<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:31:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281463" ref_strand="-" ref_description="SGN-E281463 [cLEL-1-A22](-)">
      <seq>gcacgagccaaaaggatagacacaactaataacttcttattgaaattttgctaatattatctcaaatttagagctatcctacaatatgggaaggtttgataaagagggattgaaaaaagggccatggactccagaagaagaccaaaaacttttgtctttcattgatacatatggttgtggtagttggagggctttgactgctaaagctggtttacaaagatgtggaaagagttgtaggctaagatggataaactatcttaagcgtgatattaagagaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="916" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="623" g_stop="414" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="413" i_stop="224" i_length="190">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="223" g_stop="149" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="284" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E281463" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281463" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="623" e_stop="414"/>
          <exon e_start="223" e_stop="149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCCAAAAGGATAGACACAACTAATAACTTCTTATTGAAATTTTGCTAATATTATCTCAAATTTAGAGCTATATATACAATATGGGAAGGTTTGATAAAGAGGGATTGAAAAAAGGGCCATGGACTCCAGAAGAAGACCAAAAACTTTTGTCTTTCATTGATACATATGGTTGTGGTAGTTGGAGGGCTTTGCCTGCTAAAGCTGGTAATTGATACTTTCTGTTTCAATTTATGCGATACACTTTTTTATTCTGATAAAAAAAATGATACTACCTTTCTATATTTAGAAATGTACAATTTGATTATTTATAATTTTATATTTTATCCTTGACAAAATAATTCAAAAGTATTTCTTAATTATTTTAGCATAATATTATCTCTTCATTTTTTTTTAGGTTTACAAAGATGTGGAAAGAGTTGTAGGCTAAGATGGATAAACTATCTTAGGCCTGATATTAAGAGAGGAAAAT</genome_strand>
        <mrna_strand>GCACGAGCCAAAAGGATAGACACAACTAATAACTTCTTATTGAAATTTTGCTAATATTATCTCAAATTTAGAGCTAT-CCTACAATATGGGAAGGTTTGATAAAGAGGGATTGAAAAAAGGGCCATGGACTCCAGAAGAAGACCAAAAACTTTTGTCTTTCATTGATACATATGGTTGTGGTAGTTGGAGGGCTTTGACTGCTAAAGCTG..............................................................................................................................................................................................GTTTACAAAGATGTGGAAAGAGTTGTAGGCTAAGATGGATAAACTATCTTAAGCGTGATATTAAGAGAGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423137" ref_strand="-" ref_description="SGN-E423137 [STM-41-H5]">
      <seq>cgagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatggtaagtcagggtctgcaacctcgatattgtgggccagttgatgctttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcatggtcccaaatgtccagagagcttttttagttaacatgggagaactagcgtgctatgatcatgcaaagcggtttgtgatcaataacaacatagcaaatgataatatatatgcacacactttatcatctataatgtcaggcctgtcagcaacaacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataatcaaagtaattgtaaatataaaaactcctacgattgtcttgtcaaaactattagagttgaaggactcaaagcattgtggaagggattctttcctacatgggcaagacttggcccttggcaatttgtattctgggtatcatatgagaaattccgacaaatcgctggtctctcttcattctaaccaattcatcacgctgagtgctgtataacacggtggagcaaaggaaaactgaggagacagagttctacttggaattattcagtataggcattagttaaagaatgcatttttcgggccgaattctgttgcagacaagaaactatttaagtggaaaaggacagagagacgaactcattatctaacgaattttgaactgtgcgtcatagagatttctatccaaaaggaattttcatttcttgtgattatgatcaatgaagaaaaactttgataaaatatatagatgaacccttttatcatctgatatatgaacagtaagatgcaagtcaataatatactctcttatattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="9147" stop="7609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8847" g_stop="8269" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8268" i_stop="8163" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.946" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8162" g_stop="7909" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="818" r_length="239" r_score="0.823"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="883" polyA_stop="899"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E423137" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423137" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8847" e_stop="8269"/>
          <exon e_start="8162" e_stop="7909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAAGG-ATTTGTTTTTCTTGTGATTATGATCAATGTAGAAAGACTTTGATAATATTATATATAT</genome_strand>
        <mrna_strand>CGAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATGGTAAGTCAGGGTCTGCAACCTCGATATTGTGGGCCAGTTGATGCTTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCATGGTCCCAAATGTCCAGAGAGCTTTTTTAGTTAACATGGGAGAACTAGCGTGCTATGATCATGCAAAGCGGTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACTTTATCATCTATAATGTCAGGCCTGTCAGCAACAACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAATCAAAGTAATTGTAAATATAAAAACTCCTACGATTGTCTTGTCAAAACTATTAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCAAGACTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATCGCTGGTCTCTCTTCATTCTAACCAATTCATCACGCTGAGTGCTGTATAACACGGTGGAGCAAAG..........................................................................................................GAAAAC-TGAGGAGACAGAG--TTCTACTTGGAATTATTCAGTATAGGC---A-TTAGTTAAAGAATGCATTTTTCGGGCCGAATTCTGTTGCAGACAAGAAA--CTATTTAAGTGGAAAAGGACAGAGAGACGAACTCATTATCTAAC-GA--AT-T-TTGAACTGTG-CGTCATAGAGATTTCTATCCAAAAGGAATTTTCATTTCTTGTGATTATGATCAATGAAGAAAAACTTTGATAA-AATATATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215188" ref_strand="+" ref_description="SGN-E215188 [cLEL-20-E4](-)">
      <seq>ggcacgagcttcattctaaacaattcatcacgctgagtgctgtataacacagtgaagcaaaggttcgattttcaaattttgttccctttgattgatcttgagttatatctatgttgtatcttagtgtgtgttgagaagccaagtgtgcttctttactcccttttgtaggaatacttgggtagacagagtcttctacttggaattattcatcataggcgttagttagttaaagaatgtattctacgggccgaattctgtttcagacaagaaactctatttaagtggaaaaggacatagagacgaattcattatctaactcattatctatcgaataacgaactcatcgagatttctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8622" stop="7669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8330" g_stop="7969" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="375"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E215188" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8330" e_stop="7969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</genome_strand>
        <mrna_strand>GGCACGAGCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215476" ref_strand="+" ref_description="SGN-E215476 [cLEL-20-E4](-)">
      <seq>tttgttccctttgattgatcttgagttatatctatgttgtatcttagtgtgtgttgagaagccaagtgtgcttctttactcccttttgtaggaatacttgggtagacagagtcttctacttggaattattcatcataggcgttagttagttaaagaatgtattctacgggccgaattctgtttcagacaagaaactctatttaagtggaaaaggacatagagacgaattcattatctaactcattatctatcgaataacgaactcatcgagatttctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8553" stop="7669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8253" g_stop="7969" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="298"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E215476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8253" e_stop="7969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</genome_strand>
        <mrna_strand>TTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544186" ref_strand="+" ref_description="SGN-E544186 [TUS-66-G6](-)">
      <seq>ccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataagcaagggaattgcaagtatagaaactcctacgattgtcttgtcaaaacggtcagagttgaaggactcaaagcattgtggaagggattctttcctacatgggctaggcttggcccttggcaatttgtattctgggtatcatatgagaaattccgacaaattgctggtctctcttcattctaaacaattcatcacgctgagtgctgtataacacagtgaagcaaaggttcgattttcaaattttgttccctttgattgatcttgagttatatctatgttgtatcttagtgtgtgttgagaagccaagtgtgcttctttactcccttttgtaggaatacttgggtagacagagtcttctacttggaattattcatcataggcgttagttagttaaagaatgtattctacgggccgaattctgtttcagacaagaaactctatttaagtggaaaaggacatagagacgaattcattatctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="8990" stop="7715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8690" g_stop="8015" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="694"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E544186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8690" e_stop="8015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAA</genome_strand>
        <mrna_strand>CCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721614" ref_strand="+" ref_description="SGN-E721614 [FC14CB12]">
      <seq>tgggaccactagctccctgtagcccaagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggtgactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataagcaagggaattgcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10890" stop="8176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10611" g_stop="10221" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8476" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="769" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E721614" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10611" e_stop="10221"/>
          <exon e_start="8854" e_stop="8476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGT</genome_strand>
        <mrna_strand>TGGGACCACTAGCTCCCTG-TAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGTGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549001" ref_strand="+" ref_description="SGN-E549001 [TUS-66-G6]">
      <seq>caagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataancacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagctgtccagcagatgtaattaagacaagaatgatgaatcaggctgccgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10886" stop="8192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10586" g_stop="10221" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8492" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="729" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E549001" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10586" e_stop="10221"/>
          <exon e_start="8854" e_stop="8492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAG</genome_strand>
        <mrna_strand>CAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAANCACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423136" ref_strand="+" ref_description="SGN-E423136 [STM-41-H5]">
      <seq>caagagttgaagaatgggccagcttcaaagatgagtgtttaaggtctataacactgatgcccctcaggcctggacagctcaatgaaagcccaagtgtttaacgatggccggaaagcccatacaacaaagatagccgtgacggcgatgtcggcaatggcggcggaaacggtgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcatctcgacggatatcagccgtccgagtagtggcggagatcttacgaaacgacggcattttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgcggaattctttggttcctgctgatcatactctttctctgtcaagcaaagccattattggtggaatatctggtgttattgctcaggttgtggcgagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatggtaagtcagggtctgcaacctcgatattgtgggccagttgatgctttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcatggtcccaaatgtccagagagcttttttagttaacatgggagaactagcgtgctatgatcatgcaaagcggtttgtgatcaataacaacatagcaaatgataatatatatgcacacactttatcatctataatgtcaggcctgtcagcaacaacattgagctgtccagcagatgtatttaagacnagaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10982" stop="8210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10682" g_stop="10221" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8510" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="801" r_length="345" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E423136" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10682" e_stop="10221"/>
          <exon e_start="8854" e_stop="8510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATG</genome_strand>
        <mrna_strand>CAAGAGTTGAAGAATGGGCCAGCTTCAAAGA--TGAGTGTTTAAGGTCTATAACACTGATGCCCCTCAGGCCTGG---AC-AGCTCAATGAAAGCCCAAGTGTTTAACGATGGCCGGAAAGCCCATACAACAAAGATAGCCGTGACGGCGATGTCGGCAATGGCGGCGGAAACGGTGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCATCTCGACGGATATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCATTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGCGGAATTCTTTGGTTCCTGCTGATCATACTCTTTCTCTGTCAAGCAAAGCCATTATTGGTGGAATATCTGGTGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATGGTAAGTCAGGGTCTGCAACCTCGATATTGTGGGCCAGTTGATGCTTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCATGGTCCCAAATGTCCAGAGAGCTTTTTTAGTTAACATGGGAGAACTAGCGTGCTATGATCATGCAAAGCGGTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACTTTATCATCTATAATGTCAGGCCTGTCAGCAACAACATTGAGCTGTCCAGCAGATGTATTTAAGACNAGAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316274" ref_strand="+" ref_description="SGN-E316274 [cTOA-23-D20]">
      <seq>aagagtttaacgatggccggagagcccatacaacaaagttagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcgtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactttctctgtcaagcaaagctattattggtggaatatctggagttattgctcagttgcattacttcttgtgattcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgctttgtgatcaataacaacatagcaaatgataatatatatgcacacacgttatcatctataatgtcaggcctgtcagccactacattgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10885" stop="8242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10585" g_stop="10221" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8877" g_stop="8542" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="701" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E316274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10585" e_stop="10221"/>
          <exon e_start="8877" e_stop="8542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCT</genome_strand>
        <mrna_strand>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449813" ref_strand="+" ref_description="SGN-E449813 [cSTS-7-H13]">
      <seq>caagagttgaagaatgggccagcttcaaagatgagtgtttaaggtctataacactgatgcccctcaggcctggacagctcaatgaaagcccaagtgtttaacgatggccggaaagcccatacaacaaagatagccgtgacggcgatgtcggcaatggcggcggaaacggtgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttcatctcgacggatatcagccgtccgagtagtggcggagatcttacgaaacgacggcattttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgcggaattctttggttcctgctgatcatactctttctctgtcaagcaaagccattattggtggaatatctggtgttattgctcaggttgtggcgagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatggtaagtcagggtctgcaacctcgatattgtgggccagttgatgctttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcatggtcccaaatgtccagagagcttttttagttaacatgggagaactagcgtgctatgatcatgcaaagcggtttgtgatcaataacaacctagcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10982" stop="8304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10682" g_stop="10221" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8604" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="707" r_length="251" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E449813" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10682" e_stop="10221"/>
          <exon e_start="8854" e_stop="8604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGA</genome_strand>
        <mrna_strand>CAAGAGTTGAAGAATGGGCCAGCTTCAAAGA--TGAGTGTTTAAGGTCTATAACACTGATGCCCCTCAGGCCTGG---AC-AGCTCAATGAAAGCCCAAGTGTTTAACGATGGCCGGAAAGCCCATACAACAAAGATAGCCGTGACGGCGATGTCGGCAATGGCGGCGGAAACGGTGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCATCTCGACGGATATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCATTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGCGGAATTCTTTGGTTCCTGCTGATCATACTCTTTCTCTGTCAAGCAAAGCCATTATTGGTGGAATATCTGGTGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATGGTAAGTCAGGGTCTGCAACCTCGATATTGTGGGCCAGTTGATGCTTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCATGGTCCCAAATGTCCAGAGAGCTTTTTTAGTTAACATGGGAGAACTAGCGTGCTATGATCATGCAAAGCGGTTTGTGATCAATAACAACCTAGCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307010" ref_strand="+" ref_description="SGN-E307010 [cLEY-11-J12]">
      <seq>gagtttaacgatggccggagagcccatacaacaaaggtagcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggcttcaactccacggcgaatctcttgtttggtctcgacggacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgtcttacactccaattcgaatcgtaaactatgagtttttgaggaattttttggttcctgctgatcatacactgtctctgtcaagcagagctattattggtggaatatctggagttattgctcaagttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtggaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaagtgttcagagagcatttgtagctaacatgggagagctagcgcgctatgatcatgcataacgctctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10883" stop="8325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10583" g_stop="10221" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8625" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="593" r_length="230" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E307010" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10583" e_stop="10221"/>
          <exon e_start="8854" e_stop="8625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGAT</genome_strand>
        <mrna_strand>GAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGGTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTGGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTCTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTGTCTCTGTCAAGCAGAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTGGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAGTGTTCAGAGAGCATTTGTAGCTAACATGGGAGAGCTAGCGCGCTATGATCATGCATAACGCTCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319090" ref_strand="+" ref_description="SGN-E319090 [cTOB-14-J14]">
      <seq>aaagcccaagagtttaacgatggccggagagcccatacaacaaagttggcagtgacggcgatgtcggcaacggcggcggaaacggcgacgtttccggttgacctcatcaagacgaggctttaactccacggcgaatctcttgtttcgtctcgactgacatcagccgtccgagtagtggcggagatcttacgaaacgacggcgttttaggactatacaagggattgtcaccggcgattataaggcatatgttttacactccaattcgaatcgtaaactatgagtttttgaggaatggtttggttcctgctgatcatacactttctctgtgaagcaaagctattattggtggaatatctggagttattgctcaggttgtggcaagcccagctgatcttgtcaaagttaggatgcaagcagacagtagaatagcaagccagggtctacaacctcgatattgcgggccatttgatgccttcaacaagattattcagactgaaggcgtcaggggactttggaaaggcgtgctcccaaatgtccagagagcatttttagttaacatgggagagctagcgtgctatgatcatgcaaaacgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="10892" stop="8330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10592" g_stop="10221" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8854" g_stop="8630" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="597" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E319090" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10592" e_stop="10221"/>
          <exon e_start="8854" e_stop="8630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAGGTAAAGTGAGATTTCATTGATTTTTGGAATTACGTTGTTGTATTGAGCTTAATAAATTGGAGATATTGTGTTAACTCTCCACTAATTCCACGGGATACCATGGGAGTAGAGATTTGAATTTGAGACCTTGTGGTGCTCAACGCATTTCTTTTATTAATTGTATATGAAGGAATTTGACTTGTAAGGGAGGAATATTTTGGTTTGGTGTATGTACTCTGTTAATAGTAGTGTAAGAATGTGTTGTGAAAAAATGGCTGAAAATTAGTTTGATAAGGAAACTATTGTTCAAGGTTTCAACTTTATATAATTAAACATATTGAACCACTGAAAAGTTGGTGTTAAACAGTATTATTAGTAAAGTAGTGTCACAAATTTTGAGTTAGGTGGTCAATAGAGTTGGATACGCGACTAATGCAATGAGTGAGTAGAGCTGATATCTCATTCATATTGCAGAAGTCCATGTGAATTCTGAAAATGTAAACATTAGATTAGAATTTGTTTTCTATAAGCGGTGAATGGTCGGTCATCTTCTTGTTTATAGAGTGGATTGCCTTATTTGTGGTGTCCCCCGCTTCTTTTGCTTACTTTGATGAAGATTAGCCCTTCAAAGAGGAAAAATGTTTTCGTTTGATGGGGATTCATCAGAATCTGAATTGAGTAGAGCAACTAATTGTTCATTCTTTAGGGAAGAGGAATCTCTTTATTACATTGTCAATTCTTCATTTCCTTGGTGCTACCCGAAACTTTTGAGTAAGTGGATGAAGGACTAGTGATCGCCAGAACAAAACTTGGGTATCGTGATTTGTTATTTTTGCGGACTAGAAGAATACAAAGTTCTTTGTAGTTTTTCTTTTTGATTAATTTGCCCATTCCGAGTAAAAAACCAGTTGTCTTAAACATTGTATATAACAGTTTCTGTTTTGAAATTTTATTTACTGTACCGAGACATGTTGGTAGGTGCACTTGGAAGGGTTTATGAAGCGTGTATCTGTTCATGTTTGTGAATTTATCACGCTAGTATGTTTATGGAAACTAAGTAATTCCTTTTTATCTCTCCACCATAGATTGATTCGTCTACAAACCCCTTCTCTTCTCATCTTTAATTTAGTCATTTTTATGATTCCACGTGATGCTATCTTATTTATGTTTTACATCTCTGATATCCTGTAGCTTTGTGCTTGTTGGGAAGAAAGTAAAAAATAACCAGCTAATGCAAATCGATAAAAGAAACCTTGATACTGCTAAGCAGAGAAACAATGATTTGCGACTTGTCTTTACTAGGGTGCTGTACTTGAGCTTTCAATTCCTTACGTCAGCAGGACTTACTGTAGAACATGTTATAGTTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTT</genome_strand>
        <mrna_strand>AAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTGGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTTAACTCCACGGCGAATCTCTTGTTTCGTCTCGACTGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATGGTTTGGTTCCTGCTGATCATACACTTTCTCTGTGAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337263" ref_strand="+" ref_description="SGN-E337263 [cTOE-7-B19]">
      <seq>gtttaagcagtcggaaacaccattgctccgccgcagcgccgcctttttctgttgcgtaagctcatcaaataatcgccaaaaagatgtatagaagtagagccaccatactgacatccaaatcattgagaactctatcaaaggtaagcagacaatctcttcatttagaatcgttaaagttcgttaattttttaagaaataccagtactgctactcaaatatctgagattgataattatagtgagtcaaaggggggaaataacagtgattttcagcaaaacccagatggggatttgaattataactcgaacaatacgggttctttgaataaattaaactggaaggatcaggaatgggcgtataatcagcagttatctcgtagcacgcaaggcggcgggagttatagtggaaattctaggagaatagagcagaaccctagtgaggtttatgagcaaaaaactagaactgaatttcaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11269" stop="12346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11569" g_stop="12046" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E337263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11569" e_stop="12046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATT</genome_strand>
        <mrna_strand>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314341" ref_strand="+" ref_description="SGN-E314341 [cTOA-21-N9]">
      <seq>taagcagtcggaaacaccattgctccgccgcagcgccgcctttttctgttgcgtaagctcatcaaataatcgccaaaaagatgtatagaagtagagccaccatactgacatccaaatcattgagaactctatcaaaggtaagcagacaatctcttcatttagaatcgttaaagttcgttaattttttaagaaataccagtactgctactcaaatatctgagattgataattatagtgagtcaaaggggggaaataacagtgattttcagcaaaacccagatggggatttgaattataactcgaacaatacgggttctttgaataaattaaactggaaggatcaggaatgggcgtataatcagcagttatctcgtagcacgcaaggcggcgggagttatagtggaaattctaggagaatagagcagaaccctagtgaggtttatgagcaaaaaactagaactgaatttcaagaattaaaggataccaaagggtttcagcagaacccacatgcgaaaaatgagaacttttcatctgggtatgttaatgtttcatctagaaatgaatttcagcaaacagttgggagaaacaatgatttcgggtctcgaaaggattatcaaagtgatttagttcataatagaaatgatcgtagttccaggtttgagggaggtttagaagctcagtcgagtcaaaatggagtatatggacactatcaacagaatttaatggggggaaacagtgtaacgtcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11272" stop="12621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11572" g_stop="12321" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E314341" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11572" e_stop="12321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGC</genome_strand>
        <mrna_strand>TAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAATGGGGGGAAACAGTGTAACGTCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708412" ref_strand="+" ref_description="SGN-E708412 [FA35CG09]">
      <seq>cgttgaaacaccattgctccgccgcagcgccgcctttttctgttgcgtaagctcatcaaataatcgccaaaaagatgtatagaagtagagccaccatactgacatccaaatcattgagaactctatcaaaggtaagcagacaatctcttcatttagaatcgttaaagttcgttaattttttaagaaataccagtactgctactcaaatatctgagattgataattatagtgagtcaaaggggggaaataacagtgattttcagcaaaacccagatggggatttgaattataactcgaacaatacgggttctttgaataaattaaactggaaggatcaggaatgggcgtataatcagcagttatctcgtagcacgcaaggcggcgggagttatagtggaaattctaggagaatagagcagaaccctagtgaggtttatgagcaaaaaactagaactgaatttcaagaattaaaggataccaaagggtttcagcagaacccacatgcgaaaaatgagaacttttcatctgggtatgttaatgtttcatctagaaatgaatttcagcaaacagttgggagaaacaatgatttcgggtctcgaaaggattatcaaagtgatttagttcataatagaaatgatcgtagttccaggtttgagggaggtttagaagctcagtcgagtcaaaatggagtatatggacactatcaacagaatttaaatgggggaaacagtgtaacgtcacagcagaatttcaatggcaattacatgagaaacgttggaatgcctcaacaaaacattttccattatgaccctggaaatgtaaggaatgttcaatctgagtatccacaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11282" stop="12729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11577" g_stop="12429" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E708412" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11577" e_stop="12429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAGCAAAACATTTCCAATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</genome_strand>
        <mrna_strand>CGT-TGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAACAAAACATTTTCCATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312329" ref_strand="+" ref_description="SGN-E312329 [cTOA-5-I21]">
      <seq>agattgttgagctcctggacccatgtcgtttggatgaacagtcaaaggcaggttttttggctgtaaaagcatcagacatcgctacggagaaagagaagaagaaatctgctcaaagtcttcttgaggctagaagcaaagttcatgaatatcgtgcgggagataggtcacatcccgatcatgagaagatatatgcattgcttaggggtttaaagcagctaatgaaggaggacggttatataccagagacgaagtttgtgttacatgatgtagaccaagaaactaaagaggacgctttaatggctcacagcgagagattggcttttgctcaaggtcttatgaatagctctgcacgatcaccaatccggattataaagaatctgcgtgtctgtggtgattgccataatgcattaaagattgcttcaaggcttgtcggtcgggaaattatcatgcgagatgctaaaagatttcatcatttaaaagatggattgtgctcgtgtaaggattattggtgaagatcctgaccttcaagtaatacttagtatattactttttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13024" stop="14180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13324" g_stop="13880" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E312329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13324" e_stop="13880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAGGTAATACTTAGTATATTACTTTTTTTATT</genome_strand>
        <mrna_strand>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAAGTAATACTTAGTATATTACTTTTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315248" ref_strand="+" ref_description="SGN-E315248 [cTOA-24-O13]">
      <seq>cagagcacaatttacttgaacccaaagcctcactttttcctctctctctaagtctccttttgtcgggtctaactcaattacaaatctttatatgcatgatttttaatcaattagggttttttctccgccggaaaagtagatttctaaatcatcagtagcaaactttgtaagagcttcacaaatgacgtgcgatacgtcttcatcgggatgcggtttggagaaattggagtcgttgagtgatgattccataacagtgatatcggaaaactggaatggcttttgctcttcttcagaagctcttctcaaaggcagtggtgatttgtcattcagcgatgagtttgtaatgcgagcgaagaatctctgcaaacatggcctttcatctctagttgaacaacacttccttcgttgcattgaggaaatttttgagagaaatggagcaaaaaggttctggagttattttgaaccttacagaaatgctgcaccatctgaaactaataaggatcttattctagaagaagaaattcagcaaataatatgtaaagctttggaagaaatatcatctcaaaagcagttccaggagaagtgcctattattgttggctcgtgctttacagtcctatgaagaagacaaattgcaaggacaagcgaacccagattctactcgagtttatctcctctcgaatatcaactaattgtgtcttcagttctattggctagccttcctcccattttcctgggatacttcactggtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16271" stop="18871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16571" g_stop="16985" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16986" i_stop="17620" i_length="635">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17621" g_stop="17710" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="505" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17711" i_stop="18335" i_length="625">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18336" g_stop="18567" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="735" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E315248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16571" e_stop="16985"/>
          <exon e_start="17621" e_stop="17710"/>
          <exon e_start="18336" e_stop="18567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAGGTCTGCTCAATATTTTTACATCATAGTGTTATTTTGTTTTCAATAAAATGTTCATCTACCGAAAGCAGATTAATATACTAAAACGTCATAGCTACTCAATTTCGCTAAATACAAGTAAAGATTGTTCCTTTTTGGAGGAAAATTGTGACCTGGATCATTGTTTCCTGCATTTGGTTGAGTATAATAGTAGGTGATATATGGTAATTATTCAAGGTATAATATTGGATATAAGTAGAAAAATGGAAAATGAGTTTCGCGCTTAAGTAACTGAATTAGTTTTCTTCTCTTATCATAAATTTTTGATTTTGGAGAAGACAATTTTAACTATTCAAGGGATTTAAATTGGAAATGTGTTGTCACAGTGAATATTTTGGTTGATGAAATCATCTCAATGTTTGAATACCTTGAATTTGAAAATGTTTTCCTCCAAGGTCAATATTCGAAATATTTGCCAATGATTTCATCAACAAAAATATTATATGTGAAAACATTTTCAGCCACACCATGCATACTGATTCATCATTTCCTAAATTTGTGATTTAACCTAGTTTTACATATTTTAAAGCCGGTATGGCCATTATGACTCTACTAGGTGTTCTTTTTGAACTCACGGTGACAGTGTTGTGTTCAAACAGGAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTTGTACGTACATAGAATCCTTTGTCATGTCATTCTACATTAAAGAGAAGACCTATTCTACGGAATTAGAAAAAATAGATTACTACTTGATTTTCACTGGGAACTTTCTGTGTCTGTGCAGATGCAGGATTATTGTTAATGAGAATTCTCTATATTTGTTGTAATTTTTTTTGGATTTTTGTACCTTCGTGTAAAGTTCTACACTTCTGTTCCAATCCAGTCTTACTTTGATAGAGTATCTGTACATTACATGACCTAACAACCCATTTACATCTTTTTAAGTAAGTGATTAAACTTTTTAATGGATTTAGTTATTATATTTTATGATTACCATAGTTTCTTGGTCTTTACTTCTTTCTTTCATTGCTACAAATTTATTGAACACTGTCGCAATTGGCTTATATTTTGAATCTTAGCTTCCTTACACGGCAACTACATTTATTATTTTTGGGAAGTAATTTATATGGAAAAATGTTTGTCAATATTATCTTGTCTAGCTAGTGAATATGGATGGTTATGTACTTGTTATTGCTGCTGATTCCATTTGCCGTATTTATCTTTCTCAAGCGATGACTTGGTTTTAGGGCTTGGAAATTTTATAAGTAAATCCTGATTGGTATTGATGCAGATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCGAAATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTCACCATTTTCCTG</genome_strand>
        <mrna_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCG-AATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTC-CCATTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315172" ref_strand="+" ref_description="SGN-E315172 [cTOA-24-L15]">
      <seq>cagagcacaatttacttgaacccaaagcctcactttttcctctctctctaagtctccttttgtcgggtctaactcaattacaaatctttatatgcatgatttttaatcaattagggttttttctccgccggaaaagtagatttctaaatcatcagtagcaaactttgtaagagcttcacaaatgacgtgcgatacgtcttcatcgggatgcggtttggagaaattggagtcgttgagtgatgattccataacagtgatatcggaaaactggaatggcttttgctcttcttcagaagctcttctcaaaggcagtggtgatttgtcattcagcgatgagtttgtaatgcgagcgaagaatctctgcaaacatggcctttcatctctagttgaacaacacttccttcgttgcattgaggaaatttttgagagaaatggagcaaaaaggttctggagttattttgaaccttacagaaatgctgcaccatctgaaactaataaggatcttattctagaagaagaaattcagcaaataatatgtaaagctttggaagaaatatcatctcaaaagcagttccaggaagagtgcctattattggtggctcgtgctttacagtcctatgaagaagacaaattgcaaagacaagcgaaccagattctactcgagtttatctcctctcgaatatcaactaattgtgtcttcagttctattggctagccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16271" stop="18853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16571" g_stop="16985" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16986" i_stop="17620" i_length="635">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17621" g_stop="17710" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="505" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17711" i_stop="18335" i_length="625">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18336" g_stop="18553" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="721" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E315172" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16571" e_stop="16985"/>
          <exon e_start="17621" e_stop="17710"/>
          <exon e_start="18336" e_stop="18553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAGGTCTGCTCAATATTTTTACATCATAGTGTTATTTTGTTTTCAATAAAATGTTCATCTACCGAAAGCAGATTAATATACTAAAACGTCATAGCTACTCAATTTCGCTAAATACAAGTAAAGATTGTTCCTTTTTGGAGGAAAATTGTGACCTGGATCATTGTTTCCTGCATTTGGTTGAGTATAATAGTAGGTGATATATGGTAATTATTCAAGGTATAATATTGGATATAAGTAGAAAAATGGAAAATGAGTTTCGCGCTTAAGTAACTGAATTAGTTTTCTTCTCTTATCATAAATTTTTGATTTTGGAGAAGACAATTTTAACTATTCAAGGGATTTAAATTGGAAATGTGTTGTCACAGTGAATATTTTGGTTGATGAAATCATCTCAATGTTTGAATACCTTGAATTTGAAAATGTTTTCCTCCAAGGTCAATATTCGAAATATTTGCCAATGATTTCATCAACAAAAATATTATATGTGAAAACATTTTCAGCCACACCATGCATACTGATTCATCATTTCCTAAATTTGTGATTTAACCTAGTTTTACATATTTTAAAGCCGGTATGGCCATTATGACTCTACTAGGTGTTCTTTTTGAACTCACGGTGACAGTGTTGTGTTCAAACAGGAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTTGTACGTACATAGAATCCTTTGTCATGTCATTCTACATTAAAGAGAAGACCTATTCTACGGAATTAGAAAAAATAGATTACTACTTGATTTTCACTGGGAACTTTCTGTGTCTGTGCAGATGCAGGATTATTGTTAATGAGAATTCTCTATATTTGTTGTAATTTTTTTTGGATTTTTGTACCTTCGTGTAAAGTTCTACACTTCTGTTCCAATCCAGTCTTACTTTGATAGAGTATCTGTACATTACATGACCTAACAACCCATTTACATCTTTTTAAGTAAGTGATTAAACTTTTTAATGGATTTAGTTATTATATTTTATGATTACCATAGTTTCTTGGTCTTTACTTCTTTCTTTCATTGCTACAAATTTATTGAACACTGTCGCAATTGGCTTATATTTTGAATCTTAGCTTCCTTACACGGCAACTACATTTATTATTTTTGGGAAGTAATTTATATGGAAAAATGTTTGTCAATATTATCTTGTCTAGCTAGTGAATATGGATGGTTATGTACTTGTTATTGCTGCTGATTCCATTTGCCGTATTTATCTTTCTCAAGCGATGACTTGGTTTTAGGGCTTGGAAATTTTATAAGTAAATCCTGATTGGTATTGATGCAGATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCGAAATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCC</genome_strand>
        <mrna_strand>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAAGAGTGCCTATTATTGGTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAAGACAAGCGAA-CCAGATTCTACTCGAGTTTATCTCCTCTCG-AATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707064" ref_strand="+" ref_description="SGN-E707064 [FA31DH02]">
      <seq>agaggacaaatacaaatataaaagcaactatcaagcatcaaccacagccagagcaaaaggaccttgatatatctctagataatgttaatgctaccatcatatcttcaaatttctggcctcctattcaggatgaggcaatcaacttaccagagcctgtggagcagctactgactgattatgctaaaaggtatactgaagtcaagacaccacgtaagctaatatggaagaaaaatctgggcagtgtaaagttggagctccaattcgaagatagagcaatgcagtttaatgttactcctttgcatgcttcaattattatgcagtttcaagatcagaaaaagtggatatctaagaatcttgcagctgcagttggagtacctgttgatgtgttgaataggaggataaatttttggataagcaagggaattctggcagagtcaatgggggcagactctgctgatcatgcttttactctggtggaaaccatgaatgatactggtaaaagtggaactattgatggaggctgtgaggagctattggcaggtgaggacgacggagaacgctctgtggcctctgttgaagatcaattgcgaaaagagatgactgtctatgagaaatttatcactgggatgcttaccaattttggcagcatggcattggaccgtattcataatactctcaagatgttctgcattgctgatcctacatatgacaaatctctgcaacaactgcaaagctttttatctggtttagttgctgaggagaagttggaattcagagatggaatgtactttctgaaaaagtgatcaattccatctatattgtctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21768" stop="24845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22068" g_stop="22118" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22119" i_stop="22204" i_length="86">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22205" g_stop="22281" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="128" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22282" i_stop="22843" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22844" g_stop="22963" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="248" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22964" i_stop="23110" i_length="147">
            <donor d_prob="0.275" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23111" g_stop="23199" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="337" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23200" i_stop="23294" i_length="95">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23295" g_stop="23376" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="419" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23377" i_stop="23459" i_length="83">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23460" g_stop="23651" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="611" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23652" i_stop="24216" i_length="565">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24217" g_stop="24285" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="680" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24286" i_stop="24397" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24398" g_stop="24545" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="828" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E707064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22068" e_stop="22118"/>
          <exon e_start="22205" e_stop="22281"/>
          <exon e_start="22844" e_stop="22963"/>
          <exon e_start="23111" e_stop="23199"/>
          <exon e_start="23295" e_stop="23376"/>
          <exon e_start="23460" e_stop="23651"/>
          <exon e_start="24217" e_stop="24285"/>
          <exon e_start="24398" e_stop="24545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAGGTATCGGTTGTAAGTTATTTCTCCTGTTCTTGGGATTCCCACAATTTTAATTAATCTCATCGATTTCTGGATTTGTTCGATTACAGAGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAGGTATGCACTTATTCTTACATTTACTGTCACAATAACTTTATTTACTAGCTATTGGTAGTAAAAGTCTTTACTCATCTAGTGGAACATCTTAATCCAATTTGGACAAGAATCTTTGATGTTAAATATGAAAACATTAAATATGAATTGTGCAAGCAAAATATTTCAAACTGAACTGCTCCATTTTATTTTATTGATATTAGTTGTGTTTTCTCCATCCAAAATAATCATAAATTAATGAGTTCTGAATCCTTTATGTTCACAATTCGTGGTCTTAGTCTGAATTAAGTGAATATCCCCTTAAACATTCTTGATAGTTAAGAACATCTTCCTTGTTGATGACAGAGAAGTGATAGTTACTTTCCTTTCTTTTGGGTCCCCCCACCCCCCCACCCACCCCATGTTGCTCGAACTCCTCAACATGGAGGATCGGCATAAGTGCGTCAACATTTTTAGAGAGTCCGAGCAACATACTTAATAGTGTCAATCGTTTGCCTTTATGTAGCTTTCTTTGTTTTGTTTAGTTTTTGCCAGTAAGTAACAAAATCTGGTACATATATGGCAGGATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAGGTCAGTAACTGTACGGTGTACTTGGGACTCGTGTGACTTTCGAAACTACATAAACAGTTGATTTATAATCTCTAGATCTAAGATCACTATTCTCTGCATCCTTTGATATATAACCAAATGCCTGACTGCATTTTTACCGCATTGTAGTTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAAGTAACTTCGCAATCATCTTTGTATTTTTATTTTACCAATTGTTTCAGAGAAGTATTGGGAATGGATGTAAAGGGTATGTACACCTCATGTTGTAGGTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAGGTTAGTTCCTCTCTTCCATTTTCATCAGTAAATGGTTTTCTGGAGTAAGAATTTATTTGATCTTTTTTCACTTGGTTGACTAGGGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAGGTAATCTTTTGACTTTCTTTTTCTTTCTTTTGCATTCAAATGGATCTTTTAAGTATATGAATCTGATACACTCTCTTAACAGTTGAGTGTAAATAGTAGAAGCCTTTTCTTTTCTGTAAAACTATTTTTTTGTGTATTATTGTGGAAGCTTTGGTTGAGTTGCATTAACATCATCATATAATTAGTCCAGAGTCTCTCTTTGCTAATGAGGTACCTGAGTTTTTGAAATATTTGTGCATAGTTCCCTTAGTGATACAGAAAATAATTACTAGTGGATTTCAAAAGCTTAAACATCAGTTGACAGGGAACTCATTGTGAAATTTTTTGCAAGGCAGGACAGAGATGGCTGCATCTTGGCTTGCCATGTTTTATCTACCATTACCAAACCTTACCGCCAATTGGATGTCTATTTAACAAGTCTGAAATGTTTTTATCTTTAAACATAAATTGGCAAGGGTAGTTCATAGTTCTAAGGACAGAAATCCTTCTCGCAAAGAACTAAGGACAAAATAACAGAAAAGAAACACTAGTGTTATGTTTAATGAGATGCTGGTGTTGACTGCAGAAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAGGTAATTAATTATTTGCTTTATAACTCATAAGATTTATAATTGCTTCAGGAACTATGATGTGGCATGAGGCCATGAAATACCGAAGAATTAAAAGTACTAATTGTTGCTGCAGATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</genome_strand>
        <mrna_strand>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAG......................................................................................AGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAG...................................................................................................................................................TTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAA...............................................................................................GTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAG...................................................................................GGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAG................................................................................................................ATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604996" ref_strand="+" ref_description="SGN-E604996 [57015]">
      <seq>cggctgcatgttttttttgaaaatcaaaaggccagtgtattcagtttacatcatatacagcattcagcaaataaacaatggcacccctttctattgaaaacaaatgtgcaatcttctcagtttacatcatatacagaaaataagttaactgtcaactaactgactagctaaccttctataacgaaccagatccaacgtcttctcttggatggctttgtctctttctcatcgcgaaggatctgctaataaatattactaacactctttatgcatttagcataacgagtcgttctaacctacaggaaccttcttgatttgcacttacctcagcttgattaaatagcacacaaatgatggactgcaagaagttaaaagatatgtctgcacttgaaaagagaaaaaaaaaaagagacctctctgcagccaatgtttgttattaccttcttaacgacacgttattgcatttcatcagtctgaggagtgacgataagatttatgccaccaagacaatatagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25317" stop="24226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25012" g_stop="24526" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="520" r_length="490" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E604996" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25012" e_stop="24526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGTGTATTCAGTTTACATCATATACAGCATTCAGCAAATAAACAATGGCACCCCTTTCTATTGAAAACAAATGTGCAATCTTCTCAGTTTACATCATATACAGAAAATAAATGAACTGTTAACTTAATGACTAGCTAACCTTCTATAACGAACCAGATCCAACGTCTACTCTTGGATGGCTTTGTCTCTTTCTCATCGCGAAGGATCTGCTAATAAATATTACTAACAGTC-TTACGCGTTTAGCATATCGAGTCATTCTAACC-ACAGGAATCTTCTTGATTTGCACTTACCCTCAGCTTGATTAAATAGCACGC-AATGATGGACTGCAAGGAATTTACAGATATTTCTGCACTTGAAAAGAG--AAGAAAAAA-AGACCTCTCTGCAGTCAATGTTTGTTATTACCTTCTTAACGACACGTTATTGCATTTCATCAGTCTGAGGAGTGAAGATAAGATTTATGCCACCAATAGACAATATAGATGGA</genome_strand>
        <mrna_strand>GCCAGTGTATTCAGTTTACATCATATACAGCATTCAGCAAATAAACAATGGCACCCCTTTCTATTGAAAACAAATGTGCAATCTTCTCAGTTTACATCATATACAGAAAATAAGTTAACTGTCAACTAACTGACTAGCTAACCTTCTATAACGAACCAGATCCAACGTCTTCTCTTGGATGGCTTTGTCTCTTTCTCATCGCGAAGGATCTGCTAATAAATATTACTAACACTCTTTATGCATTTAGCATAACGAGTCGTTCTAACCTACAGGAACCTTCTTGATTTGCACTTA-CCTCAGCTTGATTAAATAGCACACAAATGATGGACTGCAAGAAGTTAAAAGATATGTCTGCACTTGAAAAGAGAAAAAAAAAAAGAGACCTCTCTGCAGCCAATGTTTGTTATTACCTTCTTAACGACACGTTATTGCATTTCATCAGTCTGAGGAGTGACGATAAGATTTATGCCACC-A-AGACAATATAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558619" ref_strand="+" ref_description="SGN-E558619 [17988]">
      <seq>caaattggaaacacccatttcaagactcttctttgtaaaggtaagattttgcttagtctcaatcaatatgggttggccttggattgttttaaaaaagcaagtcttgatcccaatgagttagaaaattctgaaatgcttaatgggtatttagattagtgtaaaaagtttgaatttttatcaagaactggtgcttttgatatctctgattgggtagtaaataagtttcaaggaaaaccccctcagctagctgagtacattggttcaattgagattaagaaatcggatatcagtgggcgtggattgttcgcgacaaagaatcttgattgtgggaacttgttgttagttactaaggctgttgctgttgaaagagctatagtacctgaatctgtttttcaagattctaaggaacaagctcagttggatatgtggaagaatttcattgataaaatcttggaatctatcaagaaatgtgtacgaacgcgtgatttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25443" stop="26513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25743" g_stop="26236" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E558619" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25743" e_stop="26236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGGAAACACCCATTTCAAGACTCTGCTTTGTAAAGGTAAGATTTTGCTAAGTCTCAATCAATATGGTTTGGCTTTAGATTGTTTTAAGAAAGCAAGTCTTGATCCCAATGAGTTAGAAAATTCTGAAATGCTTAATGGGTATTTAGAGAAGTGTAGAAAGTTTGAATTTTTATCAAGAACTGGTGCTTTTGATATCTCTGATTGGGTACTTAATAAGTTTCAAGGCAAACCCCCTGAGCTAGCTGAGTACATTGGTTCAATAGAGATTAAGAAATCAGATATCAGTGGGCGTGGATTGTTCGCGACAAAGAATCTTGATTGTGGGAGCTTGTTGTTAGTTACTAAAGCTGTTGCTGTTGAAAGAGCTATAGTACCTGAATCTGTTTTTCAAGATTCTAAGGAACAAGCTCAGTTAGATATGTGGAGGAATTTCATTGACAGAATCTTGGAATCTATTAAGAAATGTAATCGAACACGAGATTTGATTAG</genome_strand>
