<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:26:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565325" ref_strand="+" ref_description="SGN-U565325 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157327420|emb|CAO15233.1| (e_value=0) unnamed; (*ATH) AT1G59820.1 (e_value=0)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Mus musculus (SP:P70704), {Bos taurus} SP:Q29449; contains InterPro accession IPR005834: Haloacid dehalogenas... ; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=0) Putative phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3; ">
      <seq>gagttagcgctagtaattgatgggaaggtgttaatgtatgccttagaccctaatcttcgtgtaatgttgttgaacttgagcttgaattgcagtgcagtggtttgctgtcgtgtttctcctttacagaaagctcaggtaaccagcttggttaggaagggggctcagagaattacacttagtatcggtgatggtgctaatgacgtgagtatgattcaagctgctcatgttggtgttggaataagtggacaggagggaatgcaagcagtgatgtctagtgattttgcaatagctcagttccgctttctcactgatttattgcttgtccatggacgctggtcatatcttagaatatgcaaggtggtgacatatttcttttacaagaatctgatgtttacactcactcagttttggtttaccttccgcactggattctctggtcaaaggttctatgatgattggttccagtctctctacaatgtgatcttcacagcgcttcctgttattattcttgggctttttgagaaggatgtcagtgcatctctctcgaagaaatatcctgagttatacaaagaaggaattagaaatacattcttcaaatggagagttgtggctacctgggctttttttgcagtatatcaatcattaatcttgtataattttgtaatccattcgagtacgaagggcatgaattcatctggcaagatgtttggcctatgggatgtcagtacaatggcctacacctgtgttgttgtaactgtcaatttacgtctccttatgatgtgcaacacaattacaagatggcatcacattagcgttggagggagcatattattatggttcatttttgtatttatctactcgggtatccacttgcacaaagaacaggagggtatctatttagtcatcattgttctgataagcacattatacttctaccttgcgctgcttctcgtaccagttgctgcactttttgttgacttcctatatcagggggtacaaagatggttttccccatatgattaccagattgttcaggaaattcacaagcacgaaatcgacaacagcaggattggtttattagagatccgtaacgagctttctccagatgaagaaaggagatacgccataatgcaacttcctggacagagatcaaaacatactggttttgcttttgattcacccggttatgagtcatttttcgcatctcaggctggcgtgttggcacctcagaaggcgtgggacgttgctcggagagcaagcatgatgaaatcacgaccaaaggtacctaaaaagagctgagttccctaaaattttgtacaaattttcttctttaacctttcttctctcctatacagcttttaacagctacgtagaattatttcactctcattcttcgtaccgtttcgagttaattctacagttacatacatatatatatatatagtctctagttgtgtttagtgagattgtagtaaaaataactgagaagaaaacaataatgtacattatttaatgtaaccatcccatacacacttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="-" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7522" stop="3687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7223" g_stop="7089" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7088" i_stop="6634" i_length="455">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6633" g_stop="6412" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="357" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6411" i_stop="6331" i_length="81">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6330" g_stop="6163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="525" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6162" i_stop="6050" i_length="113">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6049" g_stop="5690" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="885" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5689" i_stop="5611" i_length="79">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5610" g_stop="5504" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="992" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5503" i_stop="4533" i_length="971">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.287" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4532" g_stop="3987" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="993" r_stop="1538" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="-" ref_id="SGN-U565325" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7223" e_stop="7089"/>
          <exon e_start="6633" e_stop="6412"/>
          <exon e_start="6330" e_stop="6163"/>
          <exon e_start="6049" e_stop="5690"/>
          <exon e_start="5610" e_stop="5504"/>
          <exon e_start="4532" e_stop="3987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAGGTGCGGTCCTAGGCCACCTTGGAACTTGTCTAACCGGCTTGTAGTTTCTTCACGTCAATACATGTTTTTAACTACAAACATGGATGGAGTCACCAATTTTAATCTGTCCCTTTCATCAATTGGTAGCATTCTTAGTTCGTCTGTCACATCTGCCTCGCAGCGTAAAATTTTACACATATTATAATATGTTACATCAAATCTGTTCCTTATCTCGCTGTATCACTTTGTAATAACATTAGCATATATGTATGTCTTGAAATGCTCTTTCGGGGTTCACATTTCATTATCAACAATTTTGGTTTCTTCAAGAGTGTCAGCGTTACAGTTTAGAGTTCTGGTGATATTCTTGGGAGTTGCAAATAAAAATACTCTTATGTTTGTGAAGTTAGGATGAGCTTTTTGATTGTCAAAACTTGTAGGCAGAACATATTTAGCAACTTCTCGATTGCTTTCAGGTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAGGTTTACCTTCATCCGGTCTGCTCTTTGCAAACTTTTATGGTCTGTACGGGTGGTTATGTGATCTGGAAGTTTTATGTGCAGGTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAGGTATCTGATTTCTTTTCATTTTTTTTTAGTTTTAGGGATGTATGACAGTGATGATTGTTTCTCTAACTACGATGCTGTTTCTTGTTGTTTATACACATTTATTGTGCATTTAGGATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAATGGAGAGTTGTGGCTACCTGGGCTTTTTTTGCAGTATATCAATCATTAATCTTGTATAATTTTGTAATCCATTCGAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCAATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTAGCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATCTACTCGGGTATCCACTTGCACAAAGAACAGGTGAGTCTCCGCACAAGTTTTGGTATTGCTTCCTAAGATCAATTCACTTTCTAATGTGGTTGGTTTGTATTCATCACAGGAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCTCGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGGGTAAGTCTCTGGAGTAAATTTTCTACTTCTTGGAATTAATATCATGTATTACATTGCCGCATAGCATATTTTGCTAGATTGTTCTTTCAATTTAAACTCTCTTCCAAATTCACAAATAGGCTGCCTCTCAAGGATATATCACTGTCGAAATAAAACCGTGAATGAAAATGTAAATTCACAATGTACTGACTGCCGAGATATCTGAAAGCAATTGCATTCCCTACAGGAAAATGTGTCCCCATATAACTAATGCCAGCACATTTGCGGAAAATCTTGTTCCACGAGTCATCTTTATGTCTTAACGACTTTATTTTCATTTCACATGAAATATCATTTGTACGACCAATCTTTATTATCTCTTCTCTTGCATTGTTATGACTCAAGGGTTGTCTCTCACTCTGTTTTACTGATTATGATTCTATAAAAGCTGTGCACCAGAACTTCTTGACCTTCATATAGTTTTTAAGGAACGAGGAACAGATGTGAGTCAACTGAGATATTATTTTGTCTCACTCGCATTGTCAATATAGATCTATTTTTTGCTGTTTGTTCTTTCTATGCTGCACAAAGAACGATTCAGGATTTTAAATTTTATGGGTTCAAACTTACTAGTATGTTCTTAAAATTATGGGTTGGACAATATACTTGTTGCAATTGTAGTCAATTTTCACTCAGAAATTTATGCTTGGGTTAAAACGAATACTAGGTTCAGATGGACCTATTGCTTGAACACTAACGCTGCAAGTCCATAGGCAGCACATCCTGCTTGATACAGTTAAAATAACCTTTTCGGTTCTGATTTTTCTTAAGGACACGAGTAGTCGAACTCCACCTACATGGTGGATGTTTGGGAACTCACCTGGTGAACTTCATATTGACAAATTTCACTTTTCTTTTCCTTTCTTCTGGTGATTTACTCTTGCTTCGATAAAATTACTCGCGTTCCTAAGTATCTAGTCTCTTCATTTCAGGGTACAAAGATGGTTTTCCCCATATGATTACCAGATTGTTCAGGAAATTCACAAGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAGAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAATCACGACCAAAGGTACCTAAAAAGAGCTGAGTTCCCTAAAATTTTGTACAAATTTTCTTCTTTAACCTTTCTTCTCTCCTATACAGCTTTTAACAGCTACGTAGAATTATTTCACTCTCATTCTTCGTACCGTTTCGAGTTAATTCTACAGTTACATACATATATATATATATAGTCTCTAGTTGTGTTTAGTGAGATTGTAGTAAAAATAACTGAGAAGAAAACAATAATGTACATTATTTAATGTAACCATCCCATACACACTTGCC</genome_strand>
        <mrna_strand>GAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAG.................................................................................GTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAG.................................................................................................................GATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAATGGAGAGTTGTGGCTACCTGGGCTTTTTTTGCAGTATATCAATCATTAATCTTGTATAATTTTGTAATCCATTCGAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCAATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTAGCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATCTACTCGGGTATCCACTTGCACAAAGAACAG...............................................................................GAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCTCGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAAAGATGGTTTTCCCCATATGATTACCAGATTGTTCAGGAAATTCACAAGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAGAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAATCACGACCAAAGGTACCTAAAAAGAGCTGAGTTCCCTAAAATTTTGTACAAATTTTCTTCTTTAACCTTTCTTCTCTCCTATACAGCTTTTAACAGCTACGTAGAATTATTTCACTCTCATTCTTCGTACCGTTTCGAGTTAATTCTACAGTTACATACATATATATATATATAGTCTCTAGTTGTGTTTAGTGAGATTGTAGTAAAAATAACTGAGAAGAAAACAATAATGTACATTATTTAATGTAACCATCCCATACACACTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586936" ref_strand="+" ref_description="SGN-U586936 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15218927|ref|NP_176191.1| (e_value=1e-101) haloacid dehalogenase-like hydrolase family [Arabidopsis thaliana]; (*ATH) AT1G59820.1 (e_value=8e-104)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Mus musculus (SP:P70704), {Bos taurus} SP:Q29449; contains InterPro accession IPR005834: Haloacid dehalogenas... ; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=7e-103) Putative phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3; ">
      <seq>gagttagcgctagtaattgatgggaaggtgttaatgtatgccttagaccctaatcttcgtgtaatgttgttgaacttgagcttgaattgcagtgcagtggtttgctgtcgtgtttctcctttacagaaagctcaggtaaccagcttggttaggaagggggctcagagaattacacttagtatcggtgatggtgctaatgacgtgagtatgattcaagctgctcatgttggtgttggaataagtggacaggagggaatgcaagcagtgatgtctagtgattttgcaatagctcagttccgctttctcactgatttattgcttgtccatggacgctggtcatatcttagaatatgcaaggtggtgacatatttcttttacaagaatctgatgtttacactcactcagttttggtttaccttccgcactggattctctggtcaaaggttctatgatgattggttccagtctctctacaatgtgatcttcacagcgcttcctgttattattcttgggctttttgagaaggatgtcagtgcatctctctcgaagaaatatcctgagttatacaaagaaggaattagaaatacattcttcaaatagagatccgtaacgagctttctccagatgaagaaaggagatacgccataatgcaactttcctggacagagatcaaaacatactggttttgcttttgattcacccggttatgagtcatttttcgcatctcaggctggcgtgttggcacctcaaaaggcgtgggacgttgctcggagagcaagcatgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="-" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7522" stop="3955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7223" g_stop="7089" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7088" i_stop="6634" i_length="455">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6633" g_stop="6412" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="357" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6411" i_stop="6331" i_length="81">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6330" g_stop="6163" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="525" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6162" i_stop="6050" i_length="113">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6049" g_stop="5978" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="597" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5977" i_stop="4447" i_length="1531">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4446" g_stop="4255" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="790" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="-" ref_id="SGN-U586936" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7223" e_stop="7089"/>
          <exon e_start="6633" e_stop="6412"/>
          <exon e_start="6330" e_stop="6163"/>
          <exon e_start="6049" e_stop="5978"/>
          <exon e_start="4446" e_stop="4255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAGGTGCGGTCCTAGGCCACCTTGGAACTTGTCTAACCGGCTTGTAGTTTCTTCACGTCAATACATGTTTTTAACTACAAACATGGATGGAGTCACCAATTTTAATCTGTCCCTTTCATCAATTGGTAGCATTCTTAGTTCGTCTGTCACATCTGCCTCGCAGCGTAAAATTTTACACATATTATAATATGTTACATCAAATCTGTTCCTTATCTCGCTGTATCACTTTGTAATAACATTAGCATATATGTATGTCTTGAAATGCTCTTTCGGGGTTCACATTTCATTATCAACAATTTTGGTTTCTTCAAGAGTGTCAGCGTTACAGTTTAGAGTTCTGGTGATATTCTTGGGAGTTGCAAATAAAAATACTCTTATGTTTGTGAAGTTAGGATGAGCTTTTTGATTGTCAAAACTTGTAGGCAGAACATATTTAGCAACTTCTCGATTGCTTTCAGGTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAGGTTTACCTTCATCCGGTCTGCTCTTTGCAAACTTTTATGGTCTGTACGGGTGGTTATGTGATCTGGAAGTTTTATGTGCAGGTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAGGTATCTGATTTCTTTTCATTTTTTTTTAGTTTTAGGGATGTATGACAGTGATGATTGTTTCTCTAACTACGATGCTGTTTCTTGTTGTTTATACACATTTATTGTGCATTTAGGATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAATGGAGAGTTGTGGCTACCTGGGCTTTTTTTGCAGTATATCAATCATTAATCTTGTATAATTTTGTAATCCATTCGAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCAATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTAGCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATCTACTCGGGTATCCACTTGCACAAAGAACAGGTGAGTCTCCGCACAAGTTTTGGTATTGCTTCCTAAGATCAATTCACTTTCTAATGTGGTTGGTTTGTATTCATCACAGGAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCTCGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGGGTAAGTCTCTGGAGTAAATTTTCTACTTCTTGGAATTAATATCATGTATTACATTGCCGCATAGCATATTTTGCTAGATTGTTCTTTCAATTTAAACTCTCTTCCAAATTCACAAATAGGCTGCCTCTCAAGGATATATCACTGTCGAAATAAAACCGTGAATGAAAATGTAAATTCACAATGTACTGACTGCCGAGATATCTGAAAGCAATTGCATTCCCTACAGGAAAATGTGTCCCCATATAACTAATGCCAGCACATTTGCGGAAAATCTTGTTCCACGAGTCATCTTTATGTCTTAACGACTTTATTTTCATTTCACATGAAATATCATTTGTACGACCAATCTTTATTATCTCTTCTCTTGCATTGTTATGACTCAAGGGTTGTCTCTCACTCTGTTTTACTGATTATGATTCTATAAAAGCTGTGCACCAGAACTTCTTGACCTTCATATAGTTTTTAAGGAACGAGGAACAGATGTGAGTCAACTGAGATATTATTTTGTCTCACTCGCATTGTCAATATAGATCTATTTTTTGCTGTTTGTTCTTTCTATGCTGCACAAAGAACGATTCAGGATTTTAAATTTTATGGGTTCAAACTTACTAGTATGTTCTTAAAATTATGGGTTGGACAATATACTTGTTGCAATTGTAGTCAATTTTCACTCAGAAATTTATGCTTGGGTTAAAACGAATACTAGGTTCAGATGGACCTATTGCTTGAACACTAACGCTGCAAGTCCATAGGCAGCACATCCTGCTTGATACAGTTAAAATAACCTTTTCGGTTCTGATTTTTCTTAAGGACACGAGTAGTCGAACTCCACCTACATGGTGGATGTTTGGGAACTCACCTGGTGAACTTCATATTGACAAATTTCACTTTTCTTTTCCTTTCTTCTGGTGATTTACTCTTGCTTCGATAAAATTACTCGCGTTCCTAAGTATCTAGTCTCTTCATTTCAGGGTACAAAGATGGTTTTCCCCATATGATTACCAGATTGTTCAGGAAATTCACAAGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAAC-TTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAGAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAAT</genome_strand>
