<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:35:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321909" ref_strand="+" ref_description="SGN-U321909        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT1G14140.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr1:4837924-4839630 REVERSE | Aliases: F7A19.22, F7A19_22 (evalue: 2e-107, score=386) genbank/nr: putative(evalue: 2e-136, score=488)">
      <seq>tgggaccactagctccctgtagcccaagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataagcaagggaattgcaagtatagaaactcctacgattgtcttgtcaaaacggtcagagttgaaggactcaaagcattgtggaagggattctttcctacatgggctaggcttggcccttggcaatttgtattctgggtatcatatgagaaattccgacaaattgctggtctctcttcattctaaacaattcatcacgctgagtgctgtataacacagtgaagcaaaggttcgattttcaaattttgttccctttgattgatcttgagttatatctatgttgtatcttagtgtgtgttgagaagccaagtgtgcttctttactcccttttgtaggaatacttgggtagacagagtcttctacttggaattattcatcataggcgttagttagttaaagaatgtattctacgggccgaattctgtttcagacaagaaactctatttaagtggaaaaggacatagagacgaattcattatctaactcattatctatcgaataacgaactcatcgagatttctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10890" stop="7669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10611" g_stop="10221" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="7969" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="1276" r_length="886" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1277" polyA_stop="1289"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U321909" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1277</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10611" e_stop="10221"/>
          <exon e_start="8854" e_stop="7969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</genome_strand>
        <mrna_strand>TGGGACCACTAGCTCCCTG-TAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337474" ref_strand="+" ref_description="SGN-U337474        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G14140.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr1:4837924-4839630 REVERSE | Aliases: F7A19.22, F7A19_22 (evalue: 2e-85, score=231) genbank/nr: putative(evalue: 1e-111, score=275)">
      <seq>aagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcagttgcattacttcttgtgattcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10885" stop="8242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10585" g_stop="10221" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8877" g_stop="8542" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="701" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U337474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10585" e_stop="10221"/>
          <exon e_start="8877" e_stop="8542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCT</genome_strand>
        <mrna_strand>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329932" ref_strand="+" ref_description="SGN-U329932        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533766|gb|AAT66765.1| hypothetical protein PGEC160O2.3 [Solanum demissum] (evalue: 7e-123, score=442)">
      <seq>gtttaagcagtcggaaacaccattgctccgccgcagcgccgcctttttctgttgcgtaagctcatcaaataatcgccaaaaagatgtatagaagtagagccaccatactgacatccaaatcattgagaactctatcaaaggtaagcagacaatctcttcatttagaatcgttaaagttcgttaattttttaagaaataccagtactgctactcaaatatctgagattgataattatagtgagtcaaaggggggaaataacagtgattttcagcaaaacccagatggggatttgaattataactcgaacaatacgggttctttgaataaattaaactggaaggatcaggaatgggcgtataatcagcagttatctcgtagcacgcaaggcggcgggagttatagtggaaattctaggagaatagagcagaaccctagtgaggtttatgagcaaaaaactagaactgaatttcaagaattaaaggataccaaagggtttcagcagaacccacatgcgaaaaatgagaacttttcatctgggtatgttaatgtttcatctagaaatgaatttcagcaaacagttgggagaaacaatgatttcgggtctcgaaaggattatcaaagtgatttagttcataatagaaatgatcgtagttccaggtttgagggaggtttagaagctcagtcgagtcaaaatggagtatatggacactatcaacagaatttaaatgggggaaacagtgtaacgtcacagcagaatttcaatggcaattacatgagaaacgttggaatgcctcaacaaaacattttccattatgaccctggaaatgtaaggaatgttcaatctgagtatccacaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11269" stop="12729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11569" g_stop="12429" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U329932" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11569" e_stop="12429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAGCAAAACATTTCCAATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</genome_strand>
        <mrna_strand>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAACAAAACATTTTCCATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344406" ref_strand="+" ref_description="SGN-U344406        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G25580.1 | Symbol: None | similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:At4g32450.1); similar to putative selenium-binding protein [Oryza sativa (japonica cultivar-group)] (GB:NP_916013.1); contains InterPro domain PPR repeat (InterPro:IPR002885) | chr2:10895092-10897445 FORWARD | Aliases: F3N11.3, F3N11_3 (evalue: 1e-52, score=203) genbank/nr: gi|49533766|gb|AAT66765.1| hypothetical protein PGEC160O2.3 [Solanum demissum] (evalue: 3e-90, score=334)">
      <seq>agattgttgagctcctggacccatgtcgtttggatgaacagtcaaaggcaggttttttggctgtaaaagcatcagacatcgctacggagaaagagaagaagaaatctgctcaaagtcttcttgaggctagaagcaaagttcatgaatatcgtgcgggagataggtcacatcccgatcatgagaagatatatgcattgcttaggggtttaaagcagctaatgaaggaggacggttatataccagagacgaagtttgtgttacatgatgtagaccaagaaactaaagaggacgctttaatggctcacagcgagagattggcttttgctcaaggtcttatgaatagctctgcacgatcaccaatccggattataaagaatctgcgtgtctgtggtgattgccataatgcattaaagattgcttcaaggcttgtcggtcgggaaattatcatgcgagatgctaaaagatttcatcatttaaaagatggattgtgctcgtgtaaggattattggtgaagatcctgaccttcaagtaatacttagtatattactttttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13024" stop="14180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13324" g_stop="13880" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U344406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13324" e_stop="13880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAGGTAATACTTAGTATATTACTTTTTTTATT</genome_strand>
        <mrna_strand>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAAGTAATACTTAGTATATTACTTTTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333157" ref_strand="+" ref_description="SGN-U333157        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | E3 ubiquitin ligase, putative, E3, ubiquitin ligase; contains similarity to anaphase-promoting complex subunit 2 GI:6180009 from (Homo sapiens) | chr2:1624738-1629159 FORWARD | Aliases: F28I8.30, F28I8_30(evalue: 3e-35, score=139) genbank/nr: gi|49533765|gb|AAT66764.1| putative anaphase promoting complex protein [Solanum demissum] (evalue: 2e-83, score=303)">
      <seq>cagagcacaatttacttgaacccaaagcctcactttttcctctctctctaagtctccttttgtcgggtctaactcaattacaaatctttatatgcatgatttttaatcaattagggttttttctccgccggaaaagtagatttctaaatcatcagtagcaaactttgtaagagcttcacaaatgacgtgcgatacgtcttcatcgggatgcggtttggagaaattggagtcgttgagtgatgattccataacagtgatatcggaaaactggaatggcttttgctcttcttcagaagctcttctcaaaggcagtggtgatttgtcattcagcgatgagtttgtaatgcgagcgaagaatctctgcaaacatggcctttcatctctagttgaacaacacttccttcgttgcattgaggaaatttttgagagaaatggagcaaaaaggttctggagttattttgaaccttacagaaatgctgcaccatctgaaactaataaggatcttattctagaagaagaaattcagcaaataatatgtaaagctttggaagaaatatcatctcaaaagcagttccaggagaagtgcctattattgttggctcgtgctttacagtcctatgaagaagacaaattgcaaggacaagcgaacccagattctactcgagtttatctcctctcgaatatcaactaattgtgtcttcagttctattggctagccttcctcccattttcctgggatacttcactggtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16271" stop="18871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16571" g_stop="16985" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16986" i_stop="17620" i_length="635">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17621" g_stop="17710" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="505" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17711" i_stop="18335" i_length="625">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18336" g_stop="18567" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="735" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U333157" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16571" e_stop="16985"/>
          <exon e_start="17621" e_stop="17710"/>
          <exon e_start="18336" e_stop="18567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAGGTCTGCTCAATATTTTTACATCATAGTGTTATTTTGTTTTCAATAAAATGTTCATCTACCGAAAGCAGATTAATATACTAAAACGTCATAGCTACTCAATTTCGCTAAATACAAGTAAAGATTGTTCCTTTTTGGAGGAAAATTGTGACCTGGATCATTGTTTCCTGCATTTGGTTGAGTATAATAGTAGGTGATATATGGTAATTATTCAAGGTATAATATTGGATATAAGTAGAAAAATGGAAAATGAGTTTCGCGCTTAAGTAACTGAATTAGTTTTCTTCTCTTATCATAAATTTTTGATTTTGGAGAAGACAATTTTAACTATTCAAGGGATTTAAATTGGAAATGTGTTGTCACAGTGAATATTTTGGTTGATGAAATCATCTCAATGTTTGAATACCTTGAATTTGAAAATGTTTTCCTCCAAGGTCAATATTCGAAATATTTGCCAATGATTTCATCAACAAAAATATTATATGTGAAAACATTTTCAGCCACACCATGCATACTGATTCATCATTTCCTAAATTTGTGATTTAACCTAGTTTTACATATTTTAAAGCCGGTATGGCCATTATGACTCTACTAGGTGTTCTTTTTGAACTCACGGTGACAGTGTTGTGTTCAAACAGGAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTTGTACGTACATAGAATCCTTTGTCATGTCATTCTACATTAAAGAGAAGACCTATTCTACGGAATTAGAAAAAATAGATTACTACTTGATTTTCACTGGGAACTTTCTGTGTCTGTGCAGATGCAGGATTATTGTTAATGAGAATTCTCTATATTTGTTGTAATTTTTTTTGGATTTTTGTACCTTCGTGTAAAGTTCTACACTTCTGTTCCAATCCAGTCTTACTTTGATAGAGTATCTGTACATTACATGACCTAACAACCCATTTACATCTTTTTAAGTAAGTGATTAAACTTTTTAATGGATTTAGTTATTATATTTTATGATTACCATAGTTTCTTGGTCTTTACTTCTTTCTTTCATTGCTACAAATTTATTGAACACTGTCGCAATTGGCTTATATTTTGAATCTTAGCTTCCTTACACGGCAACTACATTTATTATTTTTGGGAAGTAATTTATATGGAAAAATGTTTGTCAATATTATCTTGTCTAGCTAGTGAATATGGATGGTTATGTACTTGTTATTGCTGCTGATTCCATTTGCCGTATTTATCTTTCTCAAGCGATGACTTGGTTTTAGGGCTTGGAAATTTTATAAGTAAATCCTGATTGGTATTGATGCAGATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCGAAATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTCACCATTTTCCTG</genome_strand>
        <mrna_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCG-AATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTC-CCATTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344222" ref_strand="+" ref_description="SGN-U344222        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | E3 ubiquitin ligase, putative, E3, ubiquitin ligase; contains similarity to anaphase-promoting complex subunit 2 GI:6180009 from (Homo sapiens) | chr2:1624738-1629159 FORWARD | Aliases: F28I8.30, F28I8_30(evalue: 3e-98, score=355) genbank/nr: gi|56744296|gb|AAW28575.1| putative anaphase promoting complex protein, 5'-partial [Solanum demissum] (evalue: 6e-142, score=506)">
      <seq>agaggacaaatacaaatataaaagcaactatcaagcatcaaccacagccagagcaaaaggaccttgatatatctctagataatgttaatgctaccatcatatcttcaaatttctggcctcctattcaggatgaggcaatcaacttaccagagcctgtggagcagctactgactgattatgctaaaaggtatactgaagtcaagacaccacgtaagctaatatggaagaaaaatctgggcagtgtaaagttggagctccaattcgaagatagagcaatgcagtttaatgttactcctttgcatgcttcaattattatgcagtttcaagatcagaaaaagtggatatctaagaatcttgcagctgcagttggagtacctgttgatgtgttgaataggaggataaatttttggataagcaagggaattctggcagagtcaatgggggcagactctgctgatcatgcttttactctggtggaaaccatgaatgatactggtaaaagtggaactattgatggaggctgtgaggagctattggcaggtgaggacgacggagaacgctctgtggcctctgttgaagatcaattgcgaaaagagatgactgtctatgagaaatttatcactgggatgcttaccaattttggcagcatggcattggaccgtattcataatactctcaagatgttctgcattgctgatcctacatatgacaaatctctgcaacaactgcaaagctttttatctggtttagttgctgaggagaagttggaattcagagatggaatgtactttctgaaaaagtgatcaattccatctatattgtctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21768" stop="24845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22068" g_stop="22118" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22119" i_stop="22204" i_length="86">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22205" g_stop="22281" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="128" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22282" i_stop="22843" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22844" g_stop="22963" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="248" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22964" i_stop="23110" i_length="147">
            <donor d_prob="0.275" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23111" g_stop="23199" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="337" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23200" i_stop="23294" i_length="95">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23295" g_stop="23376" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="419" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23377" i_stop="23459" i_length="83">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23460" g_stop="23651" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="611" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23652" i_stop="24216" i_length="565">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24217" g_stop="24285" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="680" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24286" i_stop="24397" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24398" g_stop="24545" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="828" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U344222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22068" e_stop="22118"/>
          <exon e_start="22205" e_stop="22281"/>
          <exon e_start="22844" e_stop="22963"/>
          <exon e_start="23111" e_stop="23199"/>
          <exon e_start="23295" e_stop="23376"/>
          <exon e_start="23460" e_stop="23651"/>
          <exon e_start="24217" e_stop="24285"/>
          <exon e_start="24398" e_stop="24545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAGGTATCGGTTGTAAGTTATTTCTCCTGTTCTTGGGATTCCCACAATTTTAATTAATCTCATCGATTTCTGGATTTGTTCGATTACAGAGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAGGTATGCACTTATTCTTACATTTACTGTCACAATAACTTTATTTACTAGCTATTGGTAGTAAAAGTCTTTACTCATCTAGTGGAACATCTTAATCCAATTTGGACAAGAATCTTTGATGTTAAATATGAAAACATTAAATATGAATTGTGCAAGCAAAATATTTCAAACTGAACTGCTCCATTTTATTTTATTGATATTAGTTGTGTTTTCTCCATCCAAAATAATCATAAATTAATGAGTTCTGAATCCTTTATGTTCACAATTCGTGGTCTTAGTCTGAATTAAGTGAATATCCCCTTAAACATTCTTGATAGTTAAGAACATCTTCCTTGTTGATGACAGAGAAGTGATAGTTACTTTCCTTTCTTTTGGGTCCCCCCACCCCCCCACCCACCCCATGTTGCTCGAACTCCTCAACATGGAGGATCGGCATAAGTGCGTCAACATTTTTAGAGAGTCCGAGCAACATACTTAATAGTGTCAATCGTTTGCCTTTATGTAGCTTTCTTTGTTTTGTTTAGTTTTTGCCAGTAAGTAACAAAATCTGGTACATATATGGCAGGATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAGGTCAGTAACTGTACGGTGTACTTGGGACTCGTGTGACTTTCGAAACTACATAAACAGTTGATTTATAATCTCTAGATCTAAGATCACTATTCTCTGCATCCTTTGATATATAACCAAATGCCTGACTGCATTTTTACCGCATTGTAGTTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAAGTAACTTCGCAATCATCTTTGTATTTTTATTTTACCAATTGTTTCAGAGAAGTATTGGGAATGGATGTAAAGGGTATGTACACCTCATGTTGTAGGTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAGGTTAGTTCCTCTCTTCCATTTTCATCAGTAAATGGTTTTCTGGAGTAAGAATTTATTTGATCTTTTTTCACTTGGTTGACTAGGGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAGGTAATCTTTTGACTTTCTTTTTCTTTCTTTTGCATTCAAATGGATCTTTTAAGTATATGAATCTGATACACTCTCTTAACAGTTGAGTGTAAATAGTAGAAGCCTTTTCTTTTCTGTAAAACTATTTTTTTGTGTATTATTGTGGAAGCTTTGGTTGAGTTGCATTAACATCATCATATAATTAGTCCAGAGTCTCTCTTTGCTAATGAGGTACCTGAGTTTTTGAAATATTTGTGCATAGTTCCCTTAGTGATACAGAAAATAATTACTAGTGGATTTCAAAAGCTTAAACATCAGTTGACAGGGAACTCATTGTGAAATTTTTTGCAAGGCAGGACAGAGATGGCTGCATCTTGGCTTGCCATGTTTTATCTACCATTACCAAACCTTACCGCCAATTGGATGTCTATTTAACAAGTCTGAAATGTTTTTATCTTTAAACATAAATTGGCAAGGGTAGTTCATAGTTCTAAGGACAGAAATCCTTCTCGCAAAGAACTAAGGACAAAATAACAGAAAAGAAACACTAGTGTTATGTTTAATGAGATGCTGGTGTTGACTGCAGAAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAGGTAATTAATTATTTGCTTTATAACTCATAAGATTTATAATTGCTTCAGGAACTATGATGTGGCATGAGGCCATGAAATACCGAAGAATTAAAAGTACTAATTGTTGCTGCAGATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</genome_strand>