        <mrna_strand>CAAATTGGAAACACCCATTTCAAGACTCTTCTTTGTAAAGGTAAGATTTTGCTTAGTCTCAATCAATATGGGTTGGCCTTGGATTGTTTTAAAAAAGCAAGTCTTGATCCCAATGAGTTAGAAAATTCTGAAATGCTTAATGGGTATTTAGATTAGTGTAAAAAGTTTGAATTTTTATCAAGAACTGGTGCTTTTGATATCTCTGATTGGGTAGTAAATAAGTTTCAAGGAAAACCCCCTCAGCTAGCTGAGTACATTGGTTCAATTGAGATTAAGAAATCGGATATCAGTGGGCGTGGATTGTTCGCGACAAAGAATCTTGATTGTGGGAACTTGTTGTTAGTTACTAAGGCTGTTGCTGTTGAAAGAGCTATAGTACCTGAATCTGTTTTTCAAGATTCTAAGGAACAAGCTCAGTTGGATATGTGGAAGAATTTCATTGATAAAATCTTGGAATCTATCAAGAAATGTGTACGAACGCGTGATTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707960" ref_strand="+" ref_description="SGN-E707960 [FA34BG10]">
      <seq>ccttctcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctcccaatttccttgcttttgtttaaaaaaaacaaagaaaaagaaaaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacaaatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcaaaatttggagacaatgagtggtatttttttacccctaaagataaaaaatatccaaatggtgttaggccaaataaagcacctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtaaaatttataaaaaaaaaaatttggggagaactatagagatgatgaaagttgaaaaaaaaaaattaaaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32391" stop="34360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32690" g_stop="32995" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="587" r_length="281" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34060" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="754" r_length="167" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E707960" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32690" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTG</genome_strand>
        <mrna_strand>CCTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCCCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAAAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAAATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAAAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAAAGATAAAAAATATCCAAATGGTGTTAGGCCAAATAAAGCACCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAAAATTTATAAAAAAAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAAAAAAAAAATTAAAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237900" ref_strand="+" ref_description="SGN-E237900 [cLED-18-P6]">
      <seq>acttctcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttgtgtttaaaaaaggcaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32390" stop="33682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32690" g_stop="32995" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33382" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="583" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32690" e_stop="32995"/>
          <exon e_start="33106" e_stop="33382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTAT</genome_strand>
        <mrna_strand>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTGTGTTTAAAAAAGGCAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233570" ref_strand="+" ref_description="SGN-E233570 [cLED-9-L21]">
      <seq>ctcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32394" stop="33683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32694" g_stop="32995" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33383" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="580" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E233570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32694" e_stop="32995"/>
          <exon e_start="33106" e_stop="33383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATG</genome_strand>
        <mrna_strand>CTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237449" ref_strand="+" ref_description="SGN-E237449 [cLED-19-E13]">
      <seq>ctcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtttttttttacccctagagatagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32394" stop="33461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32694" g_stop="32995" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33161" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="358" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237449" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32694" e_stop="32995"/>
          <exon e_start="33106" e_stop="33161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAA</genome_strand>
        <mrna_strand>CTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTTTTTTTTTACCCCTAGAGATAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242023" ref_strand="+" ref_description="SGN-E242023 [cLED-27-B23]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33381" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="577" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E242023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTA</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231798" ref_strand="+" ref_description="SGN-E231798 [cLED-7-E5]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgcgtattacctgaaaaggcagaatttggagacaatgagtggtattcttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagcgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33365" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="561" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E231798" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCT</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGCGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTCTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGCGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268541" ref_strand="+" ref_description="SGN-E268541 [cLEI-13-K6]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgantatcgtttgagtgattcaaagtctcaaacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33365" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="561" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E268541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCT</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGANTATCGTTTGAGTGATTCAAAGTCTCAAACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228318" ref_strand="+" ref_description="SGN-E228318 [cLED-3-E3]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33357" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="553" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E228318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTC</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268346" ref_strand="+" ref_description="SGN-E268346 [cLEI-13-K5]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33330" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="526" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E268346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATG</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228447" ref_strand="+" ref_description="SGN-E228447 [cLED-3-K13]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33295" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="491" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E228447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACC</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241334" ref_strand="+" ref_description="SGN-E241334 [cLED-28-G11]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggatggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcacaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcatctgtgtcaagttattggaaggctactggcactgataaagcagtttatagcgcaaataaatatgttggaattaaaaaagcacttgttttttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33287" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="483" r_length="182" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241334" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAA</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGATGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCACAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCATCTGTGTCAAGTTATTGGAAGGCTACTGGCACTGATAAAGCAGTTTATAGCGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213912" ref_strand="+" ref_description="SGN-E213912 [cLEC-76-P20]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaattntcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33199" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="396" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E213912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATT-TCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTC</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTNTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240830" ref_strand="+" ref_description="SGN-E240830 [cLED-24-N9]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33199" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="395" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTC</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240871" ref_strand="+" ref_description="SGN-E240871 [cLED-24-P10]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="359" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240871" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAA-ACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAAT</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241869" ref_strand="+" ref_description="SGN-E241869 [cLED-27-M10]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatattcttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33161" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="357" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241869" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAA</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTCTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228113" ref_strand="+" ref_description="SGN-E228113 [cLED-2-P9]">
      <seq>tcattttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32395" stop="33432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32995" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33132" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="328" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E228113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32995"/>
          <exon e_start="33106" e_stop="33132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGT</genome_strand>
        <mrna_strand>TCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367876" ref_strand="+" ref_description="SGN-E367876 [TUS-22-C3]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagattagaggcacaaaatgtgagtactacaaataatgaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="34317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="579" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34017" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="702" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E367876" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTG</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAG-ATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368708" ref_strand="+" ref_description="SGN-E368708 [TUS-22-D2]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="34211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="579" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="33911" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="597" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E368708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="33911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTA</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368003" ref_strand="+" ref_description="SGN-E368003 [TUS-22-D3]">
      <seq>ttttcctccctatagaattaaaaaaaacaaaactaaaattacattttctctcaattcccttgctttggcttaaaaaaaacacagacaaagaagaattgttccattttatttatttctatatttttgcatagaatggtcggagaaattagctctgatcttcctcctggatttaggtttcatccaacaggatcgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcacttatccccgacattgatgtctacaagttcgatccctgcgtattacctgaaaaggcataatttggagacaatgactggtatttttttacccctagagatacgaaaatatccaaatggtggtaggccagatagagcagctgcgccaggctatgggaaggctactgccactgataaagcaatttatagggcacataaatatgttggaattaaaaaagcacttgttttttaccaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtgtgagtgattcaaagtctcacacatctaatcaaagtggatctatgaggttagatgattgggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="34210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="582" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="0.94"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="33910" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="599" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E368003" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="33910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACA-GAT-GAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATA-GAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACT</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAACAAAACTAAAATTACATTTTCTCTCAATTCCCTTGCTTTGGCTTAAAAAAAACACAGACAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGCATAGAATGGTCGGAGAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGGATCGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCACTTATCCCCGACATTGATGTCTACAAGTTCGATCCCTGCGTATTACCTG..............................................................................................................AAAAGGCATAATTTGGAGACAATGACTGGTATTTTTTTACCCCTAGAGATACGAAAATATCCAAATGGTGGTAGGCCAGATAGAGCAGCTGCGCCAGGCTATGGGAAGGCTACTGCCACTGATAAAGCAATTTATAGGGCACATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACCAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTGTGAGTGATTCAAAGTCTCACACATCTAATCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244525" ref_strand="+" ref_description="SGN-E244525 [cLED-38-M7]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="33660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33360" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="553" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E244525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAA</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210911" ref_strand="+" ref_description="SGN-E210911 [cLEC-69-G2]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="33635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33335" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="528" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E210911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATAT</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241277" ref_strand="+" ref_description="SGN-E241277 [cLED-26-H15]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgtttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="33583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33283" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="476" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTA</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237919" ref_strand="+" ref_description="SGN-E237919 [cLED-18-K11]">
      <seq>ttttcctccctatagaattaaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatgggtggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaacatatccaaatggtgttaggccaaatagagcatctgtgtcaggttattggaaggctactggcactgataaagcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32398" stop="33538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32698" g_stop="32995" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33238" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="432" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237919" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32698" e_stop="32995"/>
          <exon e_start="33106" e_stop="33238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCCTATAGAATT-AAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</genome_strand>
        <mrna_strand>TTTTCCTCCCTATAGAATTAAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGGTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAACATATCCAAATGGTGTTAGGCCAAATAGAGCATCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206081" ref_strand="+" ref_description="SGN-E206081 [cLEC-29-A15]">
      <seq>tttcctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32399" stop="33538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32699" g_stop="33238" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E206081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32699" e_stop="33238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</genome_strand>
        <mrna_strand>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393518" ref_strand="+" ref_description="SGN-E393518 [TUS-39-C4]">
      <seq>ctccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32403" stop="34214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32703" g_stop="33386" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33914" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="705" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E393518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32703" e_stop="33386"/>
          <exon e_start="33894" e_stop="33914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGT</genome_strand>
        <mrna_strand>CTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236617" ref_strand="+" ref_description="SGN-E236617 [cLED-13-P17]">
      <seq>tccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="32995" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="573" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E236617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG</genome_strand>
        <mrna_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233354" ref_strand="+" ref_description="SGN-E233354 [cLED-9-O21]">
      <seq>tccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="32995" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33286" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="473" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E233354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="32995"/>
          <exon e_start="33106" e_stop="33286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAA</genome_strand>
        <mrna_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235606" ref_strand="+" ref_description="SGN-E235606 [cLED-15-C9]">
      <seq>tccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="33270" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E235606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="33270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAG</genome_strand>
        <mrna_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241489" ref_strand="+" ref_description="SGN-E241489 [cLED-28-F11]">
      <seq>tccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="33262" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="33262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAAT</genome_strand>
        <mrna_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240412" ref_strand="+" ref_description="SGN-E240412 [cLED-25-P1]">
      <seq>tccctatcgaattaaaaaaaaattaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacacagaaaaagaagaattgttccattttatttattgctatatttttgtataaaatggttggaaaaattagctctgatcttactcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattattcccgaaattgatgtctacaagttcgatccctgggtattacctggctagtacatctaatatatacgtgcactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatattcaaatggtgttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="33179" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240412" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="33179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGG</genome_strand>
        <mrna_strand>TCCCTATCGAATTAAAAAAAAATTAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACACAGAAAAAGAAGAATTGTTCCATTTTATTTATTGCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTACTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATTCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGCTAGTACATCTAATATATACGTGCACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATTCAAATGGTGTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241289" ref_strand="+" ref_description="SGN-E241289 [cLED-26-L19]">
      <seq>tccctatagaattaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32404" stop="33463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32704" g_stop="33163" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32704" e_stop="33163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATA</genome_strand>
        <mrna_strand>TCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378794" ref_strand="+" ref_description="SGN-E378794 [TUS-39-C4]">
      <seq>cctatagaattaaaaaaaaaaaaactaattcttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaattttttaaattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32406" stop="33353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32706" g_stop="33053" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E378794" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32706" e_stop="33053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAA</genome_strand>
        <mrna_strand>CCTATAGAATTAAAAAAAAAAAAACTAATTCTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAATTTTTTAAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207642" ref_strand="+" ref_description="SGN-E207642 [cLEC-32-F7]">
      <seq>ttaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32415" stop="33646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32715" g_stop="32995" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33346" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="522" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E207642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32715" e_stop="32995"/>
          <exon e_start="33106" e_stop="33346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGA</genome_strand>
        <mrna_strand>TTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210040" ref_strand="+" ref_description="SGN-E210040 [cLEC-40-E15]">
      <seq>ttaaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32415" stop="33634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32715" g_stop="32995" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33334" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="510" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E210040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32715" e_stop="32995"/>
          <exon e_start="33106" e_stop="33334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATA</genome_strand>
        <mrna_strand>TTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246313" ref_strand="+" ref_description="SGN-E246313 [cLEF-40-N17]">
      <seq>taaaaaaaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32416" stop="33560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32716" g_stop="32995" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33260" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="435" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E246313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32716" e_stop="32995"/>
          <exon e_start="33106" e_stop="33260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGA</genome_strand>
        <mrna_strand>TAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237611" ref_strand="+" ref_description="SGN-E237611 [cLED-19-E7]">
      <seq>aaaaaaaactaaaatttcattttctctcaatttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32422" stop="33591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32722" g_stop="32995" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33291" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="460" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32722" e_stop="32995"/>
          <exon e_start="33106" e_stop="33291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCA</genome_strand>
        <mrna_strand>AAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242797" ref_strand="+" ref_description="SGN-E242797 [cLED-31-H9]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="34266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="526" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="33966" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="599" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E242797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="33966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTG</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240211" ref_strand="+" ref_description="SGN-E240211 [cLED-25-G16]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="34259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="526" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="33959" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="592" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="33959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATG</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241578" ref_strand="+" ref_description="SGN-E241578 [cLED-36-C23]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="34220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="526" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="33920" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="553" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="33920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATT</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237858" ref_strand="+" ref_description="SGN-E237858 [cLED-18-B2]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="33695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="526" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240129" ref_strand="+" ref_description="SGN-E240129 [cLED-32-B18]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="33630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33330" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="470" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATG</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228197" ref_strand="+" ref_description="SGN-E228197 [cLED-2-O19]">
      <seq>atttccttgcttttgtttaaaaaaaacagagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcacaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="33568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33268" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="408" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E228197" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAA</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAGAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCACAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240747" ref_strand="+" ref_description="SGN-E240747 [cLED-24-M19]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="33559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33259" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="399" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGG</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204730" ref_strand="+" ref_description="SGN-E204730 [cLEC-14-F16]">
      <seq>atttccttgcttttgtttaaaaaaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32451" stop="33538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32751" g_stop="32995" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33238" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="378" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E204730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32751" e_stop="32995"/>
          <exon e_start="33106" e_stop="33238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</genome_strand>
        <mrna_strand>ATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398720" ref_strand="+" ref_description="SGN-E398720 [TUS-45-J9]">
      <seq>aaaacaaagaaaaagaataattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaaggaaaaatttggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32473" stop="34246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32773" g_stop="33386" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33946" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="668" r_length="54" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E398720" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32773" e_stop="33386"/>
          <exon e_start="33894" e_stop="33946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAA-GAAAAATTTGGGGAGAAC</genome_strand>
        <mrna_strand>AAAACAAAGAAAAAGAATAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGGAAAAATTTGGGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397504" ref_strand="+" ref_description="SGN-E397504 [TUS-45-J10]">
      <seq>aaaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32473" stop="34216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32773" g_stop="33386" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33916" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="637" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E397504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32773" e_stop="33386"/>
          <exon e_start="33894" e_stop="33916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAG</genome_strand>
        <mrna_strand>AAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201496" ref_strand="+" ref_description="SGN-E201496 [cLEC-4-O18]">
      <seq>aaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttggttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32474" stop="33635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32774" g_stop="33335" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E201496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32774" e_stop="33335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATAT</genome_strand>
        <mrna_strand>AAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGGTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204738" ref_strand="+" ref_description="SGN-E204738 [cLEC-14-J12]">
      <seq>aaacaaagaaaaagaagaattgttccattttatttatttctatatttttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32474" stop="33463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32774" g_stop="33163" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E204738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32774" e_stop="33163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATA</genome_strand>
        <mrna_strand>AAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421952" ref_strand="+" ref_description="SGN-E421952 [STM-33-H20]">
      <seq>ccaattcattcatttttatatttttctataaaaataatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgatatcaagctacttcgaggccatgccccgtctcaattatccctgaaatcgatgtctacaagttcgatccctgggaattacctgaaaaggcagaatttggagaaaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgtcaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagctcttgtattttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatattctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttgggaaaaactatagagatgatgaaagttgaagaagaagaattggaggcacaaaatgtgagtataaataatgcaattgaagttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattanntttggatcattccacagttactaagtgacatttattatatgatgaccaaagttaccaatgaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32498" stop="34460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32798" g_stop="32995" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="486" r_length="284" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="0.87"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34160" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="745" r_length="259" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E421952" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32798" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTATTTATTTCTATATTTTTGTAT--A-A-AATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAAC--A-TCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTA-TTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAAT</genome_strand>
        <mrna_strand>CCAATTCATTCATTTTTATATTTTTCTATAAAAATAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGATATCAAGCTACTTCGAGGCCATGCCCCGTCTCAATTATCCCTGAAATCGATGTCTACAAGTTCGATCCCTGGGAATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGAAAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTCAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCTCTTGTATTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATATTCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGAAAAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTGGAGGCACAAAATGTGAGTA-T--AAATAATGCAATTGAA---GTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTANNTTTGGATC-ATTCCACAGTTACTAAGTGAC-ATTTATTATATGATGACCAAAGTTAC-CAATGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206082" ref_strand="+" ref_description="SGN-E206082 [cLEC-29-A17]">
      <seq>tatatctttgtataaaatggttggaaaaattagctctgatcttcctcctggatttaggtttcatccatcagatgaggaatgaatcttgtactatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32514" stop="33373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32814" g_stop="33073" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E206082" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32814" e_stop="33073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTA</genome_strand>
        <mrna_strand>TATATCTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCATCAGATGAGGAATGAATCTTGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244570" ref_strand="+" ref_description="SGN-E244570 [cLED-38-F19]">
      <seq>tctgatcttcctcctggatttaagtttcatccagcagatgaggaattaatcatgtcctatcttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctggttagtacatctaatatatacgtgtactcgaaaatcttattaaaatttttaaattcaaataaatatcatttatgattattattattattttgtttttataaaatgtgtagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32548" stop="33477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32848" g_stop="33177" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E244570" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32848" e_stop="33177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTA</genome_strand>
        <mrna_strand>TCTGATCTTCCTCCTGGATTTAAGTTTCATCCAGCAGATGAGGAATTAATCATGTCCTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210643" ref_strand="+" ref_description="SGN-E210643 [cLEC-68-M10]">
      <seq>ttcgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatcaacatttcaatctcagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32609" stop="34597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32909" g_stop="32995" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="368" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="771" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E210643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32909" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATG</genome_strand>
        <mrna_strand>TTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAAT-CAACATTTCAATCTCAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243489" ref_strand="+" ref_description="SGN-E243489 [cLED-34-L19]">
      <seq>cgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32611" stop="34422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="366" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34122" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="595" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E243489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACA</genome_strand>
        <mrna_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232123" ref_strand="+" ref_description="SGN-E232123 [cLED-7-N14]">
      <seq>cgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32611" stop="34384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="366" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34084" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="557" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E232123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATT</genome_strand>
        <mrna_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236390" ref_strand="+" ref_description="SGN-E236390 [cLED-13-I4]">
      <seq>cgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32611" stop="34325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="366" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34025" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="498" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E236390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTT</genome_strand>
        <mrna_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236263" ref_strand="+" ref_description="SGN-E236263 [cLED-20-E21]">
      <seq>cgatatcaagctacttcaaggccttgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32611" stop="34316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="366" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34016" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="489" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E236263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATT</genome_strand>
        <mrna_strand>CGATATCAAGCTACTTCAAGGCCTTGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378038" ref_strand="+" ref_description="SGN-E378038 [TUS-21-F18]">
      <seq>cgatatcaagctacttcaaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcanataaatatgttggaattaaaaaagcacttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32611" stop="33581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32995" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33281" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="261" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E378038" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32995"/>
          <exon e_start="33106" e_stop="33281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTT</genome_strand>
        <mrna_strand>CGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCANATAAATATGTTGGAATTAAAAAAGCACTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238466" ref_strand="+" ref_description="SGN-E238466 [cLED-17-C5]">
      <seq>aaggccatgccctgtctcaattatccccgaaattgatgtctacaagttcgatccctgggtattacctgaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgacccaagttacacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32628" stop="34454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32928" g_stop="32995" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33106" g_stop="33386" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="349" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33894" g_stop="34154" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="610" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E238466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32928" e_stop="32995"/>
          <exon e_start="33106" e_stop="33386"/>
          <exon e_start="33894" e_stop="34154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATG</genome_strand>
        <mrna_strand>AAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG..............................................................................................................AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCCAAGTTACACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393713" ref_strand="+" ref_description="SGN-E393713 [TUS-42-I4]">
      <seq>gtagaaaaggcagaatttggagacaatgagtggtatttttttacccctaaagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32802" stop="33562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33102" g_stop="33262" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E393713" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33102" e_stop="33262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAAT</genome_strand>
        <mrna_strand>GTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAAAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233721" ref_strand="+" ref_description="SGN-E233721 [cLED-14-A19]">
      <seq>tagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32803" stop="34383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33103" g_stop="33386" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34083" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="474" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E233721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33103" e_stop="33386"/>
          <exon e_start="33894" e_stop="34083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAAT</genome_strand>
        <mrna_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233384" ref_strand="+" ref_description="SGN-E233384 [cLED-9-M12]">
      <seq>tagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32803" stop="34277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33103" g_stop="33386" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33977" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="368" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E233384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33103" e_stop="33386"/>
          <exon e_start="33894" e_stop="33977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAA</genome_strand>
        <mrna_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244684" ref_strand="+" ref_description="SGN-E244684 [cLED-38-E2]">
      <seq>tagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgagggtagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32803" stop="34262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33103" g_stop="33386" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="33962" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="353" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E244684" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33103" e_stop="33386"/>