        <mrna_strand>GAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAG.................................................................................GTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAG.................................................................................................................GATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAAAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598693" ref_strand="+" ref_description="SGN-U598693 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327420|emb|CAO15233.1| (e_value=9e-25) unnamed; (*ATH) AT1G59820.1 (e_value=9e-26)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Mus musculus (SP:P70704), {Bos taurus} SP:Q29449; contains InterPro accession IPR005834: Haloacid dehalogenas... ; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=9e-25) Putative phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3; ">
      <seq>aaaggatcttgtatcgattggatgcactgctatagaagacaagcttcaggaaggtgtacctgcctgcataaagactctttcaagggctggaattaagatttgggtgcttactggggataaactggaaacaggactaaacattgcttatgcatgcaatatgatcaataacagcatgaaacaattcgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="-" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8026" stop="7154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7726" g_stop="7578" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7577" i_stop="7493" i_length="85">
            <donor d_prob="0.580" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7492" g_stop="7454" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="188" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="-" ref_id="SGN-U598693" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7726" e_stop="7578"/>
          <exon e_start="7492" e_stop="7454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATCTTGTATTGATTGGATGCACTGCTATAGAAGACAAGCTTCAGGAAGGTGTACCTGCCTGCATAGAGACTCTTTCAAGGGCTGGAATTAAGATTTGGGTGCTTACTGGGGATAAACTGGAAACAGCAATAAACATTGCTTATGGTTGGTATAAGTAATAGGCAGTCTACAATTTGTTGTTATTTATTTTCCATGTGATATCTTGTCCTGATTCTCTTGTGTATTGCAGCATGCAATTTGATCAATAACAGCATGAAACAATTTGTTA</genome_strand>
        <mrna_strand>AAAGGATCTTGTATCGATTGGATGCACTGCTATAGAAGACAAGCTTCAGGAAGGTGTACCTGCCTGCATAAAGACTCTTTCAAGGGCTGGAATTAAGATTTGGGTGCTTACTGGGGATAAACTGGAAACAGGACTAAACATTGCTTATG.....................................................................................CATGCAATATGATCAATAACAGCATGAAACAATTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597798" ref_strand="+" ref_description="SGN-U597798 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aatgtacatatagaagtgaatcaatatatactagaagtgattaatataattcaaatcaaatgaacaaaaataatccttattaggcctattaatatgtgtacttcacacgtaaactatgtaaattacaaaataaaaattatttttatattgttacctgattttaaaatttctaactctttgaatacataggaataattagaagaaaattatgattttatagtaaattatatataaacgtatggaaaaatattaaaataaactttaaaaatattttcgattaaactatgtaggtattataggaagaagatggcaagggtcttgctttactttgaccaaaaaataaaaattagcattgtatttagctaagaattatactagtcatatttgaaataacactaataagaataattttgtttctattgtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="+" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="19661" stop="20687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19961" g_stop="20387" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="+" ref_id="SGN-U597798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19961" e_stop="20387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTACATATAGAAGTGAATCAATATATACTAGAAGTGATTAATATAATTCAAATCAAATGAACAAAAATAATCCTTATTAGGCCTATTAATATGTGTACTTCACACGTAAACTATGTAAATTACAAAATAAAAATTATTTTTATATTGTTACCTGATTTTAAAATTTCTAACTCTTTGAATACATAGGAATAATTAGAAGAAAATTATGATTTTATAGTAAATTATATATAAACGTATGGAAAAATATTAAAATAAACTTTAAAAATATTTTCGATTAAACTATGTAGGTATTATAGGAAGAAGATGGCAAGGGTCTTGCTTTACTTTGACCAAAAAATAAAAATTAGCATTGTATTTAGCTAAGAATTATACTAGTCATATTTGAAATAACACTAATAAGAATAATTTTGTTTCTATTGTGTAT</genome_strand>
        <mrna_strand>AATGTACATATAGAAGTGAATCAATATATACTAGAAGTGATTAATATAATTCAAATCAAATGAACAAAAATAATCCTTATTAGGCCTATTAATATGTGTACTTCACACGTAAACTATGTAAATTACAAAATAAAAATTATTTTTATATTGTTACCTGATTTTAAAATTTCTAACTCTTTGAATACATAGGAATAATTAGAAGAAAATTATGATTTTATAGTAAATTATATATAAACGTATGGAAAAATATTAAAATAAACTTTAAAAATATTTTCGATTAAACTATGTAGGTATTATAGGAAGAAGATGGCAAGGGTCTTGCTTTACTTTGACCAAAAAATAAAAATTAGCATTGTATTTAGCTAAGAATTATACTAGTCATATTTGAAATAACACTAATAAGAATAATTTTGTTTCTATTGTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583136" ref_strand="+" ref_description="SGN-U583136 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|33339703|gb|AAQ14331.1|AF283506_1 (e_value=7e-76) MYC1; (*ATH) AT1G59640.1 (e_value=1e-66) | Symbol: None | basic helix-loop-helix (bHLH) family protein | chr1:21912842-21914866 REVERSE | Aliases: T30E16.21, T30E16_21; (*SWP) sp|Q93VJ4|BEE2_ARATH (e_value=2e-29) Protein BEE 2 OS=Arabidopsis thaliana GN=BEE2; ">
      <seq>ttttcaactgcacaaagagtctccctcttcttcttcttctctctctctaatggtggtggtcgctattatacgccagtaggtacagtacgcaccatcaacttccatttttgtacacacagagcttctatatatatcttctctcattcacatttcctacgtgaatgcctaataattcaccattcgcttcggatttggatcgggtattgaaatggatccacaagcttccatgatgaaccacgccggaggatttcagtctccgccgtttaatttatctgagatctggcagtttccgatcaatgcaggtgaaggtgagacgccgtatagttttccgttgtctacggcggctgcgccgcagaatgtgagtgatgatgttcggaataatgatcctatggttctagaccggagaactaataattacagcggtggcggcggtggtggtgcagctaggaagcgaaacgaggatgatgaatcagctaaaggagtttccactagcggcaatggcttgactgaatctgctagtaagcggatgaaggttacaagatcaaatgagaattgcgaagctagaggtgacggggaagggaattcagtgaaatctgcagaacaacctgcaaagcctgctgaaccgccaaaagattacattcacgtgcgggcaaggaggggtcaagctactgatagtcacagtctagcagaaagagctaggagagagaagataagtgagaggatgaaagtcctccaagatatagtccctggttgtaataaggttattggcaaagctcttgttcttgatgagataataaattatattcaatcattacaacaccaggttgagttcttatcaatgaagcttgaagcagttaattcaaaaatgccaagcatagagggatatccatctaaagatttcggacagcagccatttgatacaaatgctatggcattcagttcacaagctacaagggaatataccaggggaacatcaccagattggttgcatatgcagcttggtggaggctttgaaagaacaacataaatttgcatcagaaggttaataataagttcattggaaggttccctcttttggtgattgccagaacacaagaccagtccaggtttctttgaaagcttatatccagtatctttatcaagcacaaaattgttgaatgtctagtacagctgataaacagacaaccacgttttccacttcgttcgtctatcgtgttatacttgtggcaggcaccatataagtattcttgtgaaagtgcttgtttaataataggtaaagaattgggtgtattagtatgctgaagttgtagctaaataaagtggtctgtcccgtccttaaaaccattggtagatagcatcaagtcttgtaaatagggaaaatcagtgtttctgtgtttcgattgttcaacaagttaagacaatatactttataccaaatgaatgatgcctgcaagtttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="-" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27135" stop="21367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26835" g_stop="26331" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26330" i_stop="25507" i_length="824">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25506" g_stop="25318" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="694" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25317" i_stop="25184" i_length="134">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25183" g_stop="25118" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="760" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25117" i_stop="23332" i_length="1786">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23331" g_stop="23263" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="829" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23262" i_stop="23146" i_length="117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23145" g_stop="23077" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="898" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23076" i_stop="22230" i_length="847">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22229" g_stop="21666" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="1462" r_length="564" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="-" ref_id="SGN-U583136" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26835" e_stop="26331"/>
          <exon e_start="25506" e_stop="25318"/>
          <exon e_start="25183" e_stop="25118"/>
          <exon e_start="23331" e_stop="23263"/>
          <exon e_start="23145" e_stop="23077"/>
          <exon e_start="22229" e_stop="21666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACTGCACAAAGAGTCTCCCTCTTCTTCTTCTTCTCTCTCTCTAATGGTGGTGGTCGCTATTATACGCCAGTAGGTACAGTACGCACCATCAACTTCCATTTTTGTACACACAGAGCTTCTATATATATCTTCTCTCATTCACATTTCCTACGTGAATGCCTAATAATTCACCATTCGCTTCGGATTTGGATCGGGTATTGAAATGGATCCACAAGCTTCCATGATGAACCACGCCGGAGGATTTCAGTCTCCGCCGTTTAATTTATCTGAGATCTGGCAGTTTCCGATCAATGCAGGTGAAGGTGAGACGCCGTATAGTTTTCCGTTGTCTACGGCGGCTGCGCCGCAGAATGTGAGTGATGATGTTCGGAATAATGATCCTATGGTTCTAGACCGGAGAACTAATAATTACAGCGGTGGCGGCGGTGGTGGTGCAGCTAGGAAGCGAAACGAGGATGATGAATCAGCTAAAGGAGTTTCCACTAGCGGCAATGGCTTGGTATTCTATCTAGTTCACCTCATTTTGCTTCTGTTTAGCTGTATTAACTGTCTAAATGTTAGTTAATGTACTGTAGCTCGATATTCTAGCTAATTTACCTCAATTTTCTACTAATTTAGCTGTATTAACTGCCTAAATGTTAGTTAGTTATATTATAGCTCGGTATTCTATCTAATATACCTCAATTTTCTAATAATTTGCCGTATTAGCTGCCTTAATGCTAGTGAAATCTATTATAGTTTGGTATTCTATCGAATTACCTCATTTTCTTACTAAATTAGCTGTAGAAACTGCTGTTGATGTAAGTTGAATTCTAATGTACAGTTTGTTGATATTTATTTGCCATGAAGTCATGCTAGGCAATTTTATTGCTGAGCGTATGTTATTTTCCTGATTGAGTAGCTAGCTCTATAAGTATAGTATAAAACAAAACTGAAGATAACTTGAGAAGGCGGGGTAGAGTACGTTGATTGATTGATTCTTCTTTCGTTGTTGTTGGTTTGTTCTCATTGTTCTACCTGATTCTTGTTTACGAAGTACTTTCGAGGGGATTAGACATTTGATTATTCTCCAGCTTTAGAGAACCGGAATCTTCATTCGAAGTACAAAGTATTTGTCAGTATTGGGATGAAATGGGCTCGAACAGAATGGTGTATGTGGAGGATCTGTTTGCAGATTCTAACTAGTGTGGGATTGTAATTAATTGATTGATTGGATGTAGAATCAAATATCTCATATTGAATCGTGCATTGTGAGAAATACTGATTATTTTCTTCTGCCTTGTTAATTTTGGACTTCTAAGATTAGTTTGGTGATTTGAGCAGACTGAATCTGCTAGTAAGCGGATGAAGGTTACAAGATCAAATGAGAATTGCGAAGCTAGAGGTGACGGGGAAGGGAATTCAGTGAAATCTGCAGAACAACCTGCAAAGCCTGCTGAACCGCCAAAAGATTACATTCACGTGCGGGCAAGGAGGGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGAGTAATTTGGCTAATTTATTCTCTTCTAAGTCAAGTGTCAATTTTAGACTGTTGTTGGAACAGCTTTGACATGATATGAAATGCTGGTAGTAGATGAAATATATGGTCTTGCTGATTGAACTTTCTGTTTTGCAGGCTAGGAGAGAGAAGATAAGTGAGAGGATGAAAGTCCTCCAAGATATAGTCCCTGGTTGTAATAAGGTGCGCTATTGCACCTTCAGTTTTCTTTTCACTGTTTAAATCCGAAGTGCTTGATTTTCATCTGCTGTTTTTTCTGTTTTCTAATGGTACTTGATTAAATACTTTCTGTCTCTGATATTAAAACTTTTGGAGTTCCCACCTTTAGGCGAGATGACATAGTTTTTAGGTTCACTAGCAAAGCCTGCTCCCAATAGTGAACTTCAGACAAAGCCTCACAATTTTTTCTTTCAGTTTATGTGGAAGTACTAATTGAGTGAAGGATAGAGTCCAACTTCCAACAGAAAATGTTTCAAGTACACCTATTCTTCTTGAGAAGATTTGGCTATAGCATTTTTGTGATGAATTACTTGTCAAGCAAACCTCTTGAACCATGGTATTTTATTTGACAAGTAAAGCCAACCCATGTAATTTAGGTGGAACTTATATTTTATTTTGTCGTTGATAAGTAAAGCACTTGTCCCATGTTATTATTTTGGTGGAACACTGGTATTTGTATTTGTTGCCTTTCTGGTTGTCGTATTCAAATAAGAACCTGTCTGATCCAAAAATTATCAATTTTTGTTAATTTCTTGAAACTTGACCTTGTTTGAATTTTGAACTAATTTCTTTAACAAAAGCACATGGACTTCTTTGTATATTCCATGCCCACACTCTTTAGTTGCTTACATATCAGATCATGCTCCTCTCATTTATGATAACAGTTTAAGTGTAAGAATGTATAAACTGAGCAATCTACTCAAAACTATATAGAATTGAGAGGATGCAATTGGAATTAGAAAGGAGGGGGAATAGATTAAAAAGAAAGAAAGGATTAAGTATTAATAGAAAATAATGAAAACAACTTATCATTCAGTTACAAACTATAATCCAAGTGAGACGGGAATTCATTCTCATACATGGATTCTTACGAGGGAAGAACTCAAGAGGGTCCAATGAGGAGGTTCGGACAATTCCATAAACTCACAAGGAGTATCTTCACATGATCAAATACTAATGAACCAAAACCCTAAAGATAAACTATTTATACTAACGGTTACATGAGATACTACTATTTAGCTTAATGTCCTTTAGCTACATCCTAATTGAAAAGCTCAGTCAGCCCAATTTGATATTTTGTGCTTCTTGACTCAAAGATCTTGATTGCTATATCCATGGCCTTGATGATGAGTCTGGCATTTTGGGGAGTTATCACATCACTGACCAAACAATCCATGACTAAAACAACAAATGTTCCTACTTATTAAAAAAATTAGACAAATGGTGTTCCTTTGGTTACAGTATCTAGAGTGAACCTAGAAATGTCTCAAAAGCAACTGGCTTTCGCCACATTAATGTAGTGGGAAGGTGGAAATTCAAGCTTCTTTGTTCATGATATACAACGCAAAAGGAGAAGAAGGCATAATGTTTGGAATGTTATTCCTCTTTGTTTCGTGTGGGTCATTTGGGAAGAGAAGAATAAGAGAGCTTTTGAAGGGGTCGAAATGAACTTTGCTCAACTGAAGAGTAATCTCTGATCCCTTGTTTTTTTTGGAATACCCACGTAGTTCTTGTTTGTTTAGAGGATTGAGTGTCTTCCGTAGAGAACCATATTTTGTAGATTTCTCCTCTTTGGTATATCACATATATACAGCCAAGTTGGCCTTGTTATTATCATAAAACTTTTACTTGATAAAAGAAAAAAGCTGCCAATGAAAAATATGATTGTAATAAATAAACATCTAAAGCTGAATTAATGTTTTTGGTTGAAATGAGATGGAGAAACTTAGTTTGATTGTTTTGGTTACAGGTTATTGGCAAAGCTCTTGTTCTTGATGAGATAATAAATTATATTCAATCATTACAACACCAGGTTGAGGTATGTTTCCCCCCTCCCCCAGGAAAACAAAAAAAGTGTATTAGCATCTGTTTTGTTTGCTGTTGGAGTGTTCTAATTGTGAGAATTTTGTGGTAATTTGTGGTCTTGATTCTGCAGTTCTTATCAATGAAGCTTGAAGCAGTTAATTCAAAAATGCCAAGCATAGAGGGATATCCATCTAAAGATGTAAGTTTTGTATGAAGTCAGTCCTGCAGTTCATTCTGTACTAGGACACATCAATGACTAATTGGTAGAGTGACCCACCTTGGTCTTGTGTATCCTTTCTTAAACTGCACCATACTTTTTTGTCGAAGCAACGTCAACTCAGTGCAGTCTCACCAACCTTCTTGCTTACTTGCATATAGGGGTGATTCTGTGTCTAATTTAACATCTGCCCTTTTTCAGCAAATGGGTGGATAAATATGTACCTGGCAACCTTGATTATAGTACTTAACAGGCCACCTTTTAGTTCTTGGGGGAACTGAGTTGATTGTGCTGCATTCAGCAAGCTATTCTTGTTTAATGTTTCGTCATTAGCACCTTGAAGTAATACTTGCTGGATAAACATCTTTCATTGCTACGATATATTTCTGAGACTTAGCTGAATATGTTTAGGACCGCTTTGAAGTTTATGGGCTAGCAAAAGTACTTACTCTGATACAAAGATTTGCGACCATGAACATTTTCTGATAAAATGACTGGTGGTGTACTCATTTCTTTGAATTTGGTCCTTTGTCCTGGATGTCTTTTATTTAAATCGCTTTACACACTTTATCCACGCGGGATTGCCAATTTGTGTGAATCAGAGAAAGCAGTGCATTGAATATTAGCTTCTGATAAAATAATAAGATGTAAAGAAAAACGGAGTCAATAATTGTAAAGACAACTAGGCAAGGGGAGTAGTTCTATTCTTTGAACTTATTATGGAAAATATTAGTGAGATAACACATCGATTTGTGCTTGGTGAAGTGTTTTCCTTCTCATATTTCAATTCTTACTCGAAACAAATGACGTATTGTTTTAATTTTTCTAGTTCGGACAGCAGCCATTTGATACAAATGCTATGGCATTCAGTTCACAAGCTACAAGGGAATATACCAGGGGAACATCACCAGATTGGTTGCATATGCAGCTTGGTGGAGGCTTTGAAAGAACAACATAAATTTGCATCAGAAGGTTAATAATAAGTTCATTGGAAGGTTCCCTCTTTTGGTGATTGCCAGAACACAAGACCAGTCCAGGTTTCTTTGAAAGCTTATATCCAGTATCTTTATCAAGCACAAAATTGTTGAATGTCTAGTACAGCTGATAAACAGACAACCACGTTTTCCACTTCGTTCGTCTATCGTGTTATACTTGTGGCAGGCACCATATAAGTATTCTTGTGAAAGTGCTTGTTTAATAATAGGTAAAGAATTGGGTGTATTAGTATGCTGAAGTTGTAGCTAAATAAAGTGGTCTGTCCCGTCCTTAAAACCATTGGTAGATAGCATCAAGTCTTGTAAATAGGGAAAATCAGTGTTTCTGTGTTTCGATTGTTCAACAAGTTAAGACAATATACTTTATACCAAATGAATGATGCCTGCAAGTTTTTGGA</genome_strand>