        <mrna_strand>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAG......................................................................................AGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAG...................................................................................................................................................TTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAA...............................................................................................GTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAG...................................................................................GGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAG................................................................................................................ATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313171" ref_strand="+" ref_description="SGN-U313171        Tomato 200607 #1 [69 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 8e-85, score=311) genbank/nr: gi|56744294|gb|AAW28573.1| putative NAC domain protein NAC2 [Solanum demissum] (evalue: 2e-134, score=482)">
      <seq>acttctcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatatatttatatgaaggctattggatgaaaaggtgacatcaaaagtttatgacaacaattgtaaaatataatcaaatgttatgtcattagtattattagcaacaaaccttgtagtagggcaacaaattgttgttgtattattttagaatttagtttttcagtttgtatttggaaaaaaaaaactaatttactttgtgaaattttaataaatatttttcagtattcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32390" stop="55838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32690" g_stop="32995" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="587" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34653" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="1347" r_length="760" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34654" i_stop="35245" i_length="592">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35246" g_stop="35271" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1373" r_length="26" r_score="0.731"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U313171" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32690" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34653"/>
          <exon e_start="35246" e_stop="35271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCTATCTTTGATTTTTTTTAAAAAAAATTCTACAATGAAATGTCAATAATTTTACTATTCAATTTTCTTTTCTTTGGTTTTTTGTCTTCTGATTAGTAGCATAAGGATAGTTTACATTAATGAATTACCTAATTTATTAGTATTATTTTTGAAGGAGACTTATTTTTTAAAAGTTAATTATGTGATGTAAATCCGCGTAGAAAAATTAATCATACTCCTAAGTAAGACTTTTCGAATAATATTCAAAATCGAATCGAATTATCCAATTGGTTCATTAGTAAATATTTTTATTAGATTAAGAATTAATTAATATTTATCATTAAAAAATTACATGAATTATCTCTTAGCTAACTTAAGTGTGATACTTTTTGTATGATTATCCCTACCTAACTTAAATTCATATTGAAGTTAATGAATATAATAATCAAGGAAATGAGAGACCAATTTTAAAAAATTAAAAAATTCCACATAAATGAGGAAAATAGAACAAAGCAATAAGAAGAGCATATATCACCACTAGAAAAAAAAAAAAGCTACTTTTTTATTGAAAAATATTTGGTGATTATATACATAATATATTGTTTGAACTAGTGAGAAAAAAAAATATTTCACATAAAAAAA</genome_strand>
        <mrna_strand>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTTTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313172" ref_strand="+" ref_description="SGN-U313172        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 3e-72, score=195) genbank/nr: gi|56744294|gb|AAW28573.1| putative NAC domain protein NAC2 [Solanum demissum] (evalue: 1e-86, score=225)">
      <seq>tttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaaggaaaaatttggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32399" stop="34246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32699" g_stop="33386" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33946" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="742" r_length="54" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U313172" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32699" e_stop="33386"/>
          <exon e_start="33894" e_stop="33946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAA-GAAAAATTTGGGGAGAAC</genome_strand>
        <mrna_strand>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGGAAAAATTTGGGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313170" ref_strand="+" ref_description="SGN-U313170        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 2e-08, score=55.8) genbank/nr: gi|56744294|gb|AAW28573.1| putative NAC domain protein NAC2 [Solanum demissum] (evalue: 1e-31, score=139)">
      <seq>agagttagctatggattttgttgttgtttaatgataaaagtaacttgatagtcgctaattcttgttttaaaaaaaaagttttaatcatttcgctagttaccccaaaaaaaaagaaaattgaaattagctatgaattctatcgttaatctgttgattttctctgtaattgtgatttgacatgtggtctaatagccatgaattattttagtaagggcaaaatagatattttgaagttaagttattatttaatataaaaatgcatcagtattgtttagattgattaaaaaggaaagtgagtcatatatatatatatgaactgggacaaaagaaatattattttatatcaggtgtattattcggatttatttctttcttttgatgaagaattaagctaatattcttttttttcttggctatttttttttttcagttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33164" stop="34439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33464" g_stop="34139" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U313170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33464" e_stop="34139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGAC</genome_strand>
        <mrna_strand>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314535" ref_strand="+" ref_description="SGN-U314535        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxygen evolving enhancer 3 (PsbQ) family protein, extrinsic pII protein; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ) | chr1:4839850-4840748 FORWARD | Aliases: F7A19.23, F7A19_23(evalue: 3e-45, score=178) genbank/nr: gi|53749458|gb|AAU90312.1| putative oxygen evolving enhancer protein [Solanum demissum] (evalue: 5e-87, score=323)">
      <seq>tttttttcaacacaaaaatgaccactttcacaaatcctacaactttgttccatccaaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagagatgttggagactaactcatggaggtatgtattgttttatatacgacttaaatcagcttatcttaaacaggacgtgaagaatgccttatccagggtgcctgaaagtcgaaaagagtcttatattaaaactgtcaatgagcttactgataacatggctgagtttgattactacattcgaacaccaaaggtatatgaatctcgtgtattctatgagaagacgttgaaatcaattgatgaattggtgggattacttgcataataatatcatcaggctcaaaggtgagtgaatgttgtagcagaaaaatcgcgttggtttaacaaataaactgatcgaaaaacgttgaaattatatacaattttaatagacgcaaccaaaaaaaaaaacaaaaaaataatttctgctttcagtttcttcttttgtaaaaccctcactccttttcttccttcttttactacttcctgcttttgcactcattgctttgaacattttccgctttaacttcctttgctgttgtgaactttttcataatggaaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40148" stop="55838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40448" g_stop="40947" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41239" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="702" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41240" i_stop="41920" i_length="681">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41921" g_stop="41955" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="735" r_length="33" r_score="0.657"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41956" i_stop="42219" i_length="264">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42220" g_stop="42244" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="760" r_length="25" r_score="0.720"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42245" i_stop="42661" i_length="417">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42662" g_stop="42786" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="880" r_length="120" r_score="0.552"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U314535" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40448" e_stop="40947"/>
          <exon e_start="41038" e_stop="41239"/>
          <exon e_start="41921" e_stop="41955"/>
          <exon e_start="42220" e_stop="42244"/>
          <exon e_start="42662" e_stop="42786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGTAGCAGAAAAATCGCGTTGGTTTAACAAATAAACTGATCGAAAAACGTTGAAATTATATACAATTTTATGTTCATTTATAAGCTTGGTCTGCGAGTTGATGAAATTGGAATCAAGATTACATACGAGTTTATGAGAGAATAACTATTAGTTGAATAAACGTGATATTTGAAGATGAAAACATTGAAGTAAGGAGGAAATCTTTTCATTATGTGATACAACTGATGAAAATCTTGATACAATGAAATGCAACTGATGAAACTAACATTTACAAACACAATACACACACAAAGGCTAGCAATTGCTAGTGTAGCCAACATCTTCAGCGCCTTGATAAAGCGATAGATGACAAAATTATAAGTATAACCATCAAGGCCATTGCACCAAAAGAACCGATAAGGGATCCAGCAGAACGTTGACAGAAATCTGTATACTGTTGGCATATCGAAAACCAGTTAGTTGAAGTGTTGCCATTGTGTGCCAAATACACAATCGCGGCTGCTGCTGATGCTCCAGATGTGAGGAAAACCAGCATTATCTTCAAAAGTTTTCGCAAAGTATAAAAGATATCAGTACAACATCATAACAAAGTACTAAATATGAAAACTTTAGCAGAAATCTAATGTATTACCGCGTCTAGAACAATGAGCAAAACTCTGCTCTTTCCTGCTCTACTTCTGATAATGTGAAAGATTGAAATAGTGATAGAAAGTGCAAGATATACACAAACTATAGAATTCGAAACCACGAAGAACCTTCAATCAGAATAAGCAAAACAAAAAAATGTGTTAGTTAACCTTTATACTGTTCTATTTCATGTAATAATATGTTTGCAGTTTTGCTTACTTGAACGAGTCGATATCATCATACTGAGCTTCAAAATTTACAATCTGTGTACTGAATGGAAGTGCTTGATCTGCAGTACCCATTGCCACAGCACTTGCTAAGGTTCCAACAAGTGCAACGATACGTAAAACAAGATCAAATACAGAGATTCCTCTGTTCACTCCATGAACTCTTTTGGCCTTTGATCCCTCTCCAGTTTCAATTGATACTGCCTTCATTTTTTCCTTTTAGCTCAAACTTTGAAACTAGAATGAAATTTTGTTGTTATGATTTGTATGTCAAGTGTGATGCGAATTTATACTAACAAGTGAACCAAATCATGTAACAGAGTTACAAATAGTATTAGGTTTTGATGACACATAATTAGTTGTTGCTTTTGCTTATTTAATCAATGAAATGTACAACTTTCTGGTTCATGATATTCCATAAAGTAGTTAAGTCTTGCATTAACTTGCTACACTTTTTACCTGCTCTACTTTCTTCCTAACATGTATTTTGAAAATGTATTTTTTCTCGAGAAAATGTATCATTATATACGAGAAATCGCGATATTAAAACAGCACACGACACGTTGCAATCCATTTGAGAAGGGTAGTATGTATGCATACGTCACTTTTAACTTTATGGAATTGAGAGGTTGTTCCCGATAAAAACTTCAACATTCTTTGTCCTATCTTTTTTTTCTTTTTTAATGTTTTGCAAACACACTTTATGATCATTGATTTATTATATTAGGTCAATTGATAATATACTAATAACAATGGTTATGGTC</genome_strand>
        <mrna_strand>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAG..........................................................................................TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGTAGCAGAAAAATCGCGTTGGTTTAACAAATAAACTGATCGAAAAACGTTGAAATTATATACAATTTTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGCAACCA-AA-AAAAAAAACAAAAAAATAA........................................................................................................................................................................................................................................................................TTTCTGCTTTCAGTTTCTTCTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACCCTC-AC-TCCTTT-T-CTTCCTTCTTTTACTACTTCCTGCTTTTGCACTCATTGCTT-TGAACATTTTCCGCTTTAACTTCCTTTGCTGTTGTGAACTTTTTCATAATGGAAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328295" ref_strand="+" ref_description="SGN-U328295        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane family protein, contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) contains plant integral membrane protein domain, TIGR01569 | chr5:4967014-4968031 FORWARD | Aliases: F8M21.180, F8M21_180(evalue: 3e-46, score=181) genbank/nr: hypothetical(evalue: 7e-86, score=319)">
      <seq>ttcgcatcacacttgacatacaaatcataacaacaaaatttcattctagtttcaaagtttgagctaaaaggaaaaaatgaaggcagtatcaattgaaactggagagggatcaaaggccaaaagagttcatggagtgaacagaggaatctctgtatttgatcttgttttacgtatcgttgcacttgttggaaccttagcaagtgctgtggcaatgggtactgcagatcaagcacttccattcagtacacagattgtaaattttgaagctcagtatgatgatatcgactcgttcaagttcttcgtggtttcgaattctatagtttgtgtatatcttgcactttctatcactatttcaatctttcacattatcagaagtagagcaggaaagagcagagttttgctcattgttctagacgcgataatgctggttttcctcacatctggagcatcagcagcagccgcgattgtgtatttggcacacaatggcaacacttcaactaactggttttcgatatgccaacagtatacagatttctgtcaacgttctgctggatcccttatcggttcttttggtgcaatggccttgatggttatacttataattttgtcatctatcgctttatcaaggcgctgaagatgttggctacactagcaattgctagcctttgtgtgtgtattgtgtttgtaaatgttagtttcatcagttgcatttcattgtatcaagattttcatcagttgtatcacataatgaaaagatttcctccttaaaacccctttttgggaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42608" stop="41058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42308" g_stop="42015" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.358" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41923" g_stop="41800" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="418" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41706" g_stop="41358" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="767" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="783" polyA_stop="793"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U328295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42308" e_stop="42015"/>
          <exon e_start="41923" e_stop="41800"/>
          <exon e_start="41706" e_stop="41358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAAGTAAGCAAAACTGCAAACATATTATTACATGAAATAGAACAGTATAAAGGTTAACTAACACATTTTTTTGTTTTGCTTATTCTGATTGAAGGTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCGGTAATACATTAGATTTCTGCTAAAGTTTTCATATTTAGTACTTTGTTATGATGTTGTACTGATATCTTTTATACTTTGCGAAAACTTTTGAAGATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</genome_strand>
        <mrna_strand>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA...........................................................................................GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG.............................................................................................ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323811" ref_strand="+" ref_description="SGN-U323811        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>aggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttctgcatttcaggaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgattcctgctattgggttctatcctcgtgaacgaaaccccttctgttagttgctagcacagagcttttaagagatcaatcaatagctaattatgatcaaaattcacattcacgtttgcatgctatggtatacactaagaaggcagatttctacttgagcagtgtttaattttcttctcttgcttctctagtgtaggacgtacttgggattgagaattgcttttccgatagttgagtaggcacgaatataatttcagagctttgctatatgtggtaaacctgtgtcttatcttgttaatattcatgctcccttggcctcaaagaaatgacggcgttcctttggcctttaagaaatgatggtgttggtcactgcttgatgtctgatcattttatgtgatcgattctgcaggattgatagaaaatttagttcttatgataaattccaaaggtaagtacttctctttcttgcaaatgttatttcttaccccgtgagaggatacattattttggtaggaacatatacatcctactgtcaaaacatttcaggaggaaagaaagctctataacgtgcattgccaattgctttttgccctttggagcgcttcatgaagggggggttccatgtctacatatgtgttatttcattatttgagaatggattctctttgctctgtgctgtttgataagagttctgcactgtactttgaaagctggtcgtttgtggacggctgagcatagttactctttactgtggcctttgaatggtccattcaaagcgtcgatgcaatagagttcattgaagcgacttattcctggaaataagaaggcgttaaaatattgtcatttctatttggtcccaacaggattcatatgtaaatatactggttttgttgagttcatgttaagaatatttcatttttaatatatatggttttgttttgtggaattcataattagaatatttcatttttaatatatatggttttgttgagttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50643" stop="48882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="49183" g_length="1161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1161" r_length="1161" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1162" polyA_stop="1185"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U323811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1161</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="49183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACACCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</genome_strand>