          <exon e_start="33894" e_stop="33962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAA</genome_strand>
        <mrna_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241441" ref_strand="+" ref_description="SGN-E241441 [cLED-28-A21]">
      <seq>tagaaaaggcagaatttggagacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccacccaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32803" stop="33685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33103" g_stop="33385" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241441" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33103" e_stop="33385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAG</genome_strand>
        <mrna_strand>TAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCCAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232868" ref_strand="+" ref_description="SGN-E232868 [cLED-8-E14]">
      <seq>gacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32823" stop="34437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33123" g_stop="33386" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34137" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="508" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E232868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33123" e_stop="33386"/>
          <exon e_start="33894" e_stop="34137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATG</genome_strand>
        <mrna_strand>GACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238049" ref_strand="+" ref_description="SGN-E238049 [cLED-22-A11]">
      <seq>gacaatgagtggtatttttttacccctagagatagaaaatatccaaatggtgttaggccaaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32823" stop="34435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33123" g_stop="33386" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34135" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="506" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E238049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33123" e_stop="33386"/>
          <exon e_start="33894" e_stop="34135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGA</genome_strand>
        <mrna_strand>GACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228521" ref_strand="+" ref_description="SGN-E228521 [cLED-3-J10]">
      <seq>caaatagagcagctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32881" stop="34511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33181" g_stop="33386" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34211" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="524" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E228521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33181" e_stop="33386"/>
          <exon e_start="33894" e_stop="34211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACA</genome_strand>
        <mrna_strand>CAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241659" ref_strand="+" ref_description="SGN-E241659 [cLED-36-C11]">
      <seq>ctgtgtcaggttattggaaggctactggcactgataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32893" stop="34571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33193" g_stop="33386" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34271" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="572" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E241659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33193" e_stop="33386"/>
          <exon e_start="33894" e_stop="34271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTG</genome_strand>
        <mrna_strand>CTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240588" ref_strand="+" ref_description="SGN-E240588 [cLED-21-B21]">
      <seq>tgtgtcaggttattggaaggctactggcanggataaagcaatttatagtgcaaataaatatgttggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacattgaaattaccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32894" stop="34356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33194" g_stop="33386" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34056" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="356" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E240588" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33194" e_stop="33386"/>
          <exon e_start="33894" e_stop="34056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAA</genome_strand>
        <mrna_strand>TGTGTCAGGTTATTGGAAGGCTACTGGCANGGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACATTGAAATTACCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235353" ref_strand="+" ref_description="SGN-E235353 [cLED-11-H3]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatatatttatatgaaggctattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34454" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="691" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E235353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATG</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243565" ref_strand="+" ref_description="SGN-E243565 [cLED-34-M19]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34432" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="669" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E243565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATA</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231124" ref_strand="+" ref_description="SGN-E231124 [cLED-5-A19]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34323" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="560" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E231124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCAT</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237728" ref_strand="+" ref_description="SGN-E237728 [cLED-19-D24]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34323" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="560" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E237728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCAT</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378064" ref_strand="+" ref_description="SGN-E378064 [TUS-21-N6]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaattcaacatttcaatcttagtgatgatcaatagcggagacagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34319" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="556" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E378064" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTT</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATTCAACATTTCAATCTTAGTGATGATCAATAGCGGAGACAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376869" ref_strand="+" ref_description="SGN-E376869 [TUS-19-D3]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34319" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="556" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E376869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTT</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377331" ref_strand="+" ref_description="SGN-E377331 [TUS-21-C4]">
      <seq>tggaattaaaaaagcacttgttttttacaaaggcaaaccaccaaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaattatataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacatacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcatcaaccactttttgtgaatccaacatttcaatctcagtgatgatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32957" stop="34604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33257" g_stop="33386" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34304" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="542" r_length="412" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E377331" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33257" e_stop="33386"/>
          <exon e_start="33894" e_stop="34304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATT-TATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATA</genome_strand>
        <mrna_strand>TGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTATATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACATACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCATCAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367875" ref_strand="+" ref_description="SGN-E367875 [TUS-22-C3](-)">
      <seq>caaaaggtgtcaagactgattggatcatgcatgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatatatttatatgaaggctattggatgaaaaggtgacatcaaaagtttatgacaacaattgtaaaatataatcaaatgttatgtcattagtattattagcaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32998" stop="34833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33298" g_stop="33386" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34539" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="735" r_length="646" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E367875" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33298" e_stop="33386"/>
          <exon e_start="33894" e_stop="34539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGT</genome_strand>
        <mrna_strand>CAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421953" ref_strand="-" ref_description="SGN-E421953 [STM-33-H20]">
      <seq>caagactgattggatcatgcatgaatatcgttgnagtgattcaaagtctcaaacatattctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttgggaaaaactatagagatgatgaaagttgaagaagaagaattggaggcacaaaatgtgagtataaataatgcaattgaagttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacagttactaagtgacaatttattatatgatgaccaaagttacacaatgaataatgtgagtaacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagtaataattgtaatattttcttcaattatcagcagccactttttgtgaatccaacgtttcaatcccagtgataatcagtagtggagacagaattttcatcaagaattttctaaatagattctcagttatatcaagggggttcaatatgtatatagatatatatatatatacaatgtatttttccgacaaagggtttccgcccccggtgaaaatatatttatatggaggcgattggatgaaaaggtgacatcagaagtttatgataaggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33008" stop="34782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33308" g_stop="33386" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="0.83"/>
            <acceptor a_prob="0.794" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34488" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="679" r_length="597" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E421953" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421953" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33308" e_stop="33386"/>
          <exon e_start="33894" e_stop="34488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAAC--A-TCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATG----TAGATA-AT-TATATATA-AA-ATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTG</genome_strand>
        <mrna_strand>CAAGACTGATTGGATCATGCATGAATATCGTTGNAGTGATTCAAAGTCTCAAACATATTCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGAAAAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTGGAGGCACAAAATGTGAGTA-T--AAATAATGCAATTGAA---GTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAGTTACTAAGTGACAATTTATTATATGATGACCAAAGTTACACAATGAATAATGTGAGTAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGTAATAATTGTAATATTTTCTTCAATTATCAGCAGCCACTTTTTGTGAATCCAACGTTTCAATCCCAGTGATAATCAGTAGTGGAGACAGAATTTTCATCAAGAATTTTCTAAATAGATTCTCAGTTATATCAAGGGGGTTCAATATGTATATAGATATATATATATATACAATGTATTTTTCCGACAAAGGGTTTCCGCCCCCGGTGAAAATATATTTATATGGAGGCGATTGGATGAAAAGGTGACATCAGAAGTTTATGATAAGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368002" ref_strand="+" ref_description="SGN-E368002 [TUS-22-D3](-)">
      <seq>gattggatcatgcatgaatatcgtctgagtacttcaaagtctcaaacatataaccatagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatctggggagaactatagagatgatgaaagttcaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgctggtgtgaccaccatcaatgaaatttccaagaatttgttcattgtcacatctattgcaattggatatattttggatctattccacaattactaagtgccaatttattatatgatgaccaaggttacgcaatgaataatgtcaataacacaagtaatgtggatcaagtatcatctcatcaacaaaatacaaataatattacaagctataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaataacggagacagaattttcatcaagaatcttttaaatagattctcagtctatatcaaaggggttcaatatgtagtataattcactatataaaatatttcttcaacgaagaggttcatggccgggatgaaaactatatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33015" stop="34738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33315" g_stop="33386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="0.88"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34438" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="625" r_length="553" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E368002" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33315" e_stop="33386"/>
          <exon e_start="33894" e_stop="34438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTG-GACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGAT-TATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGT-TATATCAAAGGGGTTCAATATGTAG-ATAATT-A-TATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGG-TGAAAA-TATATTTATA</genome_strand>
        <mrna_strand>GATTGGATCATGCATGAATATCGTCTGAGTACTTCAAAGTCTCAAACATATAACCATAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATCTGGGGAGAACTATAGAGATGATGAAAGTTCAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGCTGGTGTGACCACCATCAATGAAATTTCCAAGAATTTGTTCATTGTCACATCTATTGCAATTGGATATATTTTGGATCTATTCCACAATTACTAAGTGCCAATTTATTATATGATGACCAAGGTTACGCAATGAATAATGTCAATAACACAAGTAATGTGGATCAAGTATCATCTCATCAACAAAATACAAATAATATTACAAGCTATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAACGGAGACAGAATTTTCATCAAGAATCTTTTAAATAGATTCTCAGTCTATATCAAAGGGGTTCAATATGTAGTATAATTCACTATATAAAATATTTCTTCAACGAAGAGGTTCATGGCCGGGATGAAAACTATATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201559" ref_strand="+" ref_description="SGN-E201559 [cLEC-4-N12]">
      <seq>tgaatatcgtttgagtgattcaaagtctcaaacatctaagcaaagtggatctatgaggttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33029" stop="34704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33329" g_stop="33386" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33894" g_stop="34404" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="569" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E201559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33329" e_stop="33386"/>
          <exon e_start="33894" e_stop="34404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGGGTAAGAATTAACATCGTTAATTTGTCGCTAAAATAGTGCGTAACTGACATGATTTTTCGATAATATGTGTCTTAAGTAGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACG</genome_strand>
        <mrna_strand>TGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242015" ref_strand="+" ref_description="SGN-E242015 [cLED-27-M20]">
      <seq>agagttagctatggattttgttgttgtttaatgataaaagtaacttgatagtcgctaattcttgttttaaaaaaaaagttttaatcatttcgctagttaccccaaaaaaaaagaaaattgaaattagctatgaattctatcgttaatctgttgattttctctgtaattgtgatttgacatgtggtctaatagccatgaattattttagtaagggcaaaatagatattttgaagttaagttattatttaatataaaaatgcatcagtattgtttagattgattaaaaaggaaagtgagtcatatatatatatatgaactgggacaaaagaaatattattttatatcaggtgtattattcggatttatttctttcttttgatgaagaattaagctaatattcttttttttcttggctatttttttttttcagttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33164" stop="34246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33464" g_stop="33946" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E242015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33464" e_stop="33946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAAC</genome_strand>
        <mrna_strand>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352228" ref_strand="+" ref_description="SGN-E352228 [cTOS-13-L9]">
      <seq>ttaatctgttgattttctctgtaattgtgatttgacatgtggtctaatagccatgaattattttagtaagggcaaaatagatattttgaagttaagttattatttaatataaaaatgcatcagtattgtttagattgattaaaaaggaaagtgagtcatatatatatatatgaactgggacaaaagaaatattattttatatcaggtgtattattcggatttatttctttcttttgatgaagaattaagctaatattcttttttttcttggctatttttttttttcagttagatgattgggtactatgtagaatttataagaagaaaaatttggggagaactatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33306" stop="34439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33606" g_stop="34139" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E352228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33606" e_stop="34139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGAC</genome_strand>
        <mrna_strand>TTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393516" ref_strand="+" ref_description="SGN-E393516 [TUS-39-C4](-)">
      <seq>aatttataagaagaaaaatttggggagaaatatagagatgatgaaagttgaagaagaagaattagaggcacaaaatgtgagtactacaaataatgaaattgaagttgttggtggaccacaaacaatgaaattaccaagaatttgttcattgtcacatctattggaattggattattttggatcaattccacaattactaagtgacaatttattatatgatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatttcagtgatgatcaatagcggagacagaattttcatcaagaatcttctaaatagattttcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatatatttatatgaaggctattggatgaaaaggtgacatcaaaagtttatgacaacaattgtaaaatataatcaaatgttatgtcattagtattattagcaacaaaccttgtagtagggcaacaaattgttgttgtattattttagaatttagtttttcagtttgtatttggaaaaaaaaaactaatttactttgtgaaattttaataaatatttttcagtattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33617" stop="34954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33917" g_stop="34653" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E393516" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33917" e_stop="34653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT</genome_strand>
        <mrna_strand>AATTTATAAGAAGAAAAATTTGGGGAGAAATATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATTTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTTTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTTTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397503" ref_strand="-" ref_description="SGN-E397503 [TUS-45-J10](-)">
      <seq>ttttttttttttttttaaaatactgaaaaatatttattaaaatttcacaaagtaaattagttttttttttccaaatacaaactgaaaaactaaattctaaaataatacaacaacaatttgttgccctactacaaggtttgttgctaataatactaatgacataacatttgattatattttacaattgttgtcataaacttttgatgtcaccttttcatccaatacccttcatataaatatattttcacccggccatgaacctcttcgttgaaaaaatattttatatataattatctacatattgaacccctttgatataactgaaaatctatttagaaaattcttgatgaaaattctgtctccgctattgatcatcactgagattgaaatgttggattcacaaaaagtggttgttgataattgaaaaaaatattacaattattgcttgtaatattatttgtattttgttgttgtgatgatacttgatccacattacttgtgttattcacattattcattgtgtaaccttggtcatcatataataaattgtcacttagtaattgtggaattgatccaaaataatccaattccaatagatgtgacaatgaacaaattcttggtaatttcattgtttgtggtccaccaacaacttcaatttcattatttgtagtactcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="70427" stop="33689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35181" g_stop="35168" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35167" i_stop="34656" i_length="512">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="33989" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="681" r_length="667" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E397503" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397503" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35181" e_stop="35168"/>
          <exon e_start="34655" e_stop="33989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTCTAGTGGTGATATATGCTCTTCTTATTGCTTTGTTCTATTTTCCTCATTTATGTGGAATTTTTTAATTTTTTAAAATTGGTCTCTCATTTCCTTGATTATTATATTCATTAACTTCAATATGAATTTAAGTTAGGTAGGGATAATCATACAAAAAGTATCACACTTAAGTTAGCTAAGAGATAATTCATGTAATTTTTTAATGATAAATATTAATTAATTCTTAATCTAATAAAAATATTTACTAATGAACCAATTGGATAATTCGATTCGATTTTGAATATTATTCGAAAAGTCTTACTTAGGAGTATGATTAATTTTTCTACGCGGATTTACATCACATAATTAACTTTTAAAAAATAAGTCTCCTTCAAAAATAATACTAATAAATTAGGTAATTCATTAATGTAAACTATCCTTATGCTACTAATCAGAAGACAAAAAACCAAAGAAAAGAAAATTGAATAGTAAAATTATTGACATTTCATTGTAGAATTTTTTTTAAAAAAAATCAAAGATAGAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAGAATCTATTTAGAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATTGTGTAACCTTGGTCATCATATAATAAATTGTCACTTAGTAATTGTGGAATTGATCCAAAATAATCCAATTCCAATAGATGTGACAATGAACAAATTCTTGGTAATTTCATTGTTTGTGGTCCACCAACAACTTCAATTTCATTATTTGTAGTACTCACATTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAAAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATACCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAAAATCTATTTAGAAAATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAAAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATTGTGTAACCTTGGTCATCATATAATAAATTGTCACTTAGTAATTGTGGAATTGATCCAAAATAATCCAATTCCAATAGATGTGACAATGAACAAATTCTTGGTAATTTCATTGTTTGTGGTCCACCAACAACTTCAATTTCATTATTTGTAGTACTCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397385" ref_strand="-" ref_description="SGN-E397385 [TUS-45-J9](-)">
      <seq>ttttttttttttttttagaatacagaaaaatatttattaaaatttcacaaaataaattaattttttttttccaaatacaaactgaaaaactaaattctaaaataatacaacaacaatttgttgccctactacaaggtttgttgcaaataatactaatgacataacatttgattatattttacaattgttgtcataaacttttgatgtcaccttttcatccaatacccttcatataaatatattttcacccggccatgaacctcttcgttgaaaaaatattttatatataattatctacatattgaacccctttgatataactgaaaatctatttagaaaattcttgatgaaaattctgtctcccctattgatcatcactgagattgaaatgttggattcacaaaaagtggttgttgataattgaaaaaaatattacaattattgcttgtaatattatttgtattttgttgttgtgatgatacttgatccacattacttgtgttattcacattattcattgagtaaccttggtcatcatataataaattgtcacttactaattgtggaattgcatccaaataatccaattccaatagatgtgacaatgaacaaattcttggtaatttcattgtttgtggaccaccaacaactttcatttcattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="70427" stop="33705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35181" g_stop="35168" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35167" i_stop="34656" i_length="512">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34005" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="665" r_length="651" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E397385" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35181" e_stop="35168"/>
          <exon e_start="34655" e_stop="34005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTCTAGTGGTGATATATGCTCTTCTTATTGCTTTGTTCTATTTTCCTCATTTATGTGGAATTTTTTAATTTTTTAAAATTGGTCTCTCATTTCCTTGATTATTATATTCATTAACTTCAATATGAATTTAAGTTAGGTAGGGATAATCATACAAAAAGTATCACACTTAAGTTAGCTAAGAGATAATTCATGTAATTTTTTAATGATAAATATTAATTAATTCTTAATCTAATAAAAATATTTACTAATGAACCAATTGGATAATTCGATTCGATTTTGAATATTATTCGAAAAGTCTTACTTAGGAGTATGATTAATTTTTCTACGCGGATTTACATCACATAATTAACTTTTAAAAAATAAGTCTCCTTCAAAAATAATACTAATAAATTAGGTAATTCATTAATGTAAACTATCCTTATGCTACTAATCAGAAGACAAAAAACCAAAGAAAAGAAAATTGAATAGTAAAATTATTGACATTTCATTGTAGAATTTTTTTTAAAAAAAATCAAAGATAGAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAGAATCTATTTAGAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATTGTGTAACCTTGGTCATCATATAATAAATTGTCACTTAGTAATTGTGGAATTG-ATCCAAAATAATCCAATTCCAATAGATGTGACAATGAACAAATTCTTGGTAATTTCATTGTTTGTGGTCCACCAACAACTTCAATTTCATTATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATACAGAAAAATATTTATTAAAATTTCACAAAATAAATTAATTTTTTTTTTCCAAATACAAACTGAAAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCAAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATACCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAAAATCTATTTAGAAAATTCTTGATGAAAATTCTGTCTCCCCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAAAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATTGAGTAACCTTGGTCATCATATAATAAATTGTCACTTACTAATTGTGGAATTGCATCC-AAATAATCCAATTCCAATAGATGTGACAATGAACAAATTCTTGGTAATTTCATTGTTTGTGGACCACCAACAACTTTCATTTCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378037" ref_strand="+" ref_description="SGN-E378037 [TUS-21-F18](-)">
      <seq>atttgttcattgtcacatctattggaattgaattattttggatcaattccacaattattaagtgacaatttattatataatgaccaaggttacacaatgaataatgtgaataacacaagtaatgtggatcaagtatcatcacaacaacaaaatacaaataatattacaagcaataattgtaatattttcttcaattatcaacaaccactttttgtgaatccaacatttcaatctcagtgatgatcaatagcggagacagaattttcatcaagaatcttttaaatagattctcagttatatcaaaggggttcaatatgtagataattatatataaaatattttttcaacgaagaggttcatggccgggtgaaaatatatttatatgaaggctattggatgaaaaggtgacatcaaaagtttatgacaacaattgtaaaatataatcaaatgttatgtcattagtattattagcaacaaaccttgtagtagggcaacaaattgttgttgtattattttagaatttagtttctcagtttgtattggaaaaaaaaaactaatttactttgtgaaattttaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33756" stop="34939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34056" g_stop="34636" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="590"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E378037" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34056" e_stop="34636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAA</genome_strand>
        <mrna_strand>ATTTGTTCATTGTCACATCTATTGGAATTGAATTATTTTGGATCAATTCCACAATTATTAAGTGACAATTTATTATATAATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTTTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTA-TTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376868" ref_strand="-" ref_description="SGN-E376868 [TUS-19-D3](-)">
      <seq>tttttttttttttttttttttttttttaaaatactgaaaaatatttattaaaatttcacaaagtaaattagttttttttttccaaatacaaactgagaaactaaattctaaaataatacaacaacaatttgttgccctactacaaggtttgttgctaataatactaatgacataacatttgattatattttacaattgttgtcataaacttttgatgtcaccttttcatccaatagccttcatataaatatattttcacccggccatgaaccttttcgttgaaaaaatattttatatataattatttacatattgaacccctttgatataactgagaatttatttaaaagattcttgatgaaaattctgtctccgctattgatcatcactgagattgaaatgttggattcacaaaaagtggttgttgataattgaagaaaatattacaattattgcttgtaatattatttgtattttggtgttgggatgatacttgatccacattacttgtgttattcacattattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68956" stop="33851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35109" g_stop="35085" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.560"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35084" i_stop="34656" i_length="429">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34151" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="530" r_length="505" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E376868" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376868" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35109" e_stop="35085"/>
          <exon e_start="34655" e_stop="34151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTTTTAAAATTGGTCTCTCATTTCCTTGATTATTATATTCATTAACTTCAATATGAATTTAAGTTAGGTAGGGATAATCATACAAAAAGTATCACACTTAAGTTAGCTAAGAGATAATTCATGTAATTTTTTAATGATAAATATTAATTAATTCTTAATCTAATAAAAATATTTACTAATGAACCAATTGGATAATTCGATTCGATTTTGAATATTATTCGAAAAGTCTTACTTAGGAGTATGATTAATTTTTCTACGCGGATTTACATCACATAATTAACTTTTAAAAAATAAGTCTCCTTCAAAAATAATACTAATAAATTAGGTAATTCATTAATGTAAACTATCCTTATGCTACTAATCAGAAGACAAAAAACCAAAGAAAAGAAAATTGAATAGTAAAATTATTGACATTTCATTGTAGAATTTTTTTTAAAAAAAATCAAAGATAGAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAGAATCTATTTAGAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTTTTCGTTGAAAAAATATTTTATATATAATTATTTACATATTGAACCCCTTTGATATAACTGAGAATTTATTTAAAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGGTGTTGGGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393711" ref_strand="+" ref_description="SGN-E393711 [TUS-42-I4](-)">
      <seq>ttaacgaagaggttcatggccgggtgaaaatatatttatatgaaggttattggatgaaaaggtgacatcaaaagtttttgacaacaattgtaaaatataatcaaatgttatgtcattagtattattagcaacaaaccttgtagtagggcaacaaattgttgttgtattattttagaatttagtttttcagtttgtatttggaaaaaaaaaactaatttactttgtgaaattttaataaatattttaaagtattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="34099" stop="34954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34399" g_stop="34653" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="266"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E393711" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34399" e_stop="34653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT</genome_strand>
        <mrna_strand>TTAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGTTATTGGATGAAAAGGTGACATCAAAAGTTTTTGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTTTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTAAAGTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295887" ref_strand="+" ref_description="SGN-E295887 [cLET-27-O5]">
      <seq>tttttttcaacacaaaaatgaccactttcacaaatcctacaactttgttccatccaaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtggacgcaaactcattgtgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaaaagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagggatgttggagactaactcatggaggtatgtattgttttatatacgacttaaatcagcttatcttaaacaggacgtgaagaatgccttatccagggtgcctgaaagtcgaaaagagtcttatattaaaactgtcaatgagcttactgataacatggctgagtttgattactacattcgaacaccaaaggtatatgaatctcgtgtattctatgagaagacgttgaaatcaattgatgaattggtgggattacttgcataataatatcatcaggctcaaaggtgagtgaatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40148" stop="41471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40448" g_stop="40947" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41171" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="634" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E295887" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40448" e_stop="40947"/>
          <exon e_start="41038" e_stop="41171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGT</genome_strand>
        <mrna_strand>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTGGACGCAAACTCATTGTGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAAAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGGGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAG..........................................................................................TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295052" ref_strand="+" ref_description="SGN-E295052 [cLET-40-O19]">
      <seq>accactttcacaaatcctacaactttgttccatccaaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcatatggactacatagtattaaagagatgttggagactaactcatggaggtatgtattgttttatatacgacttaaatcatcttatcttaaacaggacgtgaagaatgccttatccagcgtgcctgaaagtcgaaaagagtcttatattaaaactgtcaatgagcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40168" stop="41232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40468" g_stop="40932" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E295052" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40468" e_stop="40932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACT</genome_strand>
        <mrna_strand>ACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCATATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCATCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGCGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467330" ref_strand="+" ref_description="SGN-E467330 [cSTB-46-G14]">
      <seq>ctttcacaaatcctacaactttgttccatccaaaaatcacaataaccaaaactcatcacacacaatgcaagacattacccaaaatccaatcaaacttatcaactaatgaagagaatttctcatgtagacgaaaacttatcgcgacttttctagccactccattgacactaggcctgcaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgccaaacagcagatggactacatagtattaaggaaatgttggagactaactcatggaggtatgtcttgttttatattcgtcttaaatcagcttatcttaaacaggacatgaagaatgccttgtccagggtgcctgaaagtcgaaaagagtcttatattaaaactgccaatgagcttactgataacatggctgagtttgattactacattcgaacaccaaaggtatatgaatctcgtgtattctatgagaagacgttgaaatcgattgatgaattggtgggattacttgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40172" stop="41437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40472" g_stop="40947" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41137" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="576" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E467330" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40472" e_stop="40947"/>
          <exon e_start="41038" e_stop="41137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAAT</genome_strand>
        <mrna_strand>CTTTCACAAATCCTACAACTTTGTTCCATCCAAAAATCACAATAACCAAAACTCATCACACACAATGCAAGACATTACCCAAAATCCAATCAAACTTATCAACTAATGAAGAGAATTTCTCATGTAGACGAAAACTTATCGCGACTTTTCTAGCCACTCCATTGACACTAGGCCTGCAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGCCAAACAGCAGATGGACTACATAGTATTAAGGAAATGTTGGAGACTAACTCATGGAGGTATGTCTTGTTTTATATTCGTCTTAAATCAGCTTATCTTAAACAGGACATGAAGAATGCCTTGTCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGCCAATGAGCTTACTGATAACATGGCTGAG..........................................................................................TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCGATTGATGAATTGGTGGGATTACTTGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475852" ref_strand="+" ref_description="SGN-E475852 [cSTB-42-A18]">
      <seq>ctttcacaaattctacaactctgttccatccaaaaatcacaataaccaaaactcatcacacacaatgcatgacattacccaaaatccaatcaaacttatcaactaatgaagagaatttctcatgtagacgaaaacttatcgcgacttttctagccactccattgacactaggcctgcaattcacccctttatcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgccaaacagcagatggactacatagtattaaggaaatgttggagactaactcatggaggtatgtcttgttttatattcgtcttaaatcagcttatcttaaacaggacatgaagaatgccttgtccagggtgcctgaaagtcgaaaagagtcttatattaaaactgccaatgagcttactgataacatggctgagtttgattactacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40172" stop="41249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40472" g_stop="40947" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41052" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="491" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E475852" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40472" e_stop="40947"/>
          <exon e_start="41038" e_stop="41052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATT</genome_strand>
        <mrna_strand>CTTTCACAAATTCTACAACTCTGTTCCATCCAAAAATCACAATAACCAAAACTCATCACACACAATGCATGACATTACCCAAAATCCAATCAAACTTATCAACTAATGAAGAGAATTTCTCATGTAGACGAAAACTTATCGCGACTTTTCTAGCCACTCCATTGACACTAGGCCTGCAATTCACCCCTTTATCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGCCAAACAGCAGATGGACTACATAGTATTAAGGAAATGTTGGAGACTAACTCATGGAGGTATGTCTTGTTTTATATTCGTCTTAAATCAGCTTATCTTAAACAGGACATGAAGAATGCCTTGTCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGCCAATGAGCTTACTGATAACATGGCTGAG..........................................................................................TTTGATTACTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340511" ref_strand="+" ref_description="SGN-E340511 [cTOF-1-B22]">
      <seq>ttcacaaatcctacaactttgttccatccaaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagaagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagagatgttggagactaactcatggagaatttttcgaggttctattcagtgttatggatatttctatgtattttcttcgtctgcagtttgattactacattcgaacaccaaaggtatatgaatctcgtgtattctatgagaagacgttgaaatcaattgatgaattggtgggattacttgcataataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40174" stop="41441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40474" g_stop="40811" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40812" i_stop="40978" i_length="167">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40979" g_stop="41150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="511" r_length="172" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E340511" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40474" e_stop="40811"/>
          <exon e_start="40979" e_stop="41150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAG-AGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGC</genome_strand>
        <mrna_strand>TTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAG.......................................................................................................................................................................AATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299098" ref_strand="+" ref_description="SGN-E299098 [cLET-42-G12]">
      <seq>aactttgttccatccaaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagagatgttggagactaactcatggaggtatgtattgttttatatacgacttaaatcagcttatcttaaacaggacgtgaagaatgccttatccagggtgcctgaaagtcgaaaagagtcttatattaaaactgtcaatgagcttactgataacatgtgctgagtttgattactacattcgaacaccaaaggtatatgaatctcgcgtattctatgagaagacgttgaaatcaattgatgaattggtgggattacttgcataataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40188" stop="41442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40488" g_stop="40947" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41142" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="566" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E299098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40488" e_stop="40947"/>
          <exon e_start="41038" e_stop="41142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATG-GCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATAT</genome_strand>
        <mrna_strand>AACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGTGCTGAG..........................................................................................TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGCGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287656" ref_strand="+" ref_description="SGN-E287656 [cLES-9-E16]">
      <seq>aaaaaccaaaataaccaaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagagatgttggagactaactcatggaggtatgtattgttttatatacgacttaaatcagcttatcttaaacaggacgtgaagaatgccttatccagggtgcctgaaagtcgaaaagagtcttatattaaaactgtcaatgagcttactgataacatggctgagtttgattactacattcgaacaccaaaggtatatgaatctcgtgtattctatgagaagacgttgaaatcaattgatgaattggtgggattacttgcataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40203" stop="41439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40503" g_stop="40947" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41038" g_stop="41139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="547" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E287656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40503" e_stop="40947"/>
          <exon e_start="41038" e_stop="41139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAGGTAACTAACTGTCCTTATTTTCCCTGTTCAGAATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAA</genome_strand>
        <mrna_strand>AAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAG..........................................................................................TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277588" ref_strand="+" ref_description="SGN-E277588 [cLER-6-K24]">
      <seq>caaaactcatcacacacaatgcaagacactacccaaaatccaatctaacttatcaactaatgaacaaaacttctcatgtagacgcaaactcatcgcgacttttctagtcactccattgacactaggcctacaattcacccctttagcattagctgaaaattggggcgttcgatcattcttaagagaacatttctttgagcctggattgtcccctgaagatgcagtagcacgaattcgtcaaacagcagatggactacatagtattaaagagatgttggagactaactcatggaggtatgtattggtttatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40218" stop="41130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40518" g_stop="40830" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E277588" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40518" e_stop="40830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATA</genome_strand>
        <mrna_strand>CAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGGTTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549006" ref_strand="+" ref_description="SGN-E549006 [TUS-66-G24](-)">
      <seq>ggccaaaagagttcatggagtgaacagaggaatctctgtatttgatcttgttttacgtatcgttgcacttgttggaaccttagcaagtgctgtggcaatgggtactgcagatcaagcacttccattcagtacacagattgtaaattttgaagctcagtatgatgatatcgactcgttcaagttcttcgtggtttcgaattctatagtttgtgtatatcttgcactttctatcactatttcaatctttcacattatcagaagtagagcaggaaagagcagagttttgctcattgttctagacgcgataatgctggttttcctcacatctggagcatcagcagcagccgcgattgtgtatttggcacacaatggcaacacttcaactaactggttttcgatatgccaacagtatacagatttctgtcaacgttctgctggatcccttatcggttcttttggtgcaatggccttgatggttatacttataattttgtcatctatcgctttatcaaggcgctgaagatgttggctacactagcaattgctagcctttgtgtgtgtattgtgtttgtaaatgttagtttcatcagttgcatttcattgtatcaagattttcatcagttgtatcacataatgaaaagatttcctccttaaaacccctttttgggaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42494" stop="41058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42194" g_stop="42015" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.358" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41923" g_stop="41800" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="304" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41706" g_stop="41358" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="653" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="679"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E549006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42194" e_stop="42015"/>
          <exon e_start="41923" e_stop="41800"/>
          <exon e_start="41706" e_stop="41358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAAGTAAGCAAAACTGCAAACATATTATTACATGAAATAGAACAGTATAAAGGTTAACTAACACATTTTTTTGTTTTGCTTATTCTGATTGAAGGTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCGGTAATACATTAGATTTCTGCTAAAGTTTTCATATTTAGTACTTTGTTATGATGTTGTACTGATATCTTTTATACTTTGCGAAAACTTTTGAAGATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</genome_strand>
        <mrna_strand>GGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA...........................................................................................GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG.............................................................................................ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544217" ref_strand="+" ref_description="SGN-E544217 [TUS-66-G24]">