        <mrna_strand>TTTTCAACTGCACAAAGAGTCTCCCTCTTCTTCTTCTTCTCTCTCTCTAATGGTGGTGGTCGCTATTATACGCCAGTAGGTACAGTACGCACCATCAACTTCCATTTTTGTACACACAGAGCTTCTATATATATCTTCTCTCATTCACATTTCCTACGTGAATGCCTAATAATTCACCATTCGCTTCGGATTTGGATCGGGTATTGAAATGGATCCACAAGCTTCCATGATGAACCACGCCGGAGGATTTCAGTCTCCGCCGTTTAATTTATCTGAGATCTGGCAGTTTCCGATCAATGCAGGTGAAGGTGAGACGCCGTATAGTTTTCCGTTGTCTACGGCGGCTGCGCCGCAGAATGTGAGTGATGATGTTCGGAATAATGATCCTATGGTTCTAGACCGGAGAACTAATAATTACAGCGGTGGCGGCGGTGGTGGTGCAGCTAGGAAGCGAAACGAGGATGATGAATCAGCTAAAGGAGTTTCCACTAGCGGCAATGGCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAATCTGCTAGTAAGCGGATGAAGGTTACAAGATCAAATGAGAATTGCGAAGCTAGAGGTGACGGGGAAGGGAATTCAGTGAAATCTGCAGAACAACCTGCAAAGCCTGCTGAACCGCCAAAAGATTACATTCACGTGCGGGCAAGGAGGGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGA......................................................................................................................................GCTAGGAGAGAGAAGATAAGTGAGAGGATGAAAGTCCTCCAAGATATAGTCCCTGGTTGTAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGCAAAGCTCTTGTTCTTGATGAGATAATAAATTATATTCAATCATTACAACACCAGGTTGAG.....................................................................................................................TTCTTATCAATGAAGCTTGAAGCAGTTAATTCAAAAATGCCAAGCATAGAGGGATATCCATCTAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGACAGCAGCCATTTGATACAAATGCTATGGCATTCAGTTCACAAGCTACAAGGGAATATACCAGGGGAACATCACCAGATTGGTTGCATATGCAGCTTGGTGGAGGCTTTGAAAGAACAACATAAATTTGCATCAGAAGGTTAATAATAAGTTCATTGGAAGGTTCCCTCTTTTGGTGATTGCCAGAACACAAGACCAGTCCAGGTTTCTTTGAAAGCTTATATCCAGTATCTTTATCAAGCACAAAATTGTTGAATGTCTAGTACAGCTGATAAACAGACAACCACGTTTTCCACTTCGTTCGTCTATCGTGTTATACTTGTGGCAGGCACCATATAAGTATTCTTGTGAAAGTGCTTGTTTAATAATAGGTAAAGAATTGGGTGTATTAGTATGCTGAAGTTGTAGCTAAATAAAGTGGTCTGTCCCGTCCTTAAAACCATTGGTAGATAGCATCAAGTCTTGTAAATAGGGAAAATCAGTGTTTCTGTGTTTCGATTGTTCAACAAGTTAAGACAATATACTTTATACCAAATGAATGATGCCTGCAAGTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580755" ref_strand="+" ref_description="SGN-U580755 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147776685|emb|CAN65726.1| (e_value=2e-11) hypothetical; (*ATH) AT1G59650.1 (e_value=3e-12) | Symbol: None | expressed protein, ; supporting cDNA gi:6520232:dbj:AB028233.1: | chr1:21923410-21926588 FORWARD | Aliases: T30E16.22, T30E16_22; ">
      <seq>aggaagaaaaaaaattagttcttctttttcacctttattcttctctaaagatcagatttttattcatttttctgtatcaagattacatttttcttgatacccacaatttgtttccctgtttctgaaacacccttttcataatcttgttagtaggggtgggtgggtgggtagggagagatggggggttgtgtatcaagaccagatggttgtgctggaggtagattaggtggttcaaggagaaagagtaggaagagaagaaaagctgtaaagaaaagggtgtcttctcatgtatcagatcgatcagcagctgataaagttgataagtctttccctttggatcgttctttcaataatcccacttttaatggaagtactgaagaagcatggtttgattcttctgcaagatttgaatctgatggcagtgatgaagatttccagagtgttgctgatgatgtgctttcactcaatggctctgattgtgggcggactagtgttgcttcagcaacagatgtccaccatggggatgttgatgtcaatgcccaccacaggttatcctccgacctgctgaggcaaggagaactatcaacaagcaatcctgcttgtagctctgacagtggttcagctaaaacgtcaatcaacccaagcagtatgttgcgtccaaaagatgcagactcaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="+" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41512" stop="45125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41812" g_stop="42177" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42178" i_stop="44413" i_length="2236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44414" g_stop="44497" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="451" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44498" i_stop="44595" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44596" g_stop="44825" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="681" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="+" ref_id="SGN-U580755" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41812" e_stop="42177"/>
          <exon e_start="44414" e_stop="44497"/>
          <exon e_start="44596" e_stop="44825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAG-AAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTTGTTAGTAGGGGTGGGTGGGTGGGTAGGGAGAGATGGGGGGTTGTGTATCAAGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATGGTACTTTCTTGTTTTATTTTTCTTGTTTGTGTGTACATTTTTTGGTATTTTGTTAGTTTTCTTGTTCAATGTAATTGTGATTGTTGAAAGTTAGTCTCTTTGTTGGAGATTATCGGAATTGAGAAGAAAGTCAAGTTTTTGATAGAATAACTATTAGTTGAGTCATGAGTGAGCTTTTTGATTATTGAAAGTTACTTTCTTTGTTGAAGAAATTTGGATTCATGAAGAAAGTTTGAGTTTTTGATATGATAATGGTTATTTGAGTGAGCATTTGAGAAAATTTCAATGTAGTTCTGATTATTGAAAGTTACTTTCTTTGTTGAAAAAAATTGGAATCGAGAAGAAAGTCGAGTTTTTGATACGATAACTATTAGTTGAGTCATGAGTGAGGTTTGTGATTATTGAAAGTTACTTTCTTTGTTGAGGAAATTTGGATTCATGAAGAAAGTTTGAGTTTTTGATATAATAAGTTTAGTTGAGTGAGCATTTGAGAAAAAATCAATGTAATTGTGATTATTGAAAGTTACTTTCTCTGTTGAAGAAAATTGGAATCGAGAAGAAAATTGAGTTTTTTGATATAATAGCTGTTAGGTGTGTGAGTAATTTAGAAATCTAACACAATCAAATTTTTAATCTGCTAATGTTGGTGGAGAGTGAAACTAATCTGTGTTTTTGGAGTTTGATTTCTTGACTTGTTTTGGTTAAGTTGAATTGAAGGTTGGAGATATGGAGGTTGGTGGGGTGCATTTTTCTTTGGAGGTTTGGTTAGATGCTTTTTGAAGGAAAAAAAATCAACTTTTCTTTGGAGTAGCTCATTTTTGTTGTTGTTATTGTTTTTTATTAGTTGATATGCTTTCTTCACTGCCGTTTTTCACTTGAGTCACTTGTGGGATCACATGGGATGTGTTTTTGTTGTTGTATTTTCTTATATTGCTAAATAGGAGAGGGTGGAGTGGTTTGTTCCTAGGGAGAGCCTAAAGAAGTGGTTCAGTTGAAGAGAATGTGCTAATATGTTTTAATGGCGTAAAAGTAGCAGGTGATGCGCCGACACCGTTATAGAGAAGGAGGAGGAAGAGGGAAATGAAAAGGAACTGTTTTGGCAGTTTTTTTTTCTATGCTCTGCATCCATACAAATCGATTTATGTGTATGGTTTGGTACTCTAAATCGCAATGCACATTATATATTGCTGTATATAACAACTGGAAAGATGAGGAGGTGATGCCAAATTGTTGAGGAAGGCATTAGATTTTCTTCTTTGGATGAGATATAGCTATAACTCTCATTTACCTTTGGTATCTTAAATTGTCATGCACCTGAATGGAGCTGGCGATTTTCTTCAACAATTTGTTTCTTGAATGAAGTGAATTGGGATAATTACTCATTAGGAATTTTATATAGCTTATTCTAGGTTCATTAGTGTAGTCTTCTGGATTGAGTTTACTTTATGCCTACTGCCAAACATGGTTATGTGCTGTCTTTTTTGAAATTGTATACGGTAAATCCTACTCCCTCAAATTCTCCAACATTTTCCGTTACCACTTTGCTCCCTTGTGATTTAGACGCCCGCCCAACTTTGAGGTAGAGGGTCCTTACCAGTAGGCTATCCTTCACTTGACTACTCAGTTTTTTAATTTTGTCTTAAACCATAACATTGTTACATAATTGAGTTAACAAAACTTGGCTCCCTAAGAACTTTAATTTTTAAGTCACTTCTCTTCTTTTAGGTCGAATATCTAAATTAAACGCAGTAGTTTGAGTATAACATAAGGAATTGAATAGTAGCATATTCTTTGTGTCAAAAGAGACAATGTGATTAGTGGAAGTTAGAAATATACTGAGGTTATCTGTATGCTTGGGGGTAATTGTACCAGTTGAAGTCCCAAACAAAGACACATGTTGTTTTCTTATGATAAAAATTGATGGTTCGTTTTATCTATTTTATACAATGCTAAATAACCGGAAGTTGTTAATATCCTTGCAATGTTTCCACTTATCCTAAAATCCACAATGTTCCTTTGAAACTGGAACTAAGCAGGCGTCGTTTAGATCATGATGAATATCATCTATATCACATCTTCATTTACCTTCCAATCATTCCTGGGAGGGATACTTTTCATAGTTTAGCTTCATGTTATACTTCTGTCTGTCCAATCTAAAGCGGAATACTCTGTAGTGAATAAACCATTGGAACTAGCCTTTTCTAACATTTTGTGCTACTGTATAATGCAATAACAGGAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATGGTATGGTTTTTTCATTTCAGTTTATACATTCTAACTGCAGTTGGGAAAATGACATGCTGTGAATTTAAGAATAGAAATCTAATCACACTATTCTGCAGATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATG</genome_strand>
        <mrna_strand>AGGAAGAAAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTTGTTAGTAGGGGTGGGTGGGTGGGTAGGGAGAGATGGGGGGTTGTGTATCAAGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATG..................................................................................................ATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580121" ref_strand="+" ref_description="SGN-U580121 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|18406410|ref|NP_564750.1| (e_value=8e-157) expressed protein CW14 [Arabidopsis thaliana]; (*ATH) AT1G59650.1 (e_value=5e-159) | Symbol: None | expressed protein, ; supporting cDNA gi:6520232:dbj:AB028233.1: | chr1:21923410-21926588 FORWARD | Aliases: T30E16.22, T30E16_22; ">
      <seq>ggaaaaaaattagttcttctttttcacctttattcttctctaaagatcagatttttattcatttttctgtatcaagattacatttttcttgatacccacaatttgtttccctgtttctgaaacacccttttcataatcttgtgtatcaagaccagatggttgtgctggaggtagattaggtggttcaaggagaaagagtaggaagagaagaaaagctgtaaagaaaagggtgtcttctcatgtatcagatcgatcagcagctgataaagttgataagtctttccctttggatcgttctttcaataatcccacttttaatggaagtactgaagaagcatggtttgattcttctgcaagatttgaatctgatggcagtgatgaagatttccagagtgttgctgatgatgtgctttcactcaatggctctgattgtgggcggactagtgttgcttcagcaacagatgtccaccatggggatgttgatgtcaatgcccaccacaggttatcctccgacctgctgaggcaaggagaactatcaacaagcaatcctgcttgtagctctgacagtggttcagctaaaacgtcaatcaacccaagcagtatgttgcgtccaaaagatgcagactcaaaaatgagacttgatggacctcacagtgaggtacaacctgtgttccttgatgagatctcttcctctgctaatggaagcagtagaagggaggatggcttgttggataactgtggaattctttcaaacaactgtttgccctgtcttgcatccactgttgcaccagttgagaagagacactctcttagcgctagttctccaagtgcaaagaagaaagctgctataaaacttcctttcaaatggaaagaagaaaatcctgttgctgctttactttcatctaaagccctgcttcaaagaccaatagctggtgcccaagtaccagtttgccggttggagaagaaaatggctgatagttggtcccatattgaaccgggcactttcagggttcgaggagaaaactacttcagggataaaaagaaggtgtttgctccaaattatgcagcatattatccttttggagttgatgtatttttaagccagagaaaaatatttcatattgcccgacttgtggaacttcctttcattgaacaatctggaacacttcctcccatccttgttgtgaatgttcagatcccattatatccaactgcaatttttcaaagtgaaactgatggtgaagggatgagttttgtcttgtattttaagctttcagaaagttacgccaaggaacttcctcttcattttcaagagagtatcaagagactgattgacgatgaagtggaaaaagtgaaggcttttcctgttgaacatactgcaccctttagggaacgattgaagatattaggtcgtgtagcaaatatggaggaactcccattaagtgcagcagagaggaagcttatgcatgcctacaatgaaaaacctgttctatcacgtcctcaacacgagttttacaagggagagaattactttgagattgacatagatatgcatagattcagttacatctctaggaagggttttgaaacattcctagatagactaaagctctgttgcttggatgttgggctaacaattcagggaaacaaagttgaagaattgccggagcaggttttatgttgtgtacggttaaatgaaattgactatgcgaattatcagcaactggggttggaatagagagccctttgaattagctactgcacagacattgcaaataaagaagtaacttagagaagttcagttgtccctcgcatttggttcctatctctgtctgtctcattttatccccgactatcaaaatcttcaatgtcaggaagattaagagtgtagcaggttcaacgggaactgttaaggatgattctcacattcagatcaccatacagatcctccttgaacttgcctgtttggggccaactcgtatgccacctagcgttttatgacatgagttctggacaaatcaatagcttacataaagctatatatgtgtatgaattcatggacaacattgagatacagttaatggaaccgattctaattcattctttttgtttgataattaagaaatctgttcaattacttttcagcaacatgagttttaagtgttctcatcgtaaatgacaatacgtgagggtggaaaagctcttcatatgtgtagggcacacttgttgattttcaccaagtcggatacttttagtgcttgtgttcttgtatacgaatgtttgctgtgaggggaaggttttcatttgcaatggaattgtgtttggattatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="+" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41517" stop="50117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41816" g_stop="41955" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41956" i_stop="42005" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42006" g_stop="42177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="320" r_length="180" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42178" i_stop="44413" i_length="2236">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44414" g_stop="44497" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="404" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44498" i_stop="44595" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44596" g_stop="45087" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="896" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45088" i_stop="46444" i_length="1357">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46445" g_stop="46580" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="1032" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46581" i_stop="46776" i_length="196">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46777" g_stop="46939" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1033" r_stop="1195" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46940" i_stop="47602" i_length="663">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47603" g_stop="47731" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1324" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47732" i_stop="48071" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48072" g_stop="48266" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1325" r_stop="1519" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48267" i_stop="48911" i_length="645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48912" g_stop="49034" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1520" r_stop="1642" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="49035" i_stop="49125" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49126" g_stop="49817" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1643" r_stop="2334" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="+" ref_id="SGN-U580121" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>2326</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41816" e_stop="41955"/>
          <exon e_start="42006" e_stop="42177"/>
          <exon e_start="44414" e_stop="44497"/>