        <mrna_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAAGAAATGACGGCGTTCCTTTGGCCTTTAAGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACCCCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317780" ref_strand="+" ref_description="SGN-U317780        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | KH domain-containing protein, various predicted proteins, Arabidopsis thaliana and Oryza sativa | chr5:4958340-4962011 FORWARD | Aliases: F8M21.160, F8M21_160(evalue: 1e-131, score=448) genbank/nr: gi|56744290|gb|AAW28569.1| putative KH domain containing protein [Solanum demissum] (evalue: 0, score=740)">
      <seq>gaggtacaacacttctagtaagaccatccatggtcaaaaaaactttttacagccaaaccctagaagcttccctcatttggcaaatttctttatattttcagcagtatttagtactttgaacacaacagacccacggatttctgctttcacagaacacttgatacaggtttgctagacaaacaaaagggtggcacattcagctccttgacatggcaggccagaggaataactacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttctgccaatgcgttattgcaagtacttatgcggttgagggccaatgcatttgagatggagggatcttttcctgcattttctcctggcctttcttatgcccccatgcctgcaagcgtgccagatggctcaagatatggtaaccgtgataatcgatcacgtcggcatggttattcatcttattcaggtggacatgattacagtgatttgtctccaagggatagttatggtggctcacaggttggtaatggaggcaattatgcaccatatggcgtttattcctctgggcgacctagtagttcaggggtttccagccataatccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagaccattgcccgaccctattgacgaagcctccagcctaagaacagaggaccagacgagcaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaatgaaacaacacctcttagtcattgaaggccttttgtacccaaaatacctttgctttagcagtattgtgtagcagactaagtcatgacagtttgatatggtggttcttctttactttgtgtttgtttgtttgtgttcttaagtacctttgtgacgtagtggtgtcacttttactgttgaccagttatgctacaggattgaaactctccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="56142" stop="50030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55843" g_stop="55687" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="186" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53609" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="785" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="1181" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1182" r_stop="1436" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51573" g_stop="51316" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1437" r_stop="1693" r_length="257" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1694" r_stop="1758" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1759" r_stop="1834" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50691" g_stop="50330" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1835" r_stop="2196" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2199" polyA_stop="2213"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U317780" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2196</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55843" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTACAACACTTCTAGTAAGACCATCCATGGTC-AAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCT</genome_strand>
        <mrna_strand>GAGGTACAACACTTCTAGTAAGACCATCCATGGTCAAAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACT................................................................................................................TGATACAGGTTTGCTAGACAAACAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTT-CTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG.....................................................................................................................GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343241" ref_strand="+" ref_description="SGN-U343241        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:6036204-6038108 REVERSE | Aliases: MRG7.22, MRG7_22(evalue: 3e-13, score=72.4) genbank/nr: gi|56744288|gb|AAW28567.1| hypothetical protein PGEC132D05.10 [Solanum demissum] (evalue: 2e-63, score=245)">
      <seq>caaagcagacatttttattccttcaaagttcatttccagtctcttcactccaataattcaaacatttgtgcagttaattaggacacttgaagtagtcctaagaagtgaggggaaaactcacgctcttggtaaatacatgaagagatggagtagttactagagttgcaccctttacgctgaaaatcgagagctggtgagcatcaattgctagggatggcagaggctcaacttcatcccgatctgacagtagtgactgtgattcaatcaccaagtcccattcatcttatcgtagcttcccaagtcgccgtttctttatgtcaaaacccatacatcctctgtcatttccaactgaaacaacacctagaagagaagctattgacagcctctcagcaggttttctcgaatttgatgcctcaacatcacaaagagataaacaccgcttgagcagtgctagtggcagtcttgacttaacagaggcttctgaatcttttcattctgacttcctaagtaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59293" stop="65366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59593" g_stop="59659" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59660" i_stop="60830" i_length="1171">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60831" g_stop="60956" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="193" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60957" i_stop="64745" i_length="3789">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64746" g_stop="65066" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="515" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U343241" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59593" e_stop="59659"/>
          <exon e_start="60831" e_stop="60956"/>
          <exon e_start="64746" e_stop="65066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTTGTAAGCTTCCCTCAACACCCTTTTAGCTTTACTGTATTTCTATGTCCAATTTTTCACTTCAATGAACACATATCTCTAATCTTGATTTTGGGGTTCTGGGAATTTCATTTCGAGTAAATATTGTGTCTTTATGTTTTCTTTTCTTTTTCATTTGGTGTTTGATGATCAAGATCAGTTTTTGAGGTGTTTTTGGAGATGGGTTTTGGTTTTTACTATGTGGGGTTTCTAATAATAATGTTGTTATAAGGTTATGATTTTGGTTTTTGAGTGGTTTGGTATTTACCTTCAGTTTAACTCTTTGTTTTGATGGATTTTTATGTAGTTGTGGTTTTCATGGTTGACTTGTAATGATTGTGTTTCCTTAGATGAAAGTTGTTTACTGTTTAATGTTTGTATGCGCTGCTTGTGTTCAAAAATGAAAAATGAAATGGCTTGAGGACCAAATAGACTAGCATTTGTTTTCTTCAGTTTCTCTCTTCCAACTTGTGTTTTGAGTGAAATTATGGATTTTGCTGTCCTTGATCAATTTAGGATTTGGGTGTAGTTGTTGATTAATTGAGTTAAGTGACCAAGTACAACTCACAATTGTAACAGAGATAAAAAGTTATGAGTAATCATGCTAAGTATAATATACCTCAATAGGGATTTAGTTACGAAGTTGTTCACATTTTTTTGGAAGAATGTAACAATTCTGATGACCTTCCTTCTGGTGTGAATTGGACCCATATAGCTCCTCAACATTGACCATAGGGAGAAAGCTTCAGTGGCTTCGTGTGTCACCTTGAAGAACAGTTTTTTATGCCATTTCTAGCTTTGTTGTGTCGCCTTGCATAACAGTTCTGTATGCCATTTCTTGCTTTCATGTTATGCACCTTCGTGTTACTTATATTTATTTGCTATGTTTGTTGCACTTAATGTTTTTCCTTTTTCTAGTCCAGCCTGTTAACTGTGGTAATCATCTATGTTCTGTCCTGACCTTTTCCGTTTTATGAATGTTTATTGGTGATTATCAAGCTAGTGAAGGATGATACTGTTATCAACTTTACCTGCATGTTATTTTCTTGCATCCGTGTAGTTCAGTTTTGTCTGAATTCCTTGGAGATCTAATCATGTCATGCTTGTATGCTTTTCAGTGGAATTGTTGTATATAATTGGTATATGCACATACCAGGTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTGGTGAGCATTGTTAAATCGTGTTCCCTTTGTTGTGTTGCTGAAACTGAATGGAGTAGTTACTAGAGTTGCTCTTTATTCTGAAAATTGAGAATTGAGAATTGAGAGAAGCAAGTACCAACATAATACTTGTGAGTCTTGTGAAACATAGCTAAGACGGGGTCCCTTTGTTGTGTGGCTGCAAGGCCACATGGGTCCAATGCAGCTAGTGGAGAATGGTCCATGGGGCCACATGAGCCTTACTGGCGGACTAATTCAAGCTTCTCCCCAGCACCATCCAGATGGGATTTCCGCTTCCAACCTGAAACATTATCCTTTGGCTCTAATGATGGAGTTCAATTGTATGGATCTTCTGCTTCATCAAACAGTAGAGATAGTAGAAGTTGGGTGAGGGGGAACCAATTGGCCAATCACCAATATGTCATATCAGATGGTGTTGGTGCATACTGTAGTAGCCCATCGGACATCTCTCCGGCACAACAGTGGACTCCACCAGCTATCCAAGAAATCAACATTGATGATTTTGGTACTTCAAGAAGGGGTAAGCATACTGATTTTGCAACTTCTTTTTTTGTATATAATGAACTTCCAAGGATGCTTAGTTGGGTTTCGGTCTCTTACTTTCATGTACTACTTGCTTTCTCCATTACTAGCTTCATTTATGTTGACTAAATAATCAGCTGATTGTTTTTTCATATATATGTACATAATTTTGGATGTGATTTGCGTGGAGTTTGATATAAGGTTCTCATTTGTCTGTTTCTGCTATTCTGTATTGCTTGTAAATGGGGATTTTCTATGGGACACTGTAATTTAAGGTAATTTTGACTTGGTGTCAGTCTAAACTCTAAAATGCATAAGTATTCAGAATTTTCGTGCAAAACTAATTTTGGTATCCTGCAGCTCCTTTGTCGTATTTTTATGTGCTCTTTAGTTGGGGTTTTGGTGCAGTTCATGAGCTGATTTTCTTAGTTTAAAATTGAAGGAAAAAACGTACTATTTGTTGATGATATTGGAATTAGGTCTGTTTAAGATAATAATTAGAATGTTGTACTTGAAAAAAAAGAGTGTATTCCCATCATTAGTCTCATCGATGTGTTAGTATGTACCTTTGAGTCTCTAATTATCTTTGGCTGGACCTTCGTAAGCAAATTGTATATTGTATAATCAATGAGATGGGGGTTAGCCGTTGGTGCATAGCCATGGTAGGAGGCGCAATGCCTGTGCAGAACTAATTTTGGTATTCTGCAGCCCCTTTGTCGAGTCTTTATGTGCTCTTTAATTGAGTTTTTGGTGCAGTTCATGAACAGATTTTCTTCATTTAAAGTTAATGAAAAATGTACAATTTGTTTATGATATTGAAAGTAGGTTAGTTTAAGATAATAGTTAGAAAGTGGTAGTTGGACAAAAAGTGTTTGACTGGTTGGTAATTCTTGACATGATGTCTATTGATGATAAGGTAGCAATTTTGTGTTAGCTGATCTGGATTTTTGAGGTAATAAGCTTTGCTGTTCAGTGTAATAAATTGGGATGCGGTTAGAAGGACAAGTAGTTCTAACATATTAACAGAGAATTCCATCGTTTGGTTGGGTGAGTTGGCACAAGTAGTGCATTTCTGTCATGTCCTAAACCCATGTTAGGTAGACCAACACTCGGTGCCTTGATTTGATCGAGCGAATCAGCTTTACATGATTGTATGTGCTAGGCATATTAAAAGAATATACACAATGCCTCAGAATTCAACATATACGAGCAAGTACTTCTTTTATACATATGGAACCCCAAAACAAAATAACTAGGTCTATGAATTACCCAAAATACATAGGGCAATACTAGAGATTTACCGAAAATACATGATCATGCTCTGAACATACTAGTCTATGAAGCCTCTACTACATGCCATGAACTGAAAAAGTTTTGGGACTATGCCTTGGCATACCCAAAAGGCCAAACTATCTATGTACATAGCATGAAACATGATAAAGGCCCTCAATAGTAGTGGGACTCACCAAAGGCATGTGAAAGAGAATGAAGTACCACAATTCTATAATGCATCTAAGAGAACATAAGAGTATCCTAGACTTCAAAGTAATACCTTGAATATCAGAAGCAAATGTAACTGTAAATGCTTTATGTGGAAATGCTTTTTGTAGTACTTGAAATCTATAACTTTGAACATACATAGAGCTTTTATGTAACTTCATACTTTGATCTTAAATCATAAATATAACTTTTCTGGAAACATCATAATTCTTTGGAAACAGATATATTTCTCATGGGCAGATCTTAGTCACTGTCATAACTCATGAAGCATACATGATAATTCACCATGTGTACTGCATGCATTCAATCAACATCTGAATGGCTGAGCCGACCTACCACGATGCTGTGTGGGTCCGATGCTGTTTGTATATGACATAAGCATAATCTGTATCCTAACTGAAAGAATCCAAACCAAAGGAAACTGTCTACTCCCCATTACGACTCTTTACACCAACTTATGTAGACTTAGGTGTTGGATTCTTTTGGCAACACCTTCTCAATATCTAAGGGTGCTCTCAAAACATATATTGTATAACTTGACACTTGTCCCTATTATAGAATCAAATCTGTGCCTCATTGGCCCTTTTGTCAAGTTATAATATATAGCTCAGTGGTCTATGATATCAAATCATAATCTGTGGCTCAATAGCCTATAGTATCTGTAGCTCAATAGCCTAAAATATCAAATCCAATCTGTGGCTCAATAACCTATGATGTCAAATCATAATCTGTGGCTCAATAGCCTATAATATTTGTGGCTCAGTAGCTTGAAATATCAAACCAAATCTCTGGATCATTAGCTATTCATATATCTCTAACATCATTTTATGAATCGTAACTTAAGTAAGGAAGACACTAGAAATATCATGTAAATCTTTTAAGGAACACATGAATCTAATGAATGCATAGGCATATAGAATATTAAGGGTAGATATGTGGCAGAAATGTCAAATTTGTATCCGACAAAGTAGCGGTGAGATGAAATCTTGGAGACCTCGAGAGATGTTTGGCCATTACATCAAATAAAGTGACAACCTCTTAGGTACCATATTTACTTTAATTAAAAACTCTTTTAAGTGACATTTAATCTATTTCATGAGTCATAGTATGCTTAAAACACCAAAATGTTTAGTTAAAGAACACTTACGAATGCCCCCTGGGCTTTGGTTTAAGGGCAATGCATTGCTATACTAGATGTGTGGGAGGCGACATCTAGAGTTCAAATTCTAGTTTAGTATTTACAGTAGAGATGAAGATCATCATCCACAATCTTAGGATCTTGATGTTAAAAAAAAGAGGAGAGTACTTGTTAAAAAAAAAGCGAGACCAGAGTAACCAACATCAAACAACATATAAAAGCCAATCCATCTCCATATGATATTGAATTATGTTTTCATTACAGTTATTGCGAGCGTGCTCTCCCCTTTGGACTTTGGTGATGTCTAAGTTAATGGTCGCTTCATGTTGAGCAGAGTCAAAGTTAGCAAGTTGATATGCTCAAAGAATCAATTCTGTTAATGCTCTTGGCACATTTGGCATTTTGGTTTCAACCAATGCTTTGTCATTCTGGATATTTTGCTGTACTGATTATTTTACTGTATTTTTTGCTTGGTAGATGCAATTACGAGGCCATTTTCATTTTCACCTACAATGGAGGTATGCATCTGTCTTGCTTTTCTCCACTAACTCCTTTCTTTTGAAGTTTGTAAGCTAAATACAGCTTTCTTATGACAATAAATTTCTTGACAGG-GAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</genome_strand>
        <mrna_strand>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340591" ref_strand="+" ref_description="SGN-U340591        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:6036204-6038108 REVERSE | Aliases: MRG7.22, MRG7_22(evalue: 2e-15, score=79.7) genbank/nr: gi|53749466|gb|AAU90320.1| hypothetical protein [Solanum demissum] (evalue: 7e-87, score=311)">
      <seq>ctttttcaagtgcatacacaatttccaccacattacattttacaacatgattaagccactaaagattctaaacaggagaagttaagacgattaggacaccaaccacgaaaggccacggacatcagcctgcaattatatacaaaattcagttgttacttcagcccggaacctgctgatgcttttgaagatcccaccattgcatgatcaactgatccaataaaaagctgtgacgaaaatgtattagtttttcttaatttaccaggaaaatccttgcctgaatcacctttcaaagaaagatttttcctaattcggttcttgtttagtgagagcatagtgccacgagatggtccgtgcaaagccccctcgacacaatcaccagaatgggcacaaccccaaggcttggatggtccttcttcactgaatggtttaagcctaggaaagaacttggagaaaactcgctgctctggagaactaccttcttcaagcttggcacagattgggcatggaggatcacttttacatgattttggtgtagcttgctccaaacattcagcatgaaatacatggcggcatgaaaggaccccagcaactggcatatctccacttctcacaattcgtcgggaactccaaggcgatctttgtgaaagaacctctcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="66058" stop="64799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65758" g_stop="65099" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-U340591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65758" e_stop="65099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCAAGTGCATACACAATTTCCACCACATTACATTTTACAACATGATTAAGCCACTAAAGATTCTAAACAGGAGAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTTACCAGGAAAATCCTTGCCTGAATCACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCACGAGATGGTCCGTGCAAAGCCCCCTCGACACAATCACCAGAATGGGCACAACCCCAAGGCTTGGATGGTCCTTCTTCACTGAATGGTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACATGGCGGCATGAAAGGACCCCAGCAACTGGCATATCTCCACTTCTCACAATTCGTCGGGAACTCCAAGGCGATCTTTGTGAAAGAAACCTCTCGCAT</genome_strand>
        <mrna_strand>CTTTTTCAAGTGCATACACAATTTCCACCACATTACATTTTACAACATGATTAAGCCACTAAAGATTCTAAACAGGAGAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTTACCAGGAAAATCCTTGCCTGAATCACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCACGAGATGGTCCGTGCAAAGCCCCCTCGACACAATCACCAGAATGGGCACAACCCCAAGGCTTGGATGGTCCTTCTTCACTGAATGGTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACATGGCGGCATGAAAGGACCCCAGCAACTGGCATATCTCCACTTCTCACAATTCGTCGGGAACTCCAAGGCGATCTTTGTGAAAG-AACCTCTCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328832" ref_strand="+" ref_description="SGN-U328832        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expansin, putative (EXP15), identical to SWISS-PROT:O80622 alpha-expansin 15 precursor (At-EXP15)(Arabidopsis thaliana); alpha-expansin gene family, PMID:11641069 | chr2:916853-918642 REVERSE | Aliases: T17M13.26, T17M13_26(evalue: 3e-71, score=266) genbank/nr: gi|30519754|emb|CAD90261.1| expansin12 [Lycopersicon esculentum](evalue: 2e-86, score=322)">
      <seq>ggggtttatggttatggtggaggaggttggattgatgctcatgcaactttttatgggggtggtgatgcttctggaacaatgggtggggcttgtggatatgggaatctttatagtcaagggtatggcacaaatacagcagctttaagtactgctatgttcaacaatgggttgagctgtggttcttgttttgaattaaggtgtgtaaatgacagacaagggtgtttgcctggttctattgtggttactgctacaaatttttgcccaccaaacaatgccctccctaataatgcaggtggctggtgtaatcctccacttcaccattttgacctctctcagcctattttccaacacattgctcattacaaagctggaattgtccctgttgcttatagaagggtaccctgtagaagaaggggaggaataaggttcacaatcaatggacactcatacttcaacttagtactagtaacaaatgttggtggtggtggtgatgttcattcagtagctgttaaaggatcaagaacaggttggcagccaatgtcaagaaactggggacaaaactggcaaaacaacaacaaccttaatggacaaacactatcatttaaggttacaacaggtgatggtagaagtttgatctcatacaatgttgcacctgctcactggtcatttggacagacatatactggtgctcaattccactaaaaaaaggcattaaatggggttttttttttcttcaagtttttgaaagtatatttactagaattactattatcattactagtattagtatgcatactgatttggtcactagtattagtattgtgactatttagtatagaggtattttggttgtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttactttggggaccctaatttttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccncccccagttggtaggtgggggtatttttggcaactttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagaaccntttaactagtaatgattcagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacnggttncaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83968" stop="86812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84265" g_stop="84346" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84347" i_stop="84438" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84439" g_stop="84751" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="395" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84752" i_stop="85628" i_length="877">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85629" g_stop="86509" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="1252" r_length="857" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1258" polyA_stop="1283"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U328832" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1276</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84265" e_stop="84346"/>