      <seq>ttcgcatcacacttgacatacaaatcataacaacaaaatttcattctagtttcaaagtttgagctaaaaggaaaaaatgaaggcagtatcaattgaaactggagagggatcaaaggccaaaagagttcatggagtgaacagaggaatctctgtatttgatcttgttttacgtatcgttgcacttgttggaaccttagcaagtgctgtggcaatgggtactgcagatcaagcacttccattcagtacacagattgtaaattttgaagctcagtatgatgatatcgactcgttcaagttcttcgtggtttcgaattctatagtttgtgtatatcttgcactttctatcactatttcaatctttcacattatcagaagtagagcaggaaagagcagagttttgctcattgttctagacgcgataatgctggttttcctcacatctggagcatcagcagcagccgcgattgtgtatttggcacacaatggcaacacttcaactaactggttttcgatatgccaacagtatacagatttctgtcaacgttctgctggatcccttatcggttcttttggtgcaatggccttgatggttatacttataattttgtcatctatcgctttatcaaggcgctgaagatgttggctacactagcaattgctagcctttgtgtgtgtattgtgtttgtaaatgttagtttcatcagttgcatttcattgtatcaagattttcatcagttgtatcacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42608" stop="41077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42308" g_stop="42015" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.358" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41923" g_stop="41800" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="418" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41706" g_stop="41377" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="748" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E544217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42308" e_stop="42015"/>
          <exon e_start="41923" e_stop="41800"/>
          <exon e_start="41706" e_stop="41377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAAGTAAGCAAAACTGCAAACATATTATTACATGAAATAGAACAGTATAAAGGTTAACTAACACATTTTTTTGTTTTGCTTATTCTGATTGAAGGTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCGGTAATACATTAGATTTCTGCTAAAGTTTTCATATTTAGTACTTTGTTATGATGTTGTACTGATATCTTTTATACTTTGCGAAAACTTTTGAAGATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAA</genome_strand>
        <mrna_strand>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA...........................................................................................GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG.............................................................................................ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306848" ref_strand="+" ref_description="SGN-E306848 [cLEY-11-N17]">
      <seq>tcgcatcacactttacatatcaaatcataacaacaaaatttcattgtagtttcaaagaangagctaaaaggaaaaaatgaaggcagtatcaattgaaactggagagggatcaaaggccaaaagagttcatggagtgaacagaggaatctctgtatttgatcttgttttacgtatcgttgcacttgttggaaccttagcaagtgctgtggcaatgggtactgcagatcaagcacttccattcagtacacagattgtaaattttgaagctcagtatgatgatatcgactcgttcaagttcttcgtggtttcgaattctatagtttgtgtatatcttgcactttctatcactatttcaatctttcacattatcagaagtagagcaggaaagagcagagttttgctcattgttctagacgcgataatgctggttttcctcacatctggagcatcagcagcagccgcgattgtgtatttggcacacaatgggaacacttcaactaactggttttcgatatgccaacagtatacagatttctgtcaacgttctgctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42607" stop="41271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42307" g_stop="42015" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.358" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41923" g_stop="41800" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="418" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41706" g_stop="41571" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="554" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E306848" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42307" e_stop="42015"/>
          <exon e_start="41923" e_stop="41800"/>
          <exon e_start="41706" e_stop="41571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATCACACTTGACATA-CAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAAGTAAGCAAAACTGCAAACATATTATTACATGAAATAGAACAGTATAAAGGTTAACTAACACATTTTTTTGTTTTGCTTATTCTGATTGAAGGTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCGGTAATACATTAGATTTCTGCTAAAGTTTTCATATTTAGTACTTTGTTATGATGTTGTACTGATATCTTTTATACTTTGCGAAAACTTTTGAAGATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGAT</genome_strand>
        <mrna_strand>TCGCATCACACTTTACATATCAAATCATAACAACAAAATTTCATTGTAGTTTCAAAGAANGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA...........................................................................................GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG.............................................................................................ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGGAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606939" ref_strand="+" ref_description="SGN-E606939 [22894]">
      <seq>gtttattttgcttcgtctttctttctgttccatatttctggtaactcatcggtttcatccaccttcacttcagattccagaaacaagcacacaaaatgtcgaacccctcagatgaaagtggcaaggaaccaaaccttggtaatgatcctcctaaagctgaagtaaatgatgaccttcctgcagaagatccaaagggtgcagaagaagaaagccaagatccatctctagcggagcaggaggaactaatgaagaaaaaatatggtggattagtgaaaaagaaacctccattgataactaaggaccatgaacgtgcttttttcgattctgcggactgggcactaggaaagcaagggggacataaggccaaaacacctgctgaggcacttcgcccaaaattggagccgacaccacaccagcaacttcgtactcgtctctcagaagctaaactgacagatgccggtgaagatggtagcaacaatgatcttgaccagctagatgagcagagcggaacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="45251" stop="48804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45551" g_stop="45630" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45631" i_stop="46969" i_length="1339">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46970" g_stop="47119" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="230" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47120" i_stop="47657" i_length="538">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47658" g_stop="47726" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="299" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47727" i_stop="47851" i_length="125">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47852" g_stop="47899" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="347" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47900" i_stop="48003" i_length="104">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48004" g_stop="48057" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="401" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48058" i_stop="48290" i_length="233">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.485" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48291" g_stop="48354" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="465" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48355" i_stop="48451" i_length="97">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.739" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48452" g_stop="48504" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="515" r_length="50" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E606939" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45551" e_stop="45630"/>
          <exon e_start="46970" e_stop="47119"/>
          <exon e_start="47658" e_stop="47726"/>
          <exon e_start="47852" e_stop="47899"/>
          <exon e_start="48004" e_stop="48057"/>
          <exon e_start="48291" e_stop="48354"/>
          <exon e_start="48452" e_stop="48504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTTGCTTCGTCTTTCGTTCTGTTCCATATTTCTGGTAACTCATCGGTTTCATCCACCTTCACTTCAGATTCCAGGTAACCCTTCTTCTTCATCATCATTTTCCCATATCGGAAAACTGATTTTCTTGGATTTTTGGGTTCTATTTTTGTTGTATTTTTTTAAAAGGTGGCGATTTTCAATAGTTATTTCATGTTCTTGTGCTATCAAGTTCGATTCTTTTTTGTGATTTTTTCCTCATTTTTAGGTTTATCATATGTTAATCTACTATTTGCGTTCTGGGTATCAATGGGATTTTAGTATTGATCCAAATTCGGCACTGTTCTGGTGATTGATTTGGTGTTTAAATTGATTTGAATTGCTGAATCTGTGTGTTTATTTGATATTTCGTGAACTGGGAATTGATAGTTCTGTGTTTAACCTTCTTTGTGTTCTTTTGCATGTTTAAGCTGTACTAGAATTGATATCTTGTAATGAAAATGATTGACGAGTTTTCATTTCCAGTCGAATTTCGGGGATTGAGGATCGGGGATGGGGATGGATATAGTGAGCTAAGGGTCTATCAGAAACCTTCTCTTGCTATCTCGATGAGGTAGGGGTAGGGGTGAGGTGTGTTTACACTCTATCTTCTTTAGACCCCACTCGTGAGATTACACTAGTTAACTTCTTATTGTTGTTGTTGTTGTTGTTGGGGAAGGGGATGGGGAAAATTGAACCAGCATACATTTGGAGTGGCTGATTGATTCAGAGGGGTATTGCTGTAATATTTGGTGGAAATTCAATGTTTCAATCAACTGCGGAAGTTTGTTGTTTTTGTATGATATGGCTTATGTATCGAACTAGAAGATGTACATTATAGAGTAATAGGAGTATCTAATGTTTTTCCATCTTTAGATGTGTGATTCTTCATTTTTAGGGATTCTTTGAGGGTATAGTTTATTGTGTGTGTTGACTAAGTGGAGTGAATGTCCGTCAATACTGTGATAAGTGTATGCGGACTGCAATCTGTTTCAGTGATCTATGGATTTTAGAATTCTGTGTTCGAGGTCCTTGATGTTATATGAATGTTTTATGTTATCCAGGGACAGTGAATTGTCATGTCTAACGTTGAATTTTATTCGTAACTAAGATTACATATGCCATAATTCATGATTAGTTGATTGTTTCATTTACTTGTATCCTTAGTCTGTTTACGGTTGTTTTCTGATATGTAGATCAATTGGAACTCTTTGCGATCAGTTTAATTTTAAGATAATACCTTAAATTCAAAATCTAACTGGAAGATGCCCTATATTTTGGATTTTCTTGTTATTGTATCCATTGAAATGTTTTCAAGCGAAGGTTTCTTGGTCAGGAAAATCAGGTGTGTATCTTAACTTAGCTATGAGTGATACCAAACCAGATATATTTTTGCAGAAACAAGCACTCAAAATGTCGAACCCTTCAGATGAAAGTGGCAAGGAACCAAACCTTGGTAATGATCCTCCTAAAGGTGAAGTAAATGATGCCCTTCCTGCAGAAGATCCAAAGGGTGCAGAAGAAGAAAGCCAAGATCCATCTCTAGCGGTACATGTTTTCATATGCATCATTTACTCAAAGCTTTTGCAGTGCTAGTGAATGATGAAGCATATGTTGAAGTGATACAGATTAGGGAATACATTTTTATACTGAAGGTTTTCCTAAAAAATCCCTATATACTCAGTTCTTTTGTTTGCGCTCAAAGTTCTAGAATATTAATCAATGATGGAGCATACATTAAAATGATAGGGATTAGCGAATAAATTTTTGCACCAAAATTTCTTCTAGAAATAGTCCCTATGTACTTCCATTTGCAGCTCAAATCTTTAAAAATGCCAGTCACCATATACTTAGTTTCTTTTTCTGTGCCATATAACCATGTGAATGAGATTTCATTCACAGGACTGGTATCCATTCTATAAGTGTATAAGCCATAAGGGGGTACTTGAGGTAGAGACTGTAAGTTGATGGAAGTGTTATGGAAAATGACCTAAATATACTGCAACTACACGAAACATTTACTGTACTTCTGCCAATTTTTCTTGAGATTTGGGACATAATTCTTTTCCTCCTTGCATATATCCAGGAGCAGGAGGAACTAATGAAGAAAAAATATGGTGGATTAGTGAAAAAGAAACCTCCATTGATAACTAAGGTGATTATTTTCGGTTGTTACTTCAACTCTTTGGCATCTCAAATTATTTTCCTCTATGTGTTTTGAGTTTTACTTCAACTCTTGTACTCGTTGAATTTTCAATCAACCTCTTTAACATTTGCCAGGACCATGAACGTGCTTTTTTCGATTCTGCAGACTGGGCACTAGGAAAGGTACTCAGTTTTAGTGTAACTTTGGCTGTTTCAATCTTTAACTAAAGTTTGATGTTGATGTTTGAGCATCTTTTACCATGTTTTCATTTTCTATCATATTGCAGCAAGGGGGACACAAGGCCAAAACACCTGCTGAGGCACTTCGCCCGAAATTGGAGGTGCATTACCTTATTACTCTGAGAAACACATTTCCAATTTCTATAGTTGCTTGTAATGGCTTACTTTTTTTTTCAACTATTTGTTTTGGAGAAGTTGTATCTTCCTTTTATTTATTCAAACTAAATCCTGAAGCATACATACATAAGGAAGTTAAGTGTGAAGTTGCCACATGTTCAATGTTTATTCGATTATCACAAGAAGAGTGCATCGCTTATGTGTTCTTTGATAACAGCCGACACCACATCAGCAACTTCGTACTCGTCTCTCAGCTTCTAAACTGACAGATACTGGTGAAGGTATGTACCTAAAAGCTATTCCTGTAGTGTGATCATACTGGAAGCAAATCTCAACCCCTTTGTCTCTTTCCTTCTCCATTTAAAATCTGGCAAGCAGATGGTAGCAACAACGATCTTGACCAGCTAGATGATGAGCAGAGCGGAATACCA</genome_strand>
        <mrna_strand>GTTTATTTTGCTTCGTCTTTCTTTCTGTTCCATATTTCTGGTAACTCATCGGTTTCATCCACCTTCACTTCAGATTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGCACACAAAATGTCGAACCCCTCAGATGAAAGTGGCAAGGAACCAAACCTTGGTAATGATCCTCCTAAAGCTGAAGTAAATGATGACCTTCCTGCAGAAGATCCAAAGGGTGCAGAAGAAGAAAGCCAAGATCCATCTCTAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGAGGAACTAATGAAGAAAAAATATGGTGGATTAGTGAAAAAGAAACCTCCATTGATAACTAAG.............................................................................................................................GACCATGAACGTGCTTTTTTCGATTCTGCGGACTGGGCACTAGGAAAG........................................................................................................CAAGGGGGACATAAGGCCAAAACACCTGCTGAGGCACTTCGCCCAAAATTGGAG.........................................................................................................................................................................................................................................CCGACACCACACCAGCAACTTCGTACTCGTCTCTCAGAAGCTAAACTGACAGATGCCGGTGAAG.................................................................................................ATGGTAGCAACAATGATCTTGACCAGCT--A-GATGAGCAGAGCGGAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621346" ref_strand="+" ref_description="SGN-E621346 [75091]">
      <seq>tggtaactcatcggtttcatccaccttcacttcagattccagaaacaagcacacaaaatgtcgaacccctcagatgaaagtggcaaggaaccaaaccttggtaatgatcctcctaaagctgaagtaaatgatgaccttcctgcagaagatccaaagggtgcagaagaagaaagccaagatccatctctagcggagcaggaggaactaatgaagaaaaaatatggtggattagtgaaaaagaaacctccattgataactaaggaccatgaacgtgcttttttcgattctgcggactgggcactaggaaagcaagggggccaaaaggccaaaacacctgctgaggcacttcgcccaaaattggagccgacaccacaccagcaacttcgcactcgtctctcagcttctgaactgacagatgccggtgaagatggtagcaacaacgatcttgaccagctagatgagcagagcggaacaccagcagcggatggtgagaataagtcttagatcagagggaccaggaccaaaacattcttgagcagcctcatcaaagtttcctgctgaattaactgaaagtggtgttgtaaatcagtctagctacttatatagaggtaaaaagaaggaaagaaagagaataattgctcgtgtggcgaatttttgtactgagattagatttgttgtcctatacttgactgatttcctttgcataaaattcagaaaactgccctatctggctgtgctataagtaccatcatatgatacatttgtactttttggcggtggtaaaagtctagattgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="45289" stop="49061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45589" g_stop="45630" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45631" i_stop="46969" i_length="1339">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46970" g_stop="47119" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="192" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47120" i_stop="47657" i_length="538">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47658" g_stop="47726" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="261" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47727" i_stop="47851" i_length="125">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47852" g_stop="47899" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="309" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47900" i_stop="48003" i_length="104">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48004" g_stop="48057" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="363" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48058" i_stop="48290" i_length="233">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.485" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48291" g_stop="48354" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="427" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48355" i_stop="48451" i_length="97">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.739" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48452" g_stop="48755" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="738" r_length="311" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E621346" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45589" e_stop="45630"/>
          <exon e_start="46970" e_stop="47119"/>
          <exon e_start="47658" e_stop="47726"/>
          <exon e_start="47852" e_stop="47899"/>
          <exon e_start="48004" e_stop="48057"/>
          <exon e_start="48291" e_stop="48354"/>
          <exon e_start="48452" e_stop="48755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAACTCATCGGTTTCATCCACCTTCACTTCAGATTCCAGGTAACCCTTCTTCTTCATCATCATTTTCCCATATCGGAAAACTGATTTTCTTGGATTTTTGGGTTCTATTTTTGTTGTATTTTTTTAAAAGGTGGCGATTTTCAATAGTTATTTCATGTTCTTGTGCTATCAAGTTCGATTCTTTTTTGTGATTTTTTCCTCATTTTTAGGTTTATCATATGTTAATCTACTATTTGCGTTCTGGGTATCAATGGGATTTTAGTATTGATCCAAATTCGGCACTGTTCTGGTGATTGATTTGGTGTTTAAATTGATTTGAATTGCTGAATCTGTGTGTTTATTTGATATTTCGTGAACTGGGAATTGATAGTTCTGTGTTTAACCTTCTTTGTGTTCTTTTGCATGTTTAAGCTGTACTAGAATTGATATCTTGTAATGAAAATGATTGACGAGTTTTCATTTCCAGTCGAATTTCGGGGATTGAGGATCGGGGATGGGGATGGATATAGTGAGCTAAGGGTCTATCAGAAACCTTCTCTTGCTATCTCGATGAGGTAGGGGTAGGGGTGAGGTGTGTTTACACTCTATCTTCTTTAGACCCCACTCGTGAGATTACACTAGTTAACTTCTTATTGTTGTTGTTGTTGTTGTTGGGGAAGGGGATGGGGAAAATTGAACCAGCATACATTTGGAGTGGCTGATTGATTCAGAGGGGTATTGCTGTAATATTTGGTGGAAATTCAATGTTTCAATCAACTGCGGAAGTTTGTTGTTTTTGTATGATATGGCTTATGTATCGAACTAGAAGATGTACATTATAGAGTAATAGGAGTATCTAATGTTTTTCCATCTTTAGATGTGTGATTCTTCATTTTTAGGGATTCTTTGAGGGTATAGTTTATTGTGTGTGTTGACTAAGTGGAGTGAATGTCCGTCAATACTGTGATAAGTGTATGCGGACTGCAATCTGTTTCAGTGATCTATGGATTTTAGAATTCTGTGTTCGAGGTCCTTGATGTTATATGAATGTTTTATGTTATCCAGGGACAGTGAATTGTCATGTCTAACGTTGAATTTTATTCGTAACTAAGATTACATATGCCATAATTCATGATTAGTTGATTGTTTCATTTACTTGTATCCTTAGTCTGTTTACGGTTGTTTTCTGATATGTAGATCAATTGGAACTCTTTGCGATCAGTTTAATTTTAAGATAATACCTTAAATTCAAAATCTAACTGGAAGATGCCCTATATTTTGGATTTTCTTGTTATTGTATCCATTGAAATGTTTTCAAGCGAAGGTTTCTTGGTCAGGAAAATCAGGTGTGTATCTTAACTTAGCTATGAGTGATACCAAACCAGATATATTTTTGCAGAAACAAGCACTCAAAATGTCGAACCCTTCAGATGAAAGTGGCAAGGAACCAAACCTTGGTAATGATCCTCCTAAAGGTGAAGTAAATGATGCCCTTCCTGCAGAAGATCCAAAGGGTGCAGAAGAAGAAAGCCAAGATCCATCTCTAGCGGTACATGTTTTCATATGCATCATTTACTCAAAGCTTTTGCAGTGCTAGTGAATGATGAAGCATATGTTGAAGTGATACAGATTAGGGAATACATTTTTATACTGAAGGTTTTCCTAAAAAATCCCTATATACTCAGTTCTTTTGTTTGCGCTCAAAGTTCTAGAATATTAATCAATGATGGAGCATACATTAAAATGATAGGGATTAGCGAATAAATTTTTGCACCAAAATTTCTTCTAGAAATAGTCCCTATGTACTTCCATTTGCAGCTCAAATCTTTAAAAATGCCAGTCACCATATACTTAGTTTCTTTTTCTGTGCCATATAACCATGTGAATGAGATTTCATTCACAGGACTGGTATCCATTCTATAAGTGTATAAGCCATAAGGGGGTACTTGAGGTAGAGACTGTAAGTTGATGGAAGTGTTATGGAAAATGACCTAAATATACTGCAACTACACGAAACATTTACTGTACTTCTGCCAATTTTTCTTGAGATTTGGGACATAATTCTTTTCCTCCTTGCATATATCCAGGAGCAGGAGGAACTAATGAAGAAAAAATATGGTGGATTAGTGAAAAAGAAACCTCCATTGATAACTAAGGTGATTATTTTCGGTTGTTACTTCAACTCTTTGGCATCTCAAATTATTTTCCTCTATGTGTTTTGAGTTTTACTTCAACTCTTGTACTCGTTGAATTTTCAATCAACCTCTTTAACATTTGCCAGGACCATGAACGTGCTTTTTTCGATTCTGCAGACTGGGCACTAGGAAAGGTACTCAGTTTTAGTGTAACTTTGGCTGTTTCAATCTTTAACTAAAGTTTGATGTTGATGTTTGAGCATCTTTTACCATGTTTTCATTTTCTATCATATTGCAGCAAGGGGGACACAAGGCCAAAACACCTGCTGAGGCACTTCGCCCGAAATTGGAGGTGCATTACCTTATTACTCTGAGAAACACATTTCCAATTTCTATAGTTGCTTGTAATGGCTTACTTTTTTTTTCAACTATTTGTTTTGGAGAAGTTGTATCTTCCTTTTATTTATTCAAACTAAATCCTGAAGCATACATACATAAGGAAGTTAAGTGTGAAGTTGCCACATGTTCAATGTTTATTCGATTATCACAAGAAGAGTGCATCGCTTATGTGTTCTTTGATAACAGCCGACACCACATCAGCAACTTCGTACTCGTCTCTCAGCTTCTAAACTGACAGATACTGGTGAAGGTATGTACCTAAAAGCTATTCCTGTAGTGTGATCATACTGGAAGCAAATCTCAACCCCTTTGTCTCTTTCCTTCTCCATTTAAAATCTGGCAAGCAGATGGTAGCAACAACGATCTTGACCAGCTAGATGATGAGCAGAGCGGAATACCAGCAGCGGATGGTGAGAATAAGTCTTAGATCAGAGGCAGCTGGACCAAAACATTCTTGAGCATCCTCATCAAAGTTCCCTGCTGAATTGAACTGAAAGTGGTGTTGTAAATCAGGCTAGCTACTTATATAGAGGT----A-AA--AAAG--A-AGAATAATTGCTCATGTGGCGAATTTTTGTACTGAGATTAGATTTGTTGTCCTATACTGAGCTGATTTCC-TTGCATAAAATTCAGAAAACTTCCTTGTCTGGCTGTGCT</genome_strand>
        <mrna_strand>TGGTAACTCATCGGTTTCATCCACCTTCACTTCAGATTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGCACACAAAATGTCGAACCCCTCAGATGAAAGTGGCAAGGAACCAAACCTTGGTAATGATCCTCCTAAAGCTGAAGTAAATGATGACCTTCCTGCAGAAGATCCAAAGGGTGCAGAAGAAGAAAGCCAAGATCCATCTCTAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGAGGAACTAATGAAGAAAAAATATGGTGGATTAGTGAAAAAGAAACCTCCATTGATAACTAAG.............................................................................................................................GACCATGAACGTGCTTTTTTCGATTCTGCGGACTGGGCACTAGGAAAG........................................................................................................CAAGGGGGCCAAAAGGCCAAAACACCTGCTGAGGCACTTCGCCCAAAATTGGAG.........................................................................................................................................................................................................................................CCGACACCACACCAGCAACTTCGCACTCGTCTCTCAGCTTCTGAACTGACAGATGCCGGTGAAG.................................................................................................ATGGTAGCAACAACGATCTTGACCAGCT--A-GATGAGCAGAGCGGAACACCAGCAGCGGATGGTGAGAATAAGTCTTAGATCAGAGGGACCAGGACCAAAACATTCTTGAGCAGCCTCATCAAAGTTTCCTGCTGAATT-AACTGAAAGTGGTGTTGTAAATCAGTCTAGCTACTTATATAGAGGTAAAAAGAAGGAAAGAAAGAGAATAATTGCTCGTGTGGCGAATTTTTGTACTGAGATTAGATTTGTTGTCCTATACTTGACTGATTTCCTTTGCATAAAATTCAGAAAACTGCCCTATCTGGCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257542" ref_strand="+" ref_description="SGN-E257542 [cLEG-45-A12](-)">
      <seq>attgccaattgctttttgcccttgggagcgcttcatgaagggggggttccatgtctacatatgtgttatttcattatttgagaagggattctctttgctctgtgctgtttgataagagttctgcactgtactttaaaagctgttcgtttgtggacggctgagcatagttactttttactgtggcctttgaatggtccattcaaagggtggatgcaatagagttcattgaagcgacttattcctggaaataagaaggcgttaaaatattgtcatttctatttggtcccaacaggattcatatgtaaatatactggttttgttgagttcatgttaagaatatttcatttttaatatatatggttttgttttgtggaattcataattagaatatttcatttttaatatatatggttttgttgagttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="49906" stop="48882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49606" g_stop="49183" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="449"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E257542" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49606" e_stop="49183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</genome_strand>
        <mrna_strand>ATTGCCAATTGCTTTTTGCCCTTGGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAAGGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTAAAAGCTGTTCGTTTGTGGACGGCTGAGCATAGTTACTTTTTACTGTGGCCTTTGAATGGTCCATTCAAAGGGTGGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317811" ref_strand="-" ref_description="SGN-E317811 [cTOA-30-B5]">
      <seq>ataatttcagagctttgctatatgtggaaatgatggtgttggtcactgcttgatgtctgatcattttatgtgatcgattctgcaggattgatagaaaatttagttcttatgataaattccaaaggtaagtacttctctttcttgcaaatgttatttcttaccccgtgagaggatacattattttggtaggaacatatacatcctactgtcaaaacatttcaggaggaaagaaagctctataacgtgcattgccaattgctttttgccctttggagcgcttcatgaagggggggttccatgtctacatatgtgttatttcattatttgagaatggattctctttgctctgtgctgtttgataagagttctgcactgtactttgaaagctggtcgtttgtggacggctgagcatagttactctttactgtggcctttgaatggtccattcaaagcgtcgatgcaatagagttcattgaagcgacttattcctggaaataagaaggcgttaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50230" stop="49041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49930" g_stop="49905" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49904" i_stop="49828" i_length="77">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.255" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49827" g_stop="49341" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="513" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E317811" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317811" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49930" e_stop="49905"/>
          <exon e_start="49827" e_stop="49341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACACCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATA</genome_strand>
        <mrna_strand>ATAATTTCAGAGCTTTGCTATATGTG.............................................................................GAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACCCCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263376" ref_strand="+" ref_description="SGN-E263376 [cLEG-62-N3]">
      <seq>aggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttctgcatttcaggaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgattcctgctattgggttctatcctcgtgaacgaaaccccttctgttagttgctagcacagagcttttaagagatcaatcaatagctaattatgatcaaaattcacattcacgtttgcatgctatggtatacactaagaaggcagatttctacttgagcagcggttaattttcttctcttgcttctctagaggaagacgtacttgggattgagaattgcttttcccatagttgagtaggcaccaatataatttcagaactttgctatatgtggtaaacctgtggcttatcttgttaatattcatgctcccttggcctcaaagaaatgacggcgttcctttggcctttaagaaatgatggtgttggtcactgcttgatgtctgatcattttatgtgatcgattctgcacgattgatagaaaatttagttcttatgataaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50643" stop="49436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="49736" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E263376" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="49736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATT</genome_strand>
        <mrna_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGCGGTTAATTTTCTTCTCTTGCTTCTCTAGAGGAAGACGTACTTGGGATTGAGAATTGCTTTTCCCATAGTTGAGTAGGCACCAATATAATTTCAGAACTTTGCTATATGTGGTAAACCTGTGGCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAAGAAATGACGGCGTTCCTTTGGCCTTTAAGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCACGATTGATAGAAAATTTAGTTCTTATGATAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256287" ref_strand="+" ref_description="SGN-E256287 [cLEG-37-L12]">
      <seq>aggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttctgcatttcaagaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgattcctgctattgggttctatcctcgtgaacgaaaccccttctgttagttgctagcacagagcttttaagagatcaatcaatagctaattatgatcaaaattcacattcacgtttgcatgctatggtatacactaagaaggcagatttctacttgagcagtgtttaattttcttctcttgcttctctagtgtaggacgtacttgggattgagaattgcttttccgatagttgagtaggcacgaatataatttcagagctttgctatatgtggtaaacctgtgtcttatcttgttaatattcatgctcccttggcctcaaagaaatgacggcgttcctttggcctttaagaaatgatggtgttggtcactgcttgatgtctgatcattttatgtgatcgattctgcaggattgatagaaaatttagttcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50643" stop="49442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="49742" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E256287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="49742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGA</genome_strand>
        <mrna_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAAGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAAGAAATGACGGCGTTCCTTTGGCCTTTAAGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258364" ref_strand="+" ref_description="SGN-E258364 [cLEG-49-N22]">
      <seq>aggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttcagcatttcaggaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgattcctgctattgggttctatcctcgtgaacgaaaccccttctgttagttgctagcacagagcttttaagagatcaatcaatagctaattatgatcaaaattcacattcacgtttgcatgctatggtatacactaagaaggcagatttctacttgagcagtgtttaattttcttctcttgcttctctagtgtaggacgtacttgggattgagaattgcttttccgatagttgagtaagcacgaatataatttcagagctttgctatatgtggtaaacctgtggcttatcttggtaatattcatgctcccttggcctcaaggaaatgaccgcgttcctttggcctttaagaaatgatggtgttggtcactgcttgatggctgatcattttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50643" stop="49485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="49785" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E258364" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="49785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTAT</genome_strand>
        <mrna_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCAGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAAGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGGCTTATCTTGGTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACCGCGTTCCTTTGGCCTTTAAGAAATGATGGTGTTGGTCACTGCTTGATGGCTGATCATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264010" ref_strand="+" ref_description="SGN-E264010 [cLEG-64-D8]">
      <seq>aggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttctgcatttcaggaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgattcctgctattgggttctatcctcgtgaacgaaaccccttctgttagttgctagcacagagcttttaagagatcaatcaatagctaattatgatcaaaattcacattcacgtttgcatgctatggtatacactaagaaggcagatttctacttgagcagtgtttaattttcttctcttgcttctctagtgtaagacgtacttgggattgagaattgcttttccgatagttgagtaggcacgaatataatttcagagctttgctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50643" stop="49607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="49907" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E264010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="49907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATG</genome_strand>
        <mrna_strand>AGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAAGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423431" ref_strand="+" ref_description="SGN-E423431 [STM-42-C21]">
      <seq>ggaaaatcttatggatactagggtgtagagggttattagcagccggaggtacagaatttcactttttttttggtcttatacataaattaatgggcatctctgttctgtacttcagtatagcctcaagcgcatcttccttttgataactttgactagcctgaagcctgtattgcatctctaatgctctttcttttactttgccttttcacacttgccatctaaacagctatcatctccgatgcctgttccagcccattgcccgccccttttgacgaagcctccagcctaagaacagaggaccagacgaacaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagcatatatattgtaatgaaacaacgcctcttagtcattgaaggccttttgtacccaaaatacctctgctttagtggttttgtgtagcagactaagccatgacagtttgatgtggtggttctttactttttgtttgtttgtttgtgttcttaagaacttttgtgacgtttcctgttgaccagttatgctacaggattgaaccttctattgctttctcttgcatcgattttttttcatgttttcttgacagctttccagttattgaacaaaagttcaagaaagtcaggtttctgcatttcaggaggtaaaaatgtcatgtttacttgacagcttttcagttagtgatcttgtatatgacatgattcccgctattgggttctatccttgtcaatgaagcccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="51216" stop="49833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50916" g_stop="50133" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E423431" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50916" e_stop="50133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCAC-CTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAAC-TCTGTTGCTTTCTCTTGCATCGA-TTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCT</genome_strand>
        <mrna_strand>GGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACTTTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCGCATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGCCCATTGCCCGCCCCTTTTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAACAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGCATATATATTGTAATGAAACAACGCCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTCTGCTTTAGTGGTTTTGTGTAGCAGACTAAGCCATGACAGTTTGATGTGGTGG---TTCTTTACTTTTTGTTTGTTTGTTTGTGTTCTTAAGAACTTTTGTGAC---GT--T-T--C-----CTGTTGACCAGTTATGCTACAGGATTGAACCTTCTATTGCTTTCTCTTGCATCGATTTTTTTTCATGTTTTCTTGACAGCTTTCCAGTTATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTACTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCCGCTATTGGGTTCTATCCTTGTCAATG-AAGCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315081" ref_strand="+" ref_description="SGN-E315081 [cTOB-4-O14]">
      <seq>agaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaatgaaacaacacctcttagtcattgaaggccttttgtacccaaaatacctttgctttagcagtattgtgtagcagactaagtcatgacagtttgatatggtggttcttctttactttgtgtttgtttgtttgtgttcttaagtacctttgtgacgtagtggtgtcacttttactgttgaccagttatgctacaggattgaaactctgttgctttctcttgcatcgatttttttcatgttttctcgacagctttccagtaattgaacaaaagttcaagaaagtcaggtttctgcatttcaggaggtaaaaatgtcatgttttcttgacagcttttcagttagtgatcttgtatatgacatgagtcctgctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50901" stop="49862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50601" g_stop="50162" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E315081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50601" e_stop="50162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGG</genome_strand>
        <mrna_strand>AGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGAGTCCTGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450444" ref_strand="+" ref_description="SGN-E450444 [cSTS-9-I20]">
      <seq>ggaaaatcttatggatactagggtgtagagggttattagcagccggaggtacagaatttcactttttttttggtcttatacataaattaatgggcatctctgttctgtacttcagtatagcctcaagcgcatcttccttttgataactttgactagcctgaagcctgtattgcatctctaatgctctttcttttactttgccttttcacacttgccatctaaacagctatcatctccgatgcctgttccagcccattgcccgccccttttgacgaagcctccagcctaagaacagaggaccagacgaacaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagcatatatattgtaatgaaacaacgcctcttagtcattgaaggccttttgtacccaaaatacctctgctttagtggttttgtgtagcagactaagccatgacagtttgatgtggtggttctttactttttgtttgtttgtttgtgttcttaagaacttttgtgacgtttcctgttgaccagttatgctacaggattgaaccttctattgctttctcttgcatcgattttttttcatgttttcttgacagctttccagttattgaacaaaagttcaagaaagtcaggtttctgcatttcaagaggtaaaaatgtcatgtttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="51216" stop="49911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50916" g_stop="50211" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E450444" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50916" e_stop="50211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCAC-CTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAAC-TCTGTTGCTTTCTCTTGCATCGA-TTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTG</genome_strand>
        <mrna_strand>GGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACTTTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCGCATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGCCCATTGCCCGCCCCTTTTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAACAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGCATATATATTGTAATGAAACAACGCCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTCTGCTTTAGTGGTTTTGTGTAGCAGACTAAGCCATGACAGTTTGATGTGGTGG---TTCTTTACTTTTTGTTTGTTTGTTTGTGTTCTTAAGAACTTTTGTGAC---GT--T-T--C-----CTGTTGACCAGTTATGCTACAGGATTGAACCTTCTATTGCTTTCTCTTGCATCGATTTTTTTTCATGTTTTCTTGACAGCTTTCCAGTTATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAAGAGGTAAAAATGTCATGTTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746194" ref_strand="+" ref_description="SGN-E746194 [GI|47104860]">
      <seq>gaggtacaacacttctagtaagaccatccatggtcaaaaaaactttttacagccaaaccctagaagcttccctcatttggcaaatttctttatattttcagcagtatttagtactttgaacacaacagacccacggatttctgctttcacagaacacttgatacaggtttgctagacaaacaaaagggtggcacattcagctccttgacatggcaggccagaggaataactacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttgctgccaatgcgttattgcaagtacttatgcggttgagggccaatgcatttgagatggagggatcttttcctgcattttctcctggcctttcttatgcccccatgcctgcaagcgtgccagatggctcaagatatggtaaccgtgataatcgatcacgtcggcatggttattcatcttattcaggtggacatgattacagtgatttgtctccaagggatagttatggtggctcacaggttggtaatggaggcaattatgcaccatatggcgtttattcctctgggcgacctagtagttcaggggtttccagccataatccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagaccattgcccgaccctattgacgaagcctccagcctaagaacagaggaccagacgagcaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaatgaaacaacacctcttagtcattgaaggccttttgtacccaaaatacctttgctttagcagtattgtgtagcagactaagtcatgacagtttgatatggtggttcttctttactttgtgtttgtttgtttgtgttcttaagtacctttgtgacgtagtggtgtcacttttactgttgaccagttatgctacaggattgaaactctccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="56142" stop="50030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55843" g_stop="55687" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="186" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53609" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="785" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="1181" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1182" r_stop="1436" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51573" g_stop="51316" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1437" r_stop="1694" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1695" r_stop="1759" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1760" r_stop="1835" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50691" g_stop="50330" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1836" r_stop="2197" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2200" polyA_stop="2214"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E746194" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2196</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55843" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTACAACACTTCTAGTAAGACCATCCATGGTC-AAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCT</genome_strand>
        <mrna_strand>GAGGTACAACACTTCTAGTAAGACCATCCATGGTCAAAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACT................................................................................................................TGATACAGGTTTGCTAGACAAACAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG.....................................................................................................................GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590765" ref_strand="+" ref_description="SGN-E590765 [44367]">
      <seq>gcgttattgcaagtacttatgcgtttgagggccaatacatttgagatggagggatcttttcctgcattttctcctggcctttcttatgtccccatgtctgcaagcatgccagatggctcaagatatggtaaccgtgataatagatcacgtcggcatggttattcatcttattcaggtggacatgattacaatgatttgtctccaagtgataattatggtggctcacaggttggtggtggaggtaattatgcaccatatggcgtttattcctctgggcgacctagcagtgcaggggtttccagccataacccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagcccattgcccgccccttttgacgaagcctccagcctaagaacagaggaccagacgaacaagatagagaaacttgtggccatccttgccttagtatttctgtttcttaggtgttaccagcatatatattgtaatgaaacaacgcctcttagtcattgaaggccttttgtacccaaaatacctctgctttagtggttttgtgtagcagactaagccatgacagtttgatgtggtggttctttactttttgtctgtttgtgttcttaagaacttttgtgacgtttcctgttgaccagttatgctacaggattgaaccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="51843" stop="50032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51543" g_stop="51316" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="293" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="369" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50691" g_stop="50382" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="672" r_length="303" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="721"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E590765" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51543" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGAC</genome_strand>
        <mrna_strand>GCGTTATTGCAAGTACTTATGCGTTTGAGGGCCAATACATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGTCCCCATGTCTGCAAGCATGCCAGATGGCTCAAGATATGGTAACCGTGATAATAGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAATGATTTGTCTCCAAGTGATAATTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTGGTGGAGGTAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGCAGTGCAGG.....................................................................................................................GGTTTCCAGCCATAACCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGCCCATTGCCCGCCCCTTTTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAACAAGATAGAGAAACTTGTGGCCATCCTTGCCTTAGTATTTCTGTTTCTTAGGTGTTACCAGCATATATATTGTAATGAAACAACGCCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTCTGCTTTAGTGGTTTTGTGTAGCAGACTAAGCCATGACAGTTTGATGTGGTGG---TTCTTTAC--T-T-TTTGTCTGTTTGTGTTCTTAAGAACTTTTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552465" ref_strand="+" ref_description="SGN-E552465 [cTSB-4-A11]">
      <seq>gatggctcacgatatggtaaccgtgataatcgatcacgtcggcatggttattcatcttattcaggtggacatgattacagtgatttgtctccgagggatagttatggtggctcacaggttggtaatggaggcaattatgcaccatatggcgtttattcctctgggcgacctagtagttcaggggtttccagccataatccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagaccattgcccgaccctattgacgaagcctccagcctaagaacagaggaccagacgagcaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaatgaaacaacacctcttagtcattgaaggccttttgtacccaaaatacctttgctttagcagtattgtgtagcagactaagtcatgacagtttgatatggtggttcttctttaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="51732" stop="50123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51432" g_stop="51316" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="182" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="258" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50691" g_stop="50423" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="527" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="538"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E552465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51432" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTA</genome_strand>
        <mrna_strand>GATGGCTCACGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCGAGGGATAGTTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG.....................................................................................................................GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556977" ref_strand="+" ref_description="SGN-E556977 [cTSD-2-A11]">
      <seq>gatggctcaagatatggtaaccgtgataatcgatcacgtcggcatggttattcatcttattcaggtggacatgattacagtgatttgtctccaagggatagttatggtggctcacaggttggtaatggaggcaattatgcaccatatggcgtttattcctctgggcgacctagtagttcaggggtttccagccataatccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagaccattgcccgaccctattgacgaagcctccagcctaagaacagaggaccagacgagcaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaatgaaacaacacctcttagtcattgaaggccttttgtacccaaaatacctttgctttagcagtattgtgtagcagactaagtcatgacagtttgatatggtggttcttctttaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="51732" stop="50123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51432" g_stop="51316" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="182" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="258" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50691" g_stop="50423" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="527" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="538"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E556977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51432" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTA</genome_strand>
        <mrna_strand>GATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG.....................................................................................................................GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714058" ref_strand="+" ref_description="SGN-E714058 [FB10BF04]">
      <seq>caaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttctgccaatgcgttattgcaagtacttatgcggttgagggccaatgcatttgagatggagggatcttttcctgcattttctcctggcctttcttatgcccccatgcctgcaagcgtgccagatggctcaagatatggtaaccgtgataatcgatcacgtcggcatggttattcatcttattcaggtggacatgattacagtgatttgtctccaagggatagttatggtggctcacaggttggtaatggaggcaattatgcaccatatggcgtttattcctctgggcgacctagtagttcaggggtttccagccataatccttctgcctatggaaaatcttatggatactagggtgtagagggttattagcagccggagctatcatctccgatgcctgttccagaccattgcccgaccctattgacgaagcctccagcctaagaacagaggaccagacgagcaagatagagaaacttgtggccatccttgccctagtatttctgtttcttaggtgttaccagaatatatattgtaaatgaacaacacctcttagtcattgaagggccttttgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52284" stop="50196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52085" g_stop="52078" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="263" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51573" g_stop="51316" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="520" r_length="257" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51126" g_stop="51062" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="585" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50944" g_stop="50869" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="661" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50691" g_stop="50496" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="858" r_length="197" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E714058" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52085" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51316"/>