          <exon e_start="44596" e_stop="45087"/>
          <exon e_start="46445" e_stop="46580"/>
          <exon e_start="46777" e_stop="46939"/>
          <exon e_start="47603" e_stop="47731"/>
          <exon e_start="48072" e_stop="48266"/>
          <exon e_start="48912" e_stop="49034"/>
          <exon e_start="49126" e_stop="49817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTTGTTAGTAGGGGTGGGTGGGTGGGTAGGGAGAGATGGGGGGTTGTGTATCA--------AGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATGGTACTTTCTTGTTTTATTTTTCTTGTTTGTGTGTACATTTTTTGGTATTTTGTTAGTTTTCTTGTTCAATGTAATTGTGATTGTTGAAAGTTAGTCTCTTTGTTGGAGATTATCGGAATTGAGAAGAAAGTCAAGTTTTTGATAGAATAACTATTAGTTGAGTCATGAGTGAGCTTTTTGATTATTGAAAGTTACTTTCTTTGTTGAAGAAATTTGGATTCATGAAGAAAGTTTGAGTTTTTGATATGATAATGGTTATTTGAGTGAGCATTTGAGAAAATTTCAATGTAGTTCTGATTATTGAAAGTTACTTTCTTTGTTGAAAAAAATTGGAATCGAGAAGAAAGTCGAGTTTTTGATACGATAACTATTAGTTGAGTCATGAGTGAGGTTTGTGATTATTGAAAGTTACTTTCTTTGTTGAGGAAATTTGGATTCATGAAGAAAGTTTGAGTTTTTGATATAATAAGTTTAGTTGAGTGAGCATTTGAGAAAAAATCAATGTAATTGTGATTATTGAAAGTTACTTTCTCTGTTGAAGAAAATTGGAATCGAGAAGAAAATTGAGTTTTTTGATATAATAGCTGTTAGGTGTGTGAGTAATTTAGAAATCTAACACAATCAAATTTTTAATCTGCTAATGTTGGTGGAGAGTGAAACTAATCTGTGTTTTTGGAGTTTGATTTCTTGACTTGTTTTGGTTAAGTTGAATTGAAGGTTGGAGATATGGAGGTTGGTGGGGTGCATTTTTCTTTGGAGGTTTGGTTAGATGCTTTTTGAAGGAAAAAAAATCAACTTTTCTTTGGAGTAGCTCATTTTTGTTGTTGTTATTGTTTTTTATTAGTTGATATGCTTTCTTCACTGCCGTTTTTCACTTGAGTCACTTGTGGGATCACATGGGATGTGTTTTTGTTGTTGTATTTTCTTATATTGCTAAATAGGAGAGGGTGGAGTGGTTTGTTCCTAGGGAGAGCCTAAAGAAGTGGTTCAGTTGAAGAGAATGTGCTAATATGTTTTAATGGCGTAAAAGTAGCAGGTGATGCGCCGACACCGTTATAGAGAAGGAGGAGGAAGAGGGAAATGAAAAGGAACTGTTTTGGCAGTTTTTTTTTCTATGCTCTGCATCCATACAAATCGATTTATGTGTATGGTTTGGTACTCTAAATCGCAATGCACATTATATATTGCTGTATATAACAACTGGAAAGATGAGGAGGTGATGCCAAATTGTTGAGGAAGGCATTAGATTTTCTTCTTTGGATGAGATATAGCTATAACTCTCATTTACCTTTGGTATCTTAAATTGTCATGCACCTGAATGGAGCTGGCGATTTTCTTCAACAATTTGTTTCTTGAATGAAGTGAATTGGGATAATTACTCATTAGGAATTTTATATAGCTTATTCTAGGTTCATTAGTGTAGTCTTCTGGATTGAGTTTACTTTATGCCTACTGCCAAACATGGTTATGTGCTGTCTTTTTTGAAATTGTATACGGTAAATCCTACTCCCTCAAATTCTCCAACATTTTCCGTTACCACTTTGCTCCCTTGTGATTTAGACGCCCGCCCAACTTTGAGGTAGAGGGTCCTTACCAGTAGGCTATCCTTCACTTGACTACTCAGTTTTTTAATTTTGTCTTAAACCATAACATTGTTACATAATTGAGTTAACAAAACTTGGCTCCCTAAGAACTTTAATTTTTAAGTCACTTCTCTTCTTTTAGGTCGAATATCTAAATTAAACGCAGTAGTTTGAGTATAACATAAGGAATTGAATAGTAGCATATTCTTTGTGTCAAAAGAGACAATGTGATTAGTGGAAGTTAGAAATATACTGAGGTTATCTGTATGCTTGGGGGTAATTGTACCAGTTGAAGTCCCAAACAAAGACACATGTTGTTTTCTTATGATAAAAATTGATGGTTCGTTTTATCTATTTTATACAATGCTAAATAACCGGAAGTTGTTAATATCCTTGCAATGTTTCCACTTATCCTAAAATCCACAATGTTCCTTTGAAACTGGAACTAAGCAGGCGTCGTTTAGATCATGATGAATATCATCTATATCACATCTTCATTTACCTTCCAATCATTCCTGGGAGGGATACTTTTCATAGTTTAGCTTCATGTTATACTTCTGTCTGTCCAATCTAAAGCGGAATACTCTGTAGTGAATAAACCATTGGAACTAGCCTTTTCTAACATTTTGTGCTACTGTATAATGCAATAACAGGAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATGGTATGGTTTTTTCATTTCAGTTTATACATTCTAACTGCAGTTGGGAAAATGACATGCTGTGAATTTAAGAATAGAAATCTAATCACACTATTCTGCAGATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATGAGACTTGATGGACCTCACAGTGAGGTACAACCTGTGTTCCTTGATGAGATCTCTTCCTCTGCTAATGGAAGCAGTAGAAGGGAGGATGGCTTGTTGGATAACTGTGGAATTCTTTCAAACAACTGTTTGCCCTGTCTTGCATCCACTGTTGCACCAGTTGAGAAGAGACACTCTCTTAGCGCTAGTTCTCCAAGTGCAAAGAAGAAAGCTGCTATAAAACTTCCTTTCAAATGGAAAGAAGAAAATCCTGTTGCTGCTTTACGTAAGTTTCTATGTCTACTCTTTTCCGCTTCCAATCTAAGCCTAGATGCTTCAGTGCAATGTTTGTGCATGTGCATCCCCGAGTGATTGAGTTTCTCTGTCTAATTGTCAAGTGTTCCTAATAATTGTTAGTGCATTCTGGAACTAGTTTTTTGATAAGGTAAGATTTTATTGAAGACAGTAATATTATCAATTGCACAAATGAGTCAACTGACTTATGCTTCATCAACAATGTGCAAGAATGAAGAAATTTCATGAATTGCTTTTTTGACCTTAGCCTATTGCAAGATTTAATATTGTTGTGGTGATTTTTTTTTCTTCCAACGAGAACTTGTTATATTCAACTATTATCATCTTACCGCCAAAACTTTGTCCCATCTGATGCCAACAAGAACTATTATTTGGAAATTATCTTCAGCTCTCCTAAAAATATTACTTGCAGACAAACATGGACAATGTTTGAGCTGTTTATCTTCTTTCCAAGGTATAACTGAAGTAGGTTTTTGAGGATTAATAAGCAAAGTGCTCCGAAGTTTGTGTGGAAGTGTAGTTACTGAAGTATGAGGCATTGAAAAAAAGTGTTGGGTATAGAAAACCTGTTCTGATGCTGCTGTTAAGAGATTTTATGTTGTGTGTATTTCAGTTGGGTTTAATGCTCCTTCCCTTTCTGAAATTTTGAAGACCAAATGTTATCTAGAATCCACATGAGCTCAACGCTGTGTACTTTATGCCGAGAGTAGATGAGTCTGAACTGCTGCAGGTGGATGAATACCTTAATACGCGGCCTTTGTTGTAAAGTTAAAAGATGATCATAGACTAGTACGATGTTACGCATGTATGCAACATTCTGTTTTATCAACACCCCTTATAAGTAATAAGATATCAGACTTAGCATTGAACATTACAATAAAAAGGATTTCACGGGGCAGCGTGGATGTGGGATATTTCAGGGATGTCATTTGTTAATGCAGAATCCAAATGGAGGATATTTGGTGCATTTGATGTGAGAGATGATACAGTTACTCCTCTATTGACTTGGGGAACATTGTTTGTGAGCTTTTCATCTTAGTAATCTGCTTTTGGGGGTGTAAATTATTGAGTTATTTTCTAAAAGAGTGTAGAATATTCGTTGATCTTGCTCTATTACACTAACTAGCAAAATCAGAAAAAGAAAGAGATGAGGAACGGAGTAACTATGATCAGAGTAAGTGCATAATTTTGCATCATAAGTCAATGTTGAGCATGAGAAGTTGCACTCTAGATTTTAATTTGGAGATGGGAGGTGTACACACCAACTGCTAAACAGATCAGGGAATTGAGGCAAAACAAACTGACTCTTATCTTTTTCTGTGGTACAGTTTCATCTAAAGCCCTGCTTCAAAGACCAATAGCTGGTGCCCAAGTACCAGTTTGCCGGTTGGAGAAGAAAATGGCTGATAGTTGGTCCCATATTGAACCGGGCACTTTCAGGGTTCGAGGAGAAAACTACTTCAGGTAAAGTGTTCCCTCTCTTAGCACTCACATGCACACAGCTACATGCAAAAAATAGATAAAGATGTCTCTTATCATATAAAACCTCACTGCATCTATATGATAATCATCCACATGCATATCTATATGTGCCTGCTGCCACTGCACTAGTTCATGTGTTGTATAAGGTATTTCATTGCACACATATTCTTTTGTGCAGGGATAAAAAGAAGGTGTTTGCTCCAAATTATGCAGCATATTATCCTTTTGGAGTTGATGTATTTTTAAGCCAGAGAAAAATATTTCATATTGCCCGACTTGTGGAACTTCCTTTCATTGAACAATCTGGAACACTTCCTCCCATCCTTGTTGTGAATGTTCAGGTATGATTGGTTTTTGAAATCATAGTAATGAGTATTTATGTCGTCTTTTTCTTGATCTAACTTCCATAAAAGCTTTCAAGGTCCTGAAAGTTGTTGTAAATGTTATCTGCTTTGTTCATTTTAAGTCTGTCTGTGTAACTTTTTAATTAAAGATAGGTAATGTCTCCATGCTATAGATGCAATTCATTTTTATTTTCAAAGTAGAAAGTATTCTGCTGAATCATTTTACATTGTATGAAAGGGTGTCGATTGATAGTACTTTATGGTCCCCTCATGGGGCAGTTTGAGTAATGAATGTAGTGTAACCAATAACCACTAATCCTACTTTATTCATGGCGTGTCCTAAACTCCTAATCTTACAAAGTTCCATTATTTAAATAGTCATTTATGTCATGTATCTTTAGCCATTTCATAGCACTCTTAACCTTGCCTTTTTCTTTTGGTTTTTCAATTTCCCAAAGTCCTCTCATTAACAGTCAACTCAGCCTTTCTGATGTTCTGCTGTTGAAATTAAATGTACCCATGAAGACATCACTGGTTACTTCGTTAATGTGTATTCTCGGGATTAGCCACTTTAGACTATTGTAATTTTCAATAATCGTAGCATTAGCTGCTTTATATTTAATTATTCCCTCATGTTGCAGAACTATTTTTCTTCTGCAGATCCCATTATATCCAACTGCAATTTTTCAAAGTGAAACTGATGGTGAAGGGATGAGTTTTGTCTTGTATTTTAAGCTTTCAGAAAGTTACGCCAAGGAACTTCCTCTTCATTTTCAAGAGAGTATCAAGGTATGTTTGAGAGCTCATGTTTTCTCATATGTATTCTTTTTCTTTTTCCGTGTATGATTGGTTTCAAGTCCCTCTCTTGCAGTGATGGTTTCTTCATATGATACTATCATCTTTTCCCATTTCATTTGCAGTTCTATCTACTTTTGCTTATACATCCTTTGAAGTGTTGTGTCATATTCACTACGTCTTTTATAGCTTTCTGTCATGATTCATGTCTTCCATATTTCATGAGTGGCCATCATATTTACTTGAGTCAGATTTTTTATTTTTTATTTGCAAACAATCGAGTTCCTATTTGAACTAATTTTCACTTTTCTTCACCTTGTCTTATCTTGGACAGAGACTGATTGACGATGAAGTGGAAAAAGTGAAGGCTTTTCCTGTTGAACATACTGCACCCTTTAGGGAACGATTGAAGATATTAGGTCGTGTAGCAAATATGGAGGAACTCCCATTAAGTGCAGCAGAGAGGAAGCTTATGCATGCCTACAATGAAAAACCTGTTCTATCACGTCCTCAACACGAGTTTTACAAGGTAAATTTTTGCAAACTTTGGTTCTTTTCAAATTGGAATATGTTTTACTCAAATTTATTAAATGTCCCTGTCATTCCCTTCTAACATTTAGTTTTTGGGAAAAGGAAAACATGCTGTTTTGAACTGGGAAACGTCCTCAAATTATCTGGTGTGTCCAGTAGTAAATTAAGACTGTTCCACAGGGACTAGGATAATAAAGCAGTTTACATTTCAACAAAGATTACTGAATGAACTAAAAGTTGTTTCTAGAATGACTGATGAAACATGGACCAACTATTTGTCGCAAATCATGTTAGGCACTCTTTAACTCTATAAAATATAATTTCTTTGCATGACTTAATCTCGAATTTTAACTTCTCATCTGAACGTACTAGTTTTTTTCCTGTGGACTTATATTGTTTTCTTGCATTATGTTTCTTTAGACCATACAAGTAGGCATAGTTTATTGGTTTTACTTTGCATTTGTTACGGTTACGGAAGCATAAGATATCTTCACTTATATTTTTCGATCTGAAATTTATGAAAAATTGTTTTAGTTCGCATACATCTAGACTGTTGCCCGTTTTCTGCATTGAGAAAGAAATATATGACTAGGTGTTGAACGTCTTTTGATTCTTACTTCGGCTGTTAATGATCTTTTTGCAGGGAGAGAATTACTTTGAGATTGACATAGATATGCATAGATTCAGTTACATCTCTAGGAAGGGTTTTGAAACATTCCTAGATAGACTAAAGCTCTGTTGCTTGGATGTTGGGCTAACAATTCAGGCAAGTATCTGTCTCAAACGTTCCATTATTTTTCTTTCCTTGGAAATCATTTTTTCCATCTAGGTAACGTCTTTTACCACTTTCCAAACAGGGAAACAAAGTTGAAGAATTGCCGGAGCAGGTTTTATGTTGTGTACGGTTAAATGAAATTGACTATGCGAATTATCAGCAACTGGGGTTGGAATAGAGAGCCCTTTGAATTAGCTACTGCACAGACATTGCAAATAAAGAAGTAACTTAGAGAAGTTCAGTTGTCCCTCGCATTTGGTTCCTATCTCTGTCTGTCTCATTTTATCCCCGACTATCAAAATCTTCAATGTCAGGAAGATTAAGAGTGTAGCAGGTTCAACGGGAACTGTTAAGGATGATTCTCACATTCAGATCACCATACAGATCCTCCTTGAACTTGCCTGTTTGGGGCCAACTCGTATGCCACCTAGCGTTTTATGACATGAGTTCTGGACAAATCAATAGCTTACATAAAGCTATATATGTGTATGAATTCATGGACAACATTGAGATACAGTTAATGGAACCGATTCTAATTCATTCTTTTTGTTTGATAATTAAGAAATCTGTTCAATTACTTTTCAGCAACATGAGTTTTAAGTGTTCTCATCGTAAATGACAATACGTGAGGGTGGAAAAGCTCTTCATATGTGTAGGGCACACTTGTTGATTTTCACCAAGTCGGATACTTTTAGTGCTTGTGTTCTTGTATACGAATGTTTGCTGTGAGGGGAAGGTTTTCATTTGCAATGGAATTGTGTTTGGATTATCGCC</genome_strand>
        <mrna_strand>GGAAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTT..................................................GTGTATCAAGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATG..................................................................................................ATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATGAGACTTGATGGACCTCACAGTGAGGTACAACCTGTGTTCCTTGATGAGATCTCTTCCTCTGCTAATGGAAGCAGTAGAAGGGAGGATGGCTTGTTGGATAACTGTGGAATTCTTTCAAACAACTGTTTGCCCTGTCTTGCATCCACTGTTGCACCAGTTGAGAAGAGACACTCTCTTAGCGCTAGTTCTCCAAGTGCAAAGAAGAAAGCTGCTATAAAACTTCCTTTCAAATGGAAAGAAGAAAATCCTGTTGCTGCTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAGCCCTGCTTCAAAGACCAATAGCTGGTGCCCAAGTACCAGTTTGCCGGTTGGAGAAGAAAATGGCTGATAGTTGGTCCCATATTGAACCGGGCACTTTCAGGGTTCGAGGAGAAAACTACTTCAG....................................................................................................................................................................................................GGATAAAAAGAAGGTGTTTGCTCCAAATTATGCAGCATATTATCCTTTTGGAGTTGATGTATTTTTAAGCCAGAGAAAAATATTTCATATTGCCCGACTTGTGGAACTTCCTTTCATTGAACAATCTGGAACACTTCCTCCCATCCTTGTTGTGAATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATTATATCCAACTGCAATTTTTCAAAGTGAAACTGATGGTGAAGGGATGAGTTTTGTCTTGTATTTTAAGCTTTCAGAAAGTTACGCCAAGGAACTTCCTCTTCATTTTCAAGAGAGTATCAAG....................................................................................................................................................................................................................................................................................................................................................AGACTGATTGACGATGAAGTGGAAAAAGTGAAGGCTTTTCCTGTTGAACATACTGCACCCTTTAGGGAACGATTGAAGATATTAGGTCGTGTAGCAAATATGGAGGAACTCCCATTAAGTGCAGCAGAGAGGAAGCTTATGCATGCCTACAATGAAAAACCTGTTCTATCACGTCCTCAACACGAGTTTTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGAATTACTTTGAGATTGACATAGATATGCATAGATTCAGTTACATCTCTAGGAAGGGTTTTGAAACATTCCTAGATAGACTAAAGCTCTGTTGCTTGGATGTTGGGCTAACAATTCAG...........................................................................................GGAAACAAAGTTGAAGAATTGCCGGAGCAGGTTTTATGTTGTGTACGGTTAAATGAAATTGACTATGCGAATTATCAGCAACTGGGGTTGGAATAGAGAGCCCTTTGAATTAGCTACTGCACAGACATTGCAAATAAAGAAGTAACTTAGAGAAGTTCAGTTGTCCCTCGCATTTGGTTCCTATCTCTGTCTGTCTCATTTTATCCCCGACTATCAAAATCTTCAATGTCAGGAAGATTAAGAGTGTAGCAGGTTCAACGGGAACTGTTAAGGATGATTCTCACATTCAGATCACCATACAGATCCTCCTTGAACTTGCCTGTTTGGGGCCAACTCGTATGCCACCTAGCGTTTTATGACATGAGTTCTGGACAAATCAATAGCTTACATAAAGCTATATATGTGTATGAATTCATGGACAACATTGAGATACAGTTAATGGAACCGATTCTAATTCATTCTTTTTGTTTGATAATTAAGAAATCTGTTCAATTACTTTTCAGCAACATGAGTTTTAAGTGTTCTCATCGTAAATGACAATACGTGAGGGTGGAAAAGCTCTTCATATGTGTAGGGCACACTTGTTGATTTTCACCAAGTCGGATACTTTTAGTGCTTGTGTTCTTGTATACGAATGTTTGCTGTGAGGGGAAGGTTTTCATTTGCAATGGAATTGTGTTTGGATTATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602606" ref_strand="+" ref_description="SGN-U602606 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147777923|emb|CAN69092.1| (e_value=1e-14) hypothetical; (*ATH) AT1G74800.1 (e_value=4e-12) | Symbol: None | galactosyltransferase family protein, contains Pfam profile: PF01762 galactosyltransferase | chr1:28105629-28108773 REVERSE | Aliases: F25A4.23, F25A4_23; ">
      <seq>ttgcttaatagtgttggtgagttgagtggttcgagtcaagattcaggttttccttcaagggttatgtcaaggagagctaaaatggggttttcattacctcataggaagatggtagagtttaagagaatttcaggtttggtttttgatgagaaggtgtttgatagttttgataaggaagagttttctgagctgcataaggttgttagggatgcttttgtagttgggaagaaactatttcaggatattgaatcggggaaagttcagggggaggtagtgagtgggactcagaaccggactgagtcgtgtcctgattcggtgtctttgtggggtagtgagtttgtagctggtgggaagattatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="+" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="67979" stop="68940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68277" g_stop="68640" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="+" ref_id="SGN-U602606" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68277" e_stop="68640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTAATAGTGTTGGTGAGTTGAGTGGTTCGAGTCAAGATTCAGTTTTTCCTTCAAGGGTTATGTCAAGGAGAGCTAAAATGGGGTTTTCATTACCTCATAGGAAGATGGTAGAGTTTAAGAGAATTTCAGGTTTGGTTTTTGATGAGAAGGTGTTTGATAGTTTTGATAAGGAAGAGTTTTCTGAGCTGCATAAGGTTGTTAGGGATGCTTTTGTAGTTGGGAAGAAACTATTTCAGGATATTGAATCGGGGAAAGTTCAGGGGGAGGTAGTGAGTGGGACTCAGAACCGGACTGAGTCGTGTCCTGATTCGGTGTCTTTGTGGGGTAGTGAGTTTGTAGCTGGTGGGAAGATTATGGTGA</genome_strand>
        <mrna_strand>TTGCTTAATAGTGTTGGTGAGTTGAGTGGTTCGAGTCAAGATTCAGGTTTTCCTTCAAGGGTTATGTCAAGGAGAGCTAAAATGGGGTTTTCATTACCTCATAGGAAGATGGTAGAGTTTAAGAGAATTTCAGGTTTGGTTTTTGATGAGAAGGTGTTTGATAGTTTTGATAAGGAAGAGTTTTCTGAGCTGCATAAGGTTGTTAGGGATGCTTTTGTAGTTGGGAAGAAACTATTTCAGGATATTGAATCGGGGAAAGTTCAGGGGGAGGTAGTGAGTGGGACTCAGAACCGGACTGAGTCGTGTCCTGATTCGGTGTCTTTGTGGGGTAGTGAGTTTGTAGCTGGTGGGAAGATTATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571680" ref_strand="+" ref_description="SGN-U571680 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118486624|gb|ABK95149.1| (e_value=6e-35) unknown; (*ATH) AT1G27120.1 (e_value=2e-32) | Symbol: None | galactosyltransferase family protein, contains Pfam profile:PF01762 galactosyltransferase | chr1:9421164-9424054 FORWARD | Aliases: T7N9.18, T7N9_18; ">