          <exon e_start="84439" e_stop="84751"/>
          <exon e_start="85629" e_stop="86509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGGGTATGCAACATTTCCTTTAAATTCCCCAAAAGTTTGATTTTTGAGTAAATTTAGGGTATAAATTTGTGCTGATTCTTGATTTCTTTGAATAGGTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAGGTAAATTCTTGGTAAAAATATGTTAGTTGTAGAACTATATGCTGTTTGTATCTTGCTATGTATGTATGATGTTGTTTGAGTACTATAAAAGAGTGGCAAGGAGAGTTTTGTCTTTTCACAAATGCTAAACCTTAGTCATGTCTAAATTGCTTAAGCCCAAAGGTTTGAAATTTCTAAATGGTCCCTTTTAAATGACCTTAATTTACTTGTGCATGCTAATAGAAAAATGAAATGGTGGAACCACATGGTGTGGACCCTTTTGATAAAGGTTTTAACTTTATCACAAGAAGTTTCCCATTTGGCTATTTTCAATGGAGTACTCTTTAGCATTTACTTCTTTCTTGGTTGTTGTAATAGTAGAAGATTCATAAAGTTACATATATTGTTCCCATTTGTCTCTTTACTTGTTTCAATTGTGCTCTTTATCCTTGACTTGTTTCTTAAATTTGGTAAAACTTGGAAAAGCATGAGAAACAAAGTTACAAACTTTAACACCATATAAAAACATAACATAACCAATCTTGCAAATTTTAATAGCTTAGTTTGTTGACAAGCCATACCTTTACCCTATGAACAATCTTGATAATCTTATTAGCTTAGTAAGTTGACTATCTGAAGTTTCACGTTTCGACAAATCTTGTTTATTTTAGTAGCTTAATTGTCTCACTATCTAGACTTTCATATTATACAACCAATCTTAGTTGTTAGAATACCTGAACTTTTTATGTTATGACTAATCTTGACAATCTCAGTAGCTCAATTGGTTGACTCCCTGAACTTTTCATGTTATAACTAATCTTGACAATCTTAGTAGCTTAGTTAGTTGACTATCTGAATTTCCATGTCTCAACTAATCTTTTGTCGAAATAAATTACAGGGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GGGGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG............................................................................................GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTAC-TTTGGGGACCCTAATTTTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCNCCCCCAGTTGGTA----------------------GGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCNTTTAACTAGTAATGATTC-AGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339319" ref_strand="-" ref_description="SGN-U339319        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttacttttggggaccctaattcttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccacccgcagttggtaggtgggggtgggggtggggtggggtgggggtatttttgggcctttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagacccatttaactagtaatgattcaagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacaaacaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85785" stop="86815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86085" g_stop="86509" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U339319" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86085" e_stop="86509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGG-GCCTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGACCCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345729" ref_strand="+" ref_description="SGN-U345729        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | mitochondrial transcription termination factor-related / mTERF-related, contains Pfam profile PF02536: mTERF | chr2:899689-900945 REVERSE | Aliases: T17M13.22, T17M13_22(evalue: 3e-77, score=285) genbank/nr: gi|53749462|gb|AAU90316.1| putative mTERF domain containing protein [Solanum demissum] (evalue: 3e-133, score=478)">
      <seq>ccttacttcaactgactgtggtctcaaattcagggagaaaatactctatcttcaagaactcaatatcaatcccagtaaagttcttcaactaaacccccatttacgatcagcaacgctcgattcaatcagatctgttgaagtatgtctgttttcaatggggattgaacggtcggcaattggtcgaatacttgatatgcatcctcagcttttaacctccgacccatatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgatgtccgagaattcttgtttgtagtgttgaagatcaattgaaacccacatttgagtttttgaaggaatttgggtttgtgggtcagaatcgaattacttgtcagactactgttttgcttgtgtccagtgttgagctaactttgaaccctaaaattgattacatgttgagtttgggatttgaactcgatgatgtggctaatatggttttgagatcacctgggttgttgacatttagtattgagaaaaactttaggccaaaagttgagtattttttgaaggagatgaatggggatataagggaattgaagaggtttcctcagtacttttcgtttagtttggagaggaagattaagcctcggcataggcttttggtggagcatgggtttacgctgtctttatcggagatgttgaaggttagtgatggagaattcaatgccagattgatttgaatgcgattgaggttagtggatgataagcaaatgtagtacgtaattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91311" stop="92714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91611" g_stop="92414" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-U345729" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91611" e_stop="92414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</genome_strand>
        <mrna_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTTGAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10611" PGL_stop="7969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10611" e_stop="10221"/>
            <exon e_start="8854" e_stop="7969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="10611" e_stop="10221" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8854" e_stop="7969" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10611" stop="10221"/>
              <exon start="8854" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</gDNA_template>
            <first_frame> L  D  H  *  L  N  E  S  P  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R  F  D  F  Q  I  L  F  P  L  I  D  L  E  L  Y  L  C  C  I  L  V  C  V  E  K  P  S  V  L  L  Y  S  L  L  *  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q   </first_frame>
            <second_frame>  W  T  T  S  S  M  K  A  Q  E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K  G  S  I  F  K  F  C  S  L  *  L  I  L  S  Y  I  Y  V  V  S  *  C  V  L  R  S  Q  V  C  F  F  T  P  F  C  R  N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  </second_frame>
            <third_frame>   G  P  L  A  Q  *  K  P  K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  R :   L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  V  R  F  S  N  F  V  P  F  D  *  S  *  V  I  S  M  L  Y  L  S  V  C  *  E  A  K  C  A  S  L  L  P  F  V  G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10610" stop="10221"/>
                    <exon start="8854" stop="8312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTTSSMKAQEFNDGRRAHTTKLAVTAMSATAAETATFPVDLIKTRLQLHGESLVSSRRTSAVRVVAEILRNDGVLGLYKGLSPAIIRHMFYTPIRIVNYEFLRNFLVPADHTLSLSSKAIIGGISGVIAQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10585" e_stop="10221"/>
            <exon e_start="8877" e_stop="8542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10585" e_stop="10221" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8877" e_stop="8542" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10585" stop="10221"/>
              <exon start="8877" stop="8542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : TTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCT</gDNA_template>
            <first_frame> K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  S :   C  I  T  S  C  D  S  G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E   </first_frame>
            <second_frame>  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : V  A  L  L  L  V  I  Q  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  </second_frame>
            <third_frame>   E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  L  H  Y  F  L  *  F  R  L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10281" stop="10221"/>
                    <exon start="8877" stop="8543"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYTFSVKQSYYWWNIWSYCSVALLLVIQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10583" stop="10221"/>
                    <exon start="8877" stop="8860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFNDGRRAHTTKLAVTAMSATAAETATFPVDLIKTRLQLHGESLVSSRRTSAVRVVAEILRNDGVLGLYKGLSPAIIRHMFYTPIRIVNYEFLRNFLVPADHTLSLSSKAIIGGISGVIAQLHYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11569" PGL_stop="12429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11569" e_stop="12429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="11569" e_stop="12429" e_length="861"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11569" stop="12429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAGCAAAACATTTCCAATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</gDNA_template>
            <first_frame> V  *  A  V  G  N  T  I  A  P  P  Q  R  R  L  F  L  L  R  K  L  I  K  *  S  P  K  R  C  I  E  V  E  P  P  Y  *  H  P  N  H  *  E  L  Y  Q  R  *  A  D  N  L  F  I  *  N  R  *  S  S  L  I  F  *  E  I  P  V  L  L  L  K  Y  L  R  L  I  I  I  V  S  Q  R  G  E  I  T  V  I  F  S  K  T  Q  M  G  I  *  I  I  T  R  T  I  R  V  L  *  I  N  *  T  G  R  I  R  N  G  R  I  I  S  S  Y  L  V  A  R  K  A  A  G  V  I  V  E  I  L  G  E  *  S  R  T  L  V  R  F  M  S  K  K  L  E  L  N  F  K  N  *  R  I  P  K  G  F  S  R  T  H  M  R  K  M  R  T  F  H  L  G  M  L  M  F  H  L  E  M  N  F  S  K  Q  L  G  E  T  M  I  S  G  L  E  R  I  I  K  V  I  *  F  I  I  E  M  I  V  V  P  G  L  R  E  V  *  K  L  S  R  V  K  M  E  Y  M  D  T  I  N  R  I  *  M  G  E  T  V  *  R  H  S  R  I  S  M  A  I  T  *  E  T  L  E  C  L  S  K  T  F  P  I  M  T  L  E  M  *  G  M  F  N  L  S  I  H  K  M </first_frame>
            <second_frame>  F  K  Q  S  E  T  P  L  L  R  R  S  A  A  F  F  C  C  V  S  S  S  N  N  R  Q  K  D  V  *  K  *  S  H  H  T  D  I  Q  I  I  E  N  S  I  K  G  K  Q  T  I  S  S  F  R  I  V  K  V  R  *  F  F  K  K  Y  Q  Y  C  Y  S  N  I  *  D  *  *  L  *  *  V  K  G  G  K  *  Q  *  F  S  A  K  P  R  W  G  F  E  L  *  L  E  Q  Y  G  F  F  E  *  I  K  L  E  G  S  G  M  G  V  *  S  A  V  I  S  *  H  A  R  R  R  E  L  *  W  K  F  *  E  N  R  A  E  P  *  *  G  L  *  A  K  N  *  N  *  I  S  R  I  K  G  Y  Q  R  V  S  A  E  P  T  C  E  K  *  E  L  F  I  W  V  C  *  C  F  I  *  K  *  I  S  A  N  S  W  E  K  Q  *  F  R  V  S  K  G  L  S  K  *  F  S  S  *  *  K  *  S  *  F  Q  V  *  G  R  F  R  S  S  V  E  S  K  W  S  I  W  T  L  S  T  E  F  K  W  G  K  Q  C  N  V  T  A  E  F  Q  W  Q  L  H  E  K  R  W  N  A  S  A  K  H  F  Q  L  *  P  W  K  C  K  E  C  S  I  *  V  S  T  K   </second_frame>
            <third_frame>   L  S  S  R  K  H  H  C  S  A  A  A  P  P  F  S  V  A  *  A  H  Q  I  I  A  K  K  M  Y  R  S  R  A  T  I  L  T  S  K  S  L  R  T  L  S  K  V  S  R  Q  S  L  H  L  E  S  L  K  F  V  N  F  L  R  N  T  S  T  A  T  Q  I  S  E  I  D  N  Y  S  E  S  K  G  G  N  N  S  D  F  Q  Q  N  P  D  G  D  L  N  Y  N  S  N  N  T  G  S  L  N  K  L  N  W  K  D  Q  E  W  A  Y  N  Q  Q  L  S  R  S  T  Q  G  G  G  S  Y  S  G  N  S  R  R  I  E  Q  N  P  S  E  V  Y  E  Q  K  T  R  T  E  F  Q  E  L  K  D  T  K  G  F  Q  Q  N  P  H  A  K  N  E  N  F  S  S  G  Y  V  N  V  S  S  R  N  E  F  Q  Q  T  V  G  R  N  N  D  F  G  S  R  K  D  Y  Q  S  D  L  V  H  N  R  N  D  R  S  S  R  F  E  G  G  L  E  A  Q  S  S  Q  N  G  V  Y  G  H  Y  Q  Q  N  L  N  G  G  N  S  V  T  S  Q  Q  N  F  N  G  N  Y  M  R  N  V  G  M  P  Q  Q  N  I  S  N  Y  D  P  G  N  V  R  N  V  Q  S  E  Y  P  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11628" stop="12428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHQIIAKKMYRSRATILTSKSLRTLSKVSRQSLHLESLKFVNFLRNTSTATQISEIDNYSESKGGNNSDFQQNPDGDLNYNSNNTGSLNKLNWKDQEWAYNQQLSRSTQGGGSYSGNSRRIEQNPSEVYEQKTRTEFQELKDTKGFQQNPHAKNENFSSGYVNVSSRNEFQQTVGRNNDFGSRKDYQSDLVHNRNDRSSRFEGGLEAQSSQNGVYGHYQQNLNGGNSVTSQQNFNGNYMRNVGMPQQNISNYDPGNVRNVQSEYPQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13324" PGL_stop="13880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13324" e_stop="13880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13324" e_stop="13880" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13324" stop="13880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAGGTAATACTTAGTATATTACTTTTTTTATT</gDNA_template>
            <first_frame> R  L  L  S  S  W  T  H  V  V  W  M  N  S  Q  R  Q  V  F  W  L  *  K  H  Q  T  S  L  R  R  K  R  R  R  N  L  L  K  V  F  L  R  L  E  A  K  F  M  N  I  V  R  E  I  G  H  I  P  I  M  R  R  Y  M  H  C  L  G  V  *  S  S  *  *  R  R  T  V  I  Y  Q  R  R  S  L  C  Y  M  M  *  T  K  K  L  K  R  T  L  *  W  L  T  A  R  D  W  L  L  L  K  V  L  *  I  A  L  H  D  H  Q  S  G  L  *  R  I  C  V  S  V  V  I  A  I  M  H  *  R  L  L  Q  G  L  S  V  G  K  L  S  C  E  M  L  K  D  F  I  I  *  K  M  D  C  A  R  V  R  I  I  G  E  D  P  D  L  Q  V  I  L  S  I  L  L  F  L   </first_frame>
            <second_frame>  D  C  *  A  P  G  P  M  S  F  G  *  T  V  K  G  R  F  F  G  C  K  S  I  R  H  R  Y  G  E  R  E  E  E  I  C  S  K  S  S  *  G  *  K  Q  S  S  *  I  S  C  G  R  *  V  T  S  R  S  *  E  D  I  C  I  A  *  G  F  K  A  A  N  E  G  G  R  L  Y  T  R  D  E  V  C  V  T  *  C  R  P  R  N  *  R  G  R  F  N  G  S  Q  R  E  I  G  F  C  S  R  S  Y  E  *  L  C  T  I  T  N  P  D  Y  K  E  S  A  C  L  W  *  L  P  *  C  I  K  D  C  F  K  A  C  R  S  G  N  Y  H  A  R  C  *  K  I  S  S  F  K  R  W  I  V  L  V  *  G  L  L  V  K  I  L  T  F  R  *  Y  L  V  Y  Y  F  F  Y  </second_frame>
            <third_frame>   I  V  E  L  L  D  P  C  R  L  D  E  Q  S  K  A  G  F  L  A  V  K  A  S  D  I  A  T  E  K  E  K  K  K  S  A  Q  S  L  L  E  A  R  S  K  V  H  E  Y  R  A  G  D  R  S  H  P  D  H  E  K  I  Y  A  L  L  R  G  L  K  Q  L  M  K  E  D  G  Y  I  P  E  T  K  F  V  L  H  D  V  D  Q  E  T  K  E  D  A  L  M  A  H  S  E  R  L  A  F  A  Q  G  L  M  N  S  S  A  R  S  P  I  R  I  I  K  N  L  R  V  C  G  D  C  H  N  A  L  K  I  A  S  R  L  V  G  R  E  I  I  M  R  D  A  K  R  F  H  H  L  K  D  G  L  C  S  C  K  D  Y  W  *  R  S  *  P  S  G  N  T  *  Y  I  T  F  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13326" stop="13835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVELLDPCRLDEQSKAGFLAVKASDIATEKEKKKSAQSLLEARSKVHEYRAGDRSHPDHEKIYALLRGLKQLMKEDGYIPETKFVLHDVDQETKEDALMAHSERLAFAQGLMNSSARSPIRIIKNLRVCGDCHNALKIASRLVGREIIMRDAKRFHHLKDGLCSCKDYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16571" PGL_stop="18567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16571" e_stop="16985"/>
            <exon e_start="17621" e_stop="17710"/>
            <exon e_start="18336" e_stop="18567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16571" e_stop="16985" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.823">
            <gDNA_intron_boundary i_start="16986" i_stop="17620" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17710" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.981">
            <gDNA_intron_boundary i_start="17711" i_stop="18335" i_length="625"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="18336" e_stop="18567" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16985"/>
              <exon start="17621" stop="17710"/>