          <exon e_start="51126" e_stop="51062"/>
          <exon e_start="50944" e_stop="50869"/>
          <exon e_start="50691" e_stop="50496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAGGTAAATACTCAGTGTTCATCTCTTAGAAGTTAGTTTTATGTTATCTCATTTTTACAGGTAAAATCAAATCATCTTGTCCTGTTGTTCATATTCTAATTGATGGTTTCTGTATTTTTCCATCTATTTTGCTGCTATCCTTGTATAGCAAACAAAATATGTCAGCAAGTAGACTGAATTCATATTTTTCAGGTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGGGTAAAACATTATCTGACTACACACTTTGAATTAAGGCTATGTTTCCCGCCTATAGTTACAGTCTCTTTCATTTACTGTAAAAAAGGTTTTGTTATTTACTTGTTCTAATCTTTCCAGGGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAA-GGCCTTTTGTACC</genome_strand>
        <mrna_strand>CAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTT-CTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG.............................................................................................................................................................................................GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG.....................................................................................................................GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG.................................................................................................................................................................................CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAAATGAACAACACCTCTTAGTCATTGAAGGGCCTTTTGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317073" ref_strand="+" ref_description="SGN-E317073 [cTOA-27-O10]">
      <seq>atcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttgctgccaatgcgttattgcaagtacttatgcgggtgaaggccaatgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52640" stop="51201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52340" g_stop="52078" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="518" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51573" g_stop="51501" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="591" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E317073" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52340" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTG</genome_strand>
        <mrna_strand>ATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGGTGAAGGCCAATGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258560" ref_strand="+" ref_description="SGN-E258560 [cLEG-47-L15]">
      <seq>gaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatacaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatgttgctgccaatgcgttattgcaagtacttatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52764" stop="51221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52464" g_stop="52078" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="642" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51573" g_stop="51521" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="695" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E258560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52464" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCG</genome_strand>
        <mrna_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATACAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255758" ref_strand="+" ref_description="SGN-E255758 [cLEG-36-H22]">
      <seq>ctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagattactggagatgctaatgttgctgccaatgcgttattgcaagtacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54015" stop="51223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53715" g_stop="53609" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="503" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51574" i_length="504">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51573" g_stop="51523" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="554" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E255758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53715" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51573" e_stop="51523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATG</genome_strand>
        <mrna_strand>CTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703901" ref_strand="+" ref_description="SGN-E703901 [FA22DB07]">
      <seq>cgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaagggcaagcatccgcgttctttcgaaggaaaatcatccaaaagtggcatccgtagatgacgagatggtgcagattactggagatgctaatggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54092" stop="51250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53792" g_stop="53609" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="580" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51980" g_stop="51726" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="835" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51573" g_stop="51550" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="859" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E703901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53792" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51726"/>
          <exon e_start="51573" e_stop="51550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAGGTAAACAGGTTTCTATTTTTGTCCTCGTGTAATATTGTATCAGTTGGTTTGTTTAATGCTCATTTCTTGTAGGTTGCGGGTGTGATGTTTGGTTTTAGTGTACTCCCTATGCTGAAATTCTTATGTCATGGTATTGTGTTTTTCTCCTTCAGATTACTGGAGATGCTAATGTTGCT</genome_strand>
        <mrna_strand>CGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG........................................................................................................................................................ATTACTGGAGATGCTAATGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261968" ref_strand="+" ref_description="SGN-E261968 [cLEG-58-I8]">
      <seq>gaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggtaaaggtggttccattatcactgagatgcggaattccacaaaggcaagcatccgcgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52764" stop="51477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52464" g_stop="52078" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51777" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="591" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E261968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52464" e_stop="52078"/>
          <exon e_start="51980" e_stop="51777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTT</genome_strand>
        <mrna_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAAGGCAAGCATCCGCGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429845" ref_strand="+" ref_description="SGN-E429845 [STM-52-B6]">
      <seq>ccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaaggtgcagttgttaagaaagcactttatcaagtagcagcacgcctccatgataatccatcacggtcccaacatcaattgctgtcgtcacccagcatatttaggtctggtgctggacttgttaatcctcatgctggtacacaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcttcttctgtaaaagagtttgcagttcgtttggtttgtccaactgagaatgtaggagctgtaattggcaaaggtggaggcattatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcagctgagggagatgattgcattatatttgtatcagcaaaggaggcatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccgagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattgggtaaggtggttccattatcaatgagatgcggaattccacaagggcaagcatccgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54002" stop="51481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53702" g_stop="53609" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="490" r_length="396" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51980" g_stop="51781" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="690" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E429845" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53702" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGT</genome_strand>
        <mrna_strand>CCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGGTGCAGTTGTTAAGAAAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCACGGTCCCAACATCAATTGCTGTCGTCACCCAGCATATTTAGGTCTGGTGCTGGACTTGTTAATCCTCATGCTGGTACACAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCTTCTTCTGTAAAAGAGTTTGCAGTTCGTTTGGTTTGTCCAACTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGCATTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCAGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................GCATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCGAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGGTAAGGTGGTTCCATTATCAATGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257541" ref_strand="+" ref_description="SGN-E257541 [cLEG-45-A12]">
      <seq>gaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaagaagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgtacctagttcacgagttggatgccttattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52764" stop="51537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52464" g_stop="52078" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51837" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="531" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E257541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52464" e_stop="52078"/>
          <exon e_start="51980" e_stop="51837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGT</genome_strand>
        <mrna_strand>GAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251284" ref_strand="+" ref_description="SGN-E251284 [cLEG-10-P15]">
      <seq>tcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttttccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgttattggcaaaggtggaggagttatcatacagctaagacaggaatcaagtgcatctattaaagtcgatagtgctgcggctgaaggagatgattgcattatatgtgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcgtttgcaaccaataagtagtgagaaaactgaaaaagaatccggtgatgctattcttacgactcgcctgcttgttcctagttcacgagttggatgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53969" stop="51541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53669" g_stop="53609" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="457" r_length="396" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51980" g_stop="51841" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="597" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E251284" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53669" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTAT</genome_strand>
        <mrna_strand>TCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTTATTGGCAAAGGTGGAGGAGTTATCATACAGCTAAGACAGGAATCAAGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAAGGAGATGATTGCATTATATGTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAATAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTTCCTAGTTCACGAGTTGGATGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367304" ref_strand="+" ref_description="SGN-E367304 [cLPT-5-J2]">
      <seq>tgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcttcttctgtaaaggagtttgcagttcgtttggtttgtccaactgagaatgtaggagctgtaattggcaaaggtggaggcattatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcggctgagggagatgattgcattatatttgtatcagcaaaggagacatttgaagatcaatcccctaccatcgatgcaacaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="53938" stop="51640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53638" g_stop="53609" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52078" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="426" r_length="396" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51980" g_stop="51940" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="467" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E367304" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53638" e_stop="53609"/>
          <exon e_start="52473" e_stop="52078"/>
          <exon e_start="51980" e_stop="51940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCG</genome_strand>
        <mrna_strand>TGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCTTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAACTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGCATTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG.................................................................................................ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584891" ref_strand="+" ref_description="SGN-E584891 [10812]">
      <seq>attgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcttcttctgtaaaagagtttgcagttcgtcttggtttgtccaactgagaatgtaggagctgtaattggcaaacggtggaggccattatcaaacagctaagacaggaatcaggtgcatctattaaagtcgatagtgctgcagctgagggagatgattgcattatatttgtatccagccaaaggaggcatttgaaggatcaatgccccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52603" stop="51777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52303" g_stop="52078" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51980" g_stop="51959" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="255" r_length="24" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E584891" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52303" e_stop="52078"/>
          <exon e_start="51980" e_stop="51959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGT-TTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAA-GGTGGAGG-AGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTAT-CAG-CAAAGGAGGTGAGGAACACTTCTTGGTTATTGAATTCATTATTTGATTGCTAGGACTGAGAATGCTTATCTGTAGCGTTTGTTGCTTATCCAATTGTGATCGCAGACATTTGAA-GATCAAT-CCCCTA</genome_strand>
        <mrna_strand>ATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCTTCTTCTGTAAAAGAGTTTGCAGTTCGTCTTGGTTTGTCCAACTGAGAATGTAGGAGCTGTAATTGGCAAACGGTGGAGGCCATTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCAGCTGAGGGAGATGATTGCATTATATTTGTATCCAGCCAAAGGAG.................................................................................................GCATTTGAAGGATCAATGCCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260088" ref_strand="+" ref_description="SGN-E260088 [cLEG-52-D14]">
      <seq>gttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggcaaaggtggaggagttatctaacagctaagacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52761" stop="51854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52461" g_stop="52154" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E260088" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52461" e_stop="52154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGA</genome_strand>
        <mrna_strand>GTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCTAACAGCTAAGACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253163" ref_strand="+" ref_description="SGN-E253163 [cLEG-26-M15]">
      <seq>taatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtagatcgtcttctgtaaaggagtttgcagttcgtttggtttgtccaattgagaatgtaggagctgtaattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54188" stop="51889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53888" g_stop="53609" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52473" g_stop="52189" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="565" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E253163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53888" e_stop="53609"/>
          <exon e_start="52473" e_stop="52189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGC</genome_strand>
        <mrna_strand>TAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257990" ref_strand="+" ref_description="SGN-E257990 [cLEG-48-L15]">
      <seq>tgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaaggtcccaacatcagttgctgtcgtcacccagcatatataggtctggtgctggacttgtgaatcctcatgctggtagccaagtcatgggtgtgacatcattgatgggtccttacgcaagttacaaaagtgatggtagaagtacatcatcttctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="52765" stop="51945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52465" g_stop="52245" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E257990" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52465" e_stop="52245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAA</genome_strand>
        <mrna_strand>TGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTACATCATCTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347563" ref_strand="+" ref_description="SGN-E347563 [cTOF-26-E22]">
      <seq>ctgctttcacagaacacttgatacaggtttgctagacaaacaaaagggtggcacattcagctccttgacatggcaggccagaggaataactacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagtgagcacttgcccccttgtgctctaaactcggatgagcttctccagataaccggtgaagttgcagttgttaagagagcactttatcaagtagcagcacgcctccatgataatccatcaagggtccaacatcagttgctgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="56004" stop="52077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="55687" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="46" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53609" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="645" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52473" g_stop="52377" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="742" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E347563" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53609"/>
          <exon e_start="52473" e_stop="52377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCACAGAACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGT</genome_strand>
        <mrna_strand>CTGCTTTCACAGAACACT................................................................................................................TGATACAGGTTTGCTAGACAAACAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGGTCCAACATCAGTTGCTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604381" ref_strand="+" ref_description="SGN-E604381 [74515]">
      <seq>ttcttctccagaacacttgatacaggtttactagacaaacaaaagggtgacacattcagctccttgacatggcaggccagaggaacaactacggtaagagaatgcaatcggaatctgactattcaaggagtgatggaagtaagagaaggactccaactgatgaaaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaactgaggacagaaactaattcaaagattaggattagcgagaccatacctggctgcgaggagcgtgtggtaactatttatagtggaagtgaagaaactaatgtctctgaagatactggtgacctgatttcacctgctcaagatgctctattcagggtgcatgacagagtccttgctgaagacctgcgtatggacgaagatctggaggatcatcagcagattactgtaaggatgcttgtcccatcagatcagataggttgtgtgatagggaaaggtggactagtgatccagaatttacgaagtgaaacaggtgcgcagattcgggtgttaagcagttgagcacttgccccctttgtgctctaaactcgggatgagctttctccagataaaccggtgagaggtgcagttgttaagaaagcactttatcaaggtaagcaagaacgcttccatgataatccatcacggtcgcaacatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="55874" stop="52085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55703" g_stop="55687" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="45" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53609" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="651" r_length="606" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135">
            <donor d_prob="0.850" d_score="0.83"/>
            <acceptor a_prob="0.998" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52473" g_stop="52385" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="745" r_length="94" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E604381" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55703" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53609"/>
          <exon e_start="52473" e_stop="52385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCACAGAACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCAT---CAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAG-TGAGCACTTGCCCCC-TTGTGCTCTAAACTC-GGATGAGC-TTCTCCAGGTAGTAGCAGGGTCCTGCTCACAATACTTCCGAGTATAGTTTATGTTTACCGTAATTCTGTGTTATCTCTTAGTTCTTTAGATAAGTAGAAGCATTCATTATGCATTTACTCTAGAGTACTTTCAGGCATGTATGGTTTAGTTTACCTGATGTAATTTCATCAGAATTTTAAGTGCGAGCACTTTCCCTGATCGTATTTGATTTTGTACCTGGTGGAATTGTTGCGATCAGTGCAAGCTGGCGTAGACACCATGTCATATAAAAAAAGGAAGTTGCTTCACAAAATATAATAGGTAGCTAGATATGAGATTTTCGAGCTTGATTAAAAAACATGAGTTTTTTTTTTACATTTTCCAGCCTTGGTGCCTCTTGCAATGAAGAGGCTTGTTCCTATGCTGGCTGATTGCCTGGTTTAGCTTGTCAACCAATTTATCAATATGTTACTTCCAAACTTTTCGATTAGATTCTAGATTTCCTGTTGGCCTAAGATGAATTTAAATGGGGAATATGTTGCATGGATTGTATGTCAGTGTATACGTGTGAGTTTTGCAAAAATCTTCAGTTTTAGAAAACTCCTAATTTACCTTAGAAGATCAGTATATTGGAGTAAAATGAGTTCATCGAGCAGAATTCTTATAAAGGATTCATGCATTGACTGACTAGTTTGAGATTGAGGGGTAGTTGATTAGTATGGAGTATAAAACTGCGTGAGCAGAAACTCAAACATGATTCATATGGTTCCTTTTTTGAGAAGGCAAAGTACATTTTATAAATAAATTAGCACAAAGGAAGTGGGGTTACATCTGAGAAATATTTCTAAAAATTAGAAGACATAAAAGGAGTACCCCATCTAATCCTGAAGGGCTTCTAACAAGATTGGTTTGGTTTAAAAGCAGTTTTTTTTTATCTGTTAGCTATATCCATTTTGTAGGGCATCTATTTGCGAAACTTGATGGTACCAAAAACGCTGACTAGGAATAATGAAAGAAATAGACAATCAATCGTTGAGCGAGCAACTGCTGTATTCAAGTTTTATTTGCAAATTCCTCGCTATGCCTTCACTTTTAATGATATGTATATCTGGTTACATGAAAATATAAATGATGTGTTAAAGAGATTCTTCTTTTATTTTCAGAT-AACCGGTGA-AGTTGCAGTTGTTAAGAGAGCACTTTATCAA-GT-AGC-AGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTT</genome_strand>
        <mrna_strand>TTCTTCTCCAGAACACT................................................................................................................TGATACAGGTTTACTAGACAAACAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACATTCAGCTCCTTGACATGGCAGGCCAGAGGAACAACTACGGTAAGAGAATGCAATCGGAATCTGACTATTCAAGGAGTGATGGAAGTAAGAGAAGGACTCCAACTGATGAAAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAACTGAGGACAGAAACTAATTCAAAGATTAGGATTAGCGAGACCATACCTGGCTGCGAGGAGCGTGTGGTAACTATTTATAGTGGAAGTGAAGAAACTAATGTCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTCAGGGTGCATGACAGAGTCCTTGCTGAAGACCTGCGTATGGACGAAGATCTGGAGGATCATCAGCAGATTACTGTAAGGATGCTTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAAAGGTGGACTAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTTGAGCACTTGCCCCCTTTGTGCTCTAAACTCGGGATGAGCTTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCGGTGAGAGGTGCAGTTGTTAAGAAAGCACTTTATCAAGGTAAGCAAGAACGCTTCCATGATAATCCATCACGGTCGCAACATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329724" ref_strand="+" ref_description="SGN-E329724 [cTOD-3-N20]">
      <seq>aacacttgttacaagtttgctagacaaacaaaaaggtggcgcattgagctccttgacatggcaggccagaggaataactacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttaaggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgataaggaatgctggacaagtgatccagaatttacgaagtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="55874" stop="53382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55692" g_stop="55687" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55574" g_stop="55547" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="34" r_length="28" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54207" g_stop="53682" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="560" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E329724" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55692" e_stop="55687"/>
          <exon e_start="55574" e_stop="55547"/>
          <exon e_start="54207" e_stop="53682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGTAATGTTCTTGTTTTCTCTCTCTCCATTTTTTTTGTGTTTATAGATTATTTTGTGCTTTTTATGCAAAATTAACAAGATTAATCATTTACCCTTTTTTCTAATCTTGGCAGTGATACAGGTTTGCTAGACAAACAAAAGGTGAGACCTTTTTTTTTTTTTTTTGGTTGCTGTTTTTGTTCTTTTGATTCTAGAGAAGTATAGGAAGAACTGAAGTTTTTTTATTTTGGGTGCTTAAATTGTATCTGGATTTGTTTTTTTTGGTGAAGTTGGCTACTTTGATGGGAATTGTGGAGTGAGAGATTGTATTCCTTCAAGGGTATTCAATTTTAATCATGAATTTGGTTTTCTGTGTAAAAAAGAGGAGAATTATGGTGTGTGTGAAAATTGCTTCTGTGTCTGTTTTTTTTTGTTTGTAAAGTTGATTGCTTTGAAGAAAATTATGTAGACCTAGGGTTTTATTGCAGTAAGAGAGGGTCTTTAATCTGAAACATGTAACAAGATTAATCCTTTACCCTTTTCTCAAATCTTGGCAGTGATACAGGTTTACTAGTCAAACAAAAGGTGAGACCTTTATGTTTTTTTTTTGGTTGCTTTTTTTGTTCTTTTGATTCTGGAGAAGTGTAGTGAAGAACTGAAGTTTTTTTATTTTGGGGGCTTTTTTTTTTTGGTACAGTTGGCTAGTTTGATGGGAATTATGGAGTGGTAGAGATTGTATTTCTACGAGGGTATTCAATTTCAATCATGAATTTGGTTTTCTGTGTTAAAAGGAGGAGAAATATGGTGTGTCCGAAAATTGCTAGTGTGTCTTTTTTTTTTTGTAAAGTTGATTGCTTTGAAGTAAATTATGTAGTGCTAGGGATTTTATTGCAGTAAGAGAGGGTCTTTAATCTCAAACATTTAATTTGTATGTGTGTGAACTTGCAATTTGTTGCTTGGGTGATTGCAAGAGCTTTAAGAATTAGGAAGCAAAGTAGATTCAACATCTATTGTGTATATAAAAAAGATAATCTTAATCCTGTATTGATAGTGTAATTTTTCTTTCCTACCTGGCTCAGACCCTTGAGAGTTGTTGGGTATTTTGTCATTGGTAAGTTTTAAAAGAAAATAGAAGTCTTGGGTGAGTGAAAATTGCTTCTTGATTTGAGGTTGTCAGGTTGATCACTTTAAAGGAAAATCTGGACTGCTAGAGAAAACAGGGTCTTCAATCATTTTGGATTTTTTTCTGTGATTTTGTGTCACAACTTCCTTGGTTGGTTGGTAAAGCCTTTACTTGGTCTTATGGTTACTGAGTGAAGCAATATTGCTTTACTGGGAAATTGATATTGCATTTAATGTTATTTGCACTACTTCGAATTGTGCCTTATTTCTAGGTTATGTTGTTTGTATGTTCCACCTCATGACATTCATTCTACGTAAATAACACTTCATGAGTTAGTTTGTTTCTGATCCAAGTTGATGCTGAGTATTTGGTTTGTAGGGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAAC</genome_strand>
        <mrna_strand>AACACT................................................................................................................TGTTACAAGTTTGCTAGACAAACAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGCATTGAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAAGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAAGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271637" ref_strand="+" ref_description="SGN-E271637 [cLEM-23-I9]">
      <seq>aacaaaagggtggcacattcagctccttgacatggcaggccanaggaatagcgtacggtaagagaatgcaatcggaatccgactattccaggagtgatggaagtaagaggaggactccaactgatgagaaggaatcaaattccattggaccagaggatactgtttttcgttatttatgccccacaggaaaaattggaagtatcattggagttggtggggacattgcaaaacaattgaggactgaaactaattcaaagattaggattagtgagaccatacctggctgcgaggagcgtgttgtaactatttatagtggaagtgaagaaactaatatctctgaagatactggtgacctgatttcacctgctcaagatgctctatttagggtgcatgacagagtccttgctgaagagctgcgtatggacgaagatctggaggatcatcagattactgtaaggatgattgtcccatcagatcagataggttgtgtgatagggaatgctggacaagtgatccagaatttacgaagtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="54509" stop="53382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54207" g_stop="53682" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="535" r_length="527" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E271637" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54207" e_stop="53682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAAC-TACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAAC</genome_strand>
        <mrna_strand>GGTGGCACATTCAGCTCCTTGACATGGCAGGCCANAGGAATAGCGTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287342" ref_strand="+" ref_description="SGN-E287342 [cLES-15-C13]">
      <seq>caaagcagacatttttattccttcaaagttcatttccagtctcttcactccaataattcaaacatttgtgcagttaattaggacacttgaagtagtcctaagaagtgaggggaaaactcacgctcttggtaaatacatgaagagatggagtagttactagagttgcaccctttacgctgaaaatcgagagctggtgagcatcaattgctagggatggcagaggctcaacttcatcccgatctgacagtagtgactgtgattcaatcaccaagtcccattcatcttatcgtagcttcccaagtcgccgtttctttatgtcaaaacccatacatcctctgtcatttccaactgaaacaacacctagaagagaagctattgacagcctctcagcaggttttctcgaatttgatgcctcaacatcacaaagagataaacaccgcttgagcagtgctagtggcagtcttgacttaacagaggcttctgaatcttttcattctgacttcctaagtaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59293" stop="65366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59593" g_stop="59659" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59660" i_stop="60830" i_length="1171">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60831" g_stop="60956" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="193" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60957" i_stop="64745" i_length="3789">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64746" g_stop="65066" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="515" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E287342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59593" e_stop="59659"/>
          <exon e_start="60831" e_stop="60956"/>
          <exon e_start="64746" e_stop="65066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTTGTAAGCTTCCCTCAACACCCTTTTAGCTTTACTGTATTTCTATGTCCAATTTTTCACTTCAATGAACACATATCTCTAATCTTGATTTTGGGGTTCTGGGAATTTCATTTCGAGTAAATATTGTGTCTTTATGTTTTCTTTTCTTTTTCATTTGGTGTTTGATGATCAAGATCAGTTTTTGAGGTGTTTTTGGAGATGGGTTTTGGTTTTTACTATGTGGGGTTTCTAATAATAATGTTGTTATAAGGTTATGATTTTGGTTTTTGAGTGGTTTGGTATTTACCTTCAGTTTAACTCTTTGTTTTGATGGATTTTTATGTAGTTGTGGTTTTCATGGTTGACTTGTAATGATTGTGTTTCCTTAGATGAAAGTTGTTTACTGTTTAATGTTTGTATGCGCTGCTTGTGTTCAAAAATGAAAAATGAAATGGCTTGAGGACCAAATAGACTAGCATTTGTTTTCTTCAGTTTCTCTCTTCCAACTTGTGTTTTGAGTGAAATTATGGATTTTGCTGTCCTTGATCAATTTAGGATTTGGGTGTAGTTGTTGATTAATTGAGTTAAGTGACCAAGTACAACTCACAATTGTAACAGAGATAAAAAGTTATGAGTAATCATGCTAAGTATAATATACCTCAATAGGGATTTAGTTACGAAGTTGTTCACATTTTTTTGGAAGAATGTAACAATTCTGATGACCTTCCTTCTGGTGTGAATTGGACCCATATAGCTCCTCAACATTGACCATAGGGAGAAAGCTTCAGTGGCTTCGTGTGTCACCTTGAAGAACAGTTTTTTATGCCATTTCTAGCTTTGTTGTGTCGCCTTGCATAACAGTTCTGTATGCCATTTCTTGCTTTCATGTTATGCACCTTCGTGTTACTTATATTTATTTGCTATGTTTGTTGCACTTAATGTTTTTCCTTTTTCTAGTCCAGCCTGTTAACTGTGGTAATCATCTATGTTCTGTCCTGACCTTTTCCGTTTTATGAATGTTTATTGGTGATTATCAAGCTAGTGAAGGATGATACTGTTATCAACTTTACCTGCATGTTATTTTCTTGCATCCGTGTAGTTCAGTTTTGTCTGAATTCCTTGGAGATCTAATCATGTCATGCTTGTATGCTTTTCAGTGGAATTGTTGTATATAATTGGTATATGCACATACCAGGTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTGGTGAGCATTGTTAAATCGTGTTCCCTTTGTTGTGTTGCTGAAACTGAATGGAGTAGTTACTAGAGTTGCTCTTTATTCTGAAAATTGAGAATTGAGAATTGAGAGAAGCAAGTACCAACATAATACTTGTGAGTCTTGTGAAACATAGCTAAGACGGGGTCCCTTTGTTGTGTGGCTGCAAGGCCACATGGGTCCAATGCAGCTAGTGGAGAATGGTCCATGGGGCCACATGAGCCTTACTGGCGGACTAATTCAAGCTTCTCCCCAGCACCATCCAGATGGGATTTCCGCTTCCAACCTGAAACATTATCCTTTGGCTCTAATGATGGAGTTCAATTGTATGGATCTTCTGCTTCATCAAACAGTAGAGATAGTAGAAGTTGGGTGAGGGGGAACCAATTGGCCAATCACCAATATGTCATATCAGATGGTGTTGGTGCATACTGTAGTAGCCCATCGGACATCTCTCCGGCACAACAGTGGACTCCACCAGCTATCCAAGAAATCAACATTGATGATTTTGGTACTTCAAGAAGGGGTAAGCATACTGATTTTGCAACTTCTTTTTTTGTATATAATGAACTTCCAAGGATGCTTAGTTGGGTTTCGGTCTCTTACTTTCATGTACTACTTGCTTTCTCCATTACTAGCTTCATTTATGTTGACTAAATAATCAGCTGATTGTTTTTTCATATATATGTACATAATTTTGGATGTGATTTGCGTGGAGTTTGATATAAGGTTCTCATTTGTCTGTTTCTGCTATTCTGTATTGCTTGTAAATGGGGATTTTCTATGGGACACTGTAATTTAAGGTAATTTTGACTTGGTGTCAGTCTAAACTCTAAAATGCATAAGTATTCAGAATTTTCGTGCAAAACTAATTTTGGTATCCTGCAGCTCCTTTGTCGTATTTTTATGTGCTCTTTAGTTGGGGTTTTGGTGCAGTTCATGAGCTGATTTTCTTAGTTTAAAATTGAAGGAAAAAACGTACTATTTGTTGATGATATTGGAATTAGGTCTGTTTAAGATAATAATTAGAATGTTGTACTTGAAAAAAAAGAGTGTATTCCCATCATTAGTCTCATCGATGTGTTAGTATGTACCTTTGAGTCTCTAATTATCTTTGGCTGGACCTTCGTAAGCAAATTGTATATTGTATAATCAATGAGATGGGGGTTAGCCGTTGGTGCATAGCCATGGTAGGAGGCGCAATGCCTGTGCAGAACTAATTTTGGTATTCTGCAGCCCCTTTGTCGAGTCTTTATGTGCTCTTTAATTGAGTTTTTGGTGCAGTTCATGAACAGATTTTCTTCATTTAAAGTTAATGAAAAATGTACAATTTGTTTATGATATTGAAAGTAGGTTAGTTTAAGATAATAGTTAGAAAGTGGTAGTTGGACAAAAAGTGTTTGACTGGTTGGTAATTCTTGACATGATGTCTATTGATGATAAGGTAGCAATTTTGTGTTAGCTGATCTGGATTTTTGAGGTAATAAGCTTTGCTGTTCAGTGTAATAAATTGGGATGCGGTTAGAAGGACAAGTAGTTCTAACATATTAACAGAGAATTCCATCGTTTGGTTGGGTGAGTTGGCACAAGTAGTGCATTTCTGTCATGTCCTAAACCCATGTTAGGTAGACCAACACTCGGTGCCTTGATTTGATCGAGCGAATCAGCTTTACATGATTGTATGTGCTAGGCATATTAAAAGAATATACACAATGCCTCAGAATTCAACATATACGAGCAAGTACTTCTTTTATACATATGGAACCCCAAAACAAAATAACTAGGTCTATGAATTACCCAAAATACATAGGGCAATACTAGAGATTTACCGAAAATACATGATCATGCTCTGAACATACTAGTCTATGAAGCCTCTACTACATGCCATGAACTGAAAAAGTTTTGGGACTATGCCTTGGCATACCCAAAAGGCCAAACTATCTATGTACATAGCATGAAACATGATAAAGGCCCTCAATAGTAGTGGGACTCACCAAAGGCATGTGAAAGAGAATGAAGTACCACAATTCTATAATGCATCTAAGAGAACATAAGAGTATCCTAGACTTCAAAGTAATACCTTGAATATCAGAAGCAAATGTAACTGTAAATGCTTTATGTGGAAATGCTTTTTGTAGTACTTGAAATCTATAACTTTGAACATACATAGAGCTTTTATGTAACTTCATACTTTGATCTTAAATCATAAATATAACTTTTCTGGAAACATCATAATTCTTTGGAAACAGATATATTTCTCATGGGCAGATCTTAGTCACTGTCATAACTCATGAAGCATACATGATAATTCACCATGTGTACTGCATGCATTCAATCAACATCTGAATGGCTGAGCCGACCTACCACGATGCTGTGTGGGTCCGATGCTGTTTGTATATGACATAAGCATAATCTGTATCCTAACTGAAAGAATCCAAACCAAAGGAAACTGTCTACTCCCCATTACGACTCTTTACACCAACTTATGTAGACTTAGGTGTTGGATTCTTTTGGCAACACCTTCTCAATATCTAAGGGTGCTCTCAAAACATATATTGTATAACTTGACACTTGTCCCTATTATAGAATCAAATCTGTGCCTCATTGGCCCTTTTGTCAAGTTATAATATATAGCTCAGTGGTCTATGATATCAAATCATAATCTGTGGCTCAATAGCCTATAGTATCTGTAGCTCAATAGCCTAAAATATCAAATCCAATCTGTGGCTCAATAACCTATGATGTCAAATCATAATCTGTGGCTCAATAGCCTATAATATTTGTGGCTCAGTAGCTTGAAATATCAAACCAAATCTCTGGATCATTAGCTATTCATATATCTCTAACATCATTTTATGAATCGTAACTTAAGTAAGGAAGACACTAGAAATATCATGTAAATCTTTTAAGGAACACATGAATCTAATGAATGCATAGGCATATAGAATATTAAGGGTAGATATGTGGCAGAAATGTCAAATTTGTATCCGACAAAGTAGCGGTGAGATGAAATCTTGGAGACCTCGAGAGATGTTTGGCCATTACATCAAATAAAGTGACAACCTCTTAGGTACCATATTTACTTTAATTAAAAACTCTTTTAAGTGACATTTAATCTATTTCATGAGTCATAGTATGCTTAAAACACCAAAATGTTTAGTTAAAGAACACTTACGAATGCCCCCTGGGCTTTGGTTTAAGGGCAATGCATTGCTATACTAGATGTGTGGGAGGCGACATCTAGAGTTCAAATTCTAGTTTAGTATTTACAGTAGAGATGAAGATCATCATCCACAATCTTAGGATCTTGATGTTAAAAAAAAGAGGAGAGTACTTGTTAAAAAAAAAGCGAGACCAGAGTAACCAACATCAAACAACATATAAAAGCCAATCCATCTCCATATGATATTGAATTATGTTTTCATTACAGTTATTGCGAGCGTGCTCTCCCCTTTGGACTTTGGTGATGTCTAAGTTAATGGTCGCTTCATGTTGAGCAGAGTCAAAGTTAGCAAGTTGATATGCTCAAAGAATCAATTCTGTTAATGCTCTTGGCACATTTGGCATTTTGGTTTCAACCAATGCTTTGTCATTCTGGATATTTTGCTGTACTGATTATTTTACTGTATTTTTTGCTTGGTAGATGCAATTACGAGGCCATTTTCATTTTCACCTACAATGGAGGTATGCATCTGTCTTGCTTTTCTCCACTAACTCCTTTCTTTTGAAGTTTGTAAGCTAAATACAGCTTTCTTATGACAATAAATTTCTTGACAGG-GAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</genome_strand>
        <mrna_strand>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572217" ref_strand="+" ref_description="SGN-E572217 [31335]">
      <seq>cagtctcctcactccaataattcaaacattttggaattgttgtgtataattggtatttgcacataccaggtgcagttcattaggacatttgaagtagtcctaagaagcgatcggggagaactcactctcttggtagatacgtgaagaaatggagtagttactagagttgccccttttacactgaaagttgagaactgacaagcattgttaaatcgtgttccctttgttgtgttactgaaactgaatggagtagttactagagttactctctattctgaaattgagaattgagagaagcaagtaccaacataatacttgtgagtcttgtgaaacatagctaagacggggtccctttgttgtgtggctgcaaggccacatgggtccaatgcagctagtggagaatggtccatggggccacatgagccttactggcggactaattcaagcttctccccagcaccatccagatgggatttccgcttccaacctgaaacattatcctttggctctaatgatggagttcaattgtatggatcttctgcttcatcaaacagtagagatagtagaagttgggtgagggggaaccaattggccaatcaccaatatctcataacagatggtgttggtgcatacggtagtagcccatcggacatctctccagcacaacagtggactccaccagctgtccaagaaatcaacattgattgattttggtacttcaagaagggatgcaaattacgagggccattttcattttcacccaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59329" stop="64948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59629" g_stop="59659" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59660" i_stop="60792" i_length="1133">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.837" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60793" g_stop="61494" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="728" r_length="697" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61495" i_stop="64611" i_length="3117">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64612" g_stop="64648" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="768" r_length="40" r_score="0.811"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E572217" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59629" e_stop="59659"/>
          <exon e_start="60793" e_stop="61494"/>
          <exon e_start="64612" e_stop="64648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCTTCACTCCAATAATTCAAACATTTGTAAGCTTCCCTCAACACCCTTTTAGCTTTACTGTATTTCTATGTCCAATTTTTCACTTCAATGAACACATATCTCTAATCTTGATTTTGGGGTTCTGGGAATTTCATTTCGAGTAAATATTGTGTCTTTATGTTTTCTTTTCTTTTTCATTTGGTGTTTGATGATCAAGATCAGTTTTTGAGGTGTTTTTGGAGATGGGTTTTGGTTTTTACTATGTGGGGTTTCTAATAATAATGTTGTTATAAGGTTATGATTTTGGTTTTTGAGTGGTTTGGTATTTACCTTCAGTTTAACTCTTTGTTTTGATGGATTTTTATGTAGTTGTGGTTTTCATGGTTGACTTGTAATGATTGTGTTTCCTTAGATGAAAGTTGTTTACTGTTTAATGTTTGTATGCGCTGCTTGTGTTCAAAAATGAAAAATGAAATGGCTTGAGGACCAAATAGACTAGCATTTGTTTTCTTCAGTTTCTCTCTTCCAACTTGTGTTTTGAGTGAAATTATGGATTTTGCTGTCCTTGATCAATTTAGGATTTGGGTGTAGTTGTTGATTAATTGAGTTAAGTGACCAAGTACAACTCACAATTGTAACAGAGATAAAAAGTTATGAGTAATCATGCTAAGTATAATATACCTCAATAGGGATTTAGTTACGAAGTTGTTCACATTTTTTTGGAAGAATGTAACAATTCTGATGACCTTCCTTCTGGTGTGAATTGGACCCATATAGCTCCTCAACATTGACCATAGGGAGAAAGCTTCAGTGGCTTCGTGTGTCACCTTGAAGAACAGTTTTTTATGCCATTTCTAGCTTTGTTGTGTCGCCTTGCATAACAGTTCTGTATGCCATTTCTTGCTTTCATGTTATGCACCTTCGTGTTACTTATATTTATTTGCTATGTTTGTTGCACTTAATGTTTTTCCTTTTTCTAGTCCAGCCTGTTAACTGTGGTAATCATCTATGTTCTGTCCTGACCTTTTCCGTTTTATGAATGTTTATTGGTGATTATCAAGCTAGTGAAGGATGATACTGTTATCAACTTTACCTGCATGTTATTTTCTTGCATCCGTGTAGTTCAGTTTTGTCTGAATTCCTTGGAGATCTAATCATGTCATGCTTGTATGCTTTTCAGTGGAATTGTTGTATATAATTGGTATATGCACATACCAGGTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGA--GGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTGGTGAGCATTGTTAAATCGTGTTCCCTTTGTTGTGTTGCTGAAACTGAATGGAGTAGTTACTAGAGTTGCTCTTTATTCTGAAAATTGAGAATTGAGAATTGAGAGAAGCAAGTACCAACATAATACTTGTGAGTCTTGTGAAACATAGCTAAGACGGGGTCCCTTTGTTGTGTGGCTGCAAGGCCACATGGGTCCAATGCAGCTAGTGGAGAATGGTCCATGGGGCCACATGAGCCTTACTGGCGGACTAATTCAAGCTTCTCCCCAGCACCATCCAGATGGGATTTCCGCTTCCAACCTGAAACATTATCCTTTGGCTCTAATGATGGAGTTCAATTGTATGGATCTTCTGCTTCATCAAACAGTAGAGATAGTAGAAGTTGGGTGAGGGGGAACCAATTGGCCAATCACCAATATGTCATATCAGATGGTGTTGGTGCATACTGTAGTAGCCCATCGGACATCTCTCCGGCACAACAGTGGACTCCACCAGCTATCCAAGAAATCAACATTGA-TGATTTTGGTACTTCAAGAAGGGGTAAGCATACTGATTTTGCAACTTCTTTTTTTGTATATAATGAACTTCCAAGGATGCTTAGTTGGGTTTCGGTCTCTTACTTTCATGTACTACTTGCTTTCTCCATTACTAGCTTCATTTATGTTGACTAAATAATCAGCTGATTGTTTTTTCATATATATGTACATAATTTTGGATGTGATTTGCGTGGAGTTTGATATAAGGTTCTCATTTGTCTGTTTCTGCTATTCTGTATTGCTTGTAAATGGGGATTTTCTATGGGACACTGTAATTTAAGGTAATTTTGACTTGGTGTCAGTCTAAACTCTAAAATGCATAAGTATTCAGAATTTTCGTGCAAAACTAATTTTGGTATCCTGCAGCTCCTTTGTCGTATTTTTATGTGCTCTTTAGTTGGGGTTTTGGTGCAGTTCATGAGCTGATTTTCTTAGTTTAAAATTGAAGGAAAAAACGTACTATTTGTTGATGATATTGGAATTAGGTCTGTTTAAGATAATAATTAGAATGTTGTACTTGAAAAAAAAGAGTGTATTCCCATCATTAGTCTCATCGATGTGTTAGTATGTACCTTTGAGTCTCTAATTATCTTTGGCTGGACCTTCGTAAGCAAATTGTATATTGTATAATCAATGAGATGGGGGTTAGCCGTTGGTGCATAGCCATGGTAGGAGGCGCAATGCCTGTGCAGAACTAATTTTGGTATTCTGCAGCCCCTTTGTCGAGTCTTTATGTGCTCTTTAATTGAGTTTTTGGTGCAGTTCATGAACAGATTTTCTTCATTTAAAGTTAATGAAAAATGTACAATTTGTTTATGATATTGAAAGTAGGTTAGTTTAAGATAATAGTTAGAAAGTGGTAGTTGGACAAAAAGTGTTTGACTGGTTGGTAATTCTTGACATGATGTCTATTGATGATAAGGTAGCAATTTTGTGTTAGCTGATCTGGATTTTTGAGGTAATAAGCTTTGCTGTTCAGTGTAATAAATTGGGATGCGGTTAGAAGGACAAGTAGTTCTAACATATTAACAGAGAATTCCATCGTTTGGTTGGGTGAGTTGGCACAAGTAGTGCATTTCTGTCATGTCCTAAACCCATGTTAGGTAGACCAACACTCGGTGCCTTGATTTGATCGAGCGAATCAGCTTTACATGATTGTATGTGCTAGGCATATTAAAAGAATATACACAATGCCTCAGAATTCAACATATACGAGCAAGTACTTCTTTTATACATATGGAACCCCAAAACAAAATAACTAGGTCTATGAATTACCCAAAATACATAGGGCAATACTAGAGATTTACCGAAAATACATGATCATGCTCTGAACATACTAGTCTATGAAGCCTCTACTACATGCCATGAACTGAAAAAGTTTTGGGACTATGCCTTGGCATACCCAAAAGGCCAAACTATCTATGTACATAGCATGAAACATGATAAAGGCCCTCAATAGTAGTGGGACTCACCAAAGGCATGTGAAAGAGAATGAAGTACCACAATTCTATAATGCATCTAAGAGAACATAAGAGTATCCTAGACTTCAAAGTAATACCTTGAATATCAGAAGCAAATGTAACTGTAAATGCTTTATGTGGAAATGCTTTTTGTAGTACTTGAAATCTATAACTTTGAACATACATAGAGCTTTTATGTAACTTCATACTTTGATCTTAAATCATAAATATAACTTTTCTGGAAACATCATAATTCTTTGGAAACAGATATATTTCTCATGGGCAGATCTTAGTCACTGTCATAACTCATGAAGCATACATGATAATTCACCATGTGTACTGCATGCATTCAATCAACATCTGAATGGCTGAGCCGACCTACCACGATGCTGTGTGGGTCCGATGCTGTTTGTATATGACATAAGCATAATCTGTATCCTAACTGAAAGAATCCAAACCAAAGGAAACTGTCTACTCCCCATTACGACTCTTTACACCAACTTATGTAGACTTAGGTGTTGGATTCTTTTGGCAACACCTTCTCAATATCTAAGGGTGCTCTCAAAACATATATTGTATAACTTGACACTTGTCCCTATTATAGAATCAAATCTGTGCCTCATTGGCCCTTTTGTCAAGTTATAATATATAGCTCAGTGGTCTATGATATCAAATCATAATCTGTGGCTCAATAGCCTATAGTATCTGTAGCTCAATAGCCTAAAATATCAAATCCAATCTGTGGCTCAATAACCTATGATGTCAAATCATAATCTGTGGCTCAATAGCCTATAATATTTGTGGCTCAGTAGCTTGAAATATCAAACCAAATCTCTGGATCATTAGCTATTCATATATCTCTAACATCATTTTATGAATCGTAACTTAAGTAAGGAAGACACTAGAAATATCATGTAAATCTTTTAAGGAACACATGAATCTAATGAATGCATAGGCATATAGAATATTAAGGGTAGATATGTGGCAGAAATGTCAAATTTGTATCCGACAAAGTAGCGGTGAGATGAAATCTTGGAGACCTCGAGAGATGTTTGGCCATTACATCAAATAAAGTGACAACCTCTTAGGTACCATATTTACTTTAATTAAAAACTCTTTTAAGTGACATTTAATCTATTTCATGAGTCATAGTATGCTTAAAACACCAAAATGTTTAGTTAAAGAACACTTACGAATGCCCCCTGGGCTTTGGTTTAAGGGCAATGCATTGCTATACTAGATGTGTGGGAGGCGACATCTAGAGTTCAAATTCTAGTTTAGTATTTACAGTAGAGATGAAGATCATCATCCACAATCTTAGGATCTTGATGTTAAAAAAAAGAGGAGAGTACTTGTTAAAAAAAAAGCGAGACCAGAGTAACCAACATCAAACAACATATAAAAGCCAATCCATCTCCATATGATATTGAATTATGTTTTCATTACAGTTATTGCGAGCGTGCTCTCCCCTTTGGACTTTGGTGATGTCTAAGTTAATGGTCGCTTCATGTTGAGCAGAGTCAAAGTTAGCAAGTTGATATGCTCAAAGAATCAATTCTGTTAATGCTCTTGGCACATTTGGCATTTTGGTTTCAACCAATGCTTTGTCATTCTGGATATTTTGCTGTACTGATTATTTTACTGTATTTTTTGCTTGGTAGATGC-AATTACGA-GGCCATTTTCATTTTCA-CCTACAAT</genome_strand>
        <mrna_strand>CAGTCTCCTCACTCCAATAATTCAAACATTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTGTTGTGTATAATTGGTATTTGCACATACCAGGTGCAGTTCATTAGGACATTTGAAGTAGTCCTAAGAAGCGATCGGGGAGAACTCACTCTCTTGGTAGATACGTGAAGAAATGGAGTAGTTACTAGAGTTGCCCCTTTTACACTGAAAGTTGAGAACTGACAAGCATTGTTAAATCGTGTTCCCTTTGTTGTGTTACTGAAACTGAATGGAGTAGTTACTAGAGTTACTCTCTATTC-------TGA-AATTGAGAATTGAGAGAAGCAAGTACCAACATAATACTTGTGAGTCTTGTGAAACATAGCTAAGACGGGGTCCCTTTGTTGTGTGGCTGCAAGGCCACATGGGTCCAATGCAGCTAGTGGAGAATGGTCCATGGGGCCACATGAGCCTTACTGGCGGACTAATTCAAGCTTCTCCCCAGCACCATCCAGATGGGATTTCCGCTTCCAACCTGAAACATTATCCTTTGGCTCTAATGATGGAGTTCAATTGTATGGATCTTCTGCTTCATCAAACAGTAGAGATAGTAGAAGTTGGGTGAGGGGGAACCAATTGGCCAATCACCAATATCTCATAACAGATGGTGTTGGTGCATACGGTAGTAGCCCATCGGACATCTCTCCAGCACAACAGTGGACTCCACCAGCTGTCCAAGAAATCAACATTGATTGATTTTGGTACTTCAAGAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATTACGAGGGCCATTTTCATTTTCACCCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550238" ref_strand="+" ref_description="SGN-E550238 [TUS-5-P24](-)">