      <seq>gcaatcataagctaaggttgtttaagatggaggacgtgagcatgggaatgtgggtagaacaattcaacagttccaggcccgtagagtatgtgcatagcttgaagttctgtcagtttgggtgcattgatgattattacactgcacattatcaatctccaaggcaaatgatctgcctgtggagaaagttgctgaaccaagggaaacctcagtgctgtaatgtgagatgacaaggcataccctgtcagctagtgttaggcaactctgaaaaggaaacgagacaagatagatgccaaggcgcgcataccctgttagctagtgttaggcaacacggaaaaggaagcgagacaagataagttcctgggaagagcttgtacatattgctcgagtaaattagcctatcgtgctataattatatttacttcattcattcttttgttggggcgtcagtcttgtaccccaggctagttgacacgtcagtctcgttaaactgtatgaaaacaatgacagcttaagctcttatatatgaaattcaagggtgaatggctcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0095J08-0RYGB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0095J08.2" temp_strand="+" temp_description="C05SLm0095J08.2  AC212311.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0095J08 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="71337" stop="72472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71489" g_stop="71505" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71506" i_stop="71637" i_length="132">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71638" g_stop="72172" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="552" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0095J08.2" gen_strand="+" ref_id="SGN-U571680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0095J08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71489" e_stop="71505"/>
          <exon e_start="71638" e_stop="72172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATAAGCTAAGGGTAAGTGCCTTGATCTGCTTTGTGAAATAATCCTAACCTCTCTCTTGTCCCCCCCCCCCCCCCCCCCCCGGTCCCTTGTGGAAACCTGGACAGAGAAATAATCATATCTAACATATATTTGACCTGCTGCAGTTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTC</genome_strand>
        <mrna_strand>GCAATCATAAGCTAAGG....................................................................................................................................TTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7223" PGL_stop="3987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7223" e_stop="7089"/>
            <exon e_start="6633" e_stop="6412"/>
            <exon e_start="6330" e_stop="6163"/>
            <exon e_start="6049" e_stop="5690"/>
            <exon e_start="5610" e_stop="5504"/>
            <exon e_start="4532" e_stop="3987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.993"/>
          <exon-intron don_prob="0.534" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.287" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="7223" e_stop="7089" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="7088" i_stop="6634" i_length="455"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6633" e_stop="6412" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.935">
            <gDNA_intron_boundary i_start="6411" i_stop="6331" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6330" e_stop="6163" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6162" i_stop="6050" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6049" e_stop="5690" e_length="360"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.732">
            <gDNA_intron_boundary i_start="5689" i_stop="5611" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5610" e_stop="5504" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.287">
            <gDNA_intron_boundary i_start="5503" i_stop="4533" i_length="971"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4532" e_stop="3987" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7223" stop="7089"/>
              <exon start="6633" stop="6412"/>
              <exon start="6330" stop="6163"/>
              <exon start="6049" stop="5690"/>
              <exon start="5610" stop="5504"/>
              <exon start="4532" stop="3987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAG : GTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAG : GTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAG : GATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAATGGAGAGTTGTGGCTACCTGGGCTTTTTTTGCAGTATATCAATCATTAATCTTGTATAATTTTGTAATCCATTCGAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCAATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTAGCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATCTACTCGGGTATCCACTTGCACAAAGAACAG : GAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCTCGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGG : GGTACAAAGATGGTTTTCCCCATATGATTACCAGATTGTTCAGGAAATTCACAAGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAGAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAATCACGACCAAAGGTACCTAAAAAGAGCTGAGTTCCCTAAAATTTTGTACAAATTTTCTTCTTTAACCTTTCTTCTCTCCTATACAGCTTTTAACAGCTACGTAGAATTATTTCACTCTCATTCTTCGTACCGTTTCGAGTTAATTCTACAGTTACATACATATATATATATATAGTCTCTAGTTGTGTTTAGTGAGATTGTAGTAAAAATAACTGAGAAGAAAACAATAATGTACATTATTTAATGTAACCATCCCATACACACTTGCC</gDNA_template>
            <first_frame> K  L  A  L  V  I  D  G  K  V  L  M  Y  A  L  D  P  N  L  R  V  M  L  L  N  L  S  L  N  C  S  A  V  V  C  C  R  V  S  P  L  Q  K  A  Q  :  V  T  S  L  V  R  K  G  A  Q  R  I  T  L  S  I  G  D  G  A  N  D  V  S  M  I  Q  A  A  H  V  G  V  G  I  S  G  Q  E  G  M  Q  A  V  M  S  S  D  F  A  I  A  Q  F  R  F  L  T  D  L  L  L  V  H  G  R  W  S  Y  L  R  I  C  K  :  V  V  T  Y  F  F  Y  K  N  L  M  F  T  L  T  Q  F  W  F  T  F  R  T  G  F  S  G  Q  R  F  Y  D  D  W  F  Q  S  L  Y  N  V  I  F  T  A  L  P  V  I  I  L  G  L  F  E  K  :  D  V  S  A  S  L  S  K  K  Y  P  E  L  Y  K  E  G  I  R  N  T  F  F  K  W  R  V  V  A  T  W  A  F  F  A  V  Y  Q  S  L  I  L  Y  N  F  V  I  H  S  S  T  K  G  M  N  S  S  G  K  M  F  G  L  W  D  V  S  T  M  A  Y  T  C  V  V  V  T  V  N  L  R  L  L  M  M  C  N  T  I  T  R  W  H  H  I  S  V  G  G  S  I  L  L  W  F  I  F  V  F  I  Y  S  G  I  H  L  H  K  E  Q  :  E  G  I  Y  L  V  I  I  V  L  I  S  T  L  Y  F  Y  L  A  L  L  L  V  P  V  A  A  L  F  V  D  F  L  Y  Q  G :   V  Q  R  W  F  S  P  Y  D  Y  Q  I  V  Q  E  I  H  K  H  E  I  D  N  S  R  I  G  L  L  E  I  R  N  E  L  S  P  D  E  E  R  R  Y  A  I  M  Q  L  P  G  Q  R  S  K  H  T  G  F  A  F  D  S  P  G  Y  E  S  F  F  A  S  Q  A  G  V  L  A  P  Q  K  A  W  D  V  A  R  R  A  S  M  M  K  S  R  P  K  V  P  K  K  S  *  V  P  *  N  F  V  Q  I  F  F  F  N  L  S  S  L  L  Y  S  F  *  Q  L  R  R  I  I  S  L  S  F  F  V  P  F  R  V  N  S  T  V  T  Y  I  Y  I  Y  I  V  S  S  C  V  *  *  D  C  S  K  N  N  *  E  E  N  N  N  V  H  Y  L  M  *  P  S  H  T  H  L   </first_frame>
            <second_frame>  S  *  R  *  *  L  M  G  R  C  *  C  M  P  *  T  L  I  F  V  *  C  C  *  T  *  A  *  I  A  V  Q  W  F  A  V  V  F  L  L  Y  R  K  L  R :   *  P  A  W  L  G  R  G  L  R  E  L  H  L  V  S  V  M  V  L  M  T  *  V  *  F  K  L  L  M  L  V  L  E  *  V  D  R  R  E  C  K  Q  *  C  L  V  I  L  Q  *  L  S  S  A  F  S  L  I  Y  C  L  S  M  D  A  G  H  I  L  E  Y  A  R :   W  *  H  I  S  F  T  R  I  *  C  L  H  S  L  S  F  G  L  P  S  A  L  D  S  L  V  K  G  S  M  M  I  G  S  S  L  S  T  M  *  S  S  Q  R  F  L  L  L  F  L  G  F  L  R  R :   M  S  V  H  L  S  R  R  N  I  L  S  Y  T  K  K  E  L  E  I  H  S  S  N  G  E  L  W  L  P  G  L  F  L  Q  Y  I  N  H  *  S  C  I  I  L  *  S  I  R  V  R  R  A  *  I  H  L  A  R  C  L  A  Y  G  M  S  V  Q  W  P  T  P  V  L  L  *  L  S  I  Y  V  S  L  *  C  A  T  Q  L  Q  D  G  I  T  L  A  L  E  G  A  Y  Y  Y  G  S  F  L  Y  L  S  T  R  V  S  T  C  T  K  N  R :   R  V  S  I  *  S  S  L  F  *  *  A  H  Y  T  S  T  L  R  C  F  S  Y  Q  L  L  H  F  L  L  T  S  Y  I  R   : G  Y  K  D  G  F  P  H  M  I  T  R  L  F  R  K  F  T  S  T  K  S  T  T  A  G  L  V  Y  *  R  S  V  T  S  F  L  Q  M  K  K  G  D  T  P  *  C  N  F  L  D  R  D  Q  N  I  L  V  L  L  L  I  H  P  V  M  S  H  F  S  H  L  R  L  A  C  W  H  L  R  R  R  G  T  L  L  G  E  Q  A  *  *  N  H  D  Q  R  Y  L  K  R  A  E  F  P  K  I  L  Y  K  F  S  S  L  T  F  L  L  S  Y  T  A  F  N  S  Y  V  E  L  F  H  S  H  S  S  Y  R  F  E  L  I  L  Q  L  H  T  Y  I  Y  I  *  S  L  V  V  F  S  E  I  V  V  K  I  T  E  K  K  T  I  M  Y  I  I  *  C  N  H  P  I  H  T  C  </second_frame>
            <third_frame>   V  S  A  S  N  *  W  E  G  V  N  V  C  L  R  P  *  S  S  C  N  V  V  E  L  E  L  E  L  Q  C  S  G  L  L  S  C  F  S  F  T  E  S  S   : G  N  Q  L  G  *  E  G  G  S  E  N  Y  T  *  Y  R  *  W  C  *  *  R  E  Y  D  S  S  C  S  C  W  C  W  N  K  W  T  G  G  N  A  S  S  D  V  *  *  F  C  N  S  S  V  P  L  S  H  *  F  I  A  C  P  W  T  L  V  I  S  *  N  M  Q   : G  G  D  I  F  L  L  Q  E  S  D  V  Y  T  H  S  V  L  V  Y  L  P  H  W  I  L  W  S  K  V  L  *  *  L  V  P  V  S  L  Q  C  D  L  H  S  A  S  C  Y  Y  S  W  A  F  *  E   : G  C  Q  C  I  S  L  E  E  I  S  *  V  I  Q  R  R  N  *  K  Y  I  L  Q  M  E  S  C  G  Y  L  G  F  F  C  S  I  S  I  I  N  L  V  *  F  C  N  P  F  E  Y  E  G  H  E  F  I  W  Q  D  V  W  P  M  G  C  Q  Y  N  G  L  H  L  C  C  C  N  C  Q  F  T  S  P  Y  D  V  Q  H  N  Y  K  M  A  S  H  *  R  W  R  E  H  I  I  M  V  H  F  C  I  Y  L  L  G  Y  P  L  A  Q  R  T   : G  G  Y  L  F  S  H  H  C  S  D  K  H  I  I  L  L  P  C  A  A  S  R  T  S  C  C  T  F  C  *  L  P  I  S  G  :  G  T  K  M  V  F  P  I  *  L  P  D  C  S  G  N  S  Q  A  R  N  R  Q  Q  Q  D  W  F  I  R  D  P  *  R  A  F  S  R  *  R  K  E  I  R  H  N  A  T  S  W  T  E  I  K  T  Y  W  F  C  F  *  F  T  R  L  *  V  I  F  R  I  S  G  W  R  V  G  T  S  E  G  V  G  R  C  S  E  S  K  H  D  E  I  T  T  K  G  T  *  K  E  L  S  S  L  K  F  C  T  N  F  L  L  *  P  F  F  S  P  I  Q  L  L  T  A  T  *  N  Y  F  T  L  I  L  R  T  V  S  S  *  F  Y  S  Y  I  H  I  Y  I  Y  S  L  *  L  C  L  V  R  L  *  *  K  *  L  R  R  K  Q  *  C  T  L  F  N  V  T  I  P  Y  T  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7223" stop="7089"/>
                    <exon start="6633" stop="6412"/>
                    <exon start="6330" stop="6163"/>
                    <exon start="6049" stop="5690"/>
                    <exon start="5610" stop="5504"/>
                    <exon start="4532" stop="4226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLALVIDGKVLMYALDPNLRVMLLNLSLNCSAVVCCRVSPLQKAQVTSLVRKGAQRITLSIGDGANDVSMIQAAHVGVGISGQEGMQAVMSSDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLMFTLTQFWFTFRTGFSGQRFYDDWFQSLYNVIFTALPVIILGLFEKDVSASLSKKYPELYKEGIRNTFFKWRVVATWAFFAVYQSLILYNFVIHSSTKGMNSSGKMFGLWDVSTMAYTCVVVTVNLRLLMMCNTITRWHHISVGGSILLWFIFVFIYSGIHLHKEQEGIYLVIIVLISTLYFYLALLLVPVAALFVDFLYQGVQRWFSPYDYQIVQEIHKHEIDNSRIGLLEIRNELSPDEERRYAIMQLPGQRSKHTGFAFDSPGYESFFASQAGVLAPQKAWDVARRASMMKSRPKVPKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7223" e_stop="7089"/>
            <exon e_start="6633" e_stop="6412"/>
            <exon e_start="6330" e_stop="6163"/>
            <exon e_start="6049" e_stop="5978"/>
            <exon e_start="4446" e_stop="4255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.993"/>
          <exon-intron don_prob="0.534" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="7223" e_stop="7089" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="7088" i_stop="6634" i_length="455"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6633" e_stop="6412" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.935">
            <gDNA_intron_boundary i_start="6411" i_stop="6331" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6330" e_stop="6163" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6162" i_stop="6050" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6049" e_stop="5978" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5977" i_stop="4447" i_length="1531"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="4446" e_stop="4255" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7223" stop="7089"/>
              <exon start="6633" stop="6412"/>
              <exon start="6330" stop="6163"/>
              <exon start="6049" stop="5978"/>
              <exon start="4446" stop="4255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTAGCGCTAGTAATTGATGGGAAGGTGTTAATGTATGCCTTAGACCCTAATCTTCGTGTAATGTTGTTGAACTTGAGCTTGAATTGCAGTGCAGTGGTTTGCTGTCGTGTTTCTCCTTTACAGAAAGCTCAG : GTAACCAGCTTGGTTAGGAAGGGGGCTCAGAGAATTACACTTAGTATCGGTGATGGTGCTAATGACGTGAGTATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGTCTAGTGATTTTGCAATAGCTCAGTTCCGCTTTCTCACTGATTTATTGCTTGTCCATGGACGCTGGTCATATCTTAGAATATGCAAG : GTGGTGACATATTTCTTTTACAAGAATCTGATGTTTACACTCACTCAGTTTTGGTTTACCTTCCGCACTGGATTCTCTGGTCAAAGGTTCTATGATGATTGGTTCCAGTCTCTCTACAATGTGATCTTCACAGCGCTTCCTGTTATTATTCTTGGGCTTTTTGAGAAG : GATGTCAGTGCATCTCTCTCGAAGAAATATCCTGAGTTATACAAAGAAGGAATTAGAAATACATTCTTCAAA : TAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTCCTGGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAGAAGGCGTGGGACGTTGCTCGGAGAGCAAGCATGATGAAAT</gDNA_template>