              <exon start="18336" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAG : GAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTT : ATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCGAAATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTCACCATTTTCCTG</gDNA_template>
            <first_frame> Q  S  T  I  Y  L  N  P  K  P  H  F  F  L  S  L  *  V  S  F  C  R  V  *  L  N  Y  K  S  L  Y  A  *  F  L  I  N  *  G  F  F  S  A  G  K  V  D  F  *  I  I  S  S  K  L  C  K  S  F  T  N  D  V  R  Y  V  F  I  G  M  R  F  G  E  I  G  V  V  E  *  *  F  H  N  S  D  I  G  K  L  E  W  L  L  L  F  F  R  S  S  S  Q  R  Q  W  *  F  V  I  Q  R  *  V  C  N  A  S  E  E  S  L  Q  T  W  P  F  I  S  S  *  T  T  L  P  S  L  H  *   : G  N  F  *  E  K  W  S  K  K  V  L  E  L  F  *  T  L  Q  K  C  C  T  I  *  N  *  *  G  S   : Y  S  R  R  R  N  S  A  N  N  M  *  S  F  G  R  N  I  I  S  K  A  V  P  G  E  V  P  I  I  V  G  S  C  F  T  V  L  *  R  R  Q  I  A  R  T  S  E  P  R  F  Y  S  S  L  S  P  L  E  I  S  T  N  C  V  F  S  S  I  G  *  P  S  S  P  F  S   </first_frame>
            <second_frame>  R  A  Q  F  T  *  T  Q  S  L  T  F  S  S  L  S  K  S  P  F  V  G  S  N  S  I  T  N  L  Y  M  H  D  F  *  S  I  R  V  F  S  P  P  E  K  *  I  S  K  S  S  V  A  N  F  V  R  A  S  Q  M  T  C  D  T  S  S  S  G  C  G  L  E  K  L  E  S  L  S  D  D  S  I  T  V  I  S  E  N  W  N  G  F  C  S  S  S  E  A  L  L  K  G  S  G  D  L  S  F  S  D  E  F  V  M  R  A  K  N  L  C  K  H  G  L  S  S  L  V  E  Q  H  F  L  R  C  I  E  :  E  I  F  E  R  N  G  A  K  R  F  W  S  Y  F  E  P  Y  R  N  A  A  P  S  E  T  N  K  D  L  :  I  L  E  E  E  I  Q  Q  I  I  C  K  A  L  E  E  I  S  S  Q  K  Q  F  Q  E  K  C  L  L  L  L  A  R  A  L  Q  S  Y  E  E  D  K  L  Q  G  Q  A  N  P  D  S  T  R  V  Y  L  L  S  K  Y  Q  L  I  V  S  S  V  L  L  A  S  L  P  H  H  F  P  </second_frame>
            <third_frame>   E  H  N  L  L  E  P  K  A  S  L  F  P  L  S  L  S  L  L  L  S  G  L  T  Q  L  Q  I  F  I  C  M  I  F  N  Q  L  G  F  F  L  R  R  K  S  R  F  L  N  H  Q  *  Q  T  L  *  E  L  H  K  *  R  A  I  R  L  H  R  D  A  V  W  R  N  W  S  R  *  V  M  I  P  *  Q  *  Y  R  K  T  G  M  A  F  A  L  L  Q  K  L  F  S  K  A  V  V  I  C  H  S  A  M  S  L  *  C  E  R  R  I  S  A  N  M  A  F  H  L  *  L  N  N  T  S  F  V  A  L  R :   K  F  L  R  E  M  E  Q  K  G  S  G  V  I  L  N  L  T  E  M  L  H  H  L  K  L  I  R  I  L :   F  *  K  K  K  F  S  K  *  Y  V  K  L  W  K  K  Y  H  L  K  S  S  S  R  R  S  A  Y  Y  C  W  L  V  L  Y  S  P  M  K  K  T  N  C  K  D  K  R  T  Q  I  L  L  E  F  I  S  S  R  N  I  N  *  L  C  L  Q  F  Y  W  L  A  F  L  T  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16710" stop="16985"/>
                    <exon start="17621" stop="17710"/>
                    <exon start="18336" stop="18566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKSSVANFVRASQMTCDTSSSGCGLEKLESLSDDSITVISENWNGFCSSSEALLKGSGDLSFSDEFVMRAKNLCKHGLSSLVEQHFLRCIEEIFERNGAKRFWSYFEPYRNAAPSETNKDLILEEEIQQIICKALEEISSQKQFQEKCLLLLARALQSYEEDKLQGQANPDSTRVYLLSKYQLIVSSVLLASLPHHFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22068" PGL_stop="24545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22068" e_stop="22118"/>
            <exon e_start="22205" e_stop="22281"/>
            <exon e_start="22844" e_stop="22963"/>
            <exon e_start="23111" e_stop="23199"/>
            <exon e_start="23295" e_stop="23376"/>
            <exon e_start="23460" e_stop="23651"/>
            <exon e_start="24217" e_stop="24285"/>
            <exon e_start="24398" e_stop="24545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.275" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.797" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22068" e_stop="22118" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.955">
            <gDNA_intron_boundary i_start="22119" i_stop="22204" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22205" e_stop="22281" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22282" i_stop="22843" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22844" e_stop="22963" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.275" acc_prob="0.829">
            <gDNA_intron_boundary i_start="22964" i_stop="23110" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23111" e_stop="23199" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.881" acc_prob="0.955">
            <gDNA_intron_boundary i_start="23200" i_stop="23294" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23295" e_stop="23376" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23377" i_stop="23459" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23460" e_stop="23651" e_length="192"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="23652" i_stop="24216" i_length="565"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24217" e_stop="24285" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.797">
            <gDNA_intron_boundary i_start="24286" i_stop="24397" i_length="112"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24398" e_stop="24545" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22068" stop="22118"/>
              <exon start="22205" stop="22281"/>
              <exon start="22844" stop="22963"/>
              <exon start="23111" stop="23199"/>
              <exon start="23295" stop="23376"/>
              <exon start="23460" stop="23651"/>
              <exon start="24217" stop="24285"/>
              <exon start="24398" stop="24545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAG : AGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAG : GATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAG : TTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAA : GTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAG : GGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAG : AAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAG : ATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</gDNA_template>
            <first_frame> R  G  Q  I  Q  I  *  K  Q  L  S  S  I  N  H  S  Q  :  S  K  R  T  L  I  Y  L  *  I  M  L  M  L  P  S  Y  L  Q  I  S  G  L  L  F  R :   M  R  Q  S  T  Y  Q  S  L  W  S  S  Y  *  L  I  M  L  K  G  I  L  K  S  R  H  H  V  S  *  Y  G  R  K  I  W  A  V  *  S :   W  S  S  N  S  K  I  E  Q  C  S  L  M  L  L  L  C  M  L  Q  L  L  C  S  F  K  I  R  K   : S  G  Y  L  R  I  L  Q  L  Q  L  E  Y  L  L  M  C  *  I  G  G  *  I  F  G  *  A  R :   E  F  W  Q  S  Q  W  G  Q  T  L  L  I  M  L  L  L  W  W  K  P  *  M  I  L  V  K  V  E  L  L  M  E  A  V  R  S  Y  W  Q  V  R  T  T  E  N  A  L  W  P  L  L  K  I  N  C  E  K  R  *  L  S  M  R :   N  L  S  L  G  C  L  P  I  L  A  A  W  H  W  T  V  F  I  I  L  S  R :   C  S  A  L  L  I  L  H  M  T  N  L  C  N  N  C  K  A  F  Y  L  V  *  L  L  R  R  S  W  N  S  E  M  E  C  T  F  *  K  S  D  Q  F  H  L  Y  C  L  L </first_frame>
            <second_frame>  E  D  K  Y  K  Y  K  S  N  Y  Q  A  S  T  T  A  R :   A  K  G  P  *  Y  I  S  R  *  C  *  C  Y  H  H  I  F  K  F  L  A  S  Y  S   : G  *  G  N  Q  L  T  R  A  C  G  A  A  T  D  *  L  C  *  K  V  Y  *  S  Q  D  T  T  *  A  N  M  E  E  K  S  G  Q  C  K   : V  G  A  P  I  R  R  *  S  N  A  V  *  C  Y  S  F  A  C  F  N  Y  Y  A  V  S  R  S  E  K  :  V  D  I  *  E  S  C  S  C  S  W  S  T  C  *  C  V  E  *  E  D  K  F  L  D  K  Q   : G  N  S  G  R  V  N  G  G  R  L  C  *  S  C  F  Y  S  G  G  N  H  E  *  Y  W  *  K  W  N  Y  *  W  R  L  *  G  A  I  G  R  *  G  R  R  R  T  L  C  G  L  C  *  R  S  I  A  K  R  D  D  C  L  *   : E  I  Y  H  W  D  A  Y  Q  F  W  Q  H  G  I  G  P  Y  S  *  Y  S  Q   : D  V  L  H  C  *  S  Y  I  *  Q  I  S  A  T  T  A  K  L  F  I  W  F  S  C  *  G  E  V  G  I  Q  R  W  N  V  L  S  E  K  V  I  N  S  I  Y  I  V  Y   </second_frame>
            <third_frame>   R  T  N  T  N  I  K  A  T  I  K  H  Q  P  Q  P   : E  Q  K  D  L  D  I  S  L  D  N  V  N  A  T  I  I  S  S  N  F  W  P  P  I  Q  :  D  E  A  I  N  L  P  E  P  V  E  Q  L  L  T  D  Y  A  K  R  Y  T  E  V  K  T  P  R  K  L  I  W  K  K  N  L  G  S  V  K  :  L  E  L  Q  F  E  D  R  A  M  Q  F  N  V  T  P  L  H  A  S  I  I  M  Q  F  Q  D  Q  K  K :   W  I  S  K  N  L  A  A  A  V  G  V  P  V  D  V  L  N  R  R  I  N  F  W  I  S  K  :  G  I  L  A  E  S  M  G  A  D  S  A  D  H  A  F  T  L  V  E  T  M  N  D  T  G  K  S  G  T  I  D  G  G  C  E  E  L  L  A  G  E  D  D  G  E  R  S  V  A  S  V  E  D  Q  L  R  K  E  M  T  V  Y  E  :  K  F  I  T  G  M  L  T  N  F  G  S  M  A  L  D  R  I  H  N  T  L  K  :  M  F  C  I  A  D  P  T  Y  D  K  S  L  Q  Q  L  Q  S  F  L  S  G  L  V  A  E  E  K  L  E  F  R  D  G  M  Y  F  L  K  K  *  S  I  P  S  I  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22070" stop="22118"/>
                    <exon start="22205" stop="22281"/>
                    <exon start="22844" stop="22963"/>
                    <exon start="23111" stop="23199"/>
                    <exon start="23295" stop="23376"/>
                    <exon start="23460" stop="23651"/>
                    <exon start="24217" stop="24285"/>
                    <exon start="24398" stop="24520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTNTNIKATIKHQPQPEQKDLDISLDNVNATIISSNFWPPIQDEAINLPEPVEQLLTDYAKRYTEVKTPRKLIWKKNLGSVKLELQFEDRAMQFNVTPLHASIIMQFQDQKKWISKNLAAAVGVPVDVLNRRINFWISKGILAESMGADSADHAFTLVETMNDTGKSGTIDGGCEELLAGEDDGERSVASVEDQLRKEMTVYEKFITGMLTNFGSMALDRIHNTLKMFCIADPTYDKSLQQLQSFLSGLVAEEKLEFRDGMYFLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32690" PGL_stop="35271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32690" e_stop="32995"/>
            <exon e_start="33106" e_stop="33386"/>
            <exon e_start="33894" e_stop="34653"/>
            <exon e_start="35246" e_stop="35271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.731"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32690" e_stop="32995" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33106" e_stop="33386" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.794">
            <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="33894" e_stop="34653" e_length="760"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34654" i_stop="35245" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="0.731">
            <gDNA_exon_boundary e_start="35246" e_stop="35271" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32690" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34653"/>
              <exon start="35246" stop="35271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG : AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG : TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT : AAAAAAAAATATTTCACATAAAAAAA</gDNA_template>
            <first_frame> T  S  H  F  P  P  Y  R  I  K  K  K  K  T  K  I  S  F  S  L  N  F  L  A  F  V  *  K  K  Q  R  K  R  R  I  V  P  F  Y  L  F  L  Y  F  C  I  K  W  L  E  K  L  A  L  I  F  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  T  I  F  D  I  K  L  L  Q  G  H  A  L  S  Q  L  S  P  K  L  M  S  T  S  S  I  P  G  Y  Y  L  :  K  R  Q  N  L  E  T  M  S  G  I  F  L  P  L  E  I  E  N  I  Q  M  V  L  G  Q  I  E  Q  L  C  Q  V  I  G  R  L  L  A  L  I  K  Q  F  I  V  Q  I  N  M  L  E  L  K  K  H  L  F  F  T  K  A  N  H  Q  K  V  S  R  L  I  G  S  C  M  N  I  V  *  V  I  Q  S  L  K  H  L  S  K  V  D  L  *  G :   *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  L  *  R  *  *  K  L  K  K  K  N  *  R  H  K  M  *  V  L  Q  I  M  K  L  K  L  L  V  D  H  K  Q  *  N  Y  Q  E  F  V  H  C  H  I  Y  W  N  W  I  I  L  D  Q  F  H  N  Y  *  V  T  I  Y  Y  M  M  T  K  V  T  Q  *  I  M  *  I  T  Q  V  M  W  I  K  Y  H  H  N  N  K  I  Q  I  I  L  Q  A  I  I  V  I  F  S  S  I  I  N  N  H  F  L  *  I  Q  H  F  N  L  S  D  D  Q  *  R  R  Q  N  F  H  Q  E  S  S  K  *  I  L  S  Y  I  K  G  V  Q  Y  V  D  N  Y  I  *  N  I  F  S  T  K  R  F  M  A  G  *  K  Y  I  Y  M  K  A  I  G  *  K  G  D  I  K  S  L  *  Q  Q  L  *  N  I  I  K  C  Y  V  I  S  I  I  S  N  K  P  C  S  R  A  T  N  C  C  C  I  I  L  E  F  S  F  S  V  C  I  W  K  K  K  T  N  L  L  C  E  I  L  I  N  I  F  Q  Y  S  :  K  K  K  Y  F  T  *  K   </first_frame>
            <second_frame>  L  L  I  F  L  P  I  E  L  K  K  K  K  L  K  F  H  F  L  S  I  S  L  L  L  F  K  K  N  K  E  K  E  E  L  F  H  F  I  Y  F  Y  I  F  V  *  N  G  W  K  N  *  L  *  S  S  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  I  S  S  Y  F  K  A  M  P  C  L  N  Y  P  R  N  *  C  L  Q  V  R  S  L  G  I  T  * :   K  G  R  I  W  R  Q  *  V  V  F  F  Y  P  *  R  *  K  I  S  K  W  C  *  A  K  *  S  S  C  V  R  L  L  E  G  Y  W  H  *  *  S  N  L  *  C  K  *  I  C  W  N  *  K  S  T  C  F  L  Q  R  Q  T  T  K  R  C  Q  D  *  L  D  H  A  *  I  S  F  E  *  F  K  V  S  N  I  *  A  K  W  I  Y  E   : V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N  Y  R  D  D  E  S  *  R  R  R  I  R  G  T  K  C  E  Y  Y  K  *  *  N  *  S  C  W  W  T  T  N  N  E  I  T  K  N  L  F  I  V  T  S  I  G  I  G  L  F  W  I  N  S  T  I  T  K  *  Q  F  I  I  *  *  P  R  L  H  N  E  *  C  E  *  H  K  *  C  G  S  S  I  I  T  T  T  K  Y  K  *  Y  Y  K  Q  *  L  *  Y  F  L  Q  L  S  T  T  T  F  C  E  S  N  I  S  I  S  V  M  I  N  S  G  D  R  I  F  I  K  N  L  L  N  R  F  S  V  I  S  K  G  F  N  M  *  I  I  I  Y  K  I  F  F  Q  R  R  G  S  W  P  G  E  N  I  F  I  *  R  L  L  D  E  K  V  T  S  K  V  Y  D  N  N  C  K  I  *  S  N  V  M  S  L  V  L  L  A  T  N  L  V  V  G  Q  Q  I  V  V  V  L  F  *  N  L  V  S  Q  F  V  F  G  K  K  K  L  I  Y  F  V  K  F  *  *  I  F  F  S  I  L :   K  K  N  I  S  H  K  K  </second_frame>
            <third_frame>   F  S  F  S  S  L  *  N  *  K  K  K  N  *  N  F  I  F  S  Q  F  P  C  F  C  L  K  K  T  K  K  K  K  N  C  S  I  L  F  I  S  I  F  L  Y  K  M  V  G  K  I  S  S  D  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  Y  Q  A  T  S  R  P  C  P  V  S  I  I  P  E  I  D  V  Y  K  F  D  P  W  V  L  P   : E  K  A  E  F  G  D  N  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  A  I  Y  S  A  N  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  V  K  T  D  W  I  M  H  E  Y  R  L  S  D  S  K  S  Q  T  S  K  Q  S  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R  T  I  E  M  M  K  V  E  E  E  E  L  E  A  Q  N  V  S  T  T  N  N  E  I  E  V  V  G  G  P  Q  T  M  K  L  P  R  I  C  S  L  S  H  L  L  E  L  D  Y  F  G  S  I  P  Q  L  L  S  D  N  L  L  Y  D  D  Q  G  Y  T  M  N  N  V  N  N  T  S  N  V  D  Q  V  S  S  Q  Q  Q  N  T  N  N  I  T  S  N  N  C  N  I  F  F  N  Y  Q  Q  P  L  F  V  N  P  T  F  Q  S  Q  *  *  S  I  A  E  T  E  F  S  S  R  I  F  *  I  D  S  Q  L  Y  Q  R  G  S  I  C  R  *  L  Y  I  K  Y  F  F  N  E  E  V  H  G  R  V  K  I  Y  L  Y  E  G  Y  W  M  K  R  *  H  Q  K  F  M  T  T  I  V  K  Y  N  Q  M  L  C  H  *  Y  Y  *  Q  Q  T  L  *  *  G  N  K  L  L  L  Y  Y  F  R  I  *  F  L  S  L  Y  L  E  K  K  N  *  F  T  L  *  N  F  N  K  Y  F  S  V  F   : *  K  K  I  F  H  I  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32734" stop="32995"/>
                    <exon start="33106" stop="33386"/>