      <seq>atgcgagaggttctttcacaaagatcgccttggagttcccgacgaattgtgagaagtggagatatgccagttgctggggtcctttcatgccgccatgtatttcatgctgaatgtttggagcaagctacaccaaaatcatgtaaaagtgatcctccatgcccaatctgtgccaagcttgaagaaggtagttctccagagcagcgagttttctccaagttctttcctaggcttaaaccattcagtgaagaaggaccatccaagccttggggttgtgcccattctggtgattgtgtcgagggggctttgcacggaccatctcgtggcactatgctctcactaaacaagaaccgaattaggaaaaatctttctttgaaaggtgattcaggcaaggattttcctggtaaattaagaaaaactaatacattttcgtcacagctttttattggatcagttgatcatgcaatggtgggatcttcaaaagcatcagcaggttccgggctgaagtaacaactgaattttgtatataattgcaggctgatgtccgtggcctttcgtggttggtgtcctaatcgtcttaacttctcctgtttagaatctttagtggcttaatcatgttgtaaaatgtaatgtggtggaaattgtgtatgcacttgaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="64799" stop="66058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65099" g_stop="65758" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E550238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65099" e_stop="65758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGAGAGGTTTCTTTCACAAAGATCGCCTTGGAGTTCCCGACGAATTGTGAGAAGTGGAGATATGCCAGTTGCTGGGGTCCTTTCATGCCGCCATGTATTTCATGCTGAATGTTTGGAGCAAGCTACACCAAAATCATGTAAAAGTGATCCTCCATGCCCAATCTGTGCCAAGCTTGAAGAAGGTAGTTCTCCAGAGCAGCGAGTTTTCTCCAAGTTCTTTCCTAGGCTTAAACCATTCAGTGAAGAAGGACCATCCAAGCCTTGGGGTTGTGCCCATTCTGGTGATTGTGTCGAGGGGGCTTTGCACGGACCATCTCGTGGCACTATGCTCTCACTAAACAAGAACCGAATTAGGAAAAATCTTTCTTTGAAAGGTGATTCAGGCAAGGATTTTCCTGGTAAATTAAGAAAAACTAATACATTTTCGTCACAGCTTTTTATTGGATCAGTTGATCATGCAATGGTGGGATCTTCAAAAGCATCAGCAGGTTCCGGGCTGAAGTAACAACTGAATTTTGTATATAATTGCAGGCTGATGTCCGTGGCCTTTCGTGGTTGGTGTCCTAATCGTCTTAACTTCTCCTGTTTAGAATCTTTAGTGGCTTAATCATGTTGTAAAATGTAATGTGGTGGAAATTGTGTATGCACTTGAAAAAG</genome_strand>
        <mrna_strand>ATGCGAGAGG-TTCTTTCACAAAGATCGCCTTGGAGTTCCCGACGAATTGTGAGAAGTGGAGATATGCCAGTTGCTGGGGTCCTTTCATGCCGCCATGTATTTCATGCTGAATGTTTGGAGCAAGCTACACCAAAATCATGTAAAAGTGATCCTCCATGCCCAATCTGTGCCAAGCTTGAAGAAGGTAGTTCTCCAGAGCAGCGAGTTTTCTCCAAGTTCTTTCCTAGGCTTAAACCATTCAGTGAAGAAGGACCATCCAAGCCTTGGGGTTGTGCCCATTCTGGTGATTGTGTCGAGGGGGCTTTGCACGGACCATCTCGTGGCACTATGCTCTCACTAAACAAGAACCGAATTAGGAAAAATCTTTCTTTGAAAGGTGATTCAGGCAAGGATTTTCCTGGTAAATTAAGAAAAACTAATACATTTTCGTCACAGCTTTTTATTGGATCAGTTGATCATGCAATGGTGGGATCTTCAAAAGCATCAGCAGGTTCCGGGCTGAAGTAACAACTGAATTTTGTATATAATTGCAGGCTGATGTCCGTGGCCTTTCGTGGTTGGTGTCCTAATCGTCTTAACTTCTCCTGTTTAGAATCTTTAGTGGCTTAATCATGTTGTAAAATGTAATGTGGTGGAAATTGTGTATGCACTTGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574280" ref_strand="+" ref_description="SGN-E574280 [33722]">
      <seq>cccacatatattggttcaatgatcaaagatcagttaaaaacttacacaaaagatgcaatttgtttgaatcctttttaagtgcatacacaatttccaccacattacattatacaacatgattaagccactaaaaattctaattcaataaacaggaaaagttaagacgattaggacaccaaccacgaaaggccacggacatcagcctgcaattatatacaaaattcagttgttacttcagcccggaacctgctgatgcttttgaagatcccaccattgcatgatcaactgatccaataaaaagctgtgacgaaaatgtattagtttttcttaatttccccgggaaattccttggcctgaattacctttcaaagaaagatttttcctaattcggttcttgtttagtgagagcatagtgccatgagatggtccgtgcaaagccccttcgacacaatctccagaatgagcacaacccaaggcttggatggtccttcttcactgaatgttttaagcctaggaaagaacttggagaaaactcgctgctctggagaactaccttcttcaagcttggcacagattgggcatggaggatcacttttacatgattttggtgtagcttgctccaaacattcagcatgaaatacatgggcggcatgaaaggactccagcaactgggcatatcttccacttctcacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="66130" stop="64843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65830" g_stop="65143" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E574280" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65830" e_stop="65143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACATATATTGGTTCAATGAACAAAAAGATCAGTTAAAAACTTACACAAAAGATGCAATTTGTTTGAACCCTTTTTCAAGTGCATACACAATTTCCACCACATTACATTTTACAACATGATTAAGCCACTAAAGA------TTC--TAAACAGGAGAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTT-ACCAGGAAAATCCTT-GCCTGAATCACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCACGAGATGGTCCGTGCAAAGCCCCCTCGACACAATCACCAGAATGGGCACAACCCCAAGGCTTGGATGGTCCTTCTTCACTGAATGGTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACAT-GGCGGCATGAAAGGACCCCAGCAACT-GGCATATC-TCCACTTCTCACAATTC</genome_strand>
        <mrna_strand>CCCACATATATTGGTTCAATGATC--AAAGATCAGTTAAAAACTTACACAAAAGATGCAATTTGTTTGAATCCTTTTT-AAGTGCATACACAATTTCCACCACATTACATTATACAACATGATTAAGCCACTAAAAATTCTAATTCAATAAACAGGAAAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTTCCCCGGGAAATTCCTTGGCCTGAATTACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCATGAGATGGTCCGTGCAAAGCCCCTTCGACACAATCTCCAGAATGAGCACAA-CCCAAGGCTTGGATGGTCCTTCTTCACTGAATGTTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACATGGGCGGCATGAAAGGACTCCAGCAACTGGGCATATCTTCCACTTCTCACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580372" ref_strand="+" ref_description="SGN-E580372 [5615]">
      <seq>cacaagcttaaaggccaaacaccccttacaatccctatttatatctccctaaatccctctcaattttccacatccaactcccatttttcacctcttcctttgcttagtcattacattctctcttgctagtcaaagctcactctccaaagaaacatgtcttattttgggatttgctttgttggtcttcttgcaatggtgtcatctgtttatggttatggtggtggaggttggattaatgctcatgcaactttctatgggggtggggatgcttctggaacaatgggtggggcttgtggatatgggaacctttatagtcaagggtatggtacaaatacagcagctttaagtactgctatgttcaacaatgggttgagctgtggttcttggttttgaattaagatgtgcaagtgatagacaagggtgtttgcctggttctattgtggttacagctacaaatttttgcccacaaaaatgcctccctaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83360" stop="84943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83660" g_stop="83807" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83808" i_stop="84211" i_length="404">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84212" g_stop="84346" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="283" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84347" i_stop="84438" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84439" g_stop="84643" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="486" r_length="203" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E580372" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83660" e_stop="83807"/>
          <exon e_start="84212" e_stop="84346"/>
          <exon e_start="84439" e_stop="84643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCTTAAAGGCCAAACACCCCTTAAAATCCCTATTTATATCCCCCTAAATCCCTCCCAATTTTCCACACCCAACTCCCA-TTTTCA-CTCTTCATTTGCTTAGTCACTACATTCCCTCTTGCTAGAGTCAAGGCTCACTCTCCAAAGTAAGAGTCTTTCTTCTCTTTTCTTGAAAATGCAACAATGAAACAACACAATTTTCAACATTTCTTGAATGTATATCTTAGAACATGCTAAAAAGTTGTAATCTTTATGCAAAAAAATAAACATAGTTGAAGAACACCATTTTCAAGATTTGTTAACATTCTTGAGTGTAATGCCAAAAAGTTGTAATCTTTATTCAGACAACATGGTTTAATTAACAGTTTTTCTACTTTGAAGAACACCATTTTCAAGATTTGTTAACATTCTTGAGTGTAATGCCAAAAAGTTGTAATCTTTATTCAGACAACATGGTTTAATTAACAGTTTTTCTACTTTGAAGAACACCATTTTCAAGATTTATTAACATTCTTGAGTGTAATGCTAAAAAGTTGTAATCTTTATGCAGGAAACATGGCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGGGTATGCAACATTTCCTTTAAATTCCCCAAAAGTTTGATTTTTGAGTAAATTTAGGGTATAAATTTGTGCTGATTCTTGATTTCTTTGAATAGGTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTT-GTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAA</genome_strand>
        <mrna_strand>CACAAGCTTAAAGGCCAAACACCCCTTACAATCCCTATTTATATCTCCCTAAATCCCTCTCAATTTTCCACATCCAACTCCCATTTTTCACCTCTTCCTTTGCTTAGTCATTACATTCTCTCTTGCT--AGTCAAAGCTCACTCTCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................GAAACATGTCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGTGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGGGGTGGGGATGCTTCTGGAACAATGG............................................................................................GTGGGGCTTGTGGATATGGGAACCTTTATAGTCAAGGGTATGGTACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGGTTTTGAATTAAGATGTGCAAGTGATAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACAGCTACAAATTTTTGCCCA-CAAA-AATG-CCTCCCTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744681" ref_strand="+" ref_description="SGN-E744681 [GI|30519753]">
      <seq>ggggtttatggttatggtggaggaggttggattgatgctcatgcaactttttatgggggtggtgatgcttctggaacaatgggtggggcttgtggatatgggaatctttatagtcaagggtatggcacaaatacagcagctttaagtactgctatgttcaacaatgggttgagctgtggttcttgttttgaattaaggtgtgtaaatgacagacaagggtgtttgcctggttctattgtggttactgctacaaatttttgcccaccaaacaatgccctccctaataatgcaggtggctggtgtaatcctccacttcaccattttgacctctctcagcctattttccaacacattgctcattacaaagctggaattgtccctgttgcttatagaagggtaccctgtagaagaaggggaggaataaggttcacaatcaatggacactcatacttcaacttagtactagtaacaaacgttggtggtggtggtgatgttcattcagtagctgttaaaggatcaagaacaggttggcagccaatgtcaagaaactggggacaaaactggcaaaacaacaacgaccttaatggacaaacactatcatttaaggttacaacaggtgatggtagaagtttgatctcatacaatgttgcacctgctcactggtcatttggacagacatatactggtgctcaattccactaaaaaaaggcattaaatggggttttttttttcttcaagtttttgaaagtatatttactagaattactattatcattactagtattagtatgcatactgatttggtcactagtattattgtgactatttagtatagaggtattttggttgtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttactttggggaccctaatttttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccncccccagttggtaggtgggggtatttttggcaactttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagaaccntttaactagtaatgattcagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacnggttncaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="83968" stop="86812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84265" g_stop="84346" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84347" i_stop="84438" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84439" g_stop="84751" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="395" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84752" i_stop="85628" i_length="877">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85629" g_stop="86509" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="1249" r_length="854" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1255" polyA_stop="1280"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E744681" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1276</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84265" e_stop="84346"/>
          <exon e_start="84439" e_stop="84751"/>
          <exon e_start="85629" e_stop="86509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGGGTATGCAACATTTCCTTTAAATTCCCCAAAAGTTTGATTTTTGAGTAAATTTAGGGTATAAATTTGTGCTGATTCTTGATTTCTTTGAATAGGTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAGGTAAATTCTTGGTAAAAATATGTTAGTTGTAGAACTATATGCTGTTTGTATCTTGCTATGTATGTATGATGTTGTTTGAGTACTATAAAAGAGTGGCAAGGAGAGTTTTGTCTTTTCACAAATGCTAAACCTTAGTCATGTCTAAATTGCTTAAGCCCAAAGGTTTGAAATTTCTAAATGGTCCCTTTTAAATGACCTTAATTTACTTGTGCATGCTAATAGAAAAATGAAATGGTGGAACCACATGGTGTGGACCCTTTTGATAAAGGTTTTAACTTTATCACAAGAAGTTTCCCATTTGGCTATTTTCAATGGAGTACTCTTTAGCATTTACTTCTTTCTTGGTTGTTGTAATAGTAGAAGATTCATAAAGTTACATATATTGTTCCCATTTGTCTCTTTACTTGTTTCAATTGTGCTCTTTATCCTTGACTTGTTTCTTAAATTTGGTAAAACTTGGAAAAGCATGAGAAACAAAGTTACAAACTTTAACACCATATAAAAACATAACATAACCAATCTTGCAAATTTTAATAGCTTAGTTTGTTGACAAGCCATACCTTTACCCTATGAACAATCTTGATAATCTTATTAGCTTAGTAAGTTGACTATCTGAAGTTTCACGTTTCGACAAATCTTGTTTATTTTAGTAGCTTAATTGTCTCACTATCTAGACTTTCATATTATACAACCAATCTTAGTTGTTAGAATACCTGAACTTTTTATGTTATGACTAATCTTGACAATCTCAGTAGCTCAATTGGTTGACTCCCTGAACTTTTCATGTTATAACTAATCTTGACAATCTTAGTAGCTTAGTTAGTTGACTATCTGAATTTCCATGTCTCAACTAATCTTTTGTCGAAATAAATTACAGGGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GGGGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG............................................................................................GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAACGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACGACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTA-T--TATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTAC-TTTGGGGACCCTAATTTTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCNCCCCCAGTTGGTA----------------------GGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCNTTTAACTAGTAATGATTC-AGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303220" ref_strand="+" ref_description="SGN-E303220 [cLEX-5-I11]">
      <seq>caacacattgctcattacaaagctggaattgtccctgttgcttatagaagggtaccctgtagaagaaggggaggaataaggttcacaatcaatggacactcatacttcaacttagtactagtaacaaatgttggtggtggtggtgatgttcattcagtagctgttaaaggatcaagaacaggttggcagccaatgtcaagaaactggggacaaaactggcaaaacaacaacaaccttaatggacaaacactatcatttaaggttacaacaggtgatggtagaagtttgatctcatacaatgttgcacctgctcactggtcatttggacagacatatactggtgctcaattccactaaaaaaaggcattaaatggggctttttttttcttcaagtttttgaaagtatatttactagaattactattatcattactagtattagtatgcatactgatttggtcactagtattagtattgtgactatttagtatacaggtattttggttgtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="84402" stop="86435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84702" g_stop="84751" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84752" i_stop="85628" i_length="877">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85629" g_stop="86135" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="557" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E303220" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84702" e_stop="84751"/>
          <exon e_start="85629" e_stop="86135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAGGTAAATTCTTGGTAAAAATATGTTAGTTGTAGAACTATATGCTGTTTGTATCTTGCTATGTATGTATGATGTTGTTTGAGTACTATAAAAGAGTGGCAAGGAGAGTTTTGTCTTTTCACAAATGCTAAACCTTAGTCATGTCTAAATTGCTTAAGCCCAAAGGTTTGAAATTTCTAAATGGTCCCTTTTAAATGACCTTAATTTACTTGTGCATGCTAATAGAAAAATGAAATGGTGGAACCACATGGTGTGGACCCTTTTGATAAAGGTTTTAACTTTATCACAAGAAGTTTCCCATTTGGCTATTTTCAATGGAGTACTCTTTAGCATTTACTTCTTTCTTGGTTGTTGTAATAGTAGAAGATTCATAAAGTTACATATATTGTTCCCATTTGTCTCTTTACTTGTTTCAATTGTGCTCTTTATCCTTGACTTGTTTCTTAAATTTGGTAAAACTTGGAAAAGCATGAGAAACAAAGTTACAAACTTTAACACCATATAAAAACATAACATAACCAATCTTGCAAATTTTAATAGCTTAGTTTGTTGACAAGCCATACCTTTACCCTATGAACAATCTTGATAATCTTATTAGCTTAGTAAGTTGACTATCTGAAGTTTCACGTTTCGACAAATCTTGTTTATTTTAGTAGCTTAATTGTCTCACTATCTAGACTTTCATATTATACAACCAATCTTAGTTGTTAGAATACCTGAACTTTTTATGTTATGACTAATCTTGACAATCTCAGTAGCTCAATTGGTTGACTCCCTGAACTTTTCATGTTATAACTAATCTTGACAATCTTAGTAGCTTAGTTAGTTGACTATCTGAATTTCCATGTCTCAACTAATCTTTTGTCGAAATAAATTACAGGGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTA</genome_strand>
        <mrna_strand>CAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGCTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATACAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317861" ref_strand="-" ref_description="SGN-E317861 [cTOA-30-B18]">
      <seq>gtaaaggtgtggtctttaaggtaaaaaaaaatgaaaaaagggcatattttaaaattgtcctctttttcattttgattgaattaagggtatcttacttttggggaccctaattcttgaggccacacttagtagttttttttggttttggagggtattttggtaatttttccttctgttaagggcagaagtggaaagcagtggtggacttttaccacccgcagttggtaggtgggggtgggggtggggtggggtgggggtatttttgggcctttttttttaagcttcagcctgtagctgaagatggactttgtatgtgtgagactatgaaatgtaaagacccatttaactagtaatgattcaagaagattatggttatgtattttaacttttgtaatgcctctctcggttttaatttgtttgacaaacaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85785" stop="86815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86085" g_stop="86509" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E317861" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86085" e_stop="86509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</genome_strand>
        <mrna_strand>GTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGG-GCCTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGACCCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461942" ref_strand="+" ref_description="SGN-E461942 [cPRO-10-G11]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttgtttccagtgttgagctaacattgaaccctaaaattgattacatgttgagtttgggattcgaacgcgatgatgtggttaatatggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="92123" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E461942" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="92123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGTTTCCAGTGTTGAGCTAACATTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTCGAACGCGATGATGTGGTTAATATGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465764" ref_strand="+" ref_description="SGN-E465764 [cPRO-22-M11]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttgtttccagtgttgagctaacattgaaccctaaaattgattacatgttgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="92087" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E465764" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="92087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGTTTCCAGTGTTGAGCTAACATTGAACCCTAAAATTGATTACATGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466012" ref_strand="+" ref_description="SGN-E466012 [cPRO-22-N14]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcaacaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactgttttgcttggttccagtgntgagctaacattgaaccctaaaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="92074" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E466012" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="92074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAACAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGTTTTGCTTGGTTCCAGTGNTGAGCTAACATTGAACCCTAAAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462819" ref_strand="+" ref_description="SGN-E462819 [cPRO-12-F12]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgtttgtagtgttgaagatcaattgaagcccacatttgagttcttgaaggaatttgggtttgtgggtcagaatcggattacttgtcaaactactggtttgcttgtttccagtgttgagctacattgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="92062" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E462819" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="92062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACC</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAGCCCACATTTGAGTTCTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGGATTACTTGTCAAACTACTGGTTTGCTTGTTTCCAGTGTTGAGCT-ACATTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430473" ref_strand="+" ref_description="SGN-E430473 [STM-53-B16]">
      <seq>atctttctcaataaaaaccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgttgtccgagaattcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="91936" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E430473" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="91936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTT</genome_strand>
        <mrna_strand>ATCTTTCTCAATAAAA-ACCA-ACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGTTGTCCGAGAATTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462119" ref_strand="+" ref_description="SGN-E462119 [cPRO-10-N13]">
      <seq>atctttctcaataaactccaacacaaagcatgtaaacagagtcctttcttcttcaatgtcacttcttctacctgagatgctaacatggataaaccctcccaaaaccctaatccccttttcttccatcaccccaaacccctcttctccatcacccatttgctcaatttctccaaaacccacaaaaacctcactcaaatcccttcacctctcccctcaacccactcttacttcaactgactgtggtctcaaattccgggagaaaatactctatcttcaagatctcaatatcaatcccacaaaagtccttcaactaaacccccatcttcgatcagcaacactcgattcaatcagatctgttgaaatatgtctgttttcaatgggaattgaacgttcggcaattggtcgaatacttgatatgcatccccagcttttaacctccgacccttatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91087" stop="92213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91387" g_stop="91913" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E462119" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91387" e_stop="91913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTAT</genome_strand>
        <mrna_strand>ATCTTTCTCAATA-AACTCC-AACACAAAGCATGTAAACAGAGTCCTTTCTTCTTCAATGTCACTTCTTCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCACCCCAAACCCCTCTTCTCCATCACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACCTCACTCAAATCCCTTCACCTCTCCCCTCAACCCACTCTTACTTCAACTGACTGTGGTCTCAAATTCCGGGAGAAAATACTCTATCTTCAAGATCTCAATATCAATCCCACAAAAGTCCTTCAACTAAACCCCCATCTTCGATCAGCAACACTCGATTCAATCAGATCTGTTGAAATATGTCTGTTTTCAATGGGAATTGAACGTTCGGCAATTGGTCGAATACTTGATATGCATCCCCAGCTTTTAACCTCCGACCCTTATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703862" ref_strand="+" ref_description="SGN-E703862 [FA22CG01]">
      <seq>ccttacttcaactgactgtggtctcaaattcagggagaaaatactctatcttcaagaactcaatatcaatcccagtaaagttcttcaactaaacccccatttacgatcagcaacgctcgattcaatcagatctgttgaagtatgtctgttttcaatggggattgaacggtcggcaattggtcgaatacttgatatgcatcctcagcttttaacctccgacccatatatccacctttacccaattttcgatttcttgttaaacgacgtcgttatccctttccatgacattcggaaatccattatccgatgtccgagaattcttgtttgtagtgttgaagatcaattgaaacccacatttgagtttttgaaggaatttgggtttgtgggtcagaatcgaattacttgtcagactactgttttgcttgtgtccagtgttgagctaactttgaaccctaaaattgattacatgttgagtttgggatttgaactcgatgatgtggctaatatggttttgagatcacctgggttgttgacatttagtattgagaaaaactttaggccaaaagttgagtattttttgaaggagatgaatggggatataagggaattgaagaggtttcctcagtacttttcgtttagtttggagaggaagattaagcctcggcataggcttttggtggagcatgggtttacgctgtctttatcggagatgttgaaggttagtgatggagaattcaatgccagattgatttgaatgcgattgaggttagtggatgataagcaaatgtagtacgtaattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91311" stop="92714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91611" g_stop="92414" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E703862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91611" e_stop="92414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</genome_strand>
        <mrna_strand>CCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTTGAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430474" ref_strand="+" ref_description="SGN-E430474 [STM-53-B16]">
      <seq>ctctaatgattctcaaacatatacaaaaatcgactctactcatagaaaagaattgcttacttactacaattgcttatcttccactatcctcaatcgcatttcaatcaatctggcattgaattcaccatcactaaccttcaacatctccgataaagatagcgaaaacccatgctccaccaaaagcctatgccgaggcttaatcttcctctccaaactaaacgaaaagtactgaggaaacctcttcaattcccctatatccccattcatctccttcaaaaaatactcaactttcggcctaaaatttttctcaatgctaaatgtcaacaacccaggtgacctcaaaaccatattaaccacatcatcgcgttcgaatcccaaactcaacatgtaatcaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="-" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="92763" stop="91764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92463" g_stop="92064" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="-" ref_id="SGN-E430474" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92463" e_stop="92064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATGAGTCTCCAACATAGAC-AAACTCGACTCTAACCATAGAAAAAGAGTTAATTACGTACTACATTTGCTTATCATCCACTAACCTCAATCGCATTTCAATCAATCTGGCATTGAATTCTCCATCACTAACCTTCAACATCTCCGATAAAGACAGCGTAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCTTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTTGGCCTAAAGTTTTTCTCAATACTAAATGTCAACAACCCAGGTGATCTCAAAACCATATTAGCCACATCATCGAGTTCAAATCCCAAACTCAACATGTAATCAATTTTA</genome_strand>
        <mrna_strand>CTCTAATGATTCTCAAACATATACAAAAATCGACTCTACTCATAG-AAAAGAATTGCTTACTTACTACAATTGCTTATCTTCCACTATCCTCAATCGCATTTCAATCAATCTGGCATTGAATTCACCATCACTAACCTTCAACATCTCCGATAAAGATAGCGAAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCCTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTCGGCCTAAAATTTTTCTCAATGCTAAATGTCAACAACCCAGGTGACCTCAAAACCATATTAACCACATCATCGCGTTCGAATCCCAAACTCAACATGTAATCAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468080" ref_strand="+" ref_description="SGN-E468080 [cSTB-2-M22]">
      <seq>ggagattcaattccgaaagaactcttgagagcctatcgaagagtctcaagttgcaccttattgtcttctcaaagaattatgctaccatctaggtggtgcttgaatgaactagtgaagatcatggaatgcaaagatgaagaaaatggacaaacagtcatacccaatcttctatgatgtggatccatcacatgttcgaaaccaaagtgaaagcctttggagcagcatttgccgaaccatgaattaaagtataaggatgatgttgaggggatgccaaaaggtgccaaagatggagaaatgccctaactgttgccgcaaatctaaaaggatatgatatccctgacgggattgaatcagagaatattcaacagatcgtagactgcatctcttccaagtttcgcacaaatgcttattctttatcttttttgcaagatgttgtgggaataaacgatcacttagagaaactaaaatccaaacttcaaatggaaatcaacgatgttcggattttagggatctggggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="94420" stop="95806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94720" g_stop="95054" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95055" i_stop="95328" i_length="274">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95329" g_stop="95506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="521" r_length="178" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E468080" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94720" e_stop="95054"/>
          <exon e_start="95329" e_stop="95506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTCAATTCCAAAAGAACTCTTGAGAG-CTATAGAAGATTCTCAAGTTGCA-CTTATCATTTTCTCAAAGAATTATGCTA-CATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGAGGAAGAAAATGGACAAACAGTCATA-CCGATCTTTTATAATGTGGATCCATCACATGTTCGATACCAAACTGAAAG-CTTTGGAGCAGCATTTGCC-AAACACGAATCAAAGTATAAGGATGATGTTGAGGGGATG-CAGAAGGTG-CAAAGATGGAGAACTGCCCTAACTGCTGCCGCAAATCTAAAAGGATATGATATCCGTAACGGGTTAGTTGAATACACATAATTACTTTTAATGTTTTTACTGTTAAAAAGGCATAGTCCAATCAATTTAATTAGAGAAGATACATAAAAGTCCAAAAAACTATTCAAGTTTTGCAACTTCCATACTTGAAAACTATAGAGTATTGTTATTACCTGAACTATTCTATTTCCTATTTAATACCCTGCTGATTATTAACAATATATATAGAGTATATGAAATACTTGTTGGTATTTGACTTTCTTACATTGTCCACAATCAATTTTCTTCTTTATGTAGGATTGAATCAGAGAATATTCAGCAGATCGTAGATTGCATCTCTTCCAAATTTTGTACGAATGCTTATTCTTTATCTTTTTTGCAAGATATTGTGGGAATAAATGCTCACTTAGAGAAACTAAAATCGAAACTTCAAATAGAAATCAATGATGTTCGGATTTTAGGGATCTGGGGAATA</genome_strand>
        <mrna_strand>GGAGATTCAATTCCGAAAGAACTCTTGAGAGCCTATCGAAGAGTCTCAAGTTGCACCTTATTGTCTTCTCAAAGAATTATGCTACCATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGATGAAGAAAATGGACAAACAGTCATACCCAATCTTCTATGATGTGGATCCATCACATGTTCGAAACCAAAGTGAAAGCCTTTGGAGCAGCATTTGCCGAACCATGAATTAAAGTATAAGGATGATGTTGAGGGGATGCCAAAAGGTGCCAAAGATGGAGAAATGCCCTAACTGTTGCCGCAAATCTAAAAGGATATGATATCCCTGACGG..................................................................................................................................................................................................................................................................................GATTGAATCAGAGAATATTCAACAGATCGTAGACTGCATCTCTTCCAAGTTTCGCACAAATGCTTATTCTTTATCTTTTTTGCAAGATGTTGTGGGAATAAACGATCACTTAGAGAAACTAAAATCCAAACTTCAAATGGAAATCAACGATGTTCGGATTTTAGGGATCTGGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468081" ref_strand="-" ref_description="SGN-E468081 [cSTB-2-M22]">
      <seq>atcatgaagctatgcaattattcaataagcatgcttttaaaaaagaagatccagatgagagttttaagaagttctcattggaggtagtaaatcacgctaaaggccttcctttagccctcaaggtgtggggttctttattgcataaaaagtgtctaactttgtggagaaaaactgtagagcagataaagaaaaactctaattcagaaattgttaaaaaactcaaaataagttatgatgggttggagctcgaagagcaagagatatttctagatattgcatgtttattccgtggaaaaaaaagaaaagaagtcatgcaaattcttgagagttgtgactttggagctgaatacggattgaatgttctgattaataaatctcttgtgttcatctctgaaaataatatgattgaaatggcatgatttgattagagatatgggtagatatgtggtgaaaatgcaaaagcttccgaaaaaacgtagcagaatatgggatgttgaagatttcaaaaaagtgatgatagactatacagtaagtaagctaaacaatgcaataatatttaatttctaatttttatatttcaaagacgtataagccaatcaattccaattacttgttcctcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0084G04-c5xmL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0084G04.1" temp_strand="+" temp_description="C05SLm0084G04.1  AC232763.1 htgs_phase:3 submitted_to_sgn_as:C05SLm0084G04 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95592" stop="96798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95892" g_stop="96490" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="632"/>
      <MATCH_line gen_id="C05SLm0084G04.1" gen_strand="+" ref_id="SGN-E468081" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0084G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95892" e_stop="96490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAAGCTATGCAATTATTCAATATGCATGCTTTTAAAAAAGAAGTTCCAAATGAGGATTTTAAGGAGTTGGCGTTAGAGATAGTAAATCACGCTAAAGGCCTCCCTTTAGCCCTCAAGGTGTGGGGCTGTTTATTGCATAAAAAAAATCTCTCTTTATGGAAAATAACAGTAGAGCAAATAAAGAAAGACTCTAATTCAGAAATTGTTGAACAACTCAAAATAAGTTATGATGGGTTGGAGTCCGAAGAGCAGGAAATATTTTTAGATATAGCATGTTTCTTCCGCGGAGAGAAAAGAAAAGAGGTCATGCAAATTCTTAAGAGTTGTGACTTTGGAGCTGAATACGGATTGGATGTTCTGATTAATAAATCTCTTGTGTTCATATCTGAAAATGACAGGATTGAAAT-GCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCAGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAGAAGTGATGATAGACTATACGGTAAGTAAGCTTAACAATGCAATGATATTTAATTTCTAATTTTTATATTCCAAGGAACTTATAGGCTAATCA</genome_strand>
        <mrna_strand>ATCATGAAGCTATGCAATTATTCAATAAGCATGCTTTTAAAAAAGAAGATCCAGATGAGAGTTTTAAGAAGTTCTCATTGGAGGTAGTAAATCACGCTAAAGGCCTTCCTTTAGCCCTCAAGGTGTGGGGTTCTTTATTGCATAAAAAGTGTCTAACTTTGTGGAGAAAAACTGTAGAGCAGATAAAGAAAAACTCTAATTCAGAAATTGTTAAAAAACTCAAAATAAGTTATGATGGGTTGGAGCTCGAAGAGCAAGAGATATTTCTAGATATTGCATGTTTATTCCGTGGAAAAAAAAGAAAAGAAGTCATGCAAATTCTTGAGAGTTGTGACTTTGGAGCTGAATACGGATTGAATGTTCTGATTAATAAATCTCTTGTGTTCATCTCTGAAAATAATATGATTGAAATGGCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCCGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAAAAGTGATGATAGACTATACAGTAAGTAAGCTAAACAATGCAATAATATTTAATTTCTAATTTTTATATTTCAAAG-ACGTATAAGCCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>170</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="623" PGL_stop="149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="623" e_stop="414"/>
            <exon e_start="223" e_stop="149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="0.957"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="623" e_stop="414" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="413" i_stop="224" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="223" e_stop="149" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="623" stop="414"/>
              <exon start="223" stop="149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281463" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTCCCAAAAGGATAGACACAACTAATAACTTCTTATTGAAATTTTGCTAATATTATCTCAAATTTAGAGCTATATATACAATATGGGAAGGTTTGATAAAGAGGGATTGAAAAAAGGGCCATGGACTCCAGAAGAAGACCAAAAACTTTTGTCTTTCATTGATACATATGGTTGTGGTAGTTGGAGGGCTTTGCCTGCTAAAGCTG : GTTTACAAAGATGTGGAAAGAGTTGTAGGCTAAGATGGATAAACTATCTTAGGCCTGATATTAAGAGAGGAAAAT</gDNA_template>
            <first_frame> S  F  P  K  R  I  D  T  T  N  N  F  L  L  K  F  C  *  Y  Y  L  K  F  R  A  I  Y  T  I  W  E  G  L  I  K  R  D  *  K  K  G  H  G  L  Q  K  K  T  K  N  F  C  L  S  L  I  H  M  V  V  V  V  G  G  L  C  L  L  K  L  :  V  Y  K  D  V  E  R  V  V  G  *  D  G  *  T  I  L  G  L  I  L  R  E  E  N </first_frame>
            <second_frame>  H  F  P  K  G  *  T  Q  L  I  T  S  Y  *  N  F  A  N  I  I  S  N  L  E  L  Y  I  Q  Y  G  K  V  *  *  R  G  I  E  K  R  A  M  D  S  R  R  R  P  K  T  F  V  F  H  *  Y  I  W  L  W  *  L  E  G  F  A  C  *  S  W :   F  T  K  M  W  K  E  L  *  A  K  M  D  K  L  S  *  A  *  Y  *  E  R  K   </second_frame>
            <third_frame>   I  S  Q  K  D  R  H  N  *  *  L  L  I  E  I  L  L  I  L  S  Q  I  *  S  Y  I  Y  N  M  G  R  F  D  K  E  G  L  K  K  G  P  W  T  P  E  E  D  Q  K  L  L  S  F  I  D  T  Y  G  C  G  S  W  R  A  L  P  A  K  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  I  N  Y  L  R  P  D  I  K  R  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="552" stop="414"/>
                    <exon start="223" stop="150"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYIYNMGRFDKEGLKKGPWTPEEDQKLLSFIDTYGCGSWRALPAKAGLQRCGKSCRLRWINYLRPDIKRGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10682" PGL_stop="7909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10682" e_stop="10221"/>
            <exon e_start="8854" e_stop="7969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.937"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="10682" e_stop="10221" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8854" e_stop="7969" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10682" stop="10221"/>
              <exon start="8854" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10682" stop="10221"/>
              <exon start="8854" stop="8604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10611" stop="10221"/>
              <exon start="8854" stop="8476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10592" stop="10221"/>
              <exon start="8854" stop="8630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10586" stop="10221"/>
              <exon start="8854" stop="8492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10583" stop="10221"/>
              <exon start="8854" stop="8625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8690" stop="8015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8330" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8253" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</gDNA_template>
            <first_frame> Q  E  L  K  M  G  P  A  S  K  I  *  V  Y  M  V  Y  N  T  D  A  S  E  A  W  T  T  S  S  M  K  A  Q  E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K  G  S  I  F  K  F  C  S  L  *  L  I  L  S  Y  I  Y  V  V  S  *  C  V  L  R  S  Q  V  C  F  F  T  P  F  C  R  N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  </first_frame>
            <second_frame>  K  S  *  R  W  A  R  L  Q  R  F  K  C  I  W  S  I  T  L  M  P  L  R  P  G  P  L  A  Q  *  K  P  K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  R :   L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  V  R  F  S  N  F  V  P  F  D  *  S  *  V  I  S  M  L  Y  L  S  V  C  *  E  A  K  C  A  S  L  L  P  F  V  G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K </second_frame>
            <third_frame>   R  V  E  D  G  P  G  F  K  D  L  S  V  Y  G  L  *  H  *  C  L  *  G  L  D  H  *  L  N  E  S  P  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R  F  D  F  Q  I  L  F  P  L  I  D  L  E  L  Y  L  C  C  I  L  V  C  V  E  K  P  S  V  L  L  Y  S  L  L  *  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10646" stop="10221"/>
                    <exon start="8854" stop="8312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYMVYNTDASEAWTTSSMKAQEFNDGRRAHTTKLAVTAMSATAAETATFPVDLIKTRLQLHGESLVSSRRTSAVRVVAEILRNDGVLGLYKGLSPAIIRHMFYTPIRIVNYEFLRNFLVPADHTLSLSSKAIIGGISGVIAQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10682" e_stop="10221"/>
            <exon e_start="8854" e_stop="8269"/>
            <exon e_start="8162" e_stop="7909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.937"/>
          <exon-intron don_prob="0.995" acc_prob="0.946" e_score="0.945"/>
          <exon-only e_score="0.823"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="10682" e_stop="10221" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10220" i_stop="8855" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="8854" e_stop="8269" e_length="586"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.946">
            <gDNA_intron_boundary i_start="8268" i_stop="8163" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.823">
            <gDNA_exon_boundary e_start="8162" e_stop="7909" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10682" stop="10221"/>
              <exon start="8854" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10682" stop="10221"/>
              <exon start="8854" stop="8604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10611" stop="10221"/>
              <exon start="8854" stop="8476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10592" stop="10221"/>
              <exon start="8854" stop="8630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10586" stop="10221"/>
              <exon start="8854" stop="8492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10583" stop="10221"/>
              <exon start="8854" stop="8625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8847" stop="8269"/>
              <exon start="8162" stop="7909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423137" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAGTTGAAGATGGGCCCGGCTTCAAAGATTTAAGTGTATATGGTCTATAACACTGATGCCTCTGAGGCCTGGACCACTAGCTCAATGAAAGCCCAAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : GTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAG : GAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAAGGATTTGTTTTTCTTGTGATTATGATCAATGTAGAAAGACTTTGATAATATTATATATAT</gDNA_template>
            <first_frame> Q  E  L  K  M  G  P  A  S  K  I  *  V  Y  M  V  Y  N  T  D  A  S  E  A  W  T  T  S  S  M  K  A  Q  E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K   : G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K  G  F  V  F  L  V  I  M  I  N  V  E  R  L  *  *  Y  Y  I  Y </first_frame>
            <second_frame>  K  S  *  R  W  A  R  L  Q  R  F  K  C  I  W  S  I  T  L  M  P  L  R  P  G  P  L  A  Q  *  K  P  K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  R :   L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  :  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q  K  D  L  F  F  L  *  L  *  S  M  *  K  D  F  D  N  I  I  Y   </second_frame>
            <third_frame>   R  V  E  D  G  P  G  F  K  D  L  S  V  Y  G  L  *  H  *  C  L  *  G  L  D  H  *  L  N  E  S  P  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R :   N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  R  I  C  F  S  C  D  Y  D  Q  C  R  K  T  L  I  I  L  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10646" stop="10221"/>
                    <exon start="8854" stop="8312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYMVYNTDASEAWTTSSMKAQEFNDGRRAHTTKLAVTAMSATAAETATFPVDLIKTRLQLHGESLVSSRRTSAVRVVAEILRNDGVLGLYKGLSPAIIRHMFYTPIRIVNYEFLRNFLVPADHTLSLSSKAIIGGISGVIAQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="10585" e_stop="10221"/>
            <exon e_start="8877" e_stop="7969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10585" e_stop="10221" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10220" i_stop="8878" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8877" e_stop="7969" e_length="909"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10585" stop="10221"/>
              <exon start="8877" stop="8542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8690" stop="8015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8330" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8253" stop="7969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTTTAACGATGGCCGGAGAGCCCATACAACAAAGTTAGCAGTGACGGCGATGTCGGCAACGGCGGCGGAAACGGCGACGTTTCCGGTTGACCTCATCAAGACGAGGCTTCAACTCCACGGCGAATCTCTTGTTTCGTCTCGACGGACATCAGCCGTCCGAGTAGTGGCGGAGATCTTACGAAACGACGGCGTTTTAGGACTATACAAGGGATTGTCACCGGCGATTATAAGGCATATGTTTTACACTCCAATTCGAATCGTAAACTATGAGTTTTTGAGGAATTTTTTGGTTCCTGCTGATCATACACTTTCTCTGTCAAGCAAAGCTATTATTGGTGGAATATCTGGAGTTATTGCTCAG : TTGCATTACTTCTTGTGATTCAGGTTGTGGCAAGCCCAGCTGATCTTGTCAAAGTTAGGATGCAAGCAGACAGTAGAATAGCAAGCCAGGGTCTACAACCTCGATATTGCGGGCCATTTGATGCCTTCAACAAGATTATTCAGACTGAAGGCGTCAGGGGACTTTGGAAAGGCGTGCTCCCAAATGTCCAGAGAGCATTTTTAGTTAACATGGGAGAGCTAGCGTGCTATGATCATGCAAAACGCTTTGTGATCAATAACAACATAGCAAATGATAATATATATGCACACACGTTATCATCTATAATGTCAGGCCTGTCAGCCACTACATTGAGCTGTCCAGCAGATGTAATTAAGACAAGAATGATGAATCAGGCTGCCGATAAGCAAGGGAATTGCAAGTATAGAAACTCCTACGATTGTCTTGTCAAAACGGTCAGAGTTGAAGGACTCAAAGCATTGTGGAAGGGATTCTTTCCTACATGGGCTAGGCTTGGCCCTTGGCAATTTGTATTCTGGGTATCATATGAGAAATTCCGACAAATTGCTGGTCTCTCTTCATTCTAAACAATTCATCACGCTGAGTGCTGTATAACACAGTGAAGCAAAGGTTCGATTTTCAAATTTTGTTCCCTTTGATTGATCTTGAGTTATATCTATGTTGTATCTTAGTGTGTGTTGAGAAGCCAAGTGTGCTTCTTTACTCCCTTTTGTAGGAATACTTGGGTAGACAGAGTCTTCTACTTGGAATTATTCATCATAGGCGTTAGTTAGTTAAAGAATGTATTCTACGGGCCGAATTCTGTTTCAGACAAGAAACTCTATTTAAGTGGAAAAGGACATAGAGACGAATTCATTATCTAACTCATTATCTATCGAATAACGAACTCATCGAGATTTCTATCCAAAA</gDNA_template>
            <first_frame> K  S  L  T  M  A  G  E  P  I  Q  Q  S  *  Q  *  R  R  C  R  Q  R  R  R  K  R  R  R  F  R  L  T  S  S  R  R  G  F  N  S  T  A  N  L  L  F  R  L  D  G  H  Q  P  S  E  *  W  R  R  S  Y  E  T  T  A  F  *  D  Y  T  R  D  C  H  R  R  L  *  G  I  C  F  T  L  Q  F  E  S  *  T  M  S  F  *  G  I  F  W  F  L  L  I  I  H  F  L  C  Q  A  K  L  L  L  V  E  Y  L  E  L  L  L  S :   C  I  T  S  C  D  S  G  C  G  K  P  S  *  S  C  Q  S  *  D  A  S  R  Q  *  N  S  K  P  G  S  T  T  S  I  L  R  A  I  *  C  L  Q  Q  D  Y  S  D  *  R  R  Q  G  T  L  E  R  R  A  P  K  C  P  E  S  I  F  S  *  H  G  R  A  S  V  L  *  S  C  K  T  L  C  D  Q  *  Q  H  S  K  *  *  Y  I  C  T  H  V  I  I  Y  N  V  R  P  V  S  H  Y  I  E  L  S  S  R  C  N  *  D  K  N  D  E  S  G  C  R  *  A  R  E  L  Q  V  *  K  L  L  R  L  S  C  Q  N  G  Q  S  *  R  T  Q  S  I  V  E  G  I  L  S  Y  M  G  *  A  W  P  L  A  I  C  I  L  G  I  I  *  E  I  P  T  N  C  W  S  L  F  I  L  N  N  S  S  R  *  V  L  Y  N  T  V  K  Q  R  F  D  F  Q  I  L  F  P  L  I  D  L  E  L  Y  L  C  C  I  L  V  C  V  E  K  P  S  V  L  L  Y  S  L  L  *  E  Y  L  G  R  Q  S  L  L  L  G  I  I  H  H  R  R  *  L  V  K  E  C  I  L  R  A  E  F  C  F  R  Q  E  T  L  F  K  W  K  R  T  *  R  R  I  H  Y  L  T  H  Y  L  S  N  N  E  L  I  E  I  S  I  Q   </first_frame>
            <second_frame>  R  V  *  R  W  P  E  S  P  Y  N  K  V  S  S  D  G  D  V  G  N  G  G  G  N  G  D  V  S  G  *  P  H  Q  D  E  A  S  T  P  R  R  I  S  C  F  V  S  T  D  I  S  R  P  S  S  G  G  D  L  T  K  R  R  R  F  R  T  I  Q  G  I  V  T  G  D  Y  K  A  Y  V  L  H  S  N  S  N  R  K  L  *  V  F  E  E  F  F  G  S  C  *  S  Y  T  F  S  V  K  Q  S  Y  Y  W  W  N  I  W  S  Y  C  S   : V  A  L  L  L  V  I  Q  V  V  A  S  P  A  D  L  V  K  V  R  M  Q  A  D  S  R  I  A  S  Q  G  L  Q  P  R  Y  C  G  P  F  D  A  F  N  K  I  I  Q  T  E  G  V  R  G  L  W  K  G  V  L  P  N  V  Q  R  A  F  L  V  N  M  G  E  L  A  C  Y  D  H  A  K  R  F  V  I  N  N  N  I  A  N  D  N  I  Y  A  H  T  L  S  S  I  M  S  G  L  S  A  T  T  L  S  C  P  A  D  V  I  K  T  R  M  M  N  Q  A  A  D  K  Q  G  N  C  K  Y  R  N  S  Y  D  C  L  V  K  T  V  R  V  E  G  L  K  A  L  W  K  G  F  F  P  T  W  A  R  L  G  P  W  Q  F  V  F  W  V  S  Y  E  K  F  R  Q  I  A  G  L  S  S  F  *  T  I  H  H  A  E  C  C  I  T  Q  *  S  K  G  S  I  F  K  F  C  S  L  *  L  I  L  S  Y  I  Y  V  V  S  *  C  V  L  R  S  Q  V  C  F  F  T  P  F  C  R  N  T  W  V  D  R  V  F  Y  L  E  L  F  I  I  G  V  S  *  L  K  N  V  F  Y  G  P  N  S  V  S  D  K  K  L  Y  L  S  G  K  G  H  R  D  E  F  I  I  *  L  I  I  Y  R  I  T  N  S  S  R  F  L  S  K  </second_frame>
            <third_frame>   E  F  N  D  G  R  R  A  H  T  T  K  L  A  V  T  A  M  S  A  T  A  A  E  T  A  T  F  P  V  D  L  I  K  T  R  L  Q  L  H  G  E  S  L  V  S  S  R  R  T  S  A  V  R  V  V  A  E  I  L  R  N  D  G  V  L  G  L  Y  K  G  L  S  P  A  I  I  R  H  M  F  Y  T  P  I  R  I  V  N  Y  E  F  L  R  N  F  L  V  P  A  D  H  T  L  S  L  S  S  K  A  I  I  G  G  I  S  G  V  I  A  Q  :  L  H  Y  F  L  *  F  R  L  W  Q  A  Q  L  I  L  S  K  L  G  C  K  Q  T  V  E  *  Q  A  R  V  Y  N  L  D  I  A  G  H  L  M  P  S  T  R  L  F  R  L  K  A  S  G  D  F  G  K  A  C  S  Q  M  S  R  E  H  F  *  L  T  W  E  S  *  R  A  M  I  M  Q  N  A  L  *  S  I  T  T  *  Q  M  I  I  Y  M  H  T  R  Y  H  L  *  C  Q  A  C  Q  P  L  H  *  A  V  Q  Q  M  *  L  R  Q  E  *  *  I  R  L  P  I  S  K  G  I  A  S  I  E  T  P  T  I  V  L  S  K  R  S  E  L  K  D  S  K  H  C  G  R  D  S  F  L  H  G  L  G  L  A  L  G  N  L  Y  S  G  Y  H  M  R  N  S  D  K  L  L  V  S  L  H  S  K  Q  F  I  T  L  S  A  V  *  H  S  E  A  K  V  R  F  S  N  F  V  P  F  D  *  S  *  V  I  S  M  L  Y  L  S  V  C  *  E  A  K  C  A  S  L  L  P  F  V  G  I  L  G  *  T  E  S  S  T  W  N  Y  S  S  *  A  L  V  S  *  R  M  Y  S  T  G  R  I  L  F  Q  T  R  N  S  I  *  V  E  K  D  I  E  T  N  S  L  S  N  S  L  S  I  E  *  R  T  H  R  D  F  Y  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10281" stop="10221"/>