            <first_frame> K  L  A  L  V  I  D  G  K  V  L  M  Y  A  L  D  P  N  L  R  V  M  L  L  N  L  S  L  N  C  S  A  V  V  C  C  R  V  S  P  L  Q  K  A  Q  :  V  T  S  L  V  R  K  G  A  Q  R  I  T  L  S  I  G  D  G  A  N  D  V  S  M  I  Q  A  A  H  V  G  V  G  I  S  G  Q  E  G  M  Q  A  V  M  S  S  D  F  A  I  A  Q  F  R  F  L  T  D  L  L  L  V  H  G  R  W  S  Y  L  R  I  C  K  :  V  V  T  Y  F  F  Y  K  N  L  M  F  T  L  T  Q  F  W  F  T  F  R  T  G  F  S  G  Q  R  F  Y  D  D  W  F  Q  S  L  Y  N  V  I  F  T  A  L  P  V  I  I  L  G  L  F  E  K  :  D  V  S  A  S  L  S  K  K  Y  P  E  L  Y  K  E  G  I  R  N  T  F  F  K  :  *  R  S  V  T  S  F  L  Q  M  K  K  G  D  T  P  *  C  N  F  L  D  R  D  Q  N  I  L  V  L  L  L  I  H  P  V  M  S  H  F  S  H  L  R  L  A  C  W  H  L  R  R  R  G  T  L  L  G  E  Q  A  *  *  N </first_frame>
            <second_frame>  S  *  R  *  *  L  M  G  R  C  *  C  M  P  *  T  L  I  F  V  *  C  C  *  T  *  A  *  I  A  V  Q  W  F  A  V  V  F  L  L  Y  R  K  L  R :   *  P  A  W  L  G  R  G  L  R  E  L  H  L  V  S  V  M  V  L  M  T  *  V  *  F  K  L  L  M  L  V  L  E  *  V  D  R  R  E  C  K  Q  *  C  L  V  I  L  Q  *  L  S  S  A  F  S  L  I  Y  C  L  S  M  D  A  G  H  I  L  E  Y  A  R :   W  *  H  I  S  F  T  R  I  *  C  L  H  S  L  S  F  G  L  P  S  A  L  D  S  L  V  K  G  S  M  M  I  G  S  S  L  S  T  M  *  S  S  Q  R  F  L  L  L  F  L  G  F  L  R  R :   M  S  V  H  L  S  R  R  N  I  L  S  Y  T  K  K  E  L  E  I  H  S  S  N :   R  D  P  *  R  A  F  S  R  *  R  K  E  I  R  H  N  A  T  S  W  T  E  I  K  T  Y  W  F  C  F  *  F  T  R  L  *  V  I  F  R  I  S  G  W  R  V  G  T  S  E  G  V  G  R  C  S  E  S  K  H  D  E   </second_frame>
            <third_frame>   V  S  A  S  N  *  W  E  G  V  N  V  C  L  R  P  *  S  S  C  N  V  V  E  L  E  L  E  L  Q  C  S  G  L  L  S  C  F  S  F  T  E  S  S   : G  N  Q  L  G  *  E  G  G  S  E  N  Y  T  *  Y  R  *  W  C  *  *  R  E  Y  D  S  S  C  S  C  W  C  W  N  K  W  T  G  G  N  A  S  S  D  V  *  *  F  C  N  S  S  V  P  L  S  H  *  F  I  A  C  P  W  T  L  V  I  S  *  N  M  Q   : G  G  D  I  F  L  L  Q  E  S  D  V  Y  T  H  S  V  L  V  Y  L  P  H  W  I  L  W  S  K  V  L  *  *  L  V  P  V  S  L  Q  C  D  L  H  S  A  S  C  Y  Y  S  W  A  F  *  E   : G  C  Q  C  I  S  L  E  E  I  S  *  V  I  Q  R  R  N  *  K  Y  I  L  Q   : I  E  I  R  N  E  L  S  P  D  E  E  R  R  Y  A  I  M  Q  L  P  G  Q  R  S  K  H  T  G  F  A  F  D  S  P  G  Y  E  S  F  F  A  S  Q  A  G  V  L  A  P  Q  K  A  W  D  V  A  R  R  A  S  M  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7223" stop="7089"/>
                    <exon start="6633" stop="6412"/>
                    <exon start="6330" stop="6163"/>
                    <exon start="6049" stop="5978"/>
                    <exon start="4446" stop="4444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLALVIDGKVLMYALDPNLRVMLLNLSLNCSAVVCCRVSPLQKAQVTSLVRKGAQRITLSIGDGANDVSMIQAAHVGVGISGQEGMQAVMSSDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLMFTLTQFWFTFRTGFSGQRFYDDWFQSLYNVIFTALPVIILGLFEKDVSASLSKKYPELYKEGIRNTFFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5993" stop="5978"/>
                    <exon start="4446" stop="4256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYILQIEIRNELSPDEERRYAIMQLPGQRSKHTGFAFDSPGYESFFASQAGVLAPQKAWDVARRASMMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7726" PGL_stop="7454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7726" e_stop="7578"/>
            <exon e_start="7492" e_stop="7454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.580" acc_prob="0.994" e_score="0.973"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="7726" e_stop="7578" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.580" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7577" i_stop="7493" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="7492" e_stop="7454" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7726" stop="7578"/>
              <exon start="7492" stop="7454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGATCTTGTATTGATTGGATGCACTGCTATAGAAGACAAGCTTCAGGAAGGTGTACCTGCCTGCATAGAGACTCTTTCAAGGGCTGGAATTAAGATTTGGGTGCTTACTGGGGATAAACTGGAAACAGCAATAAACATTGCTTATG : CATGCAATTTGATCAATAACAGCATGAAACAATTTGTTA</gDNA_template>
            <first_frame> K  G  S  C  I  D  W  M  H  C  Y  R  R  Q  A  S  G  R  C  T  C  L  H  R  D  S  F  K  G  W  N  *  D  L  G  A  Y  W  G  *  T  G  N  S  N  K  H  C  L  C :   M  Q  F  D  Q  *  Q  H  E  T  I  C   </first_frame>
            <second_frame>  K  D  L  V  L  I  G  C  T  A  I  E  D  K  L  Q  E  G  V  P  A  C  I  E  T  L  S  R  A  G  I  K  I  W  V  L  T  G  D  K  L  E  T  A  I  N  I  A  Y   : A  C  N  L  I  N  N  S  M  K  Q  F  V  </second_frame>
            <third_frame>   R  I  L  Y  *  L  D  A  L  L  *  K  T  S  F  R  K  V  Y  L  P  A  *  R  L  F  Q  G  L  E  L  R  F  G  C  L  L  G  I  N  W  K  Q  Q  *  T  L  L  M  :  H  A  I  *  S  I  T  A  *  N  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0095J08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19961" PGL_stop="20387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19961" e_stop="20387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19961" e_stop="20387" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19961" stop="20387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTACATATAGAAGTGAATCAATATATACTAGAAGTGATTAATATAATTCAAATCAAATGAACAAAAATAATCCTTATTAGGCCTATTAATATGTGTACTTCACACGTAAACTATGTAAATTACAAAATAAAAATTATTTTTATATTGTTACCTGATTTTAAAATTTCTAACTCTTTGAATACATAGGAATAATTAGAAGAAAATTATGATTTTATAGTAAATTATATATAAACGTATGGAAAAATATTAAAATAAACTTTAAAAATATTTTCGATTAAACTATGTAGGTATTATAGGAAGAAGATGGCAAGGGTCTTGCTTTACTTTGACCAAAAAATAAAAATTAGCATTGTATTTAGCTAAGAATTATACTAGTCATATTTGAAATAACACTAATAAGAATAATTTTGTTTCTATTGTGTAT</gDNA_template>
            <first_frame> N  V  H  I  E  V  N  Q  Y  I  L  E  V  I  N  I  I  Q  I  K  *  T  K  I  I  L  I  R  P  I  N  M  C  T  S  H  V  N  Y  V  N  Y  K  I  K  I  I  F  I  L  L  P  D  F  K  I  S  N  S  L  N  T  *  E  *  L  E  E  N  Y  D  F  I  V  N  Y  I  *  T  Y  G  K  I  L  K  *  T  L  K  I  F  S  I  K  L  C  R  Y  Y  R  K  K  M  A  R  V  L  L  Y  F  D  Q  K  I  K  I  S  I  V  F  S  *  E  L  Y  *  S  Y  L  K  *  H  *  *  E  *  F  C  F  Y  C  V  </first_frame>
            <second_frame>  M  Y  I  *  K  *  I  N  I  Y  *  K  *  L  I  *  F  K  S  N  E  Q  K  *  S  L  L  G  L  L  I  C  V  L  H  T  *  T  M  *  I  T  K  *  K  L  F  L  Y  C  Y  L  I  L  K  F  L  T  L  *  I  H  R  N  N  *  K  K  I  M  I  L  *  *  I  I  Y  K  R  M  E  K  Y  *  N  K  L  *  K  Y  F  R  L  N  Y  V  G  I  I  G  R  R  W  Q  G  S  C  F  T  L  T  K  K  *  K  L  A  L  Y  L  A  K  N  Y  T  S  H  I  *  N  N  T  N  K  N  N  F  V  S  I  V  Y </second_frame>
            <third_frame>   C  T  Y  R  S  E  S  I  Y  T  R  S  D  *  Y  N  S  N  Q  M  N  K  N  N  P  Y  *  A  Y  *  Y  V  Y  F  T  R  K  L  C  K  L  Q  N  K  N  Y  F  Y  I  V  T  *  F  *  N  F  *  L  F  E  Y  I  G  I  I  R  R  K  L  *  F  Y  S  K  L  Y  I  N  V  W  K  N  I  K  I  N  F  K  N  I  F  D  *  T  M  *  V  L  *  E  E  D  G  K  G  L  A  L  L  *  P  K  N  K  N  *  H  C  I  *  L  R  I  I  L  V  I  F  E  I  T  L  I  R  I  I  L  F  L  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0095J08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26835" PGL_stop="21666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26835" e_stop="26331"/>
            <exon e_start="25506" e_stop="25318"/>
            <exon e_start="25183" e_stop="25118"/>
            <exon e_start="23331" e_stop="23263"/>
            <exon e_start="23145" e_stop="23077"/>
            <exon e_start="22229" e_stop="21666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26835" e_stop="26331" e_length="505"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.967">
            <gDNA_intron_boundary i_start="26330" i_stop="25507" i_length="824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25506" e_stop="25318" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25317" i_stop="25184" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25183" e_stop="25118" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25117" i_stop="23332" i_length="1786"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23331" e_stop="23263" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23262" i_stop="23146" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23145" e_stop="23077" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.844" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23076" i_stop="22230" i_length="847"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="22229" e_stop="21666" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26835" stop="26331"/>
              <exon start="25506" stop="25318"/>
              <exon start="25183" stop="25118"/>
              <exon start="23331" stop="23263"/>
              <exon start="23145" stop="23077"/>
              <exon start="22229" stop="21666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCAACTGCACAAAGAGTCTCCCTCTTCTTCTTCTTCTCTCTCTCTAATGGTGGTGGTCGCTATTATACGCCAGTAGGTACAGTACGCACCATCAACTTCCATTTTTGTACACACAGAGCTTCTATATATATCTTCTCTCATTCACATTTCCTACGTGAATGCCTAATAATTCACCATTCGCTTCGGATTTGGATCGGGTATTGAAATGGATCCACAAGCTTCCATGATGAACCACGCCGGAGGATTTCAGTCTCCGCCGTTTAATTTATCTGAGATCTGGCAGTTTCCGATCAATGCAGGTGAAGGTGAGACGCCGTATAGTTTTCCGTTGTCTACGGCGGCTGCGCCGCAGAATGTGAGTGATGATGTTCGGAATAATGATCCTATGGTTCTAGACCGGAGAACTAATAATTACAGCGGTGGCGGCGGTGGTGGTGCAGCTAGGAAGCGAAACGAGGATGATGAATCAGCTAAAGGAGTTTCCACTAGCGGCAATGGCTTG : ACTGAATCTGCTAGTAAGCGGATGAAGGTTACAAGATCAAATGAGAATTGCGAAGCTAGAGGTGACGGGGAAGGGAATTCAGTGAAATCTGCAGAACAACCTGCAAAGCCTGCTGAACCGCCAAAAGATTACATTCACGTGCGGGCAAGGAGGGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGA : GCTAGGAGAGAGAAGATAAGTGAGAGGATGAAAGTCCTCCAAGATATAGTCCCTGGTTGTAATAAG : GTTATTGGCAAAGCTCTTGTTCTTGATGAGATAATAAATTATATTCAATCATTACAACACCAGGTTGAG : TTCTTATCAATGAAGCTTGAAGCAGTTAATTCAAAAATGCCAAGCATAGAGGGATATCCATCTAAAGAT : TTCGGACAGCAGCCATTTGATACAAATGCTATGGCATTCAGTTCACAAGCTACAAGGGAATATACCAGGGGAACATCACCAGATTGGTTGCATATGCAGCTTGGTGGAGGCTTTGAAAGAACAACATAAATTTGCATCAGAAGGTTAATAATAAGTTCATTGGAAGGTTCCCTCTTTTGGTGATTGCCAGAACACAAGACCAGTCCAGGTTTCTTTGAAAGCTTATATCCAGTATCTTTATCAAGCACAAAATTGTTGAATGTCTAGTACAGCTGATAAACAGACAACCACGTTTTCCACTTCGTTCGTCTATCGTGTTATACTTGTGGCAGGCACCATATAAGTATTCTTGTGAAAGTGCTTGTTTAATAATAGGTAAAGAATTGGGTGTATTAGTATGCTGAAGTTGTAGCTAAATAAAGTGGTCTGTCCCGTCCTTAAAACCATTGGTAGATAGCATCAAGTCTTGTAAATAGGGAAAATCAGTGTTTCTGTGTTTCGATTGTTCAACAAGTTAAGACAATATACTTTATACCAAATGAATGATGCCTGCAAGTTTTTGGA</gDNA_template>
            <first_frame> F  S  T  A  Q  R  V  S  L  F  F  F  F  S  L  S  N  G  G  G  R  Y  Y  T  P  V  G  T  V  R  T  I  N  F  H  F  C  T  H  R  A  S  I  Y  I  F  S  H  S  H  F  L  R  E  C  L  I  I  H  H  S  L  R  I  W  I  G  Y  *  N  G  S  T  S  F  H  D  E  P  R  R  R  I  S  V  S  A  V  *  F  I  *  D  L  A  V  S  D  Q  C  R  *  R  *  D  A  V  *  F  S  V  V  Y  G  G  C  A  A  E  C  E  *  *  C  S  E  *  *  S  Y  G  S  R  P  E  N  *  *  L  Q  R  W  R  R  W  W  C  S  *  E  A  K  R  G  *  *  I  S  *  R  S  F  H  *  R  Q  W  L   : D  *  I  C  *  *  A  D  E  G  Y  K  I  K  *  E  L  R  S  *  R  *  R  G  R  E  F  S  E  I  C  R  T  T  C  K  A  C  *  T  A  K  R  L  H  S  R  A  G  K  E  G  S  S  Y  *  *  S  Q  S  S  R  K   : S  *  E  R  E  D  K  *  E  D  E  S  P  P  R  Y  S  P  W  L  *  *   : G  Y  W  Q  S  S  C  S  *  *  D  N  K  L  Y  S  I  I  T  T  P  G  *   : V  L  I  N  E  A  *  S  S  *  F  K  N  A  K  H  R  G  I  S  I  *  R   : F  R  T  A  A  I  *  Y  K  C  Y  G  I  Q  F  T  S  Y  K  G  I  Y  Q  G  N  I  T  R  L  V  A  Y  A  A  W  W  R  L  *  K  N  N  I  N  L  H  Q  K  V  N  N  K  F  I  G  R  F  P  L  L  V  I  A  R  T  Q  D  Q  S  R  F  L  *  K  L  I  S  S  I  F  I  K  H  K  I  V  E  C  L  V  Q  L  I  N  R  Q  P  R  F  P  L  R  S  S  I  V  L  Y  L  W  Q  A  P  Y  K  Y  S  C  E  S  A  C  L  I  I  G  K  E  L  G  V  L  V  C  *  S  C  S  *  I  K  W  S  V  P  S  L  K  P  L  V  D  S  I  K  S  C  K  *  G  K  S  V  F  L  C  F  D  C  S  T  S  *  D  N  I  L  Y  T  K  *  M  M  P  A  S  F  W  </first_frame>
            <second_frame>  F  Q  L  H  K  E  S  P  S  S  S  S  S  L  S  L  M  V  V  V  A  I  I  R  Q  *  V  Q  Y  A  P  S  T  S  I  F  V  H  T  E  L  L  Y  I  S  S  L  I  H  I  S  Y  V  N  A  *  *  F  T  I  R  F  G  F  G  S  G  I  E  M  D  P  Q  A  S  M  M  N  H  A  G  G  F  Q  S  P  P  F  N  L  S  E  I  W  Q  F  P  I  N  A  G  E  G  E  T  P  Y  S  F  P  L  S  T  A  A  A  P  Q  N  V  S  D  D  V  R  N  N  D  P  M  V  L  D  R  R  T  N  N  Y  S  G  G  G  G  G  G  A  A  R  K  R  N  E  D  D  E  S  A  K  G  V  S  T  S  G  N  G  L  :  T  E  S  A  S  K  R  M  K  V  T  R  S  N  E  N  C  E  A  R  G  D  G  E  G  N  S  V  K  S  A  E  Q  P  A  K  P  A  E  P  P  K  D  Y  I  H  V  R  A  R  R  G  Q  A  T  D  S  H  S  L  A  E  R  :  A  R  R  E  K  I  S  E  R  M  K  V  L  Q  D  I  V  P  G  C  N  K  :  V  I  G  K  A  L  V  L  D  E  I  I  N  Y  I  Q  S  L  Q  H  Q  V  E  :  F  L  S  M  K  L  E  A  V  N  S  K  M  P  S  I  E  G  Y  P  S  K  D  :  F  G  Q  Q  P  F  D  T  N  A  M  A  F  S  S  Q  A  T  R  E  Y  T  R  G  T  S  P  D  W  L  H  M  Q  L  G  G  G  F  E  R  T  T  *  I  C  I  R  R  L  I  I  S  S  L  E  G  S  L  F  W  *  L  P  E  H  K  T  S  P  G  F  F  E  S  L  Y  P  V  S  L  S  S  T  K  L  L  N  V  *  Y  S  *  *  T  D  N  H  V  F  H  F  V  R  L  S  C  Y  T  C  G  R  H  H  I  S  I  L  V  K  V  L  V  *  *  *  V  K  N  W  V  Y  *  Y  A  E  V  V  A  K  *  S  G  L  S  R  P  *  N  H  W  *  I  A  S  S  L  V  N  R  E  N  Q  C  F  C  V  S  I  V  Q  Q  V  K  T  I  Y  F  I  P  N  E  *  C  L  Q  V  F  G </second_frame>