                    <exon start="33894" stop="34295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIFSQFPCFCLKKTKKKKNCSILFISIFLYKMVGKISSDLPPGFRFHPTDEELIMYYLRYQATSRPCPVSIIPEIDVYKFDPWVLPEKAEFGDNEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRLSDSKSQTSKQSGSMRLDDWVLCRIYKKKNLGRTIEMMKVEEEELEAQNVSTTNNEIEVVGGPQTMKLPRICSLSHLLELDYFGSIPQLLSDNLLYDDQGYTMNNVNNTSNVDQVSSQQQNTNNITSNNCNIFFNYQQPLFVNPTFQSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33464" e_stop="34139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33464" e_stop="34139" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33464" stop="34139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGAC</gDNA_template>
            <first_frame> R  V  S  Y  G  F  C  C  C  L  M  I  K  V  T  *  *  S  L  I  L  V  L  K  K  K  F  *  S  F  R  *  L  P  Q  K  K  R  K  L  K  L  A  M  N  S  I  V  N  L  L  I  F  S  V  I  V  I  *  H  V  V  *  *  P  *  I  I  L  V  R  A  K  *  I  F  *  S  *  V  I  I  *  Y  K  N  A  S  V  L  F  R  L  I  K  K  E  S  E  S  Y  I  Y  I  *  T  G  T  K  E  I  L  F  Y  I  R  C  I  I  R  I  Y  F  F  L  L  M  K  N  *  A  N  I  L  F  F  L  G  Y  F  F  F  S  V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N  Y  R  D  D  E  S  *  R  R  R  I  R  G  T  K  C  E  Y  Y  K  *  *  N  *  S  C  W  W  T  T  N  N  E  I  T  K  N  L  F  I  V  T  S  I  G  I  G  L  F  W  I  N  S  T  I  T  K  *  Q  F  I  I  *  *  </first_frame>
            <second_frame>  E  L  A  M  D  F  V  V  V  *  *  *  K  *  L  D  S  R  *  F  L  F  *  K  K  S  F  N  H  F  A  S  Y  P  K  K  K  E  N  *  N  *  L  *  I  L  S  L  I  C  *  F  S  L  *  L  *  F  D  M  W  S  N  S  H  E  L  F  *  *  G  Q  N  R  Y  F  E  V  K  L  L  F  N  I  K  M  H  Q  Y  C  L  D  *  L  K  R  K  V  S  H  I  Y  I  Y  E  L  G  Q  K  K  Y  Y  F  I  S  G  V  L  F  G  F  I  S  F  F  *  *  R  I  K  L  I  F  F  F  F  L  A  I  F  F  F  Q  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R  T  I  E  M  M  K  V  E  E  E  E  L  E  A  Q  N  V  S  T  T  N  N  E  I  E  V  V  G  G  P  Q  T  M  K  L  P  R  I  C  S  L  S  H  L  L  E  L  D  Y  F  G  S  I  P  Q  L  L  S  D  N  L  L  Y  D  D </second_frame>
            <third_frame>   S  *  L  W  I  L  L  L  F  N  D  K  S  N  L  I  V  A  N  S  C  F  K  K  K  V  L  I  I  S  L  V  T  P  K  K  K  K  I  E  I  S  Y  E  F  Y  R  *  S  V  D  F  L  C  N  C  D  L  T  C  G  L  I  A  M  N  Y  F  S  K  G  K  I  D  I  L  K  L  S  Y  Y  L  I  *  K  C  I  S  I  V  *  I  D  *  K  G  K  *  V  I  Y  I  Y  M  N  W  D  K  R  N  I  I  L  Y  Q  V  Y  Y  S  D  L  F  L  S  F  D  E  E  L  S  *  Y  S  F  F  S  W  L  F  F  F  F  S  *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  L  *  R  *  *  K  L  K  K  K  N  *  R  H  K  M  *  V  L  Q  I  M  K  L  K  L  L  V  D  H  K  Q  *  N  Y  Q  E  F  V  H  C  H  I  Y  W  N  W  I  I  L  D  Q  F  H  N  Y  *  V  T  I  Y  Y  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33846" stop="34139"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKLIFFFFLAIFFFQLDDWVLCRIYKKKNLGRTIEMMKVEEEELEAQNVSTTNNEIEVVGGPQTMKLPRICSLSHLLELDYFGSIPQLLSDNLLYDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32699" e_stop="33386"/>
            <exon e_start="33894" e_stop="33946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.794" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32699" e_stop="33386" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.794">
            <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="33894" e_stop="33946" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32699" stop="33386"/>
              <exon start="33894" stop="33946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG : TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAAC</gDNA_template>
            <first_frame> F  P  P  Y  R  I  K  K  K  K  T  K  I  S  F  S  L  N  F  L  A  F  V  *  K  K  Q  R  K  R  R  I  V  P  F  Y  L  F  L  Y  F  C  I  K  W  L  E  K  L  A  L  I  F  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  T  I  F  D  I  K  L  L  Q  G  H  A  L  S  Q  L  S  P  K  L  M  S  T  S  S  I  P  G  Y  Y  L  V  S  T  S  N  I  Y  V  Y  S  K  I  L  L  K  F  L  N  S  N  K  Y  H  L  *  L  L  L  L  F  C  F  Y  K  M  C  R  K  G  R  I  W  R  Q  *  V  V  F  F  Y  P  *  R  *  K  I  S  K  W  C  *  A  K  *  S  S  C  V  R  L  L  E  G  Y  W  H  *  *  S  N  L  *  C  K  *  I  C  W  N  *  K  S  T  C  F  L  Q  R  Q  T  T  K  R  C  Q  D  *  L  D  H  A  *  I  S  F  E  *  F  K  V  S  N  I  *  A  K  W  I  Y  E   : V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N </first_frame>
            <second_frame>  F  L  P  I  E  L  K  K  K  K  L  K  F  H  F  L  S  I  S  L  L  L  F  K  K  N  K  E  K  E  E  L  F  H  F  I  Y  F  Y  I  F  V  *  N  G  W  K  N  *  L  *  S  S  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  I  S  S  Y  F  K  A  M  P  C  L  N  Y  P  R  N  *  C  L  Q  V  R  S  L  G  I  T  W  L  V  H  L  I  Y  T  C  T  R  K  S  Y  *  N  F  *  I  Q  I  N  I  I  Y  D  Y  Y  Y  Y  F  V  F  I  K  C  V  E  K  A  E  F  G  D  N  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  A  I  Y  S  A  N  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  V  K  T  D  W  I  M  H  E  Y  R  L  S  D  S  K  S  Q  T  S  K  Q  S  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R   </second_frame>
            <third_frame>   S  S  L  *  N  *  K  K  K  N  *  N  F  I  F  S  Q  F  P  C  F  C  L  K  K  T  K  K  K  K  N  C  S  I  L  F  I  S  I  F  L  Y  K  M  V  G  K  I  S  S  D  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  Y  Q  A  T  S  R  P  C  P  V  S  I  I  P  E  I  D  V  Y  K  F  D  P  W  V  L  P  G  *  Y  I  *  Y  I  R  V  L  E  N  L  I  K  I  F  K  F  K  *  I  S  F  M  I  I  I  I  I  L  F  L  *  N  V  *  K  R  Q  N  L  E  T  M  S  G  I  F  L  P  L  E  I  E  N  I  Q  M  V  L  G  Q  I  E  Q  L  C  Q  V  I  G  R  L  L  A  L  I  K  Q  F  I  V  Q  I  N  M  L  E  L  K  K  H  L  F  F  T  K  A  N  H  Q  K  V  S  R  L  I  G  S  C  M  N  I  V  *  V  I  Q  S  L  K  H  L  S  K  V  D  L  *  G :   *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33048" stop="33386"/>
                    <exon start="33894" stop="33944"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQINIIYDYYYYFVFIKCVEKAEFGDNEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRLSDSKSQTSKQSGSMRLDDWVLCRIYKKKNLGR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32734" stop="33000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIFSQFPCFCLKKTKKKKNCSILFISIFLYKMVGKISSDLPPGFRFHPTDEELIMYYLRYQATSRPCPVSIIPEIDVYKFDPWVLPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40448" PGL_stop="42786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40448" e_stop="40947"/>
            <exon e_start="41038" e_stop="41239"/>
            <exon e_start="41921" e_stop="41955"/>
            <exon e_start="42220" e_stop="42244"/>
            <exon e_start="42662" e_stop="42786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.913" acc_prob="0.000" e_score="0.657"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.720"/>
          <exon-only e_score="0.552"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40448" e_stop="40947" e_length="500"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.865">
            <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="41038" e_stop="41239" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41240" i_stop="41920" i_length="681"/>
          </intron>
          <exon e_serial="3" e_score="0.657">
            <gDNA_exon_boundary e_start="41921" e_stop="41955" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41956" i_stop="42219" i_length="264"/>
          </intron>
          <exon e_serial="4" e_score="0.720">
            <gDNA_exon_boundary e_start="42220" e_stop="42244" e_length="25"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42245" i_stop="42661" i_length="417"/>
          </intron>
          <exon e_serial="5" e_score="0.552">
            <gDNA_exon_boundary e_start="42662" e_stop="42786" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40448" stop="40947"/>
              <exon start="41038" stop="41239"/>
              <exon start="41921" stop="41955"/>
              <exon start="42220" stop="42244"/>
              <exon start="42662" stop="42786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAG : TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGTAGCAGAAAAATCGCGTTGGTTTAACAAATAAACTGATCGAAAAACGTTGAAATTATATACAATTTTAT : AACCTTCAATCAGAATAAGCAAAACAAAAAAATGT : ATACTGCCTTCATTTTTTCCTTTTA : TAAAAACTTCAACATTCTTTGTCCTATCTTTTTTTTCTTTTTTAATGTTTTGCAAACACACTTTATGATCATTGATTTATTATATTAGGTCAATTGATAATATACTAATAACAATGGTTATGGTC</gDNA_template>
            <first_frame> F  F  S  T  Q  K  *  P  L  S  Q  I  L  Q  L  C  S  I  Q  K  P  K  *  P  K  L  I  T  H  N  A  R  H  Y  P  K  S  N  L  T  Y  Q  L  M  N  K  T  S  H  V  D  A  N  S  S  R  L  F  *  S  L  H  *  H  *  A  Y  N  S  P  L  *  H  *  L  K  I  G  A  F  D  H  S  *  E  N  I  S  L  S  L  D  C  P  L  K  M  Q  *  H  E  F  V  K  Q  Q  M  D  Y  I  V  L  K  R  C  W  R  L  T  H  G  G  M  Y  C  F  I  Y  D  L  N  Q  L  I  L  N  R  T  *  R  M  P  Y  P  G  C  L  K  V  E  K  S  L  I  L  K  L  S  M  S  L  L  I  T  W  L  S :   L  I  T  T  F  E  H  Q  R  Y  M  N  L  V  Y  S  M  R  R  R  *  N  Q  L  M  N  W  W  D  Y  L  H  N  N  I  I  R  L  K  G  E  *  M  L  *  Q  K  N  R  V  G  L  T  N  K  L  I  E  K  R  *  N  Y  I  Q  F  Y  :  N  L  Q  S  E  *  A  K  Q  K  N  V :   Y  C  L  H  F  F  L  L  :  *  K  L  Q  H  S  L  S  Y  L  F  F  L  F  *  C  F  A  N  T  L  Y  D  H  *  F  I  I  L  G  Q  L  I  I  Y  *  *  Q  W  L  W   </first_frame>
            <second_frame>  F  F  Q  H  K  N  D  H  F  H  K  S  Y  N  F  V  P  S  K  N  Q  N  N  Q  N  S  S  H  T  M  Q  D  T  T  Q  N  P  I  *  L  I  N  *  *  T  K  L  L  M  *  T  Q  T  H  R  D  F  S  S  H  S  I  D  T  R  P  T  I  H  P  F  S  I  S  *  K  L  G  R  S  I  I  L  K  R  T  F  L  *  A  W  I  V  P  *  R  C  S  S  T  N  S  S  N  S  R  W  T  T  *  Y  *  R  D  V  G  D  *  L  M  E  V  C  I  V  L  Y  T  T  *  I  S  L  S  *  T  G  R  E  E  C  L  I  Q  G  A  *  K  S  K  R  V  L  Y  *  N  C  Q  *  A  Y  *  *  H  G  *   : V  *  L  L  H  S  N  T  K  G  I  *  I  S  C  I  L  *  E  D  V  E  I  N  *  *  I  G  G  I  T  C  I  I  I  S  S  G  S  K  V  S  E  C  C  S  R  K  I  A  L  V  *  Q  I  N  *  S  K  N  V  E  I  I  Y  N  F  I :   T  F  N  Q  N  K  Q  N  K  K  M   : Y  T  A  F  I  F  S  F  Y :   K  N  F  N  I  L  C  P  I  F  F  F  F  F  N  V  L  Q  T  H  F  M  I  I  D  L  L  Y  *  V  N  *  *  Y  T  N  N  N  G  Y  G  </second_frame>
            <third_frame>   F  F  N  T  K  M  T  T  F  T  N  P  T  T  L  F  H  P  K  T  K  I  T  K  T  H  H  T  Q  C  K  T  L  P  K  I  Q  S  N  L  S  T  N  E  Q  N  F  S  C  R  R  K  L  I  A  T  F  L  V  T  P  L  T  L  G  L  Q  F  T  P  L  A  L  A  E  N  W  G  V  R  S  F  L  R  E  H  F  F  E  P  G  L  S  P  E  D  A  V  A  R  I  R  Q  T  A  D  G  L  H  S  I  K  E  M  L  E  T  N  S  W  R  Y  V  L  F  Y  I  R  L  K  S  A  Y  L  K  Q  D  V  K  N  A  L  S  R  V  P  E  S  R  K  E  S  Y  I  K  T  V  N  E  L  T  D  N  M  A  E  :  F  D  Y  Y  I  R  T  P  K  V  Y  E  S  R  V  F  Y  E  K  T  L  K  S  I  D  E  L  V  G  L  L  A  *  *  Y  H  Q  A  Q  R  *  V  N  V  V  A  E  K  S  R  W  F  N  K  *  T  D  R  K  T  L  K  L  Y  T  I  L   : *  P  S  I  R  I  S  K  T  K  K  C  :  I  L  P  S  F  F  P  F   : I  K  T  S  T  F  F  V  L  S  F  F  S  F  L  M  F  C  K  H  T  L  *  S  L  I  Y  Y  I  R  S  I  D  N  I  L  I  T  M  V  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40450" stop="40947"/>
                    <exon start="41038" stop="41136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFNTKMTTFTNPTTLFHPKTKITKTHHTQCKTLPKIQSNLSTNEQNFSCRRKLIATFLVTPLTLGLQFTPLALAENWGVRSFLREHFFEPGLSPEDAVARIRQTADGLHSIKEMLETNSWRYVLFYIRLKSAYLKQDVKNALSRVPESRKESYIKTVNELTDNMAEFDYYIRTPKVYESRVFYEKTLKSIDELVGLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="42308" PGL_stop="41358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42308" e_stop="42015"/>
            <exon e_start="41923" e_stop="41800"/>
            <exon e_start="41706" e_stop="41358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.358" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42308" e_stop="42015" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.358">
            <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41923" e_stop="41800" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41706" e_stop="41358" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42308" stop="42015"/>
              <exon start="41923" stop="41800"/>
              <exon start="41706" stop="41358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA : GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG : ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</gDNA_template>
            <first_frame> F  A  S  H  L  T  Y  K  S  *  Q  Q  N  F  I  L  V  S  K  F  E  L  K  G  K  N  E  G  S  I  N  *  N  W  R  G  I  K  G  Q  K  S  S  W  S  E  Q  R  N  L  C  I  *  S  C  F  T  Y  R  C  T  C  W  N  L  S  K  C  C  G  N  G  Y  C  R  S  S  T  S  I  Q  Y  T  D  C  K  F  *  S  S  V  *  *  Y  R  L  V  Q  :  V  L  R  G  F  E  F  Y  S  L  C  I  S  C  T  F  Y  H  Y  F  N  L  S  H  Y  Q  K  *  S  R  K  E  Q  S  F  A  H  C  S  R  R   : D  N  A  G  F  P  H  I  W  S  I  S  S  S  R  D  C  V  F  G  T  Q  W  Q  H  F  N  *  L  V  F  D  M  P  T  V  Y  R  F  L  S  T  F  C  W  I  P  Y  R  F  F  W  C  N  G  L  D  G  Y  T  Y  N  F  V  I  Y  R  F  I  K  A  L  K  M  L  A  T  L  A  I  A  S  L  C  V  C  I  V  F  V  N  V  S  F  I  S  C  I  S  L  Y  Q  D  F  H  Q  L  Y  H  I  M  K  R  F  P  P   </first_frame>
            <second_frame>  S  H  H  T  *  H  T  N  H  N  N  K  I  S  F  *  F  Q  S  L  S  *  K  E  K  M  K  A  V  S  I  E  T  G  E  G  S  K  A  K  R  V  H  G  V  N  R  G  I  S  V  F  D  L  V  L  R  I  V  A  L  V  G  T  L  A  S  A  V  A  M  G  T  A  D  Q  A  L  P  F  S  T  Q  I  V  N  F  E  A  Q  Y  D  D  I  D  S  F  K :   F  F  V  V  S  N  S  I  V  C  V  Y  L  A  L  S  I  T  I  S  I  F  H  I  I  R  S  R  A  G  K  S  R  V  L  L  I  V  L  D  A  :  I  M  L  V  F  L  T  S  G  A  S  A  A  A  A  I  V  Y  L  A  H  N  G  N  T  S  T  N  W  F  S  I  C  Q  Q  Y  T  D  F  C  Q  R  S  A  G  S  L  I  G  S  F  G  A  M  A  L  M  V  I  L  I  I  L  S  S  I  A  L  S  R  R  *  R  C  W  L  H  *  Q  L  L  A  F  V  C  V  L  C  L  *  M  L  V  S  S  V  A  F  H  C  I  K  I  F  I  S  C  I  T  *  *  K  D  F  L  L  </second_frame>
            <third_frame>   R  I  T  L  D  I  Q  I  I  T  T  K  F  H  S  S  F  K  V  *  A  K  R  K  K  *  R  Q  Y  Q  L  K  L  E  R  D  Q  R  P  K  E  F  M  E  *  T  E  E  S  L  Y  L  I  L  F  Y  V  S  L  H  L  L  E  P  *  Q  V  L  W  Q  W  V  L  Q  I  K  H  F  H  S  V  H  R  L  *  I  L  K  L  S  M  M  I  S  T  R  S   : S  S  S  W  F  R  I  L  *  F  V  Y  I  L  H  F  L  S  L  F  Q  S  F  T  L  S  E  V  E  Q  E  R  A  E  F  C  S  L  F  *  T  R :   *  C  W  F  S  S  H  L  E  H  Q  Q  Q  P  R  L  C  I  W  H  T  M  A  T  L  Q  L  T  G  F  R  Y  A  N  S  I  Q  I  S  V  N  V  L  L  D  P  L  S  V  L  L  V  Q  W  P  *  W  L  Y  L  *  F  C  H  L  S  L  Y  Q  G  A  E  D  V  G  Y  T  S  N  C  *  P  L  C  V  Y  C  V  C  K  C  *  F  H  Q  L  H  F  I  V  S  R  F  S  S  V  V  S  H  N  E  K  I  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42241" stop="42015"/>