                    <exon start="8877" stop="8312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYTFSVKQSYYWWNIWSYCSVALLLVIQVVASPADLVKVRMQADSRIASQGLQPRYCGPFDAFNKIIQTEGVRGLWKGVLPNVQRAFLVNMGELACYDHAKRFVINNNIANDNIYAHTLSSIMSGLSATTLSCPADVIKTRMMNQAADKQGNCKYRNSYDCLVKTVRVEGLKALWKGFFPTWARLGPWQFVFWVSYEKFRQIAGLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11569" PGL_stop="12429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11569" e_stop="12429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="11569" e_stop="12429" e_length="861"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11569" stop="12046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11572" stop="12321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11577" stop="12429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAAGCAGTCGGAAACACCATTGCTCCGCCGCAGCGCCGCCTTTTTCTGTTGCGTAAGCTCATCAAATAATCGCCAAAAAGATGTATAGAAGTAGAGCCACCATACTGACATCCAAATCATTGAGAACTCTATCAAAGGTAAGCAGACAATCTCTTCATTTAGAATCGTTAAAGTTCGTTAATTTTTTAAGAAATACCAGTACTGCTACTCAAATATCTGAGATTGATAATTATAGTGAGTCAAAGGGGGGAAATAACAGTGATTTTCAGCAAAACCCAGATGGGGATTTGAATTATAACTCGAACAATACGGGTTCTTTGAATAAATTAAACTGGAAGGATCAGGAATGGGCGTATAATCAGCAGTTATCTCGTAGCACGCAAGGCGGCGGGAGTTATAGTGGAAATTCTAGGAGAATAGAGCAGAACCCTAGTGAGGTTTATGAGCAAAAAACTAGAACTGAATTTCAAGAATTAAAGGATACCAAAGGGTTTCAGCAGAACCCACATGCGAAAAATGAGAACTTTTCATCTGGGTATGTTAATGTTTCATCTAGAAATGAATTTCAGCAAACAGTTGGGAGAAACAATGATTTCGGGTCTCGAAAGGATTATCAAAGTGATTTAGTTCATAATAGAAATGATCGTAGTTCCAGGTTTGAGGGAGGTTTAGAAGCTCAGTCGAGTCAAAATGGAGTATATGGACACTATCAACAGAATTTAAATGGGGGAAACAGTGTAACGTCACAGCAGAATTTCAATGGCAATTACATGAGAAACGTTGGAATGCCTCAGCAAAACATTTCCAATTATGACCCTGGAAATGTAAGGAATGTTCAATCTGAGTATCCACAAAATG</gDNA_template>
            <first_frame> V  *  A  V  G  N  T  I  A  P  P  Q  R  R  L  F  L  L  R  K  L  I  K  *  S  P  K  R  C  I  E  V  E  P  P  Y  *  H  P  N  H  *  E  L  Y  Q  R  *  A  D  N  L  F  I  *  N  R  *  S  S  L  I  F  *  E  I  P  V  L  L  L  K  Y  L  R  L  I  I  I  V  S  Q  R  G  E  I  T  V  I  F  S  K  T  Q  M  G  I  *  I  I  T  R  T  I  R  V  L  *  I  N  *  T  G  R  I  R  N  G  R  I  I  S  S  Y  L  V  A  R  K  A  A  G  V  I  V  E  I  L  G  E  *  S  R  T  L  V  R  F  M  S  K  K  L  E  L  N  F  K  N  *  R  I  P  K  G  F  S  R  T  H  M  R  K  M  R  T  F  H  L  G  M  L  M  F  H  L  E  M  N  F  S  K  Q  L  G  E  T  M  I  S  G  L  E  R  I  I  K  V  I  *  F  I  I  E  M  I  V  V  P  G  L  R  E  V  *  K  L  S  R  V  K  M  E  Y  M  D  T  I  N  R  I  *  M  G  E  T  V  *  R  H  S  R  I  S  M  A  I  T  *  E  T  L  E  C  L  S  K  T  F  P  I  M  T  L  E  M  *  G  M  F  N  L  S  I  H  K  M </first_frame>
            <second_frame>  F  K  Q  S  E  T  P  L  L  R  R  S  A  A  F  F  C  C  V  S  S  S  N  N  R  Q  K  D  V  *  K  *  S  H  H  T  D  I  Q  I  I  E  N  S  I  K  G  K  Q  T  I  S  S  F  R  I  V  K  V  R  *  F  F  K  K  Y  Q  Y  C  Y  S  N  I  *  D  *  *  L  *  *  V  K  G  G  K  *  Q  *  F  S  A  K  P  R  W  G  F  E  L  *  L  E  Q  Y  G  F  F  E  *  I  K  L  E  G  S  G  M  G  V  *  S  A  V  I  S  *  H  A  R  R  R  E  L  *  W  K  F  *  E  N  R  A  E  P  *  *  G  L  *  A  K  N  *  N  *  I  S  R  I  K  G  Y  Q  R  V  S  A  E  P  T  C  E  K  *  E  L  F  I  W  V  C  *  C  F  I  *  K  *  I  S  A  N  S  W  E  K  Q  *  F  R  V  S  K  G  L  S  K  *  F  S  S  *  *  K  *  S  *  F  Q  V  *  G  R  F  R  S  S  V  E  S  K  W  S  I  W  T  L  S  T  E  F  K  W  G  K  Q  C  N  V  T  A  E  F  Q  W  Q  L  H  E  K  R  W  N  A  S  A  K  H  F  Q  L  *  P  W  K  C  K  E  C  S  I  *  V  S  T  K   </second_frame>
            <third_frame>   L  S  S  R  K  H  H  C  S  A  A  A  P  P  F  S  V  A  *  A  H  Q  I  I  A  K  K  M  Y  R  S  R  A  T  I  L  T  S  K  S  L  R  T  L  S  K  V  S  R  Q  S  L  H  L  E  S  L  K  F  V  N  F  L  R  N  T  S  T  A  T  Q  I  S  E  I  D  N  Y  S  E  S  K  G  G  N  N  S  D  F  Q  Q  N  P  D  G  D  L  N  Y  N  S  N  N  T  G  S  L  N  K  L  N  W  K  D  Q  E  W  A  Y  N  Q  Q  L  S  R  S  T  Q  G  G  G  S  Y  S  G  N  S  R  R  I  E  Q  N  P  S  E  V  Y  E  Q  K  T  R  T  E  F  Q  E  L  K  D  T  K  G  F  Q  Q  N  P  H  A  K  N  E  N  F  S  S  G  Y  V  N  V  S  S  R  N  E  F  Q  Q  T  V  G  R  N  N  D  F  G  S  R  K  D  Y  Q  S  D  L  V  H  N  R  N  D  R  S  S  R  F  E  G  G  L  E  A  Q  S  S  Q  N  G  V  Y  G  H  Y  Q  Q  N  L  N  G  G  N  S  V  T  S  Q  Q  N  F  N  G  N  Y  M  R  N  V  G  M  P  Q  Q  N  I  S  N  Y  D  P  G  N  V  R  N  V  Q  S  E  Y  P  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11628" stop="12428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHQIIAKKMYRSRATILTSKSLRTLSKVSRQSLHLESLKFVNFLRNTSTATQISEIDNYSESKGGNNSDFQQNPDGDLNYNSNNTGSLNKLNWKDQEWAYNQQLSRSTQGGGSYSGNSRRIEQNPSEVYEQKTRTEFQELKDTKGFQQNPHAKNENFSSGYVNVSSRNEFQQTVGRNNDFGSRKDYQSDLVHNRNDRSSRFEGGLEAQSSQNGVYGHYQQNLNGGNSVTSQQNFNGNYMRNVGMPQQNISNYDPGNVRNVQSEYPQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13324" PGL_stop="13880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13324" e_stop="13880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13324" e_stop="13880" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13324" stop="13880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGTTGAGCTCCTGGACCCATGTCGTTTGGATGAACAGTCAAAGGCAGGTTTTTTGGCTGTAAAAGCATCAGACATCGCTACGGAGAAAGAGAAGAAGAAATCTGCTCAAAGTCTTCTTGAGGCTAGAAGCAAAGTTCATGAATATCGTGCGGGAGATAGGTCACATCCCGATCATGAGAAGATATATGCATTGCTTAGGGGTTTAAAGCAGCTAATGAAGGAGGACGGTTATATACCAGAGACGAAGTTTGTGTTACATGATGTAGACCAAGAAACTAAAGAGGACGCTTTAATGGCTCACAGCGAGAGATTGGCTTTTGCTCAAGGTCTTATGAATAGCTCTGCACGATCACCAATCCGGATTATAAAGAATCTGCGTGTCTGTGGTGATTGCCATAATGCATTAAAGATTGCTTCAAGGCTTGTCGGTCGGGAAATTATCATGCGAGATGCTAAAAGATTTCATCATTTAAAAGATGGATTGTGCTCGTGTAAGGATTATTGGTGAAGATCCTGACCTTCAGGTAATACTTAGTATATTACTTTTTTTATT</gDNA_template>
            <first_frame> R  L  L  S  S  W  T  H  V  V  W  M  N  S  Q  R  Q  V  F  W  L  *  K  H  Q  T  S  L  R  R  K  R  R  R  N  L  L  K  V  F  L  R  L  E  A  K  F  M  N  I  V  R  E  I  G  H  I  P  I  M  R  R  Y  M  H  C  L  G  V  *  S  S  *  *  R  R  T  V  I  Y  Q  R  R  S  L  C  Y  M  M  *  T  K  K  L  K  R  T  L  *  W  L  T  A  R  D  W  L  L  L  K  V  L  *  I  A  L  H  D  H  Q  S  G  L  *  R  I  C  V  S  V  V  I  A  I  M  H  *  R  L  L  Q  G  L  S  V  G  K  L  S  C  E  M  L  K  D  F  I  I  *  K  M  D  C  A  R  V  R  I  I  G  E  D  P  D  L  Q  V  I  L  S  I  L  L  F  L   </first_frame>
            <second_frame>  D  C  *  A  P  G  P  M  S  F  G  *  T  V  K  G  R  F  F  G  C  K  S  I  R  H  R  Y  G  E  R  E  E  E  I  C  S  K  S  S  *  G  *  K  Q  S  S  *  I  S  C  G  R  *  V  T  S  R  S  *  E  D  I  C  I  A  *  G  F  K  A  A  N  E  G  G  R  L  Y  T  R  D  E  V  C  V  T  *  C  R  P  R  N  *  R  G  R  F  N  G  S  Q  R  E  I  G  F  C  S  R  S  Y  E  *  L  C  T  I  T  N  P  D  Y  K  E  S  A  C  L  W  *  L  P  *  C  I  K  D  C  F  K  A  C  R  S  G  N  Y  H  A  R  C  *  K  I  S  S  F  K  R  W  I  V  L  V  *  G  L  L  V  K  I  L  T  F  R  *  Y  L  V  Y  Y  F  F  Y  </second_frame>
            <third_frame>   I  V  E  L  L  D  P  C  R  L  D  E  Q  S  K  A  G  F  L  A  V  K  A  S  D  I  A  T  E  K  E  K  K  K  S  A  Q  S  L  L  E  A  R  S  K  V  H  E  Y  R  A  G  D  R  S  H  P  D  H  E  K  I  Y  A  L  L  R  G  L  K  Q  L  M  K  E  D  G  Y  I  P  E  T  K  F  V  L  H  D  V  D  Q  E  T  K  E  D  A  L  M  A  H  S  E  R  L  A  F  A  Q  G  L  M  N  S  S  A  R  S  P  I  R  I  I  K  N  L  R  V  C  G  D  C  H  N  A  L  K  I  A  S  R  L  V  G  R  E  I  I  M  R  D  A  K  R  F  H  H  L  K  D  G  L  C  S  C  K  D  Y  W  *  R  S  *  P  S  G  N  T  *  Y  I  T  F  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13326" stop="13835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVELLDPCRLDEQSKAGFLAVKASDIATEKEKKKSAQSLLEARSKVHEYRAGDRSHPDHEKIYALLRGLKQLMKEDGYIPETKFVLHDVDQETKEDALMAHSERLAFAQGLMNSSARSPIRIIKNLRVCGDCHNALKIASRLVGREIIMRDAKRFHHLKDGLCSCKDYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="16571" PGL_stop="18567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16571" e_stop="16985"/>
            <exon e_start="17621" e_stop="17710"/>
            <exon e_start="18336" e_stop="18567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16571" e_stop="16985" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.823">
            <gDNA_intron_boundary i_start="16986" i_stop="17620" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17710" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.981">
            <gDNA_intron_boundary i_start="17711" i_stop="18335" i_length="625"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="18336" e_stop="18567" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16985"/>
              <exon start="17621" stop="17710"/>
              <exon start="18336" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16985"/>
              <exon start="17621" stop="17710"/>
              <exon start="18336" stop="18553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGCACAATTTACTTGAACCCAAAGCCTCACTTTTTCCTCTCTCTCTAAGTCTCCTTTTGTCGGGTCTAACTCAATTACAAATCTTTATATGCATGATTTTTAATCAATTAGGGTTTTTTCTCCGCCGGAAAAGTAGATTTCTAAATCATCAGTAGCAAACTTTGTAAGAGCTTCACAAATGACGTGCGATACGTCTTCATCGGGATGCGGTTTGGAGAAATTGGAGTCGTTGAGTGATGATTCCATAACAGTGATATCGGAAAACTGGAATGGCTTTTGCTCTTCTTCAGAAGCTCTTCTCAAAGGCAGTGGTGATTTGTCATTCAGCGATGAGTTTGTAATGCGAGCGAAGAATCTCTGCAAACATGGCCTTTCATCTCTAGTTGAACAACACTTCCTTCGTTGCATTGAG : GAAATTTTTGAGAGAAATGGAGCAAAAAGGTTCTGGAGTTATTTTGAACCTTACAGAAATGCTGCACCATCTGAAACTAATAAGGATCTT : ATTCTAGAAGAAGAAATTCAGCAAATAATATGTAAAGCTTTGGAAGAAATATCATCTCAAAAGCAGTTCCAGGAGAAGTGCCTATTATTGTTGGCTCGTGCTTTACAGTCCTATGAAGAAGACAAATTGCAAGGACAAGCGAACCCAGATTCTACTCGAGTTTATCTCCTCTCGAAATATCAACTAATTGTGTCTTCAGTTCTATTGGCTAGCCTTCCTCACCATTTTCCTG</gDNA_template>
            <first_frame> Q  S  T  I  Y  L  N  P  K  P  H  F  F  L  S  L  *  V  S  F  C  R  V  *  L  N  Y  K  S  L  Y  A  *  F  L  I  N  *  G  F  F  S  A  G  K  V  D  F  *  I  I  S  S  K  L  C  K  S  F  T  N  D  V  R  Y  V  F  I  G  M  R  F  G  E  I  G  V  V  E  *  *  F  H  N  S  D  I  G  K  L  E  W  L  L  L  F  F  R  S  S  S  Q  R  Q  W  *  F  V  I  Q  R  *  V  C  N  A  S  E  E  S  L  Q  T  W  P  F  I  S  S  *  T  T  L  P  S  L  H  *   : G  N  F  *  E  K  W  S  K  K  V  L  E  L  F  *  T  L  Q  K  C  C  T  I  *  N  *  *  G  S   : Y  S  R  R  R  N  S  A  N  N  M  *  S  F  G  R  N  I  I  S  K  A  V  P  G  E  V  P  I  I  V  G  S  C  F  T  V  L  *  R  R  Q  I  A  R  T  S  E  P  R  F  Y  S  S  L  S  P  L  E  I  S  T  N  C  V  F  S  S  I  G  *  P  S  S  P  F  S   </first_frame>
            <second_frame>  R  A  Q  F  T  *  T  Q  S  L  T  F  S  S  L  S  K  S  P  F  V  G  S  N  S  I  T  N  L  Y  M  H  D  F  *  S  I  R  V  F  S  P  P  E  K  *  I  S  K  S  S  V  A  N  F  V  R  A  S  Q  M  T  C  D  T  S  S  S  G  C  G  L  E  K  L  E  S  L  S  D  D  S  I  T  V  I  S  E  N  W  N  G  F  C  S  S  S  E  A  L  L  K  G  S  G  D  L  S  F  S  D  E  F  V  M  R  A  K  N  L  C  K  H  G  L  S  S  L  V  E  Q  H  F  L  R  C  I  E  :  E  I  F  E  R  N  G  A  K  R  F  W  S  Y  F  E  P  Y  R  N  A  A  P  S  E  T  N  K  D  L  :  I  L  E  E  E  I  Q  Q  I  I  C  K  A  L  E  E  I  S  S  Q  K  Q  F  Q  E  K  C  L  L  L  L  A  R  A  L  Q  S  Y  E  E  D  K  L  Q  G  Q  A  N  P  D  S  T  R  V  Y  L  L  S  K  Y  Q  L  I  V  S  S  V  L  L  A  S  L  P  H  H  F  P  </second_frame>
            <third_frame>   E  H  N  L  L  E  P  K  A  S  L  F  P  L  S  L  S  L  L  L  S  G  L  T  Q  L  Q  I  F  I  C  M  I  F  N  Q  L  G  F  F  L  R  R  K  S  R  F  L  N  H  Q  *  Q  T  L  *  E  L  H  K  *  R  A  I  R  L  H  R  D  A  V  W  R  N  W  S  R  *  V  M  I  P  *  Q  *  Y  R  K  T  G  M  A  F  A  L  L  Q  K  L  F  S  K  A  V  V  I  C  H  S  A  M  S  L  *  C  E  R  R  I  S  A  N  M  A  F  H  L  *  L  N  N  T  S  F  V  A  L  R :   K  F  L  R  E  M  E  Q  K  G  S  G  V  I  L  N  L  T  E  M  L  H  H  L  K  L  I  R  I  L :   F  *  K  K  K  F  S  K  *  Y  V  K  L  W  K  K  Y  H  L  K  S  S  S  R  R  S  A  Y  Y  C  W  L  V  L  Y  S  P  M  K  K  T  N  C  K  D  K  R  T  Q  I  L  L  E  F  I  S  S  R  N  I  N  *  L  C  L  Q  F  Y  W  L  A  F  L  T  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16710" stop="16985"/>
                    <exon start="17621" stop="17710"/>
                    <exon start="18336" stop="18566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKSSVANFVRASQMTCDTSSSGCGLEKLESLSDDSITVISENWNGFCSSSEALLKGSGDLSFSDEFVMRAKNLCKHGLSSLVEQHFLRCIEEIFERNGAKRFWSYFEPYRNAAPSETNKDLILEEEIQQIICKALEEISSQKQFQEKCLLLLARALQSYEEDKLQGQANPDSTRVYLLSKYQLIVSSVLLASLPHHFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22068" PGL_stop="24545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22068" e_stop="22118"/>
            <exon e_start="22205" e_stop="22281"/>
            <exon e_start="22844" e_stop="22963"/>
            <exon e_start="23111" e_stop="23199"/>
            <exon e_start="23295" e_stop="23376"/>
            <exon e_start="23460" e_stop="23651"/>
            <exon e_start="24217" e_stop="24285"/>
            <exon e_start="24398" e_stop="24545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.275" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.797" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22068" e_stop="22118" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.955">
            <gDNA_intron_boundary i_start="22119" i_stop="22204" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22205" e_stop="22281" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22282" i_stop="22843" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22844" e_stop="22963" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.275" acc_prob="0.829">
            <gDNA_intron_boundary i_start="22964" i_stop="23110" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23111" e_stop="23199" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.881" acc_prob="0.955">
            <gDNA_intron_boundary i_start="23200" i_stop="23294" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23295" e_stop="23376" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23377" i_stop="23459" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23460" e_stop="23651" e_length="192"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="23652" i_stop="24216" i_length="565"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24217" e_stop="24285" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.797">
            <gDNA_intron_boundary i_start="24286" i_stop="24397" i_length="112"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24398" e_stop="24545" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22068" stop="22118"/>
              <exon start="22205" stop="22281"/>
              <exon start="22844" stop="22963"/>
              <exon start="23111" stop="23199"/>
              <exon start="23295" stop="23376"/>
              <exon start="23460" stop="23651"/>
              <exon start="24217" stop="24285"/>
              <exon start="24398" stop="24545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGACAAATACAAATATAAAAGCAACTATCAAGCATCAACCACAGCCAG : AGCAAAAGGACCTTGATATATCTCTAGATAATGTTAATGCTACCATCATATCTTCAAATTTCTGGCCTCCTATTCAG : GATGAGGCAATCAACTTACCAGAGCCTGTGGAGCAGCTACTGACTGATTATGCTAAAAGGTATACTGAAGTCAAGACACCACGTAAGCTAATATGGAAGAAAAATCTGGGCAGTGTAAAG : TTGGAGCTCCAATTCGAAGATAGAGCAATGCAGTTTAATGTTACTCCTTTGCATGCTTCAATTATTATGCAGTTTCAAGATCAGAAAAA : GTGGATATCTAAGAATCTTGCAGCTGCAGTTGGAGTACCTGTTGATGTGTTGAATAGGAGGATAAATTTTTGGATAAGCAAG : GGAATTCTGGCAGAGTCAATGGGGGCAGACTCTGCTGATCATGCTTTTACTCTGGTGGAAACCATGAATGATACTGGTAAAAGTGGAACTATTGATGGAGGCTGTGAGGAGCTATTGGCAGGTGAGGACGACGGAGAACGCTCTGTGGCCTCTGTTGAAGATCAATTGCGAAAAGAGATGACTGTCTATGAG : AAATTTATCACTGGGATGCTTACCAATTTTGGCAGCATGGCATTGGACCGTATTCATAATACTCTCAAG : ATGTTCTGCATTGCTGATCCTACATATGACAAATCTCTGCAACAACTGCAAAGCTTTTTATCTGGTTTAGTTGCTGAGGAGAAGTTGGAATTCAGAGATGGAATGTACTTTCTGAAAAAGTGATCAATTCCATCTATATTGTCTATTG</gDNA_template>
            <first_frame> R  G  Q  I  Q  I  *  K  Q  L  S  S  I  N  H  S  Q  :  S  K  R  T  L  I  Y  L  *  I  M  L  M  L  P  S  Y  L  Q  I  S  G  L  L  F  R :   M  R  Q  S  T  Y  Q  S  L  W  S  S  Y  *  L  I  M  L  K  G  I  L  K  S  R  H  H  V  S  *  Y  G  R  K  I  W  A  V  *  S :   W  S  S  N  S  K  I  E  Q  C  S  L  M  L  L  L  C  M  L  Q  L  L  C  S  F  K  I  R  K   : S  G  Y  L  R  I  L  Q  L  Q  L  E  Y  L  L  M  C  *  I  G  G  *  I  F  G  *  A  R :   E  F  W  Q  S  Q  W  G  Q  T  L  L  I  M  L  L  L  W  W  K  P  *  M  I  L  V  K  V  E  L  L  M  E  A  V  R  S  Y  W  Q  V  R  T  T  E  N  A  L  W  P  L  L  K  I  N  C  E  K  R  *  L  S  M  R :   N  L  S  L  G  C  L  P  I  L  A  A  W  H  W  T  V  F  I  I  L  S  R :   C  S  A  L  L  I  L  H  M  T  N  L  C  N  N  C  K  A  F  Y  L  V  *  L  L  R  R  S  W  N  S  E  M  E  C  T  F  *  K  S  D  Q  F  H  L  Y  C  L  L </first_frame>
            <second_frame>  E  D  K  Y  K  Y  K  S  N  Y  Q  A  S  T  T  A  R :   A  K  G  P  *  Y  I  S  R  *  C  *  C  Y  H  H  I  F  K  F  L  A  S  Y  S   : G  *  G  N  Q  L  T  R  A  C  G  A  A  T  D  *  L  C  *  K  V  Y  *  S  Q  D  T  T  *  A  N  M  E  E  K  S  G  Q  C  K   : V  G  A  P  I  R  R  *  S  N  A  V  *  C  Y  S  F  A  C  F  N  Y  Y  A  V  S  R  S  E  K  :  V  D  I  *  E  S  C  S  C  S  W  S  T  C  *  C  V  E  *  E  D  K  F  L  D  K  Q   : G  N  S  G  R  V  N  G  G  R  L  C  *  S  C  F  Y  S  G  G  N  H  E  *  Y  W  *  K  W  N  Y  *  W  R  L  *  G  A  I  G  R  *  G  R  R  R  T  L  C  G  L  C  *  R  S  I  A  K  R  D  D  C  L  *   : E  I  Y  H  W  D  A  Y  Q  F  W  Q  H  G  I  G  P  Y  S  *  Y  S  Q   : D  V  L  H  C  *  S  Y  I  *  Q  I  S  A  T  T  A  K  L  F  I  W  F  S  C  *  G  E  V  G  I  Q  R  W  N  V  L  S  E  K  V  I  N  S  I  Y  I  V  Y   </second_frame>
            <third_frame>   R  T  N  T  N  I  K  A  T  I  K  H  Q  P  Q  P   : E  Q  K  D  L  D  I  S  L  D  N  V  N  A  T  I  I  S  S  N  F  W  P  P  I  Q  :  D  E  A  I  N  L  P  E  P  V  E  Q  L  L  T  D  Y  A  K  R  Y  T  E  V  K  T  P  R  K  L  I  W  K  K  N  L  G  S  V  K  :  L  E  L  Q  F  E  D  R  A  M  Q  F  N  V  T  P  L  H  A  S  I  I  M  Q  F  Q  D  Q  K  K :   W  I  S  K  N  L  A  A  A  V  G  V  P  V  D  V  L  N  R  R  I  N  F  W  I  S  K  :  G  I  L  A  E  S  M  G  A  D  S  A  D  H  A  F  T  L  V  E  T  M  N  D  T  G  K  S  G  T  I  D  G  G  C  E  E  L  L  A  G  E  D  D  G  E  R  S  V  A  S  V  E  D  Q  L  R  K  E  M  T  V  Y  E  :  K  F  I  T  G  M  L  T  N  F  G  S  M  A  L  D  R  I  H  N  T  L  K  :  M  F  C  I  A  D  P  T  Y  D  K  S  L  Q  Q  L  Q  S  F  L  S  G  L  V  A  E  E  K  L  E  F  R  D  G  M  Y  F  L  K  K  *  S  I  P  S  I  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22070" stop="22118"/>
                    <exon start="22205" stop="22281"/>
                    <exon start="22844" stop="22963"/>
                    <exon start="23111" stop="23199"/>
                    <exon start="23295" stop="23376"/>
                    <exon start="23460" stop="23651"/>
                    <exon start="24217" stop="24285"/>
                    <exon start="24398" stop="24520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTNTNIKATIKHQPQPEQKDLDISLDNVNATIISSNFWPPIQDEAINLPEPVEQLLTDYAKRYTEVKTPRKLIWKKNLGSVKLELQFEDRAMQFNVTPLHASIIMQFQDQKKWISKNLAAAVGVPVDVLNRRINFWISKGILAESMGADSADHAFTLVETMNDTGKSGTIDGGCEELLAGEDDGERSVASVEDQLRKEMTVYEKFITGMLTNFGSMALDRIHNTLKMFCIADPTYDKSLQQLQSFLSGLVAEEKLEFRDGMYFLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="25012" PGL_stop="24526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25012" e_stop="24526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="25012" e_stop="24526" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25012" stop="24526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAGTGTATTCAGTTTACATCATATACAGCATTCAGCAAATAAACAATGGCACCCCTTTCTATTGAAAACAAATGTGCAATCTTCTCAGTTTACATCATATACAGAAAATAAATGAACTGTTAACTTAATGACTAGCTAACCTTCTATAACGAACCAGATCCAACGTCTACTCTTGGATGGCTTTGTCTCTTTCTCATCGCGAAGGATCTGCTAATAAATATTACTAACAGTCTTACGCGTTTAGCATATCGAGTCATTCTAACCACAGGAATCTTCTTGATTTGCACTTACCCTCAGCTTGATTAAATAGCACGCAATGATGGACTGCAAGGAATTTACAGATATTTCTGCACTTGAAAAGAGAAGAAAAAAAGACCTCTCTGCAGTCAATGTTTGTTATTACCTTCTTAACGACACGTTATTGCATTTCATCAGTCTGAGGAGTGAAGATAAGATTTATGCCACCAATAGACAATATAGATGGA</gDNA_template>
            <first_frame> A  S  V  F  S  L  H  H  I  Q  H  S  A  N  K  Q  W  H  P  F  L  L  K  T  N  V  Q  S  S  Q  F  T  S  Y  T  E  N  K  *  T  V  N  L  M  T  S  *  P  S  I  T  N  Q  I  Q  R  L  L  L  D  G  F  V  S  F  S  S  R  R  I  C  *  *  I  L  L  T  V  L  R  V  *  H  I  E  S  F  *  P  Q  E  S  S  *  F  A  L  T  L  S  L  I  K  *  H  A  M  M  D  C  K  E  F  T  D  I  S  A  L  E  K  R  R  K  K  D  L  S  A  V  N  V  C  Y  Y  L  L  N  D  T  L  L  H  F  I  S  L  R  S  E  D  K  I  Y  A  T  N  R  Q  Y  R  W  </first_frame>
            <second_frame>  L  V  Y  S  V  Y  I  I  Y  S  I  Q  Q  I  N  N  G  T  P  F  Y  *  K  Q  M  C  N  L  L  S  L  H  H  I  Q  K  I  N  E  L  L  T  *  *  L  A  N  L  L  *  R  T  R  S  N  V  Y  S  W  M  A  L  S  L  S  H  R  E  G  S  A  N  K  Y  Y  *  Q  S  Y  A  F  S  I  S  S  H  S  N  H  R  N  L  L  D  L  H  L  P  S  A  *  L  N  S  T  Q  *  W  T  A  R  N  L  Q  I  F  L  H  L  K  R  E  E  K  K  T  S  L  Q  S  M  F  V  I  T  F  L  T  T  R  Y  C  I  S  S  V  *  G  V  K  I  R  F  M  P  P  I  D  N  I  D  G </second_frame>
            <third_frame>   *  C  I  Q  F  T  S  Y  T  A  F  S  K  *  T  M  A  P  L  S  I  E  N  K  C  A  I  F  S  V  Y  I  I  Y  R  K  *  M  N  C  *  L  N  D  *  L  T  F  Y  N  E  P  D  P  T  S  T  L  G  W  L  C  L  F  L  I  A  K  D  L  L  I  N  I  T  N  S  L  T  R  L  A  Y  R  V  I  L  T  T  G  I  F  L  I  C  T  Y  P  Q  L  D  *  I  A  R  N  D  G  L  Q  G  I  Y  R  Y  F  C  T  *  K  E  K  K  K  R  P  L  C  S  Q  C  L  L  L  P  S  *  R  H  V  I  A  F  H  Q  S  E  E  *  R  *  D  L  C  H  Q  *  T  I  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0084G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="25743" PGL_stop="26236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25743" e_stop="26236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="25743" e_stop="26236" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25743" stop="26236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTGGAAACACCCATTTCAAGACTCTGCTTTGTAAAGGTAAGATTTTGCTAAGTCTCAATCAATATGGTTTGGCTTTAGATTGTTTTAAGAAAGCAAGTCTTGATCCCAATGAGTTAGAAAATTCTGAAATGCTTAATGGGTATTTAGAGAAGTGTAGAAAGTTTGAATTTTTATCAAGAACTGGTGCTTTTGATATCTCTGATTGGGTACTTAATAAGTTTCAAGGCAAACCCCCTGAGCTAGCTGAGTACATTGGTTCAATAGAGATTAAGAAATCAGATATCAGTGGGCGTGGATTGTTCGCGACAAAGAATCTTGATTGTGGGAGCTTGTTGTTAGTTACTAAAGCTGTTGCTGTTGAAAGAGCTATAGTACCTGAATCTGTTTTTCAAGATTCTAAGGAACAAGCTCAGTTAGATATGTGGAGGAATTTCATTGACAGAATCTTGGAATCTATTAAGAAATGTAATCGAACACGAGATTTGATTAG</gDNA_template>
            <first_frame> Q  I  G  N  T  H  F  K  T  L  L  C  K  G  K  I  L  L  S  L  N  Q  Y  G  L  A  L  D  C  F  K  K  A  S  L  D  P  N  E  L  E  N  S  E  M  L  N  G  Y  L  E  K  C  R  K  F  E  F  L  S  R  T  G  A  F  D  I  S  D  W  V  L  N  K  F  Q  G  K  P  P  E  L  A  E  Y  I  G  S  I  E  I  K  K  S  D  I  S  G  R  G  L  F  A  T  K  N  L  D  C  G  S  L  L  L  V  T  K  A  V  A  V  E  R  A  I  V  P  E  S  V  F  Q  D  S  K  E  Q  A  Q  L  D  M  W  R  N  F  I  D  R  I  L  E  S  I  K  K  C  N  R  T  R  D  L  I   </first_frame>
            <second_frame>  K  L  E  T  P  I  S  R  L  C  F  V  K  V  R  F  C  *  V  S  I  N  M  V  W  L  *  I  V  L  R  K  Q  V  L  I  P  M  S  *  K  I  L  K  C  L  M  G  I  *  R  S  V  E  S  L  N  F  Y  Q  E  L  V  L  L  I  S  L  I  G  Y  L  I  S  F  K  A  N  P  L  S  *  L  S  T  L  V  Q  *  R  L  R  N  Q  I  S  V  G  V  D  C  S  R  Q  R  I  L  I  V  G  A  C  C  *  L  L  K  L  L  L  L  K  E  L  *  Y  L  N  L  F  F  K  I  L  R  N  K  L  S  *  I  C  G  G  I  S  L  T  E  S  W  N  L  L  R  N  V  I  E  H  E  I  *  L  </second_frame>
            <third_frame>   N  W  K  H  P  F  Q  D  S  A  L  *  R  *  D  F  A  K  S  Q  S  I  W  F  G  F  R  L  F  *  E  S  K  S  *  S  Q  *  V  R  K  F  *  N  A  *  W  V  F  R  E  V  *  K  V  *  I  F  I  K  N  W  C  F  *  Y  L  *  L  G  T  *  *  V  S  R  Q  T  P  *  A  S  *  V  H  W  F  N  R  D  *  E  I  R  Y  Q  W  A  W  I  V  R  D  K  E  S  *  L  W  E  L  V  V  S  Y  *  S  C  C  C  *  K  S  Y  S  T  *  I  C  F  S  R  F  *  G  T  S  S  V  R  Y  V  E  E  F  H  *  Q  N  L  G  I  Y  *  E  M  *  S  N  T  R  F  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25743" stop="26234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGNTHFKTLLCKGKILLSLNQYGLALDCFKKASLDPNELENSEMLNGYLEKCRKFEFLSRTGAFDISDWVLNKFQGKPPELAEYIGSIEIKKSDISGRGLFATKNLDCGSLLLVTKAVAVERAIVPESVFQDSKEQAQLDMWRNFIDRILESIKKCNRTRDLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="32690" PGL_stop="34653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32690" e_stop="32995"/>
            <exon e_start="33106" e_stop="33386"/>
            <exon e_start="33894" e_stop="34653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.794" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32690" e_stop="32995" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32996" i_stop="33105" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33106" e_stop="33386" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.794">
            <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="33894" e_stop="34653" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32690" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32690" stop="32995"/>
              <exon start="33106" stop="33382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32694" stop="32995"/>
              <exon start="33106" stop="33383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32694" stop="32995"/>
              <exon start="33106" stop="33161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32995"/>
              <exon start="33106" stop="33132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="33911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="33910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32698" stop="32995"/>
              <exon start="33106" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="32995"/>
              <exon start="33106" stop="33386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="32995"/>
              <exon start="33106" stop="33286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32715" stop="32995"/>
              <exon start="33106" stop="33346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32715" stop="32995"/>
              <exon start="33106" stop="33334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32716" stop="32995"/>
              <exon start="33106" stop="33260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32722" stop="32995"/>
              <exon start="33106" stop="33291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="33966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="33959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="33920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32751" stop="32995"/>
              <exon start="33106" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32798" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32909" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32995"/>
              <exon start="33106" stop="33281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32928" stop="32995"/>
              <exon start="33106" stop="33386"/>
              <exon start="33894" stop="34154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33123" stop="33386"/>
              <exon start="33894" stop="34137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33123" stop="33386"/>
              <exon start="33894" stop="34135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33386"/>
              <exon start="33894" stop="34211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33193" stop="33386"/>
              <exon start="33894" stop="34271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33194" stop="33386"/>
              <exon start="33894" stop="34056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33298" stop="33386"/>
              <exon start="33894" stop="34539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33308" stop="33386"/>
              <exon start="33894" stop="34488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421953" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33315" stop="33386"/>
              <exon start="33894" stop="34438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33386"/>
              <exon start="33894" stop="34404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33917" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34399" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTCTCATTTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTG : AAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG : TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT</gDNA_template>
            <first_frame> T  S  H  F  P  P  Y  R  I  K  K  K  K  T  K  I  S  F  S  L  N  F  L  A  F  V  *  K  K  Q  R  K  R  R  I  V  P  F  Y  L  F  L  Y  F  C  I  K  W  L  E  K  L  A  L  I  F  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  T  I  F  D  I  K  L  L  Q  G  H  A  L  S  Q  L  S  P  K  L  M  S  T  S  S  I  P  G  Y  Y  L  :  K  R  Q  N  L  E  T  M  S  G  I  F  L  P  L  E  I  E  N  I  Q  M  V  L  G  Q  I  E  Q  L  C  Q  V  I  G  R  L  L  A  L  I  K  Q  F  I  V  Q  I  N  M  L  E  L  K  K  H  L  F  F  T  K  A  N  H  Q  K  V  S  R  L  I  G  S  C  M  N  I  V  *  V  I  Q  S  L  K  H  L  S  K  V  D  L  *  G :   *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  L  *  R  *  *  K  L  K  K  K  N  *  R  H  K  M  *  V  L  Q  I  M  K  L  K  L  L  V  D  H  K  Q  *  N  Y  Q  E  F  V  H  C  H  I  Y  W  N  W  I  I  L  D  Q  F  H  N  Y  *  V  T  I  Y  Y  M  M  T  K  V  T  Q  *  I  M  *  I  T  Q  V  M  W  I  K  Y  H  H  N  N  K  I  Q  I  I  L  Q  A  I  I  V  I  F  S  S  I  I  N  N  H  F  L  *  I  Q  H  F  N  L  S  D  D  Q  *  R  R  Q  N  F  H  Q  E  S  S  K  *  I  L  S  Y  I  K  G  V  Q  Y  V  D  N  Y  I  *  N  I  F  S  T  K  R  F  M  A  G  *  K  Y  I  Y  M  K  A  I  G  *  K  G  D  I  K  S  L  *  Q  Q  L  *  N  I  I  K  C  Y  V  I  S  I  I  S  N  K  P  C  S  R  A  T  N  C  C  C  I  I  L  E  F  S  F  S  V  C  I  W  K  K  K  T  N  L  L  C  E  I  L  I  N  I  F  Q  Y  S </first_frame>
            <second_frame>  L  L  I  F  L  P  I  E  L  K  K  K  K  L  K  F  H  F  L  S  I  S  L  L  L  F  K  K  N  K  E  K  E  E  L  F  H  F  I  Y  F  Y  I  F  V  *  N  G  W  K  N  *  L  *  S  S  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  I  S  S  Y  F  K  A  M  P  C  L  N  Y  P  R  N  *  C  L  Q  V  R  S  L  G  I  T  * :   K  G  R  I  W  R  Q  *  V  V  F  F  Y  P  *  R  *  K  I  S  K  W  C  *  A  K  *  S  S  C  V  R  L  L  E  G  Y  W  H  *  *  S  N  L  *  C  K  *  I  C  W  N  *  K  S  T  C  F  L  Q  R  Q  T  T  K  R  C  Q  D  *  L  D  H  A  *  I  S  F  E  *  F  K  V  S  N  I  *  A  K  W  I  Y  E   : V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N  Y  R  D  D  E  S  *  R  R  R  I  R  G  T  K  C  E  Y  Y  K  *  *  N  *  S  C  W  W  T  T  N  N  E  I  T  K  N  L  F  I  V  T  S  I  G  I  G  L  F  W  I  N  S  T  I  T  K  *  Q  F  I  I  *  *  P  R  L  H  N  E  *  C  E  *  H  K  *  C  G  S  S  I  I  T  T  T  K  Y  K  *  Y  Y  K  Q  *  L  *  Y  F  L  Q  L  S  T  T  T  F  C  E  S  N  I  S  I  S  V  M  I  N  S  G  D  R  I  F  I  K  N  L  L  N  R  F  S  V  I  S  K  G  F  N  M  *  I  I  I  Y  K  I  F  F  Q  R  R  G  S  W  P  G  E  N  I  F  I  *  R  L  L  D  E  K  V  T  S  K  V  Y  D  N  N  C  K  I  *  S  N  V  M  S  L  V  L  L  A  T  N  L  V  V  G  Q  Q  I  V  V  V  L  F  *  N  L  V  S  Q  F  V  F  G  K  K  K  L  I  Y  F  V  K  F  *  *  I  F  F  S  I   </second_frame>
            <third_frame>   F  S  F  S  S  L  *  N  *  K  K  K  N  *  N  F  I  F  S  Q  F  P  C  F  C  L  K  K  T  K  K  K  K  N  C  S  I  L  F  I  S  I  F  L  Y  K  M  V  G  K  I  S  S  D  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  Y  Q  A  T  S  R  P  C  P  V  S  I  I  P  E  I  D  V  Y  K  F  D  P  W  V  L  P   : E  K  A  E  F  G  D  N  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  A  I  Y  S  A  N  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  V  K  T  D  W  I  M  H  E  Y  R  L  S  D  S  K  S  Q  T  S  K  Q  S  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R  T  I  E  M  M  K  V  E  E  E  E  L  E  A  Q  N  V  S  T  T  N  N  E  I  E  V  V  G  G  P  Q  T  M  K  L  P  R  I  C  S  L  S  H  L  L  E  L  D  Y  F  G  S  I  P  Q  L  L  S  D  N  L  L  Y  D  D  Q  G  Y  T  M  N  N  V  N  N  T  S  N  V  D  Q  V  S  S  Q  Q  Q  N  T  N  N  I  T  S  N  N  C  N  I  F  F  N  Y  Q  Q  P  L  F  V  N  P  T  F  Q  S  Q  *  *  S  I  A  E  T  E  F  S  S  R  I  F  *  I  D  S  Q  L  Y  Q  R  G  S  I  C  R  *  L  Y  I  K  Y  F  F  N  E  E  V  H  G  R  V  K  I  Y  L  Y  E  G  Y  W  M  K  R  *  H  Q  K  F  M  T  T  I  V  K  Y  N  Q  M  L  C  H  *  Y  Y  *  Q  Q  T  L  *  *  G  N  K  L  L  L  Y  Y  F  R  I  *  F  L  S  L  Y  L  E  K  K  N  *  F  T  L  *  N  F  N  K  Y  F  S  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32734" stop="32995"/>
                    <exon start="33106" stop="33386"/>
                    <exon start="33894" stop="34295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIFSQFPCFCLKKTKKKKNCSILFISIFLYKMVGKISSDLPPGFRFHPTDEELIMYYLRYQATSRPCPVSIIPEIDVYKFDPWVLPEKAEFGDNEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRLSDSKSQTSKQSGSMRLDDWVLCRIYKKKNLGRTIEMMKVEEEELEAQNVSTTNNEIEVVGGPQTMKLPRICSLSHLLELDYFGSIPQLLSDNLLYDDQGYTMNNVNNTSNVDQVSSQQQNTNNITSNNCNIFFNYQQPLFVNPTFQSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32699" e_stop="33386"/>
            <exon e_start="33894" e_stop="34653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.794" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32699" e_stop="33386" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.794">
            <gDNA_intron_boundary i_start="33387" i_stop="33893" i_length="507"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="33894" e_stop="34653" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32699" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32703" stop="33386"/>
              <exon start="33894" stop="33914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="33270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="33262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32704" stop="33163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32706" stop="33053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32773" stop="33386"/>
              <exon start="33894" stop="33946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32773" stop="33386"/>
              <exon start="33894" stop="33916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32774" stop="33335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32774" stop="33163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32814" stop="33073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32848" stop="33177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33102" stop="33262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33103" stop="33386"/>
              <exon start="33894" stop="34083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33103" stop="33386"/>
              <exon start="33894" stop="33977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33103" stop="33386"/>
              <exon start="33894" stop="33962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33103" stop="33385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33123" stop="33386"/>
              <exon start="33894" stop="34137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33123" stop="33386"/>
              <exon start="33894" stop="34135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33181" stop="33386"/>
              <exon start="33894" stop="34211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33193" stop="33386"/>
              <exon start="33894" stop="34271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33194" stop="33386"/>
              <exon start="33894" stop="34056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33257" stop="33386"/>
              <exon start="33894" stop="34304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33298" stop="33386"/>
              <exon start="33894" stop="34539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33308" stop="33386"/>
              <exon start="33894" stop="34488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421953" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33315" stop="33386"/>
              <exon start="33894" stop="34438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33386"/>
              <exon start="33894" stop="34404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33917" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34399" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTCCCTATAGAATTAAAAAAAAAAAAACTAAAATTTCATTTTCTCTCAATTTCCTTGCTTTTGTTTAAAAAAAACAAAGAAAAAGAAGAATTGTTCCATTTTATTTATTTCTATATTTTTGTATAAAATGGTTGGAAAAATTAGCTCTGATCTTCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTACTATCTTCGATATCAAGCTACTTCAAGGCCATGCCCTGTCTCAATTATCCCCGAAATTGATGTCTACAAGTTCGATCCCTGGGTATTACCTGGTTAGTACATCTAATATATACGTGTACTCGAAAATCTTATTAAAATTTTTAAATTCAAATAAATATCATTTATGATTATTATTATTATTTTGTTTTTATAAAATGTGTAGAAAAGGCAGAATTTGGAGACAATGAGTGGTATTTTTTTACCCCTAGAGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGAGCAGCTGTGTCAGGTTATTGGAAGGCTACTGGCACTGATAAAGCAATTTATAGTGCAAATAAATATGTTGGAATTAAAAAAGCACTTGTTTTTTACAAAGGCAAACCACCAAAAGGTGTCAAGACTGATTGGATCATGCATGAATATCGTTTGAGTGATTCAAAGTCTCAAACATCTAAGCAAAGTGGATCTATGAGG : TTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT</gDNA_template>
            <first_frame> F  P  P  Y  R  I  K  K  K  K  T  K  I  S  F  S  L  N  F  L  A  F  V  *  K  K  Q  R  K  R  R  I  V  P  F  Y  L  F  L  Y  F  C  I  K  W  L  E  K  L  A  L  I  F  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  T  I  F  D  I  K  L  L  Q  G  H  A  L  S  Q  L  S  P  K  L  M  S  T  S  S  I  P  G  Y  Y  L  V  S  T  S  N  I  Y  V  Y  S  K  I  L  L  K  F  L  N  S  N  K  Y  H  L  *  L  L  L  L  F  C  F  Y  K  M  C  R  K  G  R  I  W  R  Q  *  V  V  F  F  Y  P  *  R  *  K  I  S  K  W  C  *  A  K  *  S  S  C  V  R  L  L  E  G  Y  W  H  *  *  S  N  L  *  C  K  *  I  C  W  N  *  K  S  T  C  F  L  Q  R  Q  T  T  K  R  C  Q  D  *  L  D  H  A  *  I  S  F  E  *  F  K  V  S  N  I  *  A  K  W  I  Y  E   : V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N  Y  R  D  D  E  S  *  R  R  R  I  R  G  T  K  C  E  Y  Y  K  *  *  N  *  S  C  W  W  T  T  N  N  E  I  T  K  N  L  F  I  V  T  S  I  G  I  G  L  F  W  I  N  S  T  I  T  K  *  Q  F  I  I  *  *  P  R  L  H  N  E  *  C  E  *  H  K  *  C  G  S  S  I  I  T  T  T  K  Y  K  *  Y  Y  K  Q  *  L  *  Y  F  L  Q  L  S  T  T  T  F  C  E  S  N  I  S  I  S  V  M  I  N  S  G  D  R  I  F  I  K  N  L  L  N  R  F  S  V  I  S  K  G  F  N  M  *  I  I  I  Y  K  I  F  F  Q  R  R  G  S  W  P  G  E  N  I  F  I  *  R  L  L  D  E  K  V  T  S  K  V  Y  D  N  N  C  K  I  *  S  N  V  M  S  L  V  L  L  A  T  N  L  V  V  G  Q  Q  I  V  V  V  L  F  *  N  L  V  S  Q  F  V  F  G  K  K  K  L  I  Y  F  V  K  F  *  *  I  F  F  S  I   </first_frame>
            <second_frame>  F  L  P  I  E  L  K  K  K  K  L  K  F  H  F  L  S  I  S  L  L  L  F  K  K  N  K  E  K  E  E  L  F  H  F  I  Y  F  Y  I  F  V  *  N  G  W  K  N  *  L  *  S  S  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  I  S  S  Y  F  K  A  M  P  C  L  N  Y  P  R  N  *  C  L  Q  V  R  S  L  G  I  T  W  L  V  H  L  I  Y  T  C  T  R  K  S  Y  *  N  F  *  I  Q  I  N  I  I  Y  D  Y  Y  Y  Y  F  V  F  I  K  C  V  E  K  A  E  F  G  D  N  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  A  I  Y  S  A  N  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  V  K  T  D  W  I  M  H  E  Y  R  L  S  D  S  K  S  Q  T  S  K  Q  S  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R  T  I  E  M  M  K  V  E  E  E  E  L  E  A  Q  N  V  S  T  T  N  N  E  I  E  V  V  G  G  P  Q  T  M  K  L  P  R  I  C  S  L  S  H  L  L  E  L  D  Y  F  G  S  I  P  Q  L  L  S  D  N  L  L  Y  D  D  Q  G  Y  T  M  N  N  V  N  N  T  S  N  V  D  Q  V  S  S  Q  Q  Q  N  T  N  N  I  T  S  N  N  C  N  I  F  F  N  Y  Q  Q  P  L  F  V  N  P  T  F  Q  S  Q  *  *  S  I  A  E  T  E  F  S  S  R  I  F  *  I  D  S  Q  L  Y  Q  R  G  S  I  C  R  *  L  Y  I  K  Y  F  F  N  E  E  V  H  G  R  V  K  I  Y  L  Y  E  G  Y  W  M  K  R  *  H  Q  K  F  M  T  T  I  V  K  Y  N  Q  M  L  C  H  *  Y  Y  *  Q  Q  T  L  *  *  G  N  K  L  L  L  Y  Y  F  R  I  *  F  L  S  L  Y  L  E  K  K  N  *  F  T  L  *  N  F  N  K  Y  F  S  V  F  </second_frame>
