L  C  Q  F  L  P  P  L  Q  Q  R  S  L  P  *  T  T  S  Q  L  *  V  L  E  Y  M  M  K  I  I  L  Y  W  H  K  H  G  M  R  H  Q  N  L  S  T  I  L  L  D  F  Q  P  S  Y  I  L  K  A  L  H  R  D  R  L  F  L  L  W  I  Q  P  S  *  L  D  P  S  F  S  C  P  S  *  D  S  E  I  Q  *  P  Y  D  H  V  Y  H  S  *  S  S  F  H  *  I  Y  </first_frame>
            <second_frame>  Q  V  L  W  *  T  *  T  Y  K :   R  S  K  I  F  I  H  I  N  C  N  Y  I  E  F  E  K  V  I  T  K  V  A  F  S  Y  I  H  I  I  L  A  Y  Y  Y  F  I  I  N  K  Y  T  F  E  S  I  L  G  K  Y  *  N  *  N  *  I  L  S  Q  F  W  N  I  *  D  L  I  Q  S  H  H  L  A  *  C  H  F  *  *  D  Y  A  S  S  F  H  P  C  N  N  G  V  C  H  K  Q  L  L  N  C  R  C  W  S  I  *  *  K  *  F  F  I  G  T  N  M  A  *  G  T  R  I  Y  P  P  F  S  W  I  S  N  Q  V  T  F  *  K  H  C  T  E  I  V  Y  F  S  F  G  F  S  Q  V  S  L  I  L  L  F  L  V  L  L  R  T  P  K  F  S  S  P  M  T  M  F  T  T  V  E  A  V  F  I  E  F  I </second_frame>
            <third_frame>   K  F  C  G  K  L  E  L  I   : K  E  A  K  S  L  F  I  S  T  A  I  T  L  S  L  K  R  S  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  I  T  T  L  S  *  T  N  T  H  L  N  P  F  L  V  S  T  E  I  E  T  K  F  F  L  N  S  G  T  Y  E  T  L  F  K  V  T  T  L  P  N  V  I  F  N  R  T  M  P  V  P  S  T  L  A  T  T  E  F  A  I  N  N  F  S  T  V  G  A  G  V  Y  D  E  N  N  S  L  L  A  Q  T  W  H  E  A  P  E  S  I  H  H  S  L  G  F  P  T  K  L  H  S  K  S  I  A  Q  R  S  S  I  S  P  L  D  S  A  K  L  A  *  S  F  F  F  L  S  F  L  G  L  R  N  S  V  A  L  *  P  C  L  P  Q  L  K  Q  F  S  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124947" stop="125294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNTHLNPFLVSTEIETKFFLNSGTYETLFKVTTLPNVIFNRTMPVPSTLATTEFAINNFSTVGAGVYDENNSLLAQTWHEAPESIHHSLGFPTKLHSKSIAQRSSISPLDSAKLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="125536" PGL_stop="124309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125536" e_stop="124828"/>
            <exon e_start="124329" e_stop="124309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.293" e_score="0.935"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="125536" e_stop="124828" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.293">
            <gDNA_intron_boundary i_start="124827" i_stop="124330" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="124329" e_stop="124309" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125536" stop="124828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125362" stop="124828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125330" stop="124828"/>
              <exon start="124329" stop="124309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCATGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATGCCACAAAAAATTAAAGAAAAGAAACAAAGCATATGTCCAAAAAGCAATCCTCCTAAGAATAAATTCAATGAAAACTGCTTCAACTGTGGTAAACATGGTCATAGGGCTACTGAATTTCGGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCTAACTTGGCTGAATCCAAAGGAGAAATAGACGATCTCTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAATAAAGAATTATTTTCATCATATACTCCAGCACCTACAGTTGAGAAGTTGTTTATGGCAAACTCCGTTGTTGCAAGGGTGGAAGGAACTGGCATAGTCCTATTAAAAATGACATTAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTTCAGTACTTACCAAGAATGGATTCAAATGTGTATTTGTTTATGATAAAGTAGTAATAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTT : AAAGGAAAAATCGAACTTTAA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  M  P  Q  K  I  K  E  K  K  Q  S  I  C  P  K  S  N  P  P  K  N  K  F  N  E  N  C  F  N  C  G  K  H  G  H  R  A  T  E  F  R  S  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  I  D  D  L  C  A  M  L  L  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  P  T  V  E  K  L  F  M  A  N  S  V  V  A  R  V  E  G  T  G  I  V  L  L  K  M  T  L  G  K  V  V  T  L  N  K  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  S  V  L  T  K  N  G  F  K  C  V  F  V  Y  D  K  V  V  I  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S   : *  R  K  N  R  T  L  </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  M  W  *  F  S  N  I  W  S  K  F  C  *  R  R  C  H  K  K  L  K  K  R  N  K  A  Y  V  Q  K  A  I  L  L  R  I  N  S  M  K  T  A  S  T  V  V  N  M  V  I  G  L  L  N  F  G  V  L  R  R  T  R  K  R  R  I  K  L  T  W  L  N  P  K  E  K  *  T  I  S  V  Q  C  F  *  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  I  K  N  Y  F  H  H  I  L  Q  H  L  Q  L  R  S  C  L  W  Q  T  P  L  L  Q  G  W  K  E  L  A  *  S  Y  *  K  *  H  *  A  R  W  *  L  *  I  R  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  Y  L  P  R  M  D  S  N  V  Y  L  F  M  I  K  *  *  *  A  R  M  I  C  M  *  E  K  A  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  :  K  G  K  I  E  L  * </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  C  G  N  S  A  I  S  G  V  N  F  V  E  E  D  A  T  K  N  *  R  K  E  T  K  H  M  S  K  K  Q  S  S  *  E  *  I  Q  *  K  L  L  Q  L  W  *  T  W  S  *  G  Y  *  I  S  E  S  *  E  G  Q  E  K  E  G  S  S  *  L  G  *  I  Q  R  R  N  R  R  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  *  R  I  I  F  I  I  Y  S  S  T  Y  S  *  E  V  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  H  S  P  I  K  N  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  F  S  T  Y  Q  E  W  I  Q  M  C  I  C  L  *  *  S  S  N  K  Q  E  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L :   K  E  K  S  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0101E05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125461" stop="124828"/>