            <third_frame>   F  N  C  T  K  S  L  P  L  L  L  L  L  S  L  *  W  W  W  S  L  L  Y  A  S  R  Y  S  T  H  H  Q  L  P  F  L  Y  T  Q  S  F  Y  I  Y  L  L  S  F  T  F  P  T  *  M  P  N  N  S  P  F  A  S  D  L  D  R  V  L  K  W  I  H  K  L  P  *  *  T  T  P  E  D  F  S  L  R  R  L  I  Y  L  R  S  G  S  F  R  S  M  Q  V  K  V  R  R  R  I  V  F  R  C  L  R  R  L  R  R  R  M  *  V  M  M  F  G  I  M  I  L  W  F  *  T  G  E  L  I  I  T  A  V  A  A  V  V  V  Q  L  G  S  E  T  R  M  M  N  Q  L  K  E  F  P  L  A  A  M  A  * :   L  N  L  L  V  S  G  *  R  L  Q  D  Q  M  R  I  A  K  L  E  V  T  G  K  G  I  Q  *  N  L  Q  N  N  L  Q  S  L  L  N  R  Q  K  I  T  F  T  C  G  Q  G  G  V  K  L  L  I  V  T  V  *  Q  K  E :   L  G  E  R  R  *  V  R  G  *  K  S  S  K  I  *  S  L  V  V  I  R :   L  L  A  K  L  L  F  L  M  R  *  *  I  I  F  N  H  Y  N  T  R  L  S :   S  Y  Q  *  S  L  K  Q  L  I  Q  K  C  Q  A  *  R  D  I  H  L  K  I :   S  D  S  S  H  L  I  Q  M  L  W  H  S  V  H  K  L  Q  G  N  I  P  G  E  H  H  Q  I  G  C  I  C  S  L  V  E  A  L  K  E  Q  H  K  F  A  S  E  G  *  *  *  V  H  W  K  V  P  S  F  G  D  C  Q  N  T  R  P  V  Q  V  S  L  K  A  Y  I  Q  Y  L  Y  Q  A  Q  N  C  *  M  S  S  T  A  D  K  Q  T  T  T  F  S  T  S  F  V  Y  R  V  I  L  V  A  G  T  I  *  V  F  L  *  K  C  L  F  N  N  R  *  R  I  G  C  I  S  M  L  K  L  *  L  N  K  V  V  C  P  V  L  K  T  I  G  R  *  H  Q  V  L  *  I  G  K  I  S  V  S  V  F  R  L  F  N  K  L  R  Q  Y  T  L  Y  Q  M  N  D  A  C  K  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26663" stop="26331"/>
                    <exon start="25506" stop="25318"/>
                    <exon start="25183" stop="25118"/>
                    <exon start="23331" stop="23263"/>
                    <exon start="23145" stop="23077"/>
                    <exon start="22229" stop="22101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTIRFGFGSGIEMDPQASMMNHAGGFQSPPFNLSEIWQFPINAGEGETPYSFPLSTAAAPQNVSDDVRNNDPMVLDRRTNNYSGGGGGGAARKRNEDDESAKGVSTSGNGLTESASKRMKVTRSNENCEARGDGEGNSVKSAEQPAKPAEPPKDYIHVRARRGQATDSHSLAERARREKISERMKVLQDIVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSKMPSIEGYPSKDFGQQPFDTNAMAFSSQATREYTRGTSPDWLHMQLGGGFERTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41812" PGL_stop="49817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41812" e_stop="42177"/>
            <exon e_start="44414" e_stop="44497"/>
            <exon e_start="44596" e_stop="44825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="0.995"/>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41812" e_stop="42177" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="42178" i_stop="44413" i_length="2236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44414" e_stop="44497" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="44498" i_stop="44595" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44596" e_stop="44825" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41812" stop="42177"/>
              <exon start="44414" stop="44497"/>
              <exon start="44596" stop="44825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAGAAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTTGTTAGTAGGGGTGGGTGGGTGGGTAGGGAGAGATGGGGGGTTGTGTATCAAGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATG : GAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATG : ATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATG</gDNA_template>
            <first_frame> R  K  K  K  I  S  S  S  F  S  P  L  F  F  S  K  D  Q  I  F  I  H  F  S  V  S  R  L  H  F  S  *  Y  P  Q  F  V  S  L  F  L  K  H  P  F  H  N  L  V  S  R  G  G  W  V  G  R  E  R  W  G  V  V  Y  Q  D  Q  M  V  V  L  E  V  D  *  V  V  Q  G  E  R  V  G  R  E  E  K  L  *  R  K  G  C  L  L  M  Y  Q  I  D  Q  Q  L  I  K  L  I  S  L  S  L  W  I  V  L  S  I  I  P  L  L  M  :  E  V  L  K  K  H  G  L  I  L  L  Q  D  L  N  L  M  A  V  M  K  I  S  R  V  L  L  M  :  M  C  F  H  S  M  A  L  I  V  G  G  L  V  L  L  Q  Q  Q  M  S  T  M  G  M  L  M  S  M  P  T  T  G  Y  P  P  T  C  *  G  K  E  N  Y  Q  Q  A  I  L  L  V  A  L  T  V  V  Q  L  K  R  Q  S  T  Q  A  V  C  C  V  Q  K  M  Q  T  Q  K   </first_frame>
            <second_frame>  G  R  K  K  L  V  L  L  F  H  L  Y  S  S  L  K  I  R  F  L  F  I  F  L  Y  Q  D  Y  I  F  L  D  T  H  N  L  F  P  C  F  *  N  T  L  F  I  I  L  L  V  G  V  G  G  W  V  G  R  D  G  G  L  C  I  K  T  R  W  L  C  W  R  *  I  R  W  F  K  E  K  E  *  E  E  K  K  S  C  K  E  K  G  V  F  S  C  I  R  S  I  S  S  *  *  S  *  *  V  F  P  F  G  S  F  F  Q  *  S  H  F  *  W :   K  Y  *  R  S  M  V  *  F  F  C  K  I  *  I  *  W  Q  *  *  R  F  P  E  C  C  *  * :   C  A  F  T  Q  W  L  *  L  W  A  D  *  C  C  F  S  N  R  C  P  P  W  G  C  *  C  Q  C  P  P  Q  V  I  L  R  P  A  E  A  R  R  T  I  N  K  Q  S  C  L  *  L  *  Q  W  F  S  *  N  V  N  Q  P  K  Q  Y  V  A  S  K  R  C  R  L  K  N  </second_frame>
            <third_frame>   E  E  K  N  *  F  F  F  F  T  F  I  L  L  *  R  S  D  F  Y  S  F  F  C  I  K  I  T  F  F  L  I  P  T  I  C  F  P  V  S  E  T  P  F  S  *  S  C  *  *  G  W  V  G  G  *  G  E  M  G  G  C  V  S  R  P  D  G  C  A  G  G  R  L  G  G  S  R  R  K  S  R  K  R  R  K  A  V  K  K  R  V  S  S  H  V  S  D  R  S  A  A  D  K  V  D  K  S  F  P  L  D  R  S  F  N  N  P  T  F  N   : G  S  T  E  E  A  W  F  D  S  S  A  R  F  E  S  D  G  S  D  E  D  F  Q  S  V  A  D   : D  V  L  S  L  N  G  S  D  C  G  R  T  S  V  A  S  A  T  D  V  H  H  G  D  V  D  V  N  A  H  H  R  L  S  S  D  L  L  R  Q  G  E  L  S  T  S  N  P  A  C  S  S  D  S  G  S  A  K  T  S  I  N  P  S  S  M  L  R  P  K  D  A  D  S  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41982" stop="42177"/>
                    <exon start="44414" stop="44497"/>
                    <exon start="44596" stop="44825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEMGGCVSRPDGCAGGRLGGSRRKSRKRRKAVKKRVSSHVSDRSAADKVDKSFPLDRSFNNPTFNGSTEEAWFDSSARFESDGSDEDFQSVADDVLSLNGSDCGRTSVASATDVHHGDVDVNAHHRLSSDLLRQGELSTSNPACSSDSGSAKTSINPSSMLRPKDADSKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41816" e_stop="41955"/>
            <exon e_start="42006" e_stop="42177"/>
            <exon e_start="44414" e_stop="44497"/>
            <exon e_start="44596" e_stop="45087"/>
            <exon e_start="46445" e_stop="46580"/>
            <exon e_start="46777" e_stop="46939"/>
            <exon e_start="47603" e_stop="47731"/>
            <exon e_start="48072" e_stop="48266"/>
            <exon e_start="48912" e_stop="49034"/>
            <exon e_start="49126" e_stop="49817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="0.907"/>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.800" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="41816" e_stop="41955" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41956" i_stop="42005" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="42006" e_stop="42177" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="42178" i_stop="44413" i_length="2236"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44414" e_stop="44497" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="44498" i_stop="44595" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44596" e_stop="45087" e_length="492"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.942">
            <gDNA_intron_boundary i_start="45088" i_stop="46444" i_length="1357"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46445" e_stop="46580" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46581" i_stop="46776" i_length="196"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46777" e_stop="46939" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="46940" i_stop="47602" i_length="663"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47603" e_stop="47731" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47732" i_stop="48071" i_length="340"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48072" e_stop="48266" e_length="195"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48267" i_stop="48911" i_length="645"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48912" e_stop="49034" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.800">
            <gDNA_intron_boundary i_start="49035" i_stop="49125" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49126" e_stop="49817" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41816" stop="41955"/>
              <exon start="42006" stop="42177"/>
              <exon start="44414" stop="44497"/>
              <exon start="44596" stop="45087"/>
              <exon start="46445" stop="46580"/>
              <exon start="46777" stop="46939"/>
              <exon start="47603" stop="47731"/>
              <exon start="48072" stop="48266"/>
              <exon start="48912" stop="49034"/>
              <exon start="49126" stop="49817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAAAATTAGTTCTTCTTTTTCACCTTTATTCTTCTCTAAAGATCAGATTTTTATTCATTTTTCTGTATCAAGATTACATTTTTCTTGATACCCACAATTTGTTTCCCTGTTTCTGAAACACCCTTTTCATAATCTT : AGACCAGATGGTTGTGCTGGAGGTAGATTAGGTGGTTCAAGGAGAAAGAGTAGGAAGAGAAGAAAAGCTGTAAAGAAAAGGGTGTCTTCTCATGTATCAGATCGATCAGCAGCTGATAAAGTTGATAAGTCTTTCCCTTTGGATCGTTCTTTCAATAATCCCACTTTTAATG : GAAGTACTGAAGAAGCATGGTTTGATTCTTCTGCAAGATTTGAATCTGATGGCAGTGATGAAGATTTCCAGAGTGTTGCTGATG : ATGTGCTTTCACTCAATGGCTCTGATTGTGGGCGGACTAGTGTTGCTTCAGCAACAGATGTCCACCATGGGGATGTTGATGTCAATGCCCACCACAGGTTATCCTCCGACCTGCTGAGGCAAGGAGAACTATCAACAAGCAATCCTGCTTGTAGCTCTGACAGTGGTTCAGCTAAAACGTCAATCAACCCAAGCAGTATGTTGCGTCCAAAAGATGCAGACTCAAAAATGAGACTTGATGGACCTCACAGTGAGGTACAACCTGTGTTCCTTGATGAGATCTCTTCCTCTGCTAATGGAAGCAGTAGAAGGGAGGATGGCTTGTTGGATAACTGTGGAATTCTTTCAAACAACTGTTTGCCCTGTCTTGCATCCACTGTTGCACCAGTTGAGAAGAGACACTCTCTTAGCGCTAGTTCTCCAAGTGCAAAGAAGAAAGCTGCTATAAAACTTCCTTTCAAATGGAAAGAAGAAAATCCTGTTGCTGCTTTAC : TTTCATCTAAAGCCCTGCTTCAAAGACCAATAGCTGGTGCCCAAGTACCAGTTTGCCGGTTGGAGAAGAAAATGGCTGATAGTTGGTCCCATATTGAACCGGGCACTTTCAGGGTTCGAGGAGAAAACTACTTCAG : GGATAAAAAGAAGGTGTTTGCTCCAAATTATGCAGCATATTATCCTTTTGGAGTTGATGTATTTTTAAGCCAGAGAAAAATATTTCATATTGCCCGACTTGTGGAACTTCCTTTCATTGAACAATCTGGAACACTTCCTCCCATCCTTGTTGTGAATGTTCAG : ATCCCATTATATCCAACTGCAATTTTTCAAAGTGAAACTGATGGTGAAGGGATGAGTTTTGTCTTGTATTTTAAGCTTTCAGAAAGTTACGCCAAGGAACTTCCTCTTCATTTTCAAGAGAGTATCAAG : AGACTGATTGACGATGAAGTGGAAAAAGTGAAGGCTTTTCCTGTTGAACATACTGCACCCTTTAGGGAACGATTGAAGATATTAGGTCGTGTAGCAAATATGGAGGAACTCCCATTAAGTGCAGCAGAGAGGAAGCTTATGCATGCCTACAATGAAAAACCTGTTCTATCACGTCCTCAACACGAGTTTTACAAG : GGAGAGAATTACTTTGAGATTGACATAGATATGCATAGATTCAGTTACATCTCTAGGAAGGGTTTTGAAACATTCCTAGATAGACTAAAGCTCTGTTGCTTGGATGTTGGGCTAACAATTCAG : GGAAACAAAGTTGAAGAATTGCCGGAGCAGGTTTTATGTTGTGTACGGTTAAATGAAATTGACTATGCGAATTATCAGCAACTGGGGTTGGAATAGAGAGCCCTTTGAATTAGCTACTGCACAGACATTGCAAATAAAGAAGTAACTTAGAGAAGTTCAGTTGTCCCTCGCATTTGGTTCCTATCTCTGTCTGTCTCATTTTATCCCCGACTATCAAAATCTTCAATGTCAGGAAGATTAAGAGTGTAGCAGGTTCAACGGGAACTGTTAAGGATGATTCTCACATTCAGATCACCATACAGATCCTCCTTGAACTTGCCTGTTTGGGGCCAACTCGTATGCCACCTAGCGTTTTATGACATGAGTTCTGGACAAATCAATAGCTTACATAAAGCTATATATGTGTATGAATTCATGGACAACATTGAGATACAGTTAATGGAACCGATTCTAATTCATTCTTTTTGTTTGATAATTAAGAAATCTGTTCAATTACTTTTCAGCAACATGAGTTTTAAGTGTTCTCATCGTAAATGACAATACGTGAGGGTGGAAAAGCTCTTCATATGTGTAGGGCACACTTGTTGATTTTCACCAAGTCGGATACTTTTAGTGCTTGTGTTCTTGTATACGAATGTTTGCTGTGAGGGGAAGGTTTTCATTTGCAATGGAATTGTGTTTGGATTATCGCC</gDNA_template>