                    <exon start="41923" stop="41800"/>
                    <exon start="41706" stop="41491"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKMKAVSIETGEGSKAKRVHGVNRGISVFDLVLRIVALVGTLASAVAMGTADQALPFSTQIVNFEAQYDDIDSFKFFVVSNSIVCVYLALSITISIFHIIRSRAGKSRVLLIVLDAIMLVFLTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVILIILSSIALSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55843" PGL_stop="49183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55843" e_stop="55687"/>
            <exon e_start="55574" e_stop="55547"/>
            <exon e_start="54207" e_stop="53609"/>
            <exon e_start="52473" e_stop="52078"/>
            <exon e_start="51980" e_stop="51726"/>
            <exon e_start="51573" e_stop="51316"/>
            <exon e_start="51126" e_stop="51062"/>
            <exon e_start="50944" e_stop="50869"/>
            <exon e_start="50691" e_stop="49183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.996"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="55843" e_stop="55687" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55574" e_stop="55547" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54207" e_stop="53609" e_length="599"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52473" e_stop="52078" e_length="396"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51980" e_stop="51726" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="51573" e_stop="51316" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51126" e_stop="51062" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50944" e_stop="50869" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.935">
            <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="50691" e_stop="49183" e_length="1509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55843" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGTACAACACTTCTAGTAAGACCATCCATGGTCAAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACT : TGATACAGGTTTGCTAGACAAACAAAAG : GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG : ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG : ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG : ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG : GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG : GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG : CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACACCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</gDNA_template>
            <first_frame> *  V  Q  H  F  *  *  D  H  P  W  S  K  N  F  L  Q  P  N  P  R  S  F  P  H  L  A  N  F  F  I  F  S  A  V  F  S  T  L  N  T  T  D  P  R  I  S  A  F  T  E  H   : L  I  Q  V  C  *  T  N  K  R :   V  A  H  S  A  P  *  H  G  R  P  E  E  *  L  R  *  E  N  A  I  G  I  R  L  F  Q  E  *  W  K  *  E  E  D  S  N  *  *  E  G  I  K  F  H  W  T  R  G  Y  C  F  S  L  F  M  P  H  R  K  N  W  K  Y  H  W  S  W  W  G  H  C  K  T  I  E  D  *  N  *  F  K  D  *  D  *  *  D  H  T  W  L  R  G  A  C  C  N  Y  L  *  W  K  *  R  N  *  Y  L  *  R  Y  W  *  P  D  F  T  C  S  R  C  S  I  *  G  A  *  Q  S  P  C  *  R  A  A  Y  G  R  R  S  G  G  S  S  D  Y  C  K  D  D  C  P  I  R  S  D  R  L  C  D  R  E  C  W  T  S  D  P  E  F  T  K  *  N  R  C  A  D  S  G  V  K  Q  *  A  L  A  P  L  C  S  K  L  G  *  A  S  P   : D  N  R  *  S  C  S  C  *  E  S  T  L  S  S  S  S  T  P  P  *  *  S  I  K  V  P  T  S  V  A  V  V  T  Q  H  I  *  V  W  C  W  T  C  E  S  S  C  W  *  P  S  H  G  C  D  I  I  D  G  S  L  R  K  L  Q  K  *  W  *  K  *  I  V  F  C  K  G  V  C  S  S  F  G  L  S  N  *  E  C  R  S  C  N  W  Q  R  W  R  S  Y  Q  T  A  K  T  G  I  R  C  I  Y  *  S  R  *  C  C  G  *  G  R  *  L  H  Y  I  C  I  S  K  G   : D  I  *  R  S  I  P  Y  H  R  C  N  N  A  F  A  T  K  K  *  *  E  N  *  K  R  I  R  *  C  Y  S  Y  D  S  P  A  C  T  *  F  T  S  W  M  P  Y  W  *  R  W  F  H  Y  H  *  D  A  E  F  H  K  G  K  H  P  R  S  F  E  G  K  S  S  K  S  G  I  R  R  *  R  D  G  A   : D  Y  W  R  C  *  C  C  C  Q  C  V  I  A  S  T  Y  A  V  E  G  Q  C  I  *  D  G  G  I  F  S  C  I  F  S  W  P  F  L  C  P  H  A  C  K  R  A  R  W  L  K  I  W  *  P  *  *  S  I  T  S  A  W  L  F  I  L  F  R  W  T  *  L  Q  *  F  V  S  K  G  *  L  W  W  L  T   : G  W  *  W  R  Q  L  C  T  I  W  R  L  F  L  W  A  T  *  *  F  R  :  G  F  Q  P  *  S  F  C  L  W  K  I  L  W  I  L  G  C  R  G  L  L  A  A  G   : A  I  I  S  D  A  C  S  R  P  L  P  D  P  I  D  E  A  S  S  L  R  T  E  D  Q  T  S  K  I  E  K  L  V  A  I  L  A  L  V  F  L  F  L  R  C  Y  Q  N  I  Y  C  N  E  T  T  P  L  S  H  *  R  P  F  V  P  K  I  P  L  L  *  Q  Y  C  V  A  D  *  V  M  T  V  *  Y  G  G  S  S  L  L  C  V  C  L  F  V  F  L  S  T  F  V  T  *  W  C  H  F  Y  C  *  P  V  M  L  Q  D  *  N  S  V  A  F  S  C  I  D  F  F  H  V  F  S  T  A  F  Q  *  L  N  K  S  S  R  K  S  G  F  C  I  S  G  G  K  N  V  M  F  S  *  Q  L  F  S  *  *  S  C  I  *  H  D  S  C  Y  W  V  L  S  S  *  T  K  P  L  L  L  V  A  S  T  E  L  L  R  D  Q  S  I  A  N  Y  D  Q  N  S  H  S  R  L  H  A  M  V  Y  T  K  K  A  D  F  Y  L  S  S  V  *  F  S  S  L  A  S  L  V  *  D  V  L  G  I  E  N  C  F  S  D  S  *  V  G  T  N  I  I  S  E  L  C  Y  M  W  *  T  C  V  L  S  C  *  Y  S  C  S  L  G  L  K  E  M  T  A  F  L  W  P  L  G  N  D  G  V  G  H  C  L  M  S  D  H  F  M  *  S  I  L  Q  D  *  *  K  I  *  F  L  *  *  I  P  K  V  S  T  S  L  S  C  K  C  Y  F  L  H  R  E  R  I  H  Y  F  G  R  N  I  Y  I  L  L  S  K  H  F  R  R  K  E  S  S  I  T  C  I  A  N  C  F  L  P  F  G  A  L  H  E  G  G  V  P  C  L  H  M  C  Y  F  I  I  *  E  W  I  L  F  A  L  C  C  L  I  R  V  L  H  C  T  L  K  A  G  R  L  W  T  A  E  H  S  Y  S  L  L  W  P  L  N  G  P  F  K  A  S  M  Q  *  S  S  L  K  R  L  I  P  G  N  K  K  A  L  K  Y  C  H  F  Y  L  V  P  T  G  F  I  C  K  Y  T  G  F  V  E  F  M  L  R  I  F  H  F  *  Y  I  W  F  C  F  V  E  F  I  I  R  I  F  H  F  *  Y  I  W  F  C  *  V  </first_frame>
            <second_frame>  R  Y  N  T  S  S  K  T  I  H  G  Q  K  T  F  Y  S  Q  T  L  E  A  S  L  I  W  Q  I  S  L  Y  F  Q  Q  Y  L  V  L  *  T  Q  Q  T  H  G  F  L  L  S  Q  N  T  :  *  Y  R  F  A  R  Q  T  K   : G  W  H  I  Q  L  L  D  M  A  G  Q  R  N  N  Y  G  K  R  M  Q  S  E  S  D  Y  S  R  S  D  G  S  K  R  R  T  P  T  D  E  K  E  S  N  S  I  G  P  E  D  T  V  F  R  Y  L  C  P  T  G  K  I  G  S  I  I  G  V  G  G  D  I  A  K  Q  L  R  T  E  T  N  S  K  I  R  I  S  E  T  I  P  G  C  E  E  R  V  V  T  I  Y  S  G  S  E  E  T  N  I  S  E  D  T  G  D  L  I  S  P  A  Q  D  A  L  F  R  V  H  D  R  V  L  A  E  E  L  R  M  D  E  D  L  E  D  H  Q  I  T  V  R  M  I  V  P  S  D  Q  I  G  C  V  I  G  N  A  G  Q  V  I  Q  N  L  R  S  E  T  G  A  Q  I  R  V  L  S  S  E  H  L  P  P  C  A  L  N  S  D  E  L  L  Q  :  I  T  G  E  V  A  V  V  K  R  A  L  Y  Q  V  A  A  R  L  H  D  N  P  S  R  S  Q  H  Q  L  L  S  S  P  S  I  Y  R  S  G  A  G  L  V  N  P  H  A  G  S  Q  V  M  G  V  T  S  L  M  G  P  Y  A  S  Y  K  S  D  G  R  S  R  S  S  S  V  K  E  F  A  V  R  L  V  C  P  I  E  N  V  G  A  V  I  G  K  G  G  G  V  I  K  Q  L  R  Q  E  S  G  A  S  I  K  V  D  S  A  A  A  E  G  D  D  C  I  I  F  V  S  A  K  E  :  T  F  E  D  Q  S  P  T  I  D  A  T  M  R  L  Q  P  R  S  S  E  K  T  E  K  E  S  G  D  A  I  L  T  T  R  L  L  V  P  S  S  R  V  G  C  L  I  G  K  G  G  S  I  I  T  E  M  R  N  S  T  R  A  S  I  R  V  L  S  K  E  N  H  P  K  V  A  S  V  D  D  E  M  V  Q  :  I  T  G  D  A  N  V  A  A  N  A  L  L  Q  V  L  M  R  L  R  A  N  A  F  E  M  E  G  S  F  P  A  F  S  P  G  L  S  Y  A  P  M  P  A  S  V  P  D  G  S  R  Y  G  N  R  D  N  R  S  R  R  H  G  Y  S  S  Y  S  G  G  H  D  Y  S  D  L  S  P  R  D  S  Y  G  G  S  Q  :  V  G  N  G  G  N  Y  A  P  Y  G  V  Y  S  S  G  R  P  S  S  S  G :   V  S  S  H  N  P  S  A  Y  G  K  S  Y  G  Y  *  G  V  E  G  Y  *  Q  P  E  :  L  S  S  P  M  P  V  P  D  H  C  P  T  L  L  T  K  P  P  A  *  E  Q  R  T  R  R  A  R  *  R  N  L  W  P  S  L  P  *  Y  F  C  F  L  G  V  T  R  I  Y  I  V  M  K  Q  H  L  L  V  I  E  G  L  L  Y  P  K  Y  L  C  F  S  S  I  V  *  Q  T  K  S  *  Q  F  D  M  V  V  L  L  Y  F  V  F  V  C  L  C  S  *  V  P  L  *  R  S  G  V  T  F  T  V  D  Q  L  C  Y  R  I  E  T  L  L  L  S  L  A  S  I  F  F  M  F  S  R  Q  L  S  S  N  *  T  K  V  Q  E  S  Q  V  S  A  F  Q  E  V  K  M  S  C  F  L  D  S  F  S  V  S  D  L  V  Y  D  M  I  P  A  I  G  F  Y  P  R  E  R  N  P  F  C  *  L  L  A  Q  S  F  *  E  I  N  Q  *  L  I  M  I  K  I  H  I  H  V  C  M  L  W  Y  T  L  R  R  Q  I  S  T  *  A  V  F  N  F  L  L  L  L  L  *  C  R  T  Y  L  G  L  R  I  A  F  P  I  V  E  *  A  R  I  *  F  Q  S  F  A  I  C  G  K  P  V  S  Y  L  V  N  I  H  A  P  L  A  S  R  K  *  R  R  S  F  G  L  *  E  M  M  V  L  V  T  A  *  C  L  I  I  L  C  D  R  F  C  R  I  D  R  K  F  S  S  Y  D  K  F  Q  R  *  V  L  L  F  L  A  N  V  I  S  Y  T  V  R  G  Y  I  I  L  V  G  T  Y  T  S  Y  C  Q  N  I  S  G  G  K  K  A  L  *  R  A  L  P  I  A  F  C  P  L  E  R  F  M  K  G  G  F  H  V  Y  I  C  V  I  S  L  F  E  N  G  F  S  L  L  C  A  V  *  *  E  F  C  T  V  L  *  K  L  V  V  C  G  R  L  S  I  V  T  L  Y  C  G  L  *  M  V  H  S  K  R  R  C  N  R  V  H  *  S  D  L  F  L  E  I  R  R  R  *  N  I  V  I  S  I  W  S  Q  Q  D  S  Y  V  N  I  L  V  L  L  S  S  C  *  E  Y  F  I  F  N  I  Y  G  F  V  L  W  N  S  *  L  E  Y  F  I  F  N  I  Y  G  F  V  E  L </second_frame>
            <third_frame>   G  T  T  L  L  V  R  P  S  M  V  K  K  L  F  T  A  K  P  *  K  L  P  S  F  G  K  F  L  Y  I  F  S  S  I  *  Y  F  E  H  N  R  P  T  D  F  C  F  H  R  T  L :   D  T  G  L  L  D  K  Q  K  :  G  G  T  F  S  S  L  T  W  Q  A  R  G  I  T  T  V  R  E  C  N  R  N  P  T  I  P  G  V  M  E  V  R  G  G  L  Q  L  M  R  R  N  Q  I  P  L  D  Q  R  I  L  F  F  V  I  Y  A  P  Q  E  K  L  E  V  S  L  E  L  V  G  T  L  Q  N  N  *  G  L  K  L  I  Q  R  L  G  L  V  R  P  Y  L  A  A  R  S  V  L  *  L  F  I  V  E  V  K  K  L  I  S  L  K  I  L  V  T  *  F  H  L  L  K  M  L  Y  L  G  C  M  T  E  S  L  L  K  S  C  V  W  T  K  I  W  R  I  I  R  L  L  *  G  *  L  S  H  Q  I  R  *  V  V  *  *  G  M  L  D  K  *  S  R  I  Y  E  V  K  Q  V  R  R  F  G  C  *  A  V  S  T  C  P  L  V  L  *  T  R  M  S  F  S  R :   *  P  V  K  L  Q  L  L  R  E  H  F  I  K  *  Q  H  A  S  M  I  I  H  Q  G  P  N  I  S  C  C  R  H  P  A  Y  I  G  L  V  L  D  L  *  I  L  M  L  V  A  K  S  W  V  *  H  H  *  W  V  L  T  Q  V  T  K  V  M  V  E  V  D  R  L  L  *  R  S  L  Q  F  V  W  F  V  Q  L  R  M  *  E  L  *  L  A  K  V  E  E  L  S  N  S  *  D  R  N  Q  V  H  L  L  K  S  I  V  L  R  L  R  E  M  I  A  L  Y  L  Y  Q  Q  R  R :   H  L  K  I  N  P  L  P  S  M  Q  Q  C  V  C  N  Q  E  V  V  R  K  L  K  K  N  P  V  M  L  F  L  R  L  A  C  L  Y  L  V  H  E  L  D  A  L  L  V  K  V  V  P  L  S  L  R  C  G  I  P  Q  G  Q  A  S  A  F  F  R  R  K  I  I  Q  K  W  H  P  *  M  T  R  W  C  R :   L  L  E  M  L  M  L  L  P  M  R  Y  C  K  Y  L  C  G  *  G  P  M  H  L  R  W  R  D  L  F  L  H  F  L  L  A  F  L  M  P  P  C  L  Q  A  C  Q  M  A  Q  D  M  V  T  V  I  I  D  H  V  G  M  V  I  H  L  I  Q  V  D  M  I  T  V  I  C  L  Q  G  I  V  M  V  A  H  R :   L  V  M  E  A  I  M  H  H  M  A  F  I  P  L  G  D  L  V  V  Q   : G  F  P  A  I  I  L  L  P  M  E  N  L  M  D  T  R  V  *  R  V  I  S  S  R  S :   Y  H  L  R  C  L  F  Q  T  I  A  R  P  Y  *  R  S  L  Q  P  K  N  R  G  P  D  E  Q  D  R  E  T  C  G  H  P  C  P  S  I  S  V  S  *  V  L  P  E  Y  I  L  *  *  N  N  T  S  *  S  L  K  A  F  C  T  Q  N  T  F  A  L  A  V  L  C  S  R  L  S  H  D  S  L  I  W  W  F  F  F  T  L  C  L  F  V  C  V  L  K  Y  L  C  D  V  V  V  S  L  L  L  L  T  S  Y  A  T  G  L  K  L  C  C  F  L  L  H  R  F  F  S  C  F  L  D  S  F  P  V  I  E  Q  K  F  K  K  V  R  F  L  H  F  R  R  *  K  C  H  V  F  L  T  A  F  Q  L  V  I  L  Y  M  T  *  F  L  L  L  G  S  I  L  V  N  E  T  P  S  V  S  C  *  H  R  A  F  K  R  S  I  N  S  *  L  *  S  K  F  T  F  T  F  A  C  Y  G  I  H  *  E  G  R  F  L  L  E  Q  C  L  I  F  F  S  C  F  S  S  V  G  R  T  W  D  *  E  L  L  F  R  *  L  S  R  H  E  Y  N  F  R  A  L  L  Y  V  V  N  L  C  L  I  L  L  I  F  M  L  P  W  P  Q  G  N  D  G  V  P  L  A  F  R  K  *  W  C  W  S  L  L  D  V  *  S  F  Y  V  I  D  S  A  G  L  I  E  N  L  V  L  M  I  N  S  K  G  K  Y  F  S  F  L  Q  M  L  F  L  T  P  *  E  D  T  L  F  W  *  E  H  I  H  P  T  V  K  T  F  Q  E  E  R  K  L  Y  N  V  H  C  Q  L  L  F  A  L  W  S  A  S  *  R  G  G  S  M  S  T  Y  V  L  F  H  Y  L  R  M  D  S  L  C  S  V  L  F  D  K  S  S  A  L  Y  F  E  S  W  S  F  V  D  G  *  A  *  L  L  F  T  V  A  F  E  W  S  I  Q  S  V  D  A  I  E  F  I  E  A  T  Y  S  W  K  *  E  G  V  K  I  L  S  F  L  F  G  P  N  R  I  H  M  *  I  Y  W  F  C  *  V  H  V  K  N  I  S  F  L  I  Y  M  V  L  F  C  G  I  H  N  *  N  I  S  F  L  I  Y  M  V  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55571" stop="55547"/>
                    <exon start="54207" stop="53609"/>
                    <exon start="52473" stop="52078"/>
                    <exon start="51980" stop="51726"/>
                    <exon start="51573" stop="51316"/>
                    <exon start="51126" stop="51062"/>
                    <exon start="50944" stop="50896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFARQTKGWHIQLLDMAGQRNNYGKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETNISEDTGDLISPAQDALFRVHDRVLAEELRMDEDLEDHQITVRMIVPSDQIGCVIGNAGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEVAVVKRALYQVAARLHDNPSRSQHQLLSSPSIYRSGAGLVNPHAGSQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPIENVGAVIGKGGGVIKQLRQESGASIKVDSAAAEGDDCIIFVSAKETFEDQSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIITEMRNSTRASIRVLSKENHPKVASVDDEMVQITGDANVAANALLQVLMRLRANAFEMEGSFPAFSPGLSYAPMPASVPDGSRYGNRDNRSRRHGYSSYSGGHDYSDLSPRDSYGGSQVGNGGNYAPYGVYSSGRPSSSGVSSHNPSAYGKSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50516" stop="50229"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKAFCTQNTFALAVLCSRLSHDSLIWWFFFTLCLFVCVLKYLCDVVVSLLLLTSYATGLKLCCFLLHRFFSCFLDSFPVIEQKFKKVRFLHFRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49738" stop="49526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKVSTSLSCKCYFLHRERIHYFGRNIYILLSKHFRRKESSITCIANCFLPFGALHEGGVPCLHMCYFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59593" PGL_stop="65066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59593" e_stop="59659"/>
            <exon e_start="60831" e_stop="60956"/>
            <exon e_start="64746" e_stop="65066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59593" e_stop="59659" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59660" i_stop="60830" i_length="1171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60831" e_stop="60956" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.968">
            <gDNA_intron_boundary i_start="60957" i_stop="64745" i_length="3789"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="64746" e_stop="65066" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59593" stop="59659"/>