                    <exon start="124329" stop="124328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKKMPQKIKEKKQSICPKSNPPKNKFNENCFNCGKHGHRATEFRSPKKDKKKKDQANLAESKGEIDDLCAMLLECNLVGNPREWWIDSGASCHVCANKELFSSYTPAPTVEKLFMANSVVARVEGTGIVLLKMTLGKVVTLNKVSYVPELRKNLVSISVLTKNGFKCVFVYDKVVISKNDMYVGKGYLSDDLFKLNVIAVDMNKDFASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="126427" PGL_stop="125548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126427" e_stop="125732"/>
            <exon e_start="125659" e_stop="125548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.936" e_score="0.902"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="126427" e_stop="125732" e_length="696"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.936">
            <gDNA_intron_boundary i_start="125731" i_stop="125660" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="125659" e_stop="125548" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126427" stop="125732"/>
              <exon start="125659" stop="125563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126215" stop="125732"/>
              <exon start="125659" stop="125548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAATTTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCACATACTTAAGTTATCTTCCATTTGTGACAGAAATAAAAATAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAGTAAGTGTTGCAACAACATCGGTTGCACGTAATCGTTCAAATGCTGCCTTAGCACCGGCTTAGAAACCTGCAAAGTTTTCTTGAGTCGACTTTAAGAAATGACAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGATCCTGTTATGTCAGATGAGACTCCGTCAAATGAACGATTCTTGGTAACAGAAGCATGGACAGACTCAGATTTTTTGTGTAAAATTATATTCTGAGTGGCCTGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGACGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTAGAAGATGATAGACAGTAAGACCATCGTCACCCAAGTTCAAGAACTACAGGTCATAATCCATGATTTCTTTGCTGAAG : GATTGATTGTGAATGATGTCTTTCAAGTGGCAACAATTATTGAAAAGTTACCTCCATTATGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> *  N  L  Y  G  F  L  L  C  L  N  F  *  I  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  H  I  L  K  L  S  S  I  C  D  R  N  K  N  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  S  K  C  C  N  N  I  G  C  T  *  S  F  K  C  C  L  S  T  G  L  E  T  C  K  V  F  L  S  R  L  *  E  M  T  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  *  S  C  Y  V  R  *  D  S  V  K  *  T  I  L  G  N  R  S  M  D  R  L  R  F  F  V  *  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  V  K  T  S  K  E  L  W  M  L  *  K  R  S  T  K  Q  K  T  P  E  *  R  N  S  L  W  Q  N  F  W  T  R  R  *  *  T  V  R  P  S  S  P  K  F  K  N  Y  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  S  F  K  W  Q  Q  L  L  K  S  Y  L  H  Y  G  R  I  S  K  T  T  *  N  I  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  K  T  F  M  V  F  Y  S  A  *  I  F  K  F  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  Y  *  Y  F  T  Y  L  S  Y  L  P  F  V  T  E  I  K  I  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  V  S  V  A  T  T  S  V  A  R  N  R  S  N  A  A  L  A  P  A  *  K  P  A  K  F  S  *  V  D  F  K  K  *  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  D  P  V  M  S  D  E  T  P  S  N  E  R  F  L  V  T  E  A  W  T  D  S  D  F  L  C  K  I  I  F  *  V  A  C  K  M  I  C  T  M  C  T  A  M  S  K  P  Q  K  N  S  G  C  F  R  K  E  V  Q  N  R  R  R  R  N  E  E  I  H  C  G  K  I  S  G  L  E  D  D  R  Q  *  D  H  R  H  P  S  S  R  T  T  G  H  N  P  *  F  L  C  *  R :   I  D  C  E  *  C  L  S  S  G  N  N  Y  *  K  V  T  S  I  M  E  G  F  Q  K  L  L  K  T  *  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   K  P  L  W  F  S  T  L  L  E  F  L  N  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  I  S  I  S  H  T  *  V  I  F  H  L  *  Q  K  *  K  *  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  *  V  L  Q  Q  H  R  L  H  V  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  N  D  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  M  R  M  I  L  L  C  Q  M  R  L  R  Q  M  N  D  S  W  *  Q  K  H  G  Q  T  Q  I  F  C  V  K  L  Y  S  E  W  P  A  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  L  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  *  K  M  I  D  S  K  T  I  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  F  F  A  E   : G  L  I  V  N  D  V  F  Q  V  A  T  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0101E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 342 chains have been computed
$ 
$ memory statistics:
$ 543472 bytes spliced alignments in total
$ 52 spliced alignments have been stored
$ 10451 bytes was the average size of a spliced alignment
$ 27736 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1540 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 479 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-13 01:20:34
-->