            <first_frame> R  K  K  L  V  L  L  F  H  L  Y  S  S  L  K  I  R  F  L  F  I  F  L  Y  Q  D  Y  I  F  L  D  T  H  N  L  F  P  C  F  *  N  T  L  F  I  I  L :   D  Q  M  V  V  L  E  V  D  *  V  V  Q  G  E  R  V  G  R  E  E  K  L  *  R  K  G  C  L  L  M  Y  Q  I  D  Q  Q  L  I  K  L  I  S  L  S  L  W  I  V  L  S  I  I  P  L  L  M  :  E  V  L  K  K  H  G  L  I  L  L  Q  D  L  N  L  M  A  V  M  K  I  S  R  V  L  L  M  :  M  C  F  H  S  M  A  L  I  V  G  G  L  V  L  L  Q  Q  Q  M  S  T  M  G  M  L  M  S  M  P  T  T  G  Y  P  P  T  C  *  G  K  E  N  Y  Q  Q  A  I  L  L  V  A  L  T  V  V  Q  L  K  R  Q  S  T  Q  A  V  C  C  V  Q  K  M  Q  T  Q  K  *  D  L  M  D  L  T  V  R  Y  N  L  C  S  L  M  R  S  L  P  L  L  M  E  A  V  E  G  R  M  A  C  W  I  T  V  E  F  F  Q  T  T  V  C  P  V  L  H  P  L  L  H  Q  L  R  R  D  T  L  L  A  L  V  L  Q  V  Q  R  R  K  L  L  *  N  F  L  S  N  G  K  K  K  I  L  L  L  L  Y  :  F  H  L  K  P  C  F  K  D  Q  *  L  V  P  K  Y  Q  F  A  G  W  R  R  K  W  L  I  V  G  P  I  L  N  R  A  L  S  G  F  E  E  K  T  T  S   : G  I  K  R  R  C  L  L  Q  I  M  Q  H  I  I  L  L  E  L  M  Y  F  *  A  R  E  K  Y  F  I  L  P  D  L  W  N  F  L  S  L  N  N  L  E  H  F  L  P  S  L  L  *  M  F  R :   S  H  Y  I  Q  L  Q  F  F  K  V  K  L  M  V  K  G  *  V  L  S  C  I  L  S  F  Q  K  V  T  P  R  N  F  L  F  I  F  K  R  V  S  R :   D  *  L  T  M  K  W  K  K  *  R  L  F  L  L  N  I  L  H  P  L  G  N  D  *  R  Y  *  V  V  *  Q  I  W  R  N  S  H  *  V  Q  Q  R  G  S  L  C  M  P  T  M  K  N  L  F  Y  H  V  L  N  T  S  F  T  R :   E  R  I  T  L  R  L  T  *  I  C  I  D  S  V  T  S  L  G  R  V  L  K  H  S  *  I  D  *  S  S  V  A  W  M  L  G  *  Q  F  R :   E  T  K  L  K  N  C  R  S  R  F  Y  V  V  Y  G  *  M  K  L  T  M  R  I  I  S  N  W  G  W  N  R  E  P  F  E  L  A  T  A  Q  T  L  Q  I  K  K  *  L  R  E  V  Q  L  S  L  A  F  G  S  Y  L  C  L  S  H  F  I  P  D  Y  Q  N  L  Q  C  Q  E  D  *  E  C  S  R  F  N  G  N  C  *  G  *  F  S  H  S  D  H  H  T  D  P  P  *  T  C  L  F  G  A  N  S  Y  A  T  *  R  F  M  T  *  V  L  D  K  S  I  A  Y  I  K  L  Y  M  C  M  N  S  W  T  T  L  R  Y  S  *  W  N  R  F  *  F  I  L  F  V  *  *  L  R  N  L  F  N  Y  F  S  A  T  *  V  L  S  V  L  I  V  N  D  N  T  *  G  W  K  S  S  S  Y  V  *  G  T  L  V  D  F  H  Q  V  G  Y  F  *  C  L  C  S  C  I  R  M  F  A  V  R  G  R  F  S  F  A  M  E  L  C  L  D  Y  R  </first_frame>
            <second_frame>  E  K  N  *  F  F  F  F  T  F  I  L  L  *  R  S  D  F  Y  S  F  F  C  I  K  I  T  F  F  L  I  P  T  I  C  F  P  V  S  E  T  P  F  S  *  S   : *  T  R  W  L  C  W  R  *  I  R  W  F  K  E  K  E  *  E  E  K  K  S  C  K  E  K  G  V  F  S  C  I  R  S  I  S  S  *  *  S  *  *  V  F  P  F  G  S  F  F  Q  *  S  H  F  *  W :   K  Y  *  R  S  M  V  *  F  F  C  K  I  *  I  *  W  Q  *  *  R  F  P  E  C  C  *  * :   C  A  F  T  Q  W  L  *  L  W  A  D  *  C  C  F  S  N  R  C  P  P  W  G  C  *  C  Q  C  P  P  Q  V  I  L  R  P  A  E  A  R  R  T  I  N  K  Q  S  C  L  *  L  *  Q  W  F  S  *  N  V  N  Q  P  K  Q  Y  V  A  S  K  R  C  R  L  K  N  E  T  *  W  T  S  Q  *  G  T  T  C  V  P  *  *  D  L  F  L  C  *  W  K  Q  *  K  G  G  W  L  V  G  *  L  W  N  S  F  K  Q  L  F  A  L  S  C  I  H  C  C  T  S  *  E  E  T  L  S  *  R  *  F  S  K  C  K  E  E  S  C  Y  K  T  S  F  Q  M  E  R  R  K  S  C  C  C  F  T :   F  I  *  S  P  A  S  K  T  N  S  W  C  P  S  T  S  L  P  V  G  E  E  N  G  *  *  L  V  P  Y  *  T  G  H  F  Q  G  S  R  R  K  L  L  Q  :  G  *  K  E  G  V  C  S  K  L  C  S  I  L  S  F  W  S  *  C  I  F  K  P  E  K  N  I  S  Y  C  P  T  C  G  T  S  F  H  *  T  I  W  N  T  S  S  H  P  C  C  E  C  S   : D  P  I  I  S  N  C  N  F  S  K  *  N  *  W  *  R  D  E  F  C  L  V  F  *  A  F  R  K  L  R  Q  G  T  S  S  S  F  S  R  E  Y  Q   : E  T  D  *  R  *  S  G  K  S  E  G  F  S  C  *  T  Y  C  T  L  *  G  T  I  E  D  I  R  S  C  S  K  Y  G  G  T  P  I  K  C  S  R  E  E  A  Y  A  C  L  Q  *  K  T  C  S  I  T  S  S  T  R  V  L  Q   : G  R  E  L  L  *  D  *  H  R  Y  A  *  I  Q  L  H  L  *  E  G  F  *  N  I  P  R  *  T  K  A  L  L  L  G  C  W  A  N  N  S   : G  K  Q  S  *  R  I  A  G  A  G  F  M  L  C  T  V  K  *  N  *  L  C  E  L  S  A  T  G  V  G  I  E  S  P  L  N  *  L  L  H  R  H  C  K  *  R  S  N  L  E  K  F  S  C  P  S  H  L  V  P  I  S  V  C  L  I  L  S  P  T  I  K  I  F  N  V  R  K  I  K  S  V  A  G  S  T  G  T  V  K  D  D  S  H  I  Q  I  T  I  Q  I  L  L  E  L  A  C  L  G  P  T  R  M  P  P  S  V  L  *  H  E  F  W  T  N  Q  *  L  T  *  S  Y  I  C  V  *  I  H  G  Q  H  *  D  T  V  N  G  T  D  S  N  S  F  F  L  F  D  N  *  E  I  C  S  I  T  F  Q  Q  H  E  F  *  V  F  S  S  *  M  T  I  R  E  G  G  K  A  L  H  M  C  R  A  H  L  L  I  F  T  K  S  D  T  F  S  A  C  V  L  V  Y  E  C  L  L  *  G  E  G  F  H  L  Q  W  N  C  V  W  I  I  A </second_frame>
            <third_frame>   K  K  I  S  S  S  F  S  P  L  F  F  S  K  D  Q  I  F  I  H  F  S  V  S  R  L  H  F  S  *  Y  P  Q  F  V  S  L  F  L  K  H  P  F  H  N  L  :  R  P  D  G  C  A  G  G  R  L  G  G  S  R  R  K  S  R  K  R  R  K  A  V  K  K  R  V  S  S  H  V  S  D  R  S  A  A  D  K  V  D  K  S  F  P  L  D  R  S  F  N  N  P  T  F  N   : G  S  T  E  E  A  W  F  D  S  S  A  R  F  E  S  D  G  S  D  E  D  F  Q  S  V  A  D   : D  V  L  S  L  N  G  S  D  C  G  R  T  S  V  A  S  A  T  D  V  H  H  G  D  V  D  V  N  A  H  H  R  L  S  S  D  L  L  R  Q  G  E  L  S  T  S  N  P  A  C  S  S  D  S  G  S  A  K  T  S  I  N  P  S  S  M  L  R  P  K  D  A  D  S  K  M  R  L  D  G  P  H  S  E  V  Q  P  V  F  L  D  E  I  S  S  S  A  N  G  S  S  R  R  E  D  G  L  L  D  N  C  G  I  L  S  N  N  C  L  P  C  L  A  S  T  V  A  P  V  E  K  R  H  S  L  S  A  S  S  P  S  A  K  K  K  A  A  I  K  L  P  F  K  W  K  E  E  N  P  V  A  A  L   : L  S  S  K  A  L  L  Q  R  P  I  A  G  A  Q  V  P  V  C  R  L  E  K  K  M  A  D  S  W  S  H  I  E  P  G  T  F  R  V  R  G  E  N  Y  F  R :   D  K  K  K  V  F  A  P  N  Y  A  A  Y  Y  P  F  G  V  D  V  F  L  S  Q  R  K  I  F  H  I  A  R  L  V  E  L  P  F  I  E  Q  S  G  T  L  P  P  I  L  V  V  N  V  Q  :  I  P  L  Y  P  T  A  I  F  Q  S  E  T  D  G  E  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  L  H  F  Q  E  S  I  K  :  R  L  I  D  D  E  V  E  K  V  K  A  F  P  V  E  H  T  A  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  E  L  P  L  S  A  A  E  R  K  L  M  H  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  :  G  E  N  Y  F  E  I  D  I  D  M  H  R  F  S  Y  I  S  R  K  G  F  E  T  F  L  D  R  L  K  L  C  C  L  D  V  G  L  T  I  Q  :  G  N  K  V  E  E  L  P  E  Q  V  L  C  C  V  R  L  N  E  I  D  Y  A  N  Y  Q  Q  L  G  L  E  *  R  A  L  *  I  S  Y  C  T  D  I  A  N  K  E  V  T  *  R  S  S  V  V  P  R  I  W  F  L  S  L  S  V  S  F  Y  P  R  L  S  K  S  S  M  S  G  R  L  R  V  *  Q  V  Q  R  E  L  L  R  M  I  L  T  F  R  S  P  Y  R  S  S  L  N  L  P  V  W  G  Q  L  V  C  H  L  A  F  Y  D  M  S  S  G  Q  I  N  S  L  H  K  A  I  Y  V  Y  E  F  M  D  N  I  E  I  Q  L  M  E  P  I  L  I  H  S  F  C  L  I  I  K  K  S  V  Q  L  L  F  S  N  M  S  F  K  C  S  H  R  K  *  Q  Y  V  R  V  E  K  L  F  I  C  V  G  H  T  C  *  F  S  P  S  R  I  L  L  V  L  V  F  L  Y  T  N  V  C  C  E  G  K  V  F  I  C  N  G  I  V  F  G  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41908" stop="41955"/>
                    <exon start="42006" stop="42177"/>
                    <exon start="44414" stop="44497"/>
                    <exon start="44596" stop="45087"/>
                    <exon start="46445" stop="46580"/>
                    <exon start="46777" stop="46939"/>
                    <exon start="47603" stop="47731"/>
                    <exon start="48072" stop="48266"/>
                    <exon start="48912" stop="49034"/>
                    <exon start="49126" stop="49221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPQFVSLFLKHPFHNLRPDGCAGGRLGGSRRKSRKRRKAVKKRVSSHVSDRSAADKVDKSFPLDRSFNNPTFNGSTEEAWFDSSARFESDGSDEDFQSVADDVLSLNGSDCGRTSVASATDVHHGDVDVNAHHRLSSDLLRQGELSTSNPACSSDSGSAKTSINPSSMLRPKDADSKMRLDGPHSEVQPVFLDEISSSANGSSRREDGLLDNCGILSNNCLPCLASTVAPVEKRHSLSASSPSAKKKAAIKLPFKWKEENPVAALLSSKALLQRPIAGAQVPVCRLEKKMADSWSHIEPGTFRVRGENYFRDKKKVFAPNYAAYYPFGVDVFLSQRKIFHIARLVELPFIEQSGTLPPILVVNVQIPLYPTAIFQSETDGEGMSFVLYFKLSESYAKELPLHFQESIKRLIDDEVEKVKAFPVEHTAPFRERLKILGRVANMEELPLSAAERKLMHAYNEKPVLSRPQHEFYKGENYFEIDIDMHRFSYISRKGFETFLDRLKLCCLDVGLTIQGNKVEELPEQVLCCVRLNEIDYANYQQLGLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49375" stop="49662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVQRELLRMILTFRSPYRSSLNLPVWGQLVCHLAFYDMSSGQINSLHKAIYVYEFMDNIEIQLMEPILIHSFCLIIKKSVQLLFSNMSFKCSHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="68277" PGL_stop="68640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68277" e_stop="68640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="68277" e_stop="68640" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68277" stop="68640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTTAATAGTGTTGGTGAGTTGAGTGGTTCGAGTCAAGATTCAGTTTTTCCTTCAAGGGTTATGTCAAGGAGAGCTAAAATGGGGTTTTCATTACCTCATAGGAAGATGGTAGAGTTTAAGAGAATTTCAGGTTTGGTTTTTGATGAGAAGGTGTTTGATAGTTTTGATAAGGAAGAGTTTTCTGAGCTGCATAAGGTTGTTAGGGATGCTTTTGTAGTTGGGAAGAAACTATTTCAGGATATTGAATCGGGGAAAGTTCAGGGGGAGGTAGTGAGTGGGACTCAGAACCGGACTGAGTCGTGTCCTGATTCGGTGTCTTTGTGGGGTAGTGAGTTTGTAGCTGGTGGGAAGATTATGGTGA</gDNA_template>
            <first_frame> R  L  N  S  V  G  E  L  S  G  S  S  Q  D  S  V  F  P  S  R  V  M  S  R  R  A  K  M  G  F  S  L  P  H  R  K  M  V  E  F  K  R  I  S  G  L  V  F  D  E  K  V  F  D  S  F  D  K  E  E  F  S  E  L  H  K  V  V  R  D  A  F  V  V  G  K  K  L  F  Q  D  I  E  S  G  K  V  Q  G  E  V  V  S  G  T  Q  N  R  T  E  S  C  P  D  S  V  S  L  W  G  S  E  F  V  A  G  G  K  I  M  V  </first_frame>
            <second_frame>  G  L  I  V  L  V  S  *  V  V  R  V  K  I  Q  F  F  L  Q  G  L  C  Q  G  E  L  K  W  G  F  H  Y  L  I  G  R  W  *  S  L  R  E  F  Q  V  W  F  L  M  R  R  C  L  I  V  L  I  R  K  S  F  L  S  C  I  R  L  L  G  M  L  L  *  L  G  R  N  Y  F  R  I  L  N  R  G  K  F  R  G  R  *  *  V  G  L  R  T  G  L  S  R  V  L  I  R  C  L  C  G  V  V  S  L  *  L  V  G  R  L  W  * </second_frame>
            <third_frame>   A  *  *  C  W  *  V  E  W  F  E  S  R  F  S  F  S  F  K  G  Y  V  K  E  S  *  N  G  V  F  I  T  S  *  E  D  G  R  V  *  E  N  F  R  F  G  F  *  *  E  G  V  *  *  F  *  *  G  R  V  F  *  A  A  *  G  C  *  G  C  F  C  S  W  E  E  T  I  S  G  Y  *  I  G  E  S  S  G  G  G  S  E  W  D  S  E  P  D  *  V  V  S  *  F  G  V  F  V  G  *  *  V  C  S  W  W  E  D  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68277" stop="68639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLNSVGELSGSSQDSVFPSRVMSRRAKMGFSLPHRKMVEFKRISGLVFDEKVFDSFDKEEFSELHKVVRDAFVVGKKLFQDIESGKVQGEVVSGTQNRTESCPDSVSLWGSEFVAGGKIMV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="71489" PGL_stop="72172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71489" e_stop="71505"/>
            <exon e_start="71638" e_stop="72172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.907" e_score="0.824"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.824">
            <gDNA_exon_boundary e_start="71489" e_stop="71505" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.907">
            <gDNA_intron_boundary i_start="71506" i_stop="71637" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71638" e_stop="72172" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71489" stop="71505"/>
              <exon start="71638" stop="72172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACATAAGCTAAGG : TTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTC</gDNA_template>
            <first_frame> R  N  I  S  *  G :   C  L  R  W  R  T  *  A  W  E  C  G  *  N  N  S  T  V  P  G  P  *  S  M  C  I  A  *  S  S  V  S  L  G  A  L  M  I  I  T  L  H  I  I  N  L  Q  G  K  *  S  A  C  G  E  S  C  *  T  K  G  N  L  S  A  V  M  *  D  D  K  A  Y  P  V  S  *  C  *  A  T  L  K  R  K  R  D  K  I  D  A  K  A  R  I  P  C  *  L  V  L  G  N  T  E  K  E  A  R  Q  D  K  F  L  G  R  A  C  T  Y  C  S  S  K  L  A  Y  R  A  I  I  I  F  T  S  F  I  L  L  L  G  R  Q  S  C  T  P  G  *  L  T  R  Q  S  R  *  T  V  *  K  Q  *  Q  L  K  L  L  Y  M  K  F  K  G  E  W  L  I  F </first_frame>
            <second_frame>  E  T  *  A  K   : V  V  *  D  G  G  R  E  H  G  N  V  G  R  T  I  Q  Q  F  Q  A  R  R  V  C  A  *  L  E  V  L  S  V  W  V  H  *  *  L  L  H  C  T  L  S  I  S  K  A  N  D  L  P  V  E  K  V  A  E  P  R  E  T  S  V  L  *  C  E  M  T  R  H  T  L  S  A  S  V  R  Q  L  *  K  G  N  E  T  R  *  M  P  R  R  A  Y  P  V  S  *  C  *  A  T  R  K  R  K  R  D  K  I  S  S  W  E  E  L  V  H  I  A  R  V  N  *  P  I  V  L  *  L  Y  L  L  H  S  F  F  C  W  G  V  S  L  V  P  Q  A  S  *  H  V  S  L  V  K  L  Y  E  N  N  D  S  L  S  S  Y  I  *  N  S  R  V  N  G  S  F   </second_frame>
            <third_frame>   K  H  K  L  R  :  L  F  K  M  E  D  V  S  M  G  M  W  V  E  Q  F  N  S  S  R  P  V  E  Y  V  H  S  L  K  F  C  Q  F  G  C  I  D  D  Y  Y  T  A  H  Y  Q  S  P  R  Q  M  I  C  L  W  R  K  L  L  N  Q  G  K  P  Q  C  C  N  V  R  *  Q  G  I  P  C  Q  L  V  L  G  N  S  E  K  E  T  R  Q  D  R  C  Q  G  A  H  T  L  L  A  S  V  R  Q  H  G  K  G  S  E  T  R  *  V  P  G  K  S  L  Y  I  L  L  E  *  I  S  L  S  C  Y  N  Y  I  Y  F  I  H  S  F  V  G  A  S  V  L  Y  P  R  L  V  D  T  S  V  S  L  N  C  M  K  T  M  T  A  *  A  L  I  Y  E  I  Q  G  *  M  A  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0095J08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71491" stop="71505"/>
                    <exon start="71638" stop="71847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHKLRLFKMEDVSMGMWVEQFNSSRPVEYVHSLKFCQFGCIDDYYTAHYQSPRQMICLWRKLLNQGKPQCCNVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 19784 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2198 bytes was the average size of a spliced alignment
$ 13624 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1946 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:27:00
-->