              <exon start="60831" stop="60956"/>
              <exon start="64746" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTT : GTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTG : GGAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</gDNA_template>
            <first_frame> Q  S  R  H  F  Y  S  F  K  V  H  F  Q  S  L  H  S  N  N  S  N  I   : C  A  V  N  *  D  T  *  S  S  P  K  K  *  G  E  N  S  R  S  W  *  I  H  E  E  M  E  *  L  L  E  L  H  P  L  R  *  K  S  R  A   : G  S  I  N  C  *  G  W  Q  R  L  N  F  I  P  I  *  Q  *  *  L  *  F  N  H  Q  V  P  F  I  L  S  *  L  P  K  S  P  F  L  Y  V  K  T  H  T  S  S  V  I  S  N  *  N  N  T  *  K  R  S  Y  *  Q  P  L  S  R  F  S  R  I  *  C  L  N  I  T  K  R  *  T  P  L  E  Q  C  *  W  Q  S  *  L  N  R  G  F  *  I  F  S  F  *  L  P  K  *  T  </first_frame>
            <second_frame>  K  A  D  I  F  I  P  S  K  F  I  S  S  L  F  T  P  I  I  Q  T  F  :  V  Q  L  I  R  T  L  E  V  V  L  R  S  E  G  K  T  H  A  L  G  K  Y  M  K  R  W  S  S  Y  *  S  C  T  L  Y  A  E  N  R  E  L  :  G  A  S  I  A  R  D  G  R  G  S  T  S  S  R  S  D  S  S  D  C  D  S  I  T  K  S  H  S  S  Y  R  S  F  P  S  R  R  F  F  M  S  K  P  I  H  P  L  S  F  P  T  E  T  T  P  R  R  E  A  I  D  S  L  S  A  G  F  L  E  F  D  A  S  T  S  Q  R  D  K  H  R  L  S  S  A  S  G  S  L  D  L  T  E  A  S  E  S  F  H  S  D  F  L  S  K  P </second_frame>
            <third_frame>   K  Q  T  F  L  F  L  Q  S  S  F  P  V  S  S  L  Q  *  F  K  H  L :   C  S  *  L  G  H  L  K  *  S  *  E  V  R  G  K  L  T  L  L  V  N  T  *  R  D  G  V  V  T  R  V  A  P  F  T  L  K  I  E  S  W :   E  H  Q  L  L  G  M  A  E  A  Q  L  H  P  D  L  T  V  V  T  V  I  Q  S  P  S  P  I  H  L  I  V  A  S  Q  V  A  V  S  L  C  Q  N  P  Y  I  L  C  H  F  Q  L  K  Q  H  L  E  E  K  L  L  T  A  S  Q  Q  V  F  S  N  L  M  P  Q  H  H  K  E  I  N  T  A  *  A  V  L  V  A  V  L  T  *  Q  R  L  L  N  L  F  I  L  T  S  *  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60924" stop="60956"/>
                    <exon start="64746" stop="65066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTLYAENRELGASIARDGRGSTSSRSDSSDCDSITKSHSSYRSFPSRRFFMSKPIHPLSFPTETTPRREAIDSLSAGFLEFDASTSQRDKHRLSSASGSLDLTEASESFHSDFLSKP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60904" stop="60956"/>
                    <exon start="64746" stop="64995"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDGVVTRVAPFTLKIESWEHQLLGMAEAQLHPDLTVVTVIQSPSPIHLIVASQVAVSLCQNPYILCHFQLKQHLEEKLLTASQQVFSNLMPQHHKEINTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65758" PGL_stop="65099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65758" e_stop="65099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65758" e_stop="65099" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65758" stop="65099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCAAGTGCATACACAATTTCCACCACATTACATTTTACAACATGATTAAGCCACTAAAGATTCTAAACAGGAGAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTTACCAGGAAAATCCTTGCCTGAATCACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCACGAGATGGTCCGTGCAAAGCCCCCTCGACACAATCACCAGAATGGGCACAACCCCAAGGCTTGGATGGTCCTTCTTCACTGAATGGTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACATGGCGGCATGAAAGGACCCCAGCAACTGGCATATCTCCACTTCTCACAATTCGTCGGGAACTCCAAGGCGATCTTTGTGAAAGAAACCTCTCGCAT</gDNA_template>
            <first_frame> L  F  Q  V  H  T  Q  F  P  P  H  Y  I  L  Q  H  D  *  A  T  K  D  S  K  Q  E  K  L  R  R  L  G  H  Q  P  R  K  A  T  D  I  S  L  Q  L  Y  T  K  F  S  C  Y  F  S  P  E  P  A  D  A  F  E  D  P  T  I  A  *  S  T  D  P  I  K  S  C  D  E  N  V  L  V  F  L  N  L  P  G  K  S  L  P  E  S  P  F  K  E  R  F  F  L  I  R  F  L  F  S  E  S  I  V  P  R  D  G  P  C  K  A  P  S  T  Q  S  P  E  W  A  Q  P  Q  G  L  D  G  P  S  S  L  N  G  L  S  L  G  K  N  L  E  K  T  R  C  S  G  E  L  P  S  S  S  L  A  Q  I  G  H  G  G  S  L  L  H  D  F  G  V  A  C  S  K  H  S  A  *  N  T  W  R  H  E  R  T  P  A  T  G  I  S  P  L  L  T  I  R  R  E  L  Q  G  D  L  C  E  R  N  L  S  H </first_frame>
            <second_frame>  F  F  K  C  I  H  N  F  H  H  I  T  F  Y  N  M  I  K  P  L  K  I  L  N  R  R  S  *  D  D  *  D  T  N  H  E  R  P  R  T  S  A  C  N  Y  I  Q  N  S  V  V  T  S  A  R  N  L  L  M  L  L  K  I  P  P  L  H  D  Q  L  I  Q  *  K  A  V  T  K  M  Y  *  F  F  L  I  Y  Q  E  N  P  C  L  N  H  L  S  K  K  D  F  S  *  F  G  S  C  L  V  R  A  *  C  H  E  M  V  R  A  K  P  P  R  H  N  H  Q  N  G  H  N  P  K  A  W  M  V  L  L  H  *  M  V  *  A  *  E  R  T  W  R  K  L  A  A  L  E  N  Y  L  L  Q  A  W  H  R  L  G  M  E  D  H  F  Y  M  I  L  V  *  L  A  P  N  I  Q  H  E  I  H  G  G  M  K  G  P  Q  Q  L  A  Y  L  H  F  S  Q  F  V  G  N  S  K  A  I  F  V  K  E  T  S  R   </second_frame>
            <third_frame>   F  S  S  A  Y  T  I  S  T  T  L  H  F  T  T  *  L  S  H  *  R  F  *  T  G  E  V  K  T  I  R  T  P  T  T  K  G  H  G  H  Q  P  A  I  I  Y  K  I  Q  L  L  L  Q  P  G  T  C  *  C  F  *  R  S  H  H  C  M  I  N  *  S  N  K  K  L  *  R  K  C  I  S  F  S  *  F  T  R  K  I  L  A  *  I  T  F  Q  R  K  I  F  P  N  S  V  L  V  *  *  E  H  S  A  T  R  W  S  V  Q  S  P  L  D  T  I  T  R  M  G  T  T  P  R  L  G  W  S  F  F  T  E  W  F  K  P  R  K  E  L  G  E  N  S  L  L  W  R  T  T  F  F  K  L  G  T  D  W  A  W  R  I  T  F  T  *  F  W  C  S  L  L  Q  T  F  S  M  K  Y  M  A  A  *  K  D  P  S  N  W  H  I  S  T  S  H  N  S  S  G  T  P  R  R  S  L  *  K  K  P  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65554" stop="65201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STDPIKSCDENVLVFLNLPGKSLPESPFKERFFLIRFLFSESIVPRDGPCKAPSTQSPEWAQPQGLDGPSSLNGLSLGKNLEKTRCSGELPSSSLAQIGHGGSLLHDFGVACSKHSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84265" PGL_stop="86509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84265" e_stop="84346"/>
            <exon e_start="84439" e_stop="84751"/>
            <exon e_start="85629" e_stop="86509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="84265" e_stop="84346" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84347" i_stop="84438" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84439" e_stop="84751" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="84752" i_stop="85628" i_length="877"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="85629" e_stop="86509" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84265" stop="84346"/>
              <exon start="84439" stop="84751"/>
              <exon start="85629" stop="86509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86085" stop="86509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339319" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG : GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG : GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</gDNA_template>
            <first_frame> S  V  Y  G  Y  G  G  G  G  W  I  D  A  H  A  T  F  Y  G  G  G  D  A  S  G  T  M   : G  G  A  C  G  Y  G  N  L  Y  S  Q  G  Y  G  T  N  T  A  A  L  S  T  A  M  F  N  N  G  L  S  C  G  S  C  F  E  L  R  C  V  N  D  R  Q  G  C  L  P  G  S  I  V  V  T  A  T  N  F  C  P  P  N  N  A  L  P  N  N  A  G  G  W  C  N  P  P  L  H  H  F  D  L  S  Q  P  I  F  Q  H  I  A  H  Y  K  A  G  I  V  P  V  A  Y  R  R :   V  P  C  R  R  R  G  G  I  R  F  T  I  N  G  H  S  Y  F  N  L  V  L  V  T  N  V  G  G  G  G  D  V  H  S  V  A  V  K  G  S  R  T  G  W  Q  P  M  S  R  N  W  G  Q  N  W  Q  N  N  N  N  L  N  G  Q  T  L  S  F  K  V  T  T  G  D  G  R  S  L  I  S  Y  N  V  A  P  A  H  W  S  F  G  Q  T  Y  T  G  A  Q  F  H  *  K  K  A  L  N  G  V  F  F  F  F  K  F  L  K  V  Y  L  L  E  L  L  L  S  L  L  V  L  V  C  I  L  I  W  S  L  V  L  V  L  *  L  F  S  I  E  V  F  W  L  *  R  C  G  L  *  G  K  K  K  *  K  K  G  I  F  *  N  C  P  L  F  H  F  D  *  I  K  G  I  L  L  L  G  T  L  I  L  E  A  T  L  S  S  F  F  W  F  W  R  V  F  W  *  F  F  L  L  L  R  A  E  V  E  S  S  G  G  L  L  P  P  A  V  G  R  W  G  W  G  W  G  G  V  G  V  F  L  A  T  F  F  L  S  F  S  L  *  L  K  M  D  F  V  C  V  R  L  *  N  V  K  N  H  L  T  S  N  D  S  R  R  L  W  L  C  I  L  T  F  V  M  P  L  S  V  L  I  C  L  T  </first_frame>
            <second_frame>  L  F  M  V  M  V  E  E  V  G  L  M  L  M  Q  L  F  M  G  V  V  M  L  L  E  Q  W  :  V  G  L  V  D  M  G  I  F  I  V  K  G  M  A  Q  I  Q  Q  L  *  V  L  L  C  S  T  M  G  *  A  V  V  L  V  L  N  *  G  V  *  M  T  D  K  G  V  C  L  V  L  L  W  L  L  L  Q  I  F  A  H  Q  T  M  P  S  L  I  M  Q  V  A  G  V  I  L  H  F  T  I  L  T  S  L  S  L  F  S  N  T  L  L  I  T  K  L  E  L  S  L  L  L  I  E   : G  Y  P  V  E  E  G  E  E  *  G  S  Q  S  M  D  T  H  T  S  T  *  Y  *  *  Q  M  L  V  V  V  V  M  F  I  Q  *  L  L  K  D  Q  E  Q  V  G  S  Q  C  Q  E  T  G  D  K  T  G  K  T  T  T  T  L  M  D  K  H  Y  H  L  R  L  Q  Q  V  M  V  E  V  *  S  H  T  M  L  H  L  L  T  G  H  L  D  R  H  I  L  V  L  N  S  T  K  K  R  H  *  M  G  F  F  F  S  S  S  F  *  K  Y  I  Y  *  N  Y  Y  Y  H  Y  *  Y  *  Y  A  Y  *  F  G  H  *  Y  *  Y  C  D  Y  L  V  *  R  Y  F  G  C  K  G  V  V  F  K  V  K  K  N  E  K  R  A  Y  F  K  I  V  L  F  F  I  L  I  E  L  R  V  S  Y  F  W  G  P  *  F  L  R  P  H  L  V  V  F  F  G  F  G  G  Y  F  G  N  F  S  F  C  *  G  Q  K  W  K  A  V  V  D  F  Y  H  P  Q  L  V  G  G  G  G  G  G  V  G  W  G  Y  F  W  Q  L  F  F  *  A  S  A  C  S  *  R  W  T  L  Y  V  *  D  Y  E  M  *  R  T  I  *  L  V  M  I  Q  E  D  Y  G  Y  V  F  *  L  L  *  C  L  S  R  F  *  F  V  *  Q </second_frame>
            <third_frame>   C  L  W  L  W  W  R  R  L  D  *  C  S  C  N  F  L  W  G  W  *  C  F  W  N  N  G :   W  G  L  W  I  W  E  S  L  *  S  R  V  W  H  K  Y  S  S  F  K  Y  C  Y  V  Q  Q  W  V  E  L  W  F  L  F  *  I  K  V  C  K  *  Q  T  R  V  F  A  W  F  Y  C  G  Y  C  Y  K  F  L  P  T  K  Q  C  P  P  *  *  C  R  W  L  V  *  S  S  T  S  P  F  *  P  L  S  A  Y  F  P  T  H  C  S  L  Q  S  W  N  C  P  C  C  L  *  K  :  G  T  L  *  K  K  G  R  N  K  V  H  N  Q  W  T  L  I  L  Q  L  S  T  S  N  K  C  W  W  W  W  *  C  S  F  S  S  C  *  R  I  K  N  R  L  A  A  N  V  K  K  L  G  T  K  L  A  K  Q  Q  Q  P  *  W  T  N  T  I  I  *  G  Y  N  R  *  W  *  K  F  D  L  I  Q  C  C  T  C  S  L  V  I  W  T  D  I  Y  W  C  S  I  P  L  K  K  G  I  K  W  G  F  F  F  L  Q  V  F  E  S  I  F  T  R  I  T  I  I  I  T  S  I  S  M  H  T  D  L  V  T  S  I  S  I  V  T  I  *  Y  R  G  I  L  V  V  K  V  W  S  L  R  *  K  K  M  K  K  G  H  I  L  K  L  S  S  F  S  F  *  L  N  *  G  Y  L  T  F  G  D  P  N  S  *  G  H  T  *  *  F  F  L  V  L  E  G  I  L  V  I  F  P  S  V  K  G  R  S  G  K  Q  W  W  T  F  T  T  R  S  W  *  V  G  V  G  V  G  W  G  G  G  I  F  G  N  F  F  F  K  L  Q  P  V  A  E  D  G  L  C  M  C  E  T  M  K  C  K  E  P  F  N  *  *  *  F  K  K  I  M  V  M  Y  F  N  F  C  N  A  S  L  G  F  N  L  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84265" stop="84346"/>
                    <exon start="84439" stop="84751"/>
                    <exon start="85629" stop="85935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVYGYGGGGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCFELRCVNDRQGCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQHIAHYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGGGDVHSVAVKGSRTGWQPMSRNWGQNWQNNNNLNGQTLSFKVTTGDGRSLISYNVAPAHWSFGQTYTGAQFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="91611" PGL_stop="92414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91611" e_stop="92414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91611" e_stop="92414" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91611" stop="92414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</gDNA_template>
            <first_frame> P  Y  F  N  *  L  W  S  Q  I  Q  G  E  N  T  L  S  S  R  T  Q  Y  Q  S  Q  *  S  S  S  T  K  P  P  F  T  I  S  N  A  R  F  N  Q  I  C  *  S  M  S  V  F  N  G  D  *  T  V  G  N  W  S  N  T  *  Y  A  S  S  A  F  N  L  R  P  I  Y  P  P  L  P  N  F  R  F  L  V  K  R  R  R  Y  P  F  P  *  H  S  E  I  H  Y  P  M  S  E  N  S  C  L  *  C  *  R  S  I  E  T  H  I  *  V  F  E  G  I  W  V  C  G  S  E  S  N  Y  L  S  D  Y  C  F  A  C  V  Q  C  *  A  N  F  E  P  *  N  *  L  H  V  E  F  G  I  *  T  R  *  C  G  *  Y  G  F  E  I  T  W  V  V  D  I  *  Y  *  E  K  L  *  A  K  S  *  V  F  F  E  G  D  E  W  G  Y  K  G  I  E  E  V  S  S  V  L  F  V  *  F  G  E  E  D  *  A  S  A  *  A  F  G  G  A  W  V  Y  A  V  F  I  G  D  V  E  G  *  *  W  R  I  Q  C  Q  I  D  *  N  A  I  E  V  S  G  *  *  A  N  V  V  R  N  *  L </first_frame>
            <second_frame>  L  T  S  T  D  C  G  L  K  F  R  E  K  I  L  Y  L  Q  E  L  N  I  N  P  S  K  V  L  Q  L  N  P  H  L  R  S  A  T  L  D  S  I  R  S  V  E  V  C  L  F  S  M  G  I  E  R  S  A  I  G  R  I  L  D  M  H  P  Q  L  L  T  S  D  P  Y  I  H  L  Y  P  I  F  D  F  L  L  N  D  V  V  I  P  F  H  D  I  R  K  S  I  I  R  C  P  R  I  L  V  C  S  V  E  D  Q  L  K  P  T  F  E  F  L  K  E  F  G  F  V  G  Q  N  R  I  T  C  Q  T  T  V  L  L  V  S  S  V  E  L  T  L  N  P  K  I  D  Y  M  L  S  L  G  F  E  L  D  D  V  A  N  M  V  L  R  S  P  G  L  L  T  F  S  I  E  K  N  F  R  P  K  V  E  Y  F  L  K  E  M  N  G  D  I  R  E  L  K  R  F  P  Q  Y  F  S  F  S  L  E  R  K  I  K  P  R  H  R  L  L  V  E  H  G  F  T  L  S  L  S  E  M  L  K  V  S  D  G  E  F  N  A  R  L  I  E  M  R  L  R  L  V  D  D  K  Q  M  *  Y  V  I  N   </second_frame>
            <third_frame>   L  L  Q  L  T  V  V  S  N  S  G  R  K  Y  S  I  F  K  N  S  I  S  I  P  V  K  F  F  N  *  T  P  I  Y  D  Q  Q  R  S  I  Q  S  D  L  L  K  Y  V  C  F  Q  W  G  L  N  G  R  Q  L  V  E  Y  L  I  C  I  L  S  F  *  P  P  T  H  I  S  T  F  T  Q  F  S  I  S  C  *  T  T  S  L  S  L  S  M  T  F  G  N  P  L  S  D  V  R  E  F  L  F  V  V  L  K  I  N  *  N  P  H  L  S  F  *  R  N  L  G  L  W  V  R  I  E  L  L  V  R  L  L  F  C  L  C  P  V  L  S  *  L  *  T  L  K  L  I  T  C  *  V  W  D  L  N  S  M  M  W  L  I  W  F  *  D  H  L  G  C  *  H  L  V  L  R  K  T  L  G  Q  K  L  S  I  F  *  R  R  *  M  G  I  *  G  N  *  R  G  F  L  S  T  F  R  L  V  W  R  G  R  L  S  L  G  I  G  F  W  W  S  M  G  L  R  C  L  Y  R  R  C  *  R  L  V  M  E  N  S  M  P  D  *  L  K  C  D  *  G  *  W  M  I  S  K  C  S  T  *  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91612" stop="92400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSTDCGLKFREKILYLQELNINPSKVLQLNPHLRSATLDSIRSVEVCLFSMGIERSAIGRILDMHPQLLTSDPYIHLYPIFDFLLNDVVIPFHDIRKSIIRCPRILVCSVEDQLKPTFEFLKEFGFVGQNRITCQTTVLLVSSVELTLNPKIDYMLSLGFELDDVANMVLRSPGLLTFSIEKNFRPKVEYFLKEMNGDIRELKRFPQYFSFSLERKIKPRHRLLVEHGFTLSLSEMLKVSDGEFNARLIEMRLRLVDDKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 25 chains have been computed
$ 
$ memory statistics:
$ 102336 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 5685 bytes was the average size of a spliced alignment
$ 20960 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1612 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 32 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:36:35
-->