            <third_frame>   S  S  L  *  N  *  K  K  K  N  *  N  F  I  F  S  Q  F  P  C  F  C  L  K  K  T  K  K  K  K  N  C  S  I  L  F  I  S  I  F  L  Y  K  M  V  G  K  I  S  S  D  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  Y  Q  A  T  S  R  P  C  P  V  S  I  I  P  E  I  D  V  Y  K  F  D  P  W  V  L  P  G  *  Y  I  *  Y  I  R  V  L  E  N  L  I  K  I  F  K  F  K  *  I  S  F  M  I  I  I  I  I  L  F  L  *  N  V  *  K  R  Q  N  L  E  T  M  S  G  I  F  L  P  L  E  I  E  N  I  Q  M  V  L  G  Q  I  E  Q  L  C  Q  V  I  G  R  L  L  A  L  I  K  Q  F  I  V  Q  I  N  M  L  E  L  K  K  H  L  F  F  T  K  A  N  H  Q  K  V  S  R  L  I  G  S  C  M  N  I  V  *  V  I  Q  S  L  K  H  L  S  K  V  D  L  *  G :   *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  L  *  R  *  *  K  L  K  K  K  N  *  R  H  K  M  *  V  L  Q  I  M  K  L  K  L  L  V  D  H  K  Q  *  N  Y  Q  E  F  V  H  C  H  I  Y  W  N  W  I  I  L  D  Q  F  H  N  Y  *  V  T  I  Y  Y  M  M  T  K  V  T  Q  *  I  M  *  I  T  Q  V  M  W  I  K  Y  H  H  N  N  K  I  Q  I  I  L  Q  A  I  I  V  I  F  S  S  I  I  N  N  H  F  L  *  I  Q  H  F  N  L  S  D  D  Q  *  R  R  Q  N  F  H  Q  E  S  S  K  *  I  L  S  Y  I  K  G  V  Q  Y  V  D  N  Y  I  *  N  I  F  S  T  K  R  F  M  A  G  *  K  Y  I  Y  M  K  A  I  G  *  K  G  D  I  K  S  L  *  Q  Q  L  *  N  I  I  K  C  Y  V  I  S  I  I  S  N  K  P  C  S  R  A  T  N  C  C  C  I  I  L  E  F  S  F  S  V  C  I  W  K  K  K  T  N  L  L  C  E  I  L  I  N  I  F  Q  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33048" stop="33386"/>
                    <exon start="33894" stop="34295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQINIIYDYYYYFVFIKCVEKAEFGDNEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRLSDSKSQTSKQSGSMRLDDWVLCRIYKKKNLGRTIEMMKVEEEELEAQNVSTTNNEIEVVGGPQTMKLPRICSLSHLLELDYFGSIPQLLSDNLLYDDQGYTMNNVNNTSNVDQVSSQQQNTNNITSNNCNIFFNYQQPLFVNPTFQSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32734" stop="33000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFIFSQFPCFCLKKTKKKKNCSILFISIFLYKMVGKISSDLPPGFRFHPTDEELIMYYLRYQATSRPCPVSIIPEIDVYKFDPWVLPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33464" e_stop="34653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="33464" e_stop="34653" e_length="1190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33464" stop="33946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33606" stop="34139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33917" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34056" stop="34636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34399" stop="34653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTAGCTATGGATTTTGTTGTTGTTTAATGATAAAAGTAACTTGATAGTCGCTAATTCTTGTTTTAAAAAAAAAGTTTTAATCATTTCGCTAGTTACCCCAAAAAAAAAGAAAATTGAAATTAGCTATGAATTCTATCGTTAATCTGTTGATTTTCTCTGTAATTGTGATTTGACATGTGGTCTAATAGCCATGAATTATTTTAGTAAGGGCAAAATAGATATTTTGAAGTTAAGTTATTATTTAATATAAAAATGCATCAGTATTGTTTAGATTGATTAAAAAGGAAAGTGAGTCATATATATATATATGAACTGGGACAAAAGAAATATTATTTTATATCAGGTGTATTATTCGGATTTATTTCTTTCTTTTGATGAAGAATTAAGCTAATATTCTTTTTTTTCTTGGCTATTTTTTTTTTTCAGTTAGATGATTGGGTACTATGTAGAATTTATAAGAAGAAAAATTTGGGGAGAACTATAGAGATGATGAAAGTTGAAGAAGAAGAATTAGAGGCACAAAATGTGAGTACTACAAATAATGAAATTGAAGTTGTTGGTGGACCACAAACAATGAAATTACCAAGAATTTGTTCATTGTCACATCTATTGGAATTGGATTATTTTGGATCAATTCCACAATTACTAAGTGACAATTTATTATATGATGACCAAGGTTACACAATGAATAATGTGAATAACACAAGTAATGTGGATCAAGTATCATCACAACAACAAAATACAAATAATATTACAAGCAATAATTGTAATATTTTCTTCAATTATCAACAACCACTTTTTGTGAATCCAACATTTCAATCTCAGTGATGATCAATAGCGGAGACAGAATTTTCATCAAGAATCTTCTAAATAGATTCTCAGTTATATCAAAGGGGTTCAATATGTAGATAATTATATATAAAATATTTTTTCAACGAAGAGGTTCATGGCCGGGTGAAAATATATTTATATGAAGGCTATTGGATGAAAAGGTGACATCAAAAGTTTATGACAACAATTGTAAAATATAATCAAATGTTATGTCATTAGTATTATTAGCAACAAACCTTGTAGTAGGGCAACAAATTGTTGTTGTATTATTTTAGAATTTAGTTTCTCAGTTTGTATTTGGAAAAAAAAAACTAATTTACTTTGTGAAATTTTAATAAATATTTTTCAGTATTCT</gDNA_template>
            <first_frame> R  V  S  Y  G  F  C  C  C  L  M  I  K  V  T  *  *  S  L  I  L  V  L  K  K  K  F  *  S  F  R  *  L  P  Q  K  K  R  K  L  K  L  A  M  N  S  I  V  N  L  L  I  F  S  V  I  V  I  *  H  V  V  *  *  P  *  I  I  L  V  R  A  K  *  I  F  *  S  *  V  I  I  *  Y  K  N  A  S  V  L  F  R  L  I  K  K  E  S  E  S  Y  I  Y  I  *  T  G  T  K  E  I  L  F  Y  I  R  C  I  I  R  I  Y  F  F  L  L  M  K  N  *  A  N  I  L  F  F  L  G  Y  F  F  F  S  V  R  *  L  G  T  M  *  N  L  *  E  E  K  F  G  E  N  Y  R  D  D  E  S  *  R  R  R  I  R  G  T  K  C  E  Y  Y  K  *  *  N  *  S  C  W  W  T  T  N  N  E  I  T  K  N  L  F  I  V  T  S  I  G  I  G  L  F  W  I  N  S  T  I  T  K  *  Q  F  I  I  *  *  P  R  L  H  N  E  *  C  E  *  H  K  *  C  G  S  S  I  I  T  T  T  K  Y  K  *  Y  Y  K  Q  *  L  *  Y  F  L  Q  L  S  T  T  T  F  C  E  S  N  I  S  I  S  V  M  I  N  S  G  D  R  I  F  I  K  N  L  L  N  R  F  S  V  I  S  K  G  F  N  M  *  I  I  I  Y  K  I  F  F  Q  R  R  G  S  W  P  G  E  N  I  F  I  *  R  L  L  D  E  K  V  T  S  K  V  Y  D  N  N  C  K  I  *  S  N  V  M  S  L  V  L  L  A  T  N  L  V  V  G  Q  Q  I  V  V  V  L  F  *  N  L  V  S  Q  F  V  F  G  K  K  K  L  I  Y  F  V  K  F  *  *  I  F  F  S  I   </first_frame>
            <second_frame>  E  L  A  M  D  F  V  V  V  *  *  *  K  *  L  D  S  R  *  F  L  F  *  K  K  S  F  N  H  F  A  S  Y  P  K  K  K  E  N  *  N  *  L  *  I  L  S  L  I  C  *  F  S  L  *  L  *  F  D  M  W  S  N  S  H  E  L  F  *  *  G  Q  N  R  Y  F  E  V  K  L  L  F  N  I  K  M  H  Q  Y  C  L  D  *  L  K  R  K  V  S  H  I  Y  I  Y  E  L  G  Q  K  K  Y  Y  F  I  S  G  V  L  F  G  F  I  S  F  F  *  *  R  I  K  L  I  F  F  F  F  L  A  I  F  F  F  Q  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  G  R  T  I  E  M  M  K  V  E  E  E  E  L  E  A  Q  N  V  S  T  T  N  N  E  I  E  V  V  G  G  P  Q  T  M  K  L  P  R  I  C  S  L  S  H  L  L  E  L  D  Y  F  G  S  I  P  Q  L  L  S  D  N  L  L  Y  D  D  Q  G  Y  T  M  N  N  V  N  N  T  S  N  V  D  Q  V  S  S  Q  Q  Q  N  T  N  N  I  T  S  N  N  C  N  I  F  F  N  Y  Q  Q  P  L  F  V  N  P  T  F  Q  S  Q  *  *  S  I  A  E  T  E  F  S  S  R  I  F  *  I  D  S  Q  L  Y  Q  R  G  S  I  C  R  *  L  Y  I  K  Y  F  F  N  E  E  V  H  G  R  V  K  I  Y  L  Y  E  G  Y  W  M  K  R  *  H  Q  K  F  M  T  T  I  V  K  Y  N  Q  M  L  C  H  *  Y  Y  *  Q  Q  T  L  *  *  G  N  K  L  L  L  Y  Y  F  R  I  *  F  L  S  L  Y  L  E  K  K  N  *  F  T  L  *  N  F  N  K  Y  F  S  V  F  </second_frame>
            <third_frame>   S  *  L  W  I  L  L  L  F  N  D  K  S  N  L  I  V  A  N  S  C  F  K  K  K  V  L  I  I  S  L  V  T  P  K  K  K  K  I  E  I  S  Y  E  F  Y  R  *  S  V  D  F  L  C  N  C  D  L  T  C  G  L  I  A  M  N  Y  F  S  K  G  K  I  D  I  L  K  L  S  Y  Y  L  I  *  K  C  I  S  I  V  *  I  D  *  K  G  K  *  V  I  Y  I  Y  M  N  W  D  K  R  N  I  I  L  Y  Q  V  Y  Y  S  D  L  F  L  S  F  D  E  E  L  S  *  Y  S  F  F  S  W  L  F  F  F  F  S  *  M  I  G  Y  Y  V  E  F  I  R  R  K  I  W  G  E  L  *  R  *  *  K  L  K  K  K  N  *  R  H  K  M  *  V  L  Q  I  M  K  L  K  L  L  V  D  H  K  Q  *  N  Y  Q  E  F  V  H  C  H  I  Y  W  N  W  I  I  L  D  Q  F  H  N  Y  *  V  T  I  Y  Y  M  M  T  K  V  T  Q  *  I  M  *  I  T  Q  V  M  W  I  K  Y  H  H  N  N  K  I  Q  I  I  L  Q  A  I  I  V  I  F  S  S  I  I  N  N  H  F  L  *  I  Q  H  F  N  L  S  D  D  Q  *  R  R  Q  N  F  H  Q  E  S  S  K  *  I  L  S  Y  I  K  G  V  Q  Y  V  D  N  Y  I  *  N  I  F  S  T  K  R  F  M  A  G  *  K  Y  I  Y  M  K  A  I  G  *  K  G  D  I  K  S  L  *  Q  Q  L  *  N  I  I  K  C  Y  V  I  S  I  I  S  N  K  P  C  S  R  A  T  N  C  C  C  I  I  L  E  F  S  F  S  V  C  I  W  K  K  K  T  N  L  L  C  E  I  L  I  N  I  F  Q  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33846" stop="34295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKLIFFFFLAIFFFQLDDWVLCRIYKKKNLGRTIEMMKVEEEELEAQNVSTTNNEIEVVGGPQTMKLPRICSLSHLLELDYFGSIPQLLSDNLLYDDQGYTMNNVNNTSNVDQVSSQQQNTNNITSNNCNIFFNYQQPLFVNPTFQSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="35181" PGL_stop="33989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35181" e_stop="35168"/>
            <exon e_start="34655" e_stop="33989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.857">
            <gDNA_exon_boundary e_start="35181" e_stop="35168" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35167" i_stop="34656" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="34655" e_stop="33989" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35181" stop="35168"/>
              <exon start="34655" stop="33989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397503" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35181" stop="35168"/>
              <exon start="34655" stop="34005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397385" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTCTA : ATAGAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAGAATCTATTTAGAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATTGTGTAACCTTGGTCATCATATAATAAATTGTCACTTAGTAATTGTGGAATTGATCCAAAATAATCCAATTCCAATAGATGTGACAATGAACAAATTCTTGGTAATTTCATTGTTTGTGGTCCACCAACAACTTCAATTTCATTATTTGTAGTACTCACATTT</gDNA_template>
            <first_frame> F  F  F  F  * :   *  N  T  E  K  Y  L  L  K  F  H  K  V  N  *  F  F  F  S  K  Y  K  L  R  N  *  I  L  K  *  Y  N  N  N  L  L  P  Y  Y  K  V  C  C  *  *  Y  *  *  H  N  I  *  L  Y  F  T  I  V  V  I  N  F  *  C  H  L  F  I  Q  *  P  S  Y  K  Y  I  F  T  R  P  *  T  S  S  L  K  K  Y  F  I  Y  N  Y  L  H  I  E  P  L  *  Y  N  *  E  S  I  *  K  I  L  D  E  N  S  V  S  A  I  D  H  H  *  D  *  N  V  G  F  T  K  S  G  C  *  *  L  K  K  I  L  Q  L  L  L  V  I  L  F  V  F  C  C  C  D  D  T  *  S  T  L  L  V  L  F  T  L  F  I  V  *  P  W  S  S  Y  N  K  L  S  L  S  N  C  G  I  D  P  K  *  S  N  S  N  R  C  D  N  E  Q  I  L  G  N  F  I  V  C  G  P  P  T  T  S  I  S  L  F  V  V  L  T  F </first_frame>
            <second_frame>  F  F  F  S   : N  R  I  L  K  N  I  Y  *  N  F  T  K  *  I  S  F  F  F  P  N  T  N  *  E  T  K  F  *  N  N  T  T  T  I  C  C  P  T  T  R  F  V  A  N  N  T  N  D  I  T  F  D  Y  I  L  Q  L  L  S  *  T  F  D  V  T  F  S  S  N  S  L  H  I  N  I  F  S  P  G  H  E  P  L  R  *  K  N  I  L  Y  I  I  I  Y  I  L  N  P  F  D  I  T  E  N  L  F  R  R  F  L  M  K  I  L  S  P  L  L  I  I  T  E  I  E  M  L  D  S  Q  K  V  V  V  D  N  *  R  K  Y  Y  N  Y  C  L  *  Y  Y  L  Y  F  V  V  V  M  I  L  D  P  H  Y  L  C  Y  S  H  Y  S  L  C  N  L  G  H  H  I  I  N  C  H  L  V  I  V  E  L  I  Q  N  N  P  I  P  I  D  V  T  M  N  K  F  L  V  I  S  L  F  V  V  H  Q  Q  L  Q  F  H  Y  L  *  Y  S  H   </second_frame>
            <third_frame>   F  F  F  L  :  I  E  Y  *  K  I  F  I  K  I  S  Q  S  K  L  V  F  F  F  Q  I  Q  T  E  K  L  N  S  K  I  I  Q  Q  Q  F  V  A  L  L  Q  G  L  L  L  I  I  L  M  T  *  H  L  I  I  F  Y  N  C  C  H  K  L  L  M  S  P  F  H  P  I  A  F  I  *  I  Y  F  H  P  A  M  N  L  F  V  E  K  I  F  Y  I  *  L  S  T  Y  *  T  P  L  I  *  L  R  I  Y  L  E  D  S  *  *  K  F  C  L  R  Y  *  S  S  L  R  L  K  C  W  I  H  K  K  W  L  L  I  I  E  E  N  I  T  I  I  A  C  N  I  I  C  I  L  L  L  *  *  Y  L  I  H  I  T  C  V  I  H  I  I  H  C  V  T  L  V  I  I  *  *  I  V  T  *  *  L  W  N  *  S  K  I  I  Q  F  Q  *  M  *  Q  *  T  N  S  W  *  F  H  C  L  W  S  T  N  N  F  N  F  I  I  C  S  T  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34218" stop="34000"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLYFVVVMILDPHYLCYSHYSLCNLGHHIINCHLVIVELIQNNPIPIDVTMNKFLVISLFVVHQQLQFHYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35109" e_stop="35085"/>
            <exon e_start="34655" e_stop="34151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.560"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.560">
            <gDNA_exon_boundary e_start="35109" e_stop="35085" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35084" i_stop="34656" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="34655" e_stop="34151" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35109" stop="35085"/>
              <exon start="34655" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376868" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTTTTTAAAATTGGTCTCTC : ATAGAATACTGAAAAATATTTATTAAAATTTCACAAAGTAAATTAGTTTTTTTTTTCCAAATACAAACTGAGAAACTAAATTCTAAAATAATACAACAACAATTTGTTGCCCTACTACAAGGTTTGTTGCTAATAATACTAATGACATAACATTTGATTATATTTTACAATTGTTGTCATAAACTTTTGATGTCACCTTTTCATCCAATAGCCTTCATATAAATATATTTTCACCCGGCCATGAACCTCTTCGTTGAAAAAATATTTTATATATAATTATCTACATATTGAACCCCTTTGATATAACTGAGAATCTATTTAGAAGATTCTTGATGAAAATTCTGTCTCCGCTATTGATCATCACTGAGATTGAAATGTTGGATTCACAAAAAGTGGTTGTTGATAATTGAAGAAAATATTACAATTATTGCTTGTAATATTATTTGTATTTTGTTGTTGTGATGATACTTGATCCACATTACTTGTGTTATTCACATTATTCATT</gDNA_template>
            <first_frame> F  N  F  L  K  L  V  S   : H  R  I  L  K  N  I  Y  *  N  F  T  K  *  I  S  F  F  F  P  N  T  N  *  E  T  K  F  *  N  N  T  T  T  I  C  C  P  T  T  R  F  V  A  N  N  T  N  D  I  T  F  D  Y  I  L  Q  L  L  S  *  T  F  D  V  T  F  S  S  N  S  L  H  I  N  I  F  S  P  G  H  E  P  L  R  *  K  N  I  L  Y  I  I  I  Y  I  L  N  P  F  D  I  T  E  N  L  F  R  R  F  L  M  K  I  L  S  P  L  L  I  I  T  E  I  E  M  L  D  S  Q  K  V  V  V  D  N  *  R  K  Y  Y  N  Y  C  L  *  Y  Y  L  Y  F  V  V  V  M  I  L  D  P  H  Y  L  C  Y  S  H  Y  S   </first_frame>
            <second_frame>  L  I  F  *  N  W  S  L  :  I  E  Y  *  K  I  F  I  K  I  S  Q  S  K  L  V  F  F  F  Q  I  Q  T  E  K  L  N  S  K  I  I  Q  Q  Q  F  V  A  L  L  Q  G  L  L  L  I  I  L  M  T  *  H  L  I  I  F  Y  N  C  C  H  K  L  L  M  S  P  F  H  P  I  A  F  I  *  I  Y  F  H  P  A  M  N  L  F  V  E  K  I  F  Y  I  *  L  S  T  Y  *  T  P  L  I  *  L  R  I  Y  L  E  D  S  *  *  K  F  C  L  R  Y  *  S  S  L  R  L  K  C  W  I  H  K  K  W  L  L  I  I  E  E  N  I  T  I  I  A  C  N  I  I  C  I  L  L  L  *  *  Y  L  I  H  I  T  C  V  I  H  I  I  H  </second_frame>
            <third_frame>   *  F  F  K  I  G  L  S :   *  N  T  E  K  Y  L  L  K  F  H  K  V  N  *  F  F  F  S  K  Y  K  L  R  N  *  I  L  K  *  Y  N  N  N  L  L  P  Y  Y  K  V  C  C  *  *  Y  *  *  H  N  I  *  L  Y  F  T  I  V  V  I  N  F  *  C  H  L  F  I  Q  *  P  S  Y  K  Y  I  F  T  R  P  *  T  S  S  L  K  K  Y  F  I  Y  N  Y  L  H  I  E  P  L  *  Y  N  *  E  S  I  *  K  I  L  D  E  N  S  V  S  A  I  D  H  H  *  D  *  N  V  G  F  T  K  S  G  C  *  *  L  K  K  I  L  Q  L  L  L  V  I  L  F  V  F  C  C  C  D  D  T  *  S  T  L  L  V  L  F  T  L  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0084G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="40448" PGL_stop="41171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40448" e_stop="40947"/>
            <exon e_start="41038" e_stop="41171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.865" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="40448" e_stop="40947" e_length="500"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.865">
            <gDNA_intron_boundary i_start="40948" i_stop="41037" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41038" e_stop="41171" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40448" stop="40947"/>
              <exon start="41038" stop="41171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40468" stop="40932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40472" stop="40947"/>
              <exon start="41038" stop="41137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40472" stop="40947"/>
              <exon start="41038" stop="41052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40488" stop="40947"/>
              <exon start="41038" stop="41142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40503" stop="40947"/>
              <exon start="41038" stop="41139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40518" stop="40830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCAACACAAAAATGACCACTTTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAGGTATGTATTGTTTTATATACGACTTAAATCAGCTTATCTTAAACAGGACGTGAAGAATGCCTTATCCAGGGTGCCTGAAAGTCGAAAAGAGTCTTATATTAAAACTGTCAATGAGCTTACTGATAACATGGCTGAG : TTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGCTCAAAGGTGAGTGAATGTTGT</gDNA_template>
            <first_frame> F  F  S  T  Q  K  *  P  L  S  Q  I  L  Q  L  C  S  I  Q  K  P  K  *  P  K  L  I  T  H  N  A  R  H  Y  P  K  S  N  L  T  Y  Q  L  M  N  K  T  S  H  V  D  A  N  S  S  R  L  F  *  S  L  H  *  H  *  A  Y  N  S  P  L  *  H  *  L  K  I  G  A  F  D  H  S  *  E  N  I  S  L  S  L  D  C  P  L  K  M  Q  *  H  E  F  V  K  Q  Q  M  D  Y  I  V  L  K  R  C  W  R  L  T  H  G  G  M  Y  C  F  I  Y  D  L  N  Q  L  I  L  N  R  T  *  R  M  P  Y  P  G  C  L  K  V  E  K  S  L  I  L  K  L  S  M  S  L  L  I  T  W  L  S :   L  I  T  T  F  E  H  Q  R  Y  M  N  L  V  Y  S  M  R  R  R  *  N  Q  L  M  N  W  W  D  Y  L  H  N  N  I  I  R  L  K  G  E  *  M  L  </first_frame>
            <second_frame>  F  F  Q  H  K  N  D  H  F  H  K  S  Y  N  F  V  P  S  K  N  Q  N  N  Q  N  S  S  H  T  M  Q  D  T  T  Q  N  P  I  *  L  I  N  *  *  T  K  L  L  M  *  T  Q  T  H  R  D  F  S  S  H  S  I  D  T  R  P  T  I  H  P  F  S  I  S  *  K  L  G  R  S  I  I  L  K  R  T  F  L  *  A  W  I  V  P  *  R  C  S  S  T  N  S  S  N  S  R  W  T  T  *  Y  *  R  D  V  G  D  *  L  M  E  V  C  I  V  L  Y  T  T  *  I  S  L  S  *  T  G  R  E  E  C  L  I  Q  G  A  *  K  S  K  R  V  L  Y  *  N  C  Q  *  A  Y  *  *  H  G  *   : V  *  L  L  H  S  N  T  K  G  I  *  I  S  C  I  L  *  E  D  V  E  I  N  *  *  I  G  G  I  T  C  I  I  I  S  S  G  S  K  V  S  E  C  C </second_frame>
            <third_frame>   F  F  N  T  K  M  T  T  F  T  N  P  T  T  L  F  H  P  K  T  K  I  T  K  T  H  H  T  Q  C  K  T  L  P  K  I  Q  S  N  L  S  T  N  E  Q  N  F  S  C  R  R  K  L  I  A  T  F  L  V  T  P  L  T  L  G  L  Q  F  T  P  L  A  L  A  E  N  W  G  V  R  S  F  L  R  E  H  F  F  E  P  G  L  S  P  E  D  A  V  A  R  I  R  Q  T  A  D  G  L  H  S  I  K  E  M  L  E  T  N  S  W  R  Y  V  L  F  Y  I  R  L  K  S  A  Y  L  K  Q  D  V  K  N  A  L  S  R  V  P  E  S  R  K  E  S  Y  I  K  T  V  N  E  L  T  D  N  M  A  E  :  F  D  Y  Y  I  R  T  P  K  V  Y  E  S  R  V  F  Y  E  K  T  L  K  S  I  D  E  L  V  G  L  L  A  *  *  Y  H  Q  A  Q  R  *  V  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40450" stop="40947"/>
                    <exon start="41038" stop="41136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFNTKMTTFTNPTTLFHPKTKITKTHHTQCKTLPKIQSNLSTNEQNFSCRRKLIATFLVTPLTLGLQFTPLALAENWGVRSFLREHFFEPGLSPEDAVARIRQTADGLHSIKEMLETNSWRYVLFYIRLKSAYLKQDVKNALSRVPESRKESYIKTVNELTDNMAEFDYYIRTPKVYESRVFYEKTLKSIDELVGLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40474" e_stop="40811"/>
            <exon e_start="40979" e_stop="41150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40474" e_stop="40811" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40812" i_stop="40978" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="40979" e_stop="41150" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40474" stop="40811"/>
              <exon start="40979" stop="41150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACAAATCCTACAACTTTGTTCCATCCAAAAACCAAAATAACCAAAACTCATCACACACAATGCAAGACACTACCCAAAATCCAATCTAACTTATCAACTAATGAACAAAACTTCTCATGTAGACGCAAACTCATCGCGACTTTTCTAGTCACTCCATTGACACTAGGCCTACAATTCACCCCTTTAGCATTAGCTGAAAATTGGGGCGTTCGATCATTCTTAAGAGAACATTTCTTTGAGCCTGGATTGTCCCCTGAAGATGCAGTAGCACGAATTCGTCAAACAGCAGATGGACTACATAGTATTAAAGAGATGTTGGAGACTAACTCATGGAG : AATTTTTCGAGGTTCTATTCAGTGTTATGGATATTTCTATGTATTTTCTTCGTCTGCAGTTTGATTACTACATTCGAACACCAAAGGTATATGAATCTCGTGTATTCTATGAGAAGACGTTGAAATCAATTGATGAATTGGTGGGATTACTTGCATAATAATATCATCAGGC</gDNA_template>
            <first_frame> F  T  N  P  T  T  L  F  H  P  K  T  K  I  T  K  T  H  H  T  Q  C  K  T  L  P  K  I  Q  S  N  L  S  T  N  E  Q  N  F  S  C  R  R  K  L  I  A  T  F  L  V  T  P  L  T  L  G  L  Q  F  T  P  L  A  L  A  E  N  W  G  V  R  S  F  L  R  E  H  F  F  E  P  G  L  S  P  E  D  A  V  A  R  I  R  Q  T  A  D  G  L  H  S  I  K  E  M  L  E  T  N  S  W  R :   I  F  R  G  S  I  Q  C  Y  G  Y  F  Y  V  F  S  S  S  A  V  *  L  L  H  S  N  T  K  G  I  *  I  S  C  I  L  *  E  D  V  E  I  N  *  *  I  G  G  I  T  C  I  I  I  S  S  G </first_frame>
            <second_frame>  S  Q  I  L  Q  L  C  S  I  Q  K  P  K  *  P  K  L  I  T  H  N  A  R  H  Y  P  K  S  N  L  T  Y  Q  L  M  N  K  T  S  H  V  D  A  N  S  S  R  L  F  *  S  L  H  *  H  *  A  Y  N  S  P  L  *  H  *  L  K  I  G  A  F  D  H  S  *  E  N  I  S  L  S  L  D  C  P  L  K  M  Q  *  H  E  F  V  K  Q  Q  M  D  Y  I  V  L  K  R  C  W  R  L  T  H  G   : E  F  F  E  V  L  F  S  V  M  D  I  S  M  Y  F  L  R  L  Q  F  D  Y  Y  I  R  T  P  K  V  Y  E  S  R  V  F  Y  E  K  T  L  K  S  I  D  E  L  V  G  L  L  A  *  *  Y  H  Q   </second_frame>
            <third_frame>   H  K  S  Y  N  F  V  P  S  K  N  Q  N  N  Q  N  S  S  H  T  M  Q  D  T  T  Q  N  P  I  *  L  I  N  *  *  T  K  L  L  M  *  T  Q  T  H  R  D  F  S  S  H  S  I  D  T  R  P  T  I  H  P  F  S  I  S  *  K  L  G  R  S  I  I  L  K  R  T  F  L  *  A  W  I  V  P  *  R  C  S  S  T  N  S  S  N  S  R  W  T  T  *  Y  *  R  D  V  G  D  *  L  M  E  :  N  F  S  R  F  Y  S  V  L  W  I  F  L  C  I  F  F  V  C  S  L  I  T  T  F  E  H  Q  R  Y  M  N  L  V  Y  S  M  R  R  R  *  N  Q  L  M  N  W  W  D  Y  L  H  N  N  I  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40474" stop="40811"/>
                    <exon start="40979" stop="41042"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTNPTTLFHPKTKITKTHHTQCKTLPKIQSNLSTNEQNFSCRRKLIATFLVTPLTLGLQFTPLALAENWGVRSFLREHFFEPGLSPEDAVARIRQTADGLHSIKEMLETNSWRIFRGSIQCYGYFYVFSSSAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="42308" PGL_stop="41358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42308" e_stop="42015"/>
            <exon e_start="41923" e_stop="41800"/>
            <exon e_start="41706" e_stop="41358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.358" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42308" e_stop="42015" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.358">
            <gDNA_intron_boundary i_start="42014" i_stop="41924" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41923" e_stop="41800" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41799" i_stop="41707" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41706" e_stop="41358" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42308" stop="42015"/>
              <exon start="41923" stop="41800"/>
              <exon start="41706" stop="41377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42307" stop="42015"/>
              <exon start="41923" stop="41800"/>
              <exon start="41706" stop="41571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42194" stop="42015"/>
              <exon start="41923" stop="41800"/>
              <exon start="41706" stop="41358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCATCACACTTGACATACAAATCATAACAACAAAATTTCATTCTAGTTTCAAAGTTTGAGCTAAAAGGAAAAAATGAAGGCAGTATCAATTGAAACTGGAGAGGGATCAAAGGCCAAAAGAGTTCATGGAGTGAACAGAGGAATCTCTGTATTTGATCTTGTTTTACGTATCGTTGCACTTGTTGGAACCTTAGCAAGTGCTGTGGCAATGGGTACTGCAGATCAAGCACTTCCATTCAGTACACAGATTGTAAATTTTGAAGCTCAGTATGATGATATCGACTCGTTCAA : GTTCTTCGTGGTTTCGAATTCTATAGTTTGTGTATATCTTGCACTTTCTATCACTATTTCAATCTTTCACATTATCAGAAGTAGAGCAGGAAAGAGCAGAGTTTTGCTCATTGTTCTAGACGCG : ATAATGCTGGTTTTCCTCACATCTGGAGCATCAGCAGCAGCCGCGATTGTGTATTTGGCACACAATGGCAACACTTCAACTAACTGGTTTTCGATATGCCAACAGTATACAGATTTCTGTCAACGTTCTGCTGGATCCCTTATCGGTTCTTTTGGTGCAATGGCCTTGATGGTTATACTTATAATTTTGTCATCTATCGCTTTATCAAGGCGCTGAAGATGTTGGCTACACTAGCAATTGCTAGCCTTTGTGTGTGTATTGTGTTTGTAAATGTTAGTTTCATCAGTTGCATTTCATTGTATCAAGATTTTCATCAGTTGTATCACATAATGAAAAGATTTCCTCCTTA</gDNA_template>
            <first_frame> F  A  S  H  L  T  Y  K  S  *  Q  Q  N  F  I  L  V  S  K  F  E  L  K  G  K  N  E  G  S  I  N  *  N  W  R  G  I  K  G  Q  K  S  S  W  S  E  Q  R  N  L  C  I  *  S  C  F  T  Y  R  C  T  C  W  N  L  S  K  C  C  G  N  G  Y  C  R  S  S  T  S  I  Q  Y  T  D  C  K  F  *  S  S  V  *  *  Y  R  L  V  Q  :  V  L  R  G  F  E  F  Y  S  L  C  I  S  C  T  F  Y  H  Y  F  N  L  S  H  Y  Q  K  *  S  R  K  E  Q  S  F  A  H  C  S  R  R   : D  N  A  G  F  P  H  I  W  S  I  S  S  S  R  D  C  V  F  G  T  Q  W  Q  H  F  N  *  L  V  F  D  M  P  T  V  Y  R  F  L  S  T  F  C  W  I  P  Y  R  F  F  W  C  N  G  L  D  G  Y  T  Y  N  F  V  I  Y  R  F  I  K  A  L  K  M  L  A  T  L  A  I  A  S  L  C  V  C  I  V  F  V  N  V  S  F  I  S  C  I  S  L  Y  Q  D  F  H  Q  L  Y  H  I  M  K  R  F  P  P   </first_frame>
            <second_frame>  S  H  H  T  *  H  T  N  H  N  N  K  I  S  F  *  F  Q  S  L  S  *  K  E  K  M  K  A  V  S  I  E  T  G  E  G  S  K  A  K  R  V  H  G  V  N  R  G  I  S  V  F  D  L  V  L  R  I  V  A  L  V  G  T  L  A  S  A  V  A  M  G  T  A  D  Q  A  L  P  F  S  T  Q  I  V  N  F  E  A  Q  Y  D  D  I  D  S  F  K :   F  F  V  V  S  N  S  I  V  C  V  Y  L  A  L  S  I  T  I  S  I  F  H  I  I  R  S  R  A  G  K  S  R  V  L  L  I  V  L  D  A  :  I  M  L  V  F  L  T  S  G  A  S  A  A  A  A  I  V  Y  L  A  H  N  G  N  T  S  T  N  W  F  S  I  C  Q  Q  Y  T  D  F  C  Q  R  S  A  G  S  L  I  G  S  F  G  A  M  A  L  M  V  I  L  I  I  L  S  S  I  A  L  S  R  R  *  R  C  W  L  H  *  Q  L  L  A  F  V  C  V  L  C  L  *  M  L  V  S  S  V  A  F  H  C  I  K  I  F  I  S  C  I  T  *  *  K  D  F  L  L  </second_frame>
            <third_frame>   R  I  T  L  D  I  Q  I  I  T  T  K  F  H  S  S  F  K  V  *  A  K  R  K  K  *  R  Q  Y  Q  L  K  L  E  R  D  Q  R  P  K  E  F  M  E  *  T  E  E  S  L  Y  L  I  L  F  Y  V  S  L  H  L  L  E  P  *  Q  V  L  W  Q  W  V  L  Q  I  K  H  F  H  S  V  H  R  L  *  I  L  K  L  S  M  M  I  S  T  R  S   : S  S  S  W  F  R  I  L  *  F  V  Y  I  L  H  F  L  S  L  F  Q  S  F  T  L  S  E  V  E  Q  E  R  A  E  F  C  S  L  F  *  T  R :   *  C  W  F  S  S  H  L  E  H  Q  Q  Q  P  R  L  C  I  W  H  T  M  A  T  L  Q  L  T  G  F  R  Y  A  N  S  I  Q  I  S  V  N  V  L  L  D  P  L  S  V  L  L  V  Q  W  P  *  W  L  Y  L  *  F  C  H  L  S  L  Y  Q  G  A  E  D  V  G  Y  T  S  N  C  *  P  L  C  V  Y  C  V  C  K  C  *  F  H  Q  L  H  F  I  V  S  R  F  S  S  V  V  S  H  N  E  K  I  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42241" stop="42015"/>
                    <exon start="41923" stop="41800"/>
                    <exon start="41706" stop="41491"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKMKAVSIETGEGSKAKRVHGVNRGISVFDLVLRIVALVGTLASAVAMGTADQALPFSTQIVNFEAQYDDIDSFKFFVVSNSIVCVYLALSITISIFHIIRSRAGKSRVLLIVLDAIMLVFLTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVILIILSSIALSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="45551" PGL_stop="48755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45551" e_stop="45630"/>
            <exon e_start="46970" e_stop="47119"/>
            <exon e_start="47658" e_stop="47726"/>
            <exon e_start="47852" e_stop="47899"/>
            <exon e_start="48004" e_stop="48057"/>
            <exon e_start="48291" e_stop="48354"/>
            <exon e_start="48452" e_stop="48755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.904" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.920" e_score="0.973"/>
          <exon-intron don_prob="0.947" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.485" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.739" e_score="0.922"/>
          <exon-only e_score="0.868"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="45551" e_stop="45630" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.904">
            <gDNA_intron_boundary i_start="45631" i_stop="46969" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="46970" e_stop="47119" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.920">
            <gDNA_intron_boundary i_start="47120" i_stop="47657" i_length="538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47658" e_stop="47726" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.940">
            <gDNA_intron_boundary i_start="47727" i_stop="47851" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="47852" e_stop="47899" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47900" i_stop="48003" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.963">
            <gDNA_exon_boundary e_start="48004" e_stop="48057" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.485">
            <gDNA_intron_boundary i_start="48058" i_stop="48290" i_length="233"/>
          </intron>
          <exon e_serial="6" e_score="0.922">
            <gDNA_exon_boundary e_start="48291" e_stop="48354" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.739">
            <gDNA_intron_boundary i_start="48355" i_stop="48451" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="0.868">
            <gDNA_exon_boundary e_start="48452" e_stop="48755" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45551" stop="45630"/>
              <exon start="46970" stop="47119"/>
              <exon start="47658" stop="47726"/>
              <exon start="47852" stop="47899"/>
              <exon start="48004" stop="48057"/>
              <exon start="48291" stop="48354"/>
              <exon start="48452" stop="48504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45589" stop="45630"/>
              <exon start="46970" stop="47119"/>
              <exon start="47658" stop="47726"/>
              <exon start="47852" stop="47899"/>
              <exon start="48004" stop="48057"/>
              <exon start="48291" stop="48354"/>
              <exon start="48452" stop="48755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTTTGCTTCGTCTTTCGTTCTGTTCCATATTTCTGGTAACTCATCGGTTTCATCCACCTTCACTTCAGATTCCAG : AAACAAGCACTCAAAATGTCGAACCCTTCAGATGAAAGTGGCAAGGAACCAAACCTTGGTAATGATCCTCCTAAAGGTGAAGTAAATGATGCCCTTCCTGCAGAAGATCCAAAGGGTGCAGAAGAAGAAAGCCAAGATCCATCTCTAGCG : GAGCAGGAGGAACTAATGAAGAAAAAATATGGTGGATTAGTGAAAAAGAAACCTCCATTGATAACTAAG : GACCATGAACGTGCTTTTTTCGATTCTGCAGACTGGGCACTAGGAAAG : CAAGGGGGACACAAGGCCAAAACACCTGCTGAGGCACTTCGCCCGAAATTGGAG : CCGACACCACATCAGCAACTTCGTACTCGTCTCTCAGCTTCTAAACTGACAGATACTGGTGAAG : ATGGTAGCAACAACGATCTTGACCAGCTAGATGATGAGCAGAGCGGAATACCAGCAGCGGATGGTGAGAATAAGTCTTAGATCAGAGGCAGCTGGACCAAAACATTCTTGAGCATCCTCATCAAAGTTCCCTGCTGAATTGAACTGAAAGTGGTGTTGTAAATCAGGCTAGCTACTTATATAGAGGTAAAAAAGAAGAATAATTGCTCATGTGGCGAATTTTTGTACTGAGATTAGATTTGTTGTCCTATACTGAGCTGATTTCCTTGCATAAAATTCAGAAAACTTCCTTGTCTGGCTGTGCT</gDNA_template>
            <first_frame> V  Y  F  A  S  S  F  V  L  F  H  I  S  G  N  S  S  V  S  S  T  F  T  S  D  S  R :   N  K  H  S  K  C  R  T  L  Q  M  K  V  A  R  N  Q  T  L  V  M  I  L  L  K  V  K  *  M  M  P  F  L  Q  K  I  Q  R  V  Q  K  K  K  A  K  I  H  L  *  R :   S  R  R  N  *  *  R  K  N  M  V  D  *  *  K  R  N  L  H  *  *  L  R :   T  M  N  V  L  F  S  I  L  Q  T  G  H  *  E  S :   K  G  D  T  R  P  K  H  L  L  R  H  F  A  R  N  W  S :   R  H  H  I  S  N  F  V  L  V  S  Q  L  L  N  *  Q  I  L  V  K  :  M  V  A  T  T  I  L  T  S  *  M  M  S  R  A  E  Y  Q  Q  R  M  V  R  I  S  L  R  S  E  A  A  G  P  K  H  S  *  A  S  S  S  K  F  P  A  E  L  N  *  K  W  C  C  K  S  G  *  L  L  I  *  R  *  K  R  R  I  I  A  H  V  A  N  F  C  T  E  I  R  F  V  V  L  Y  *  A  D  F  L  A  *  N  S  E  N  F  L  V  W  L  C  </first_frame>
            <second_frame>  F  I  L  L  R  L  S  F  C  S  I  F  L  V  T  H  R  F  H  P  P  S  L  Q  I  P   : E  T  S  T  Q  N  V  E  P  F  R  *  K  W  Q  G  T  K  P  W  *  *  S  S  *  R  *  S  K  *  C  P  S  C  R  R  S  K  G  C  R  R  R  K  P  R  S  I  S  S   : G  A  G  G  T  N  E  E  K  I  W  W  I  S  E  K  E  T  S  I  D  N  *   : G  P  *  T  C  F  F  R  F  C  R  L  G  T  R  K   : A  R  G  T  Q  G  Q  N  T  C  *  G  T  S  P  E  I  G   : A  D  T  T  S  A  T  S  Y  S  S  L  S  F  *  T  D  R  Y  W  *  R :   W  *  Q  Q  R  S  *  P  A  R  *  *  A  E  R  N  T  S  S  G  W  *  E  *  V  L  D  Q  R  Q  L  D  Q  N  I  L  E  H  P  H  Q  S  S  L  L  N  *  T  E  S  G  V  V  N  Q  A  S  Y  L  Y  R  G  K  K  E  E  *  L  L  M  W  R  I  F  V  L  R  L  D  L  L  S  Y  T  E  L  I  S  L  H  K  I  Q  K  T  S  L  S  G  C  A </second_frame>
            <third_frame>   L  F  C  F  V  F  R  S  V  P  Y  F  W  *  L  I  G  F  I  H  L  H  F  R  F  Q  :  K  Q  A  L  K  M  S  N  P  S  D  E  S  G  K  E  P  N  L  G  N  D  P  P  K  G  E  V  N  D  A  L  P  A  E  D  P  K  G  A  E  E  E  S  Q  D  P  S  L  A  :  E  Q  E  E  L  M  K  K  K  Y  G  G  L  V  K  K  K  P  P  L  I  T  K  :  D  H  E  R  A  F  F  D  S  A  D  W  A  L  G  K  :  Q  G  G  H  K  A  K  T  P  A  E  A  L  R  P  K  L  E  :  P  T  P  H  Q  Q  L  R  T  R  L  S  A  S  K  L  T  D  T  G  E   : D  G  S  N  N  D  L  D  Q  L  D  D  E  Q  S  G  I  P  A  A  D  G  E  N  K  S  *  I  R  G  S  W  T  K  T  F  L  S  I  L  I  K  V  P  C  *  I  E  L  K  V  V  L  *  I  R  L  A  T  Y  I  E  V  K  K  K  N  N  C  S  C  G  E  F  L  Y  *  D  *  I  C  C  P  I  L  S  *  F  P  C  I  K  F  R  K  L  P  C  L  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45595" stop="45630"/>
                    <exon start="46970" stop="47119"/>
                    <exon start="47658" stop="47726"/>
                    <exon start="47852" stop="47899"/>
                    <exon start="48004" stop="48057"/>
                    <exon start="48291" stop="48354"/>
                    <exon start="48452" stop="48531"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGFIHLHFRFQKQALKMSNPSDESGKEPNLGNDPPKGEVNDALPAEDPKGAEEESQDPSLAEQEELMKKKYGGLVKKKPPLITKDHERAFFDSADWALGKQGGHKAKTPAEALRPKLEPTPHQQLRTRLSASKLTDTGEDGSNNDLDQLDDEQSGIPAADGENKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="55843" PGL_stop="49183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55843" e_stop="55687"/>
            <exon e_start="55574" e_stop="55547"/>
            <exon e_start="54207" e_stop="53609"/>
            <exon e_start="52473" e_stop="52078"/>
            <exon e_start="51980" e_stop="51726"/>
            <exon e_start="51573" e_stop="51316"/>
            <exon e_start="51126" e_stop="51062"/>
            <exon e_start="50944" e_stop="50869"/>
            <exon e_start="50691" e_stop="49736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="55843" e_stop="55687" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55574" e_stop="55547" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54207" e_stop="53609" e_length="599"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52473" e_stop="52078" e_length="396"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51980" e_stop="51726" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51573" e_stop="51316" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51126" e_stop="51062" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50944" e_stop="50869" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.935">
            <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="50691" e_stop="49736" e_length="956"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55843" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55703" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53888" stop="53609"/>
              <exon start="52473" stop="52189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53792" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53702" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53669" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53638" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52465" stop="52245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52461" stop="52154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52340" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52303" stop="52078"/>
              <exon start="51980" stop="51959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52085" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51543" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50601" stop="50162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGTACAACACTTCTAGTAAGACCATCCATGGTCAAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACT : TGATACAGGTTTGCTAGACAAACAAAAG : GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG : ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG : ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG : ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG : GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG : GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG : CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATT</gDNA_template>
            <first_frame> *  V  Q  H  F  *  *  D  H  P  W  S  K  N  F  L  Q  P  N  P  R  S  F  P  H  L  A  N  F  F  I  F  S  A  V  F  S  T  L  N  T  T  D  P  R  I  S  A  F  T  E  H   : L  I  Q  V  C  *  T  N  K  R :   V  A  H  S  A  P  *  H  G  R  P  E  E  *  L  R  *  E  N  A  I  G  I  R  L  F  Q  E  *  W  K  *  E  E  D  S  N  *  *  E  G  I  K  F  H  W  T  R  G  Y  C  F  S  L  F  M  P  H  R  K  N  W  K  Y  H  W  S  W  W  G  H  C  K  T  I  E  D  *  N  *  F  K  D  *  D  *  *  D  H  T  W  L  R  G  A  C  C  N  Y  L  *  W  K  *  R  N  *  Y  L  *  R  Y  W  *  P  D  F  T  C  S  R  C  S  I  *  G  A  *  Q  S  P  C  *  R  A  A  Y  G  R  R  S  G  G  S  S  D  Y  C  K  D  D  C  P  I  R  S  D  R  L  C  D  R  E  C  W  T  S  D  P  E  F  T  K  *  N  R  C  A  D  S  G  V  K  Q  *  A  L  A  P  L  C  S  K  L  G  *  A  S  P   : D  N  R  *  S  C  S  C  *  E  S  T  L  S  S  S  S  T  P  P  *  *  S  I  K  V  P  T  S  V  A  V  V  T  Q  H  I  *  V  W  C  W  T  C  E  S  S  C  W  *  P  S  H  G  C  D  I  I  D  G  S  L  R  K  L  Q  K  *  W  *  K  *  I  V  F  C  K  G  V  C  S  S  F  G  L  S  N  *  E  C  R  S  C  N  W  Q  R  W  R  S  Y  Q  T  A  K  T  G  I  R  C  I  Y  *  S  R  *  C  C  G  *  G  R  *  L  H  Y  I  C  I  S  K  G   : D  I  *  R  S  I  P  Y  H  R  C  N  N  A  F  A  T  K  K  *  *  E  N  *  K  R  I  R  *  C  Y  S  Y  D  S  P  A  C  T  *  F  T  S  W  M  P  Y  W  *  R  W  F  H  Y  H  *  D  A  E  F  H  K  G  K  H  P  R  S  F  E  G  K  S  S  K  S  G  I  R  R  *  R  D  G  A   : D  Y  W  R  C  *  C  C  C  Q  C  V  I  A  S  T  Y  A  V  E  G  Q  C  I  *  D  G  G  I  F  S  C  I  F  S  W  P  F  L  C  P  H  A  C  K  R  A  R  W  L  K  I  W  *  P  *  *  S  I  T  S  A  W  L  F  I  L  F  R  W  T  *  L  Q  *  F  V  S  K  G  *  L  W  W  L  T   : G  W  *  W  R  Q  L  C  T  I  W  R  L  F  L  W  A  T  *  *  F  R  :  G  F  Q  P  *  S  F  C  L  W  K  I  L  W  I  L  G  C  R  G  L  L  A  A  G   : A  I  I  S  D  A  C  S  R  P  L  P  D  P  I  D  E  A  S  S  L  R  T  E  D  Q  T  S  K  I  E  K  L  V  A  I  L  A  L  V  F  L  F  L  R  C  Y  Q  N  I  Y  C  N  E  T  T  P  L  S  H  *  R  P  F  V  P  K  I  P  L  L  *  Q  Y  C  V  A  D  *  V  M  T  V  *  Y  G  G  S  S  L  L  C  V  C  L  F  V  F  L  S  T  F  V  T  *  W  C  H  F  Y  C  *  P  V  M  L  Q  D  *  N  S  V  A  F  S  C  I  D  F  F  H  V  F  S  T  A  F  Q  *  L  N  K  S  S  R  K  S  G  F  C  I  S  G  G  K  N  V  M  F  S  *  Q  L  F  S  *  *  S  C  I  *  H  D  S  C  Y  W  V  L  S  S  *  T  K  P  L  L  L  V  A  S  T  E  L  L  R  D  Q  S  I  A  N  Y  D  Q  N  S  H  S  R  L  H  A  M  V  Y  T  K  K  A  D  F  Y  L  S  S  V  *  F  S  S  L  A  S  L  V  *  D  V  L  G  I  E  N  C  F  S  D  S  *  V  G  T  N  I  I  S  E  L  C  Y  M  W  *  T  C  V  L  S  C  *  Y  S  C  S  L  G  L  K  E  M  T  A  F  L  W  P  L  G  N  D  G  V  G  H  C  L  M  S  D  H  F  M  *  S  I  L  Q  D  *  *  K  I  *  F  L  *  *  I </first_frame>
            <second_frame>  R  Y  N  T  S  S  K  T  I  H  G  Q  K  T  F  Y  S  Q  T  L  E  A  S  L  I  W  Q  I  S  L  Y  F  Q  Q  Y  L  V  L  *  T  Q  Q  T  H  G  F  L  L  S  Q  N  T  :  *  Y  R  F  A  R  Q  T  K   : G  W  H  I  Q  L  L  D  M  A  G  Q  R  N  N  Y  G  K  R  M  Q  S  E  S  D  Y  S  R  S  D  G  S  K  R  R  T  P  T  D  E  K  E  S  N  S  I  G  P  E  D  T  V  F  R  Y  L  C  P  T  G  K  I  G  S  I  I  G  V  G  G  D  I  A  K  Q  L  R  T  E  T  N  S  K  I  R  I  S  E  T  I  P  G  C  E  E  R  V  V  T  I  Y  S  G  S  E  E  T  N  I  S  E  D  T  G  D  L  I  S  P  A  Q  D  A  L  F  R  V  H  D  R  V  L  A  E  E  L  R  M  D  E  D  L  E  D  H  Q  I  T  V  R  M  I  V  P  S  D  Q  I  G  C  V  I  G  N  A  G  Q  V  I  Q  N  L  R  S  E  T  G  A  Q  I  R  V  L  S  S  E  H  L  P  P  C  A  L  N  S  D  E  L  L  Q  :  I  T  G  E  V  A  V  V  K  R  A  L  Y  Q  V  A  A  R  L  H  D  N  P  S  R  S  Q  H  Q  L  L  S  S  P  S  I  Y  R  S  G  A  G  L  V  N  P  H  A  G  S  Q  V  M  G  V  T  S  L  M  G  P  Y  A  S  Y  K  S  D  G  R  S  R  S  S  S  V  K  E  F  A  V  R  L  V  C  P  I  E  N  V  G  A  V  I  G  K  G  G  G  V  I  K  Q  L  R  Q  E  S  G  A  S  I  K  V  D  S  A  A  A  E  G  D  D  C  I  I  F  V  S  A  K  E  :  T  F  E  D  Q  S  P  T  I  D  A  T  M  R  L  Q  P  R  S  S  E  K  T  E  K  E  S  G  D  A  I  L  T  T  R  L  L  V  P  S  S  R  V  G  C  L  I  G  K  G  G  S  I  I  T  E  M  R  N  S  T  R  A  S  I  R  V  L  S  K  E  N  H  P  K  V  A  S  V  D  D  E  M  V  Q  :  I  T  G  D  A  N  V  A  A  N  A  L  L  Q  V  L  M  R  L  R  A  N  A  F  E  M  E  G  S  F  P  A  F  S  P  G  L  S  Y  A  P  M  P  A  S  V  P  D  G  S  R  Y  G  N  R  D  N  R  S  R  R  H  G  Y  S  S  Y  S  G  G  H  D  Y  S  D  L  S  P  R  D  S  Y  G  G  S  Q  :  V  G  N  G  G  N  Y  A  P  Y  G  V  Y  S  S  G  R  P  S  S  S  G :   V  S  S  H  N  P  S  A  Y  G  K  S  Y  G  Y  *  G  V  E  G  Y  *  Q  P  E  :  L  S  S  P  M  P  V  P  D  H  C  P  T  L  L  T  K  P  P  A  *  E  Q  R  T  R  R  A  R  *  R  N  L  W  P  S  L  P  *  Y  F  C  F  L  G  V  T  R  I  Y  I  V  M  K  Q  H  L  L  V  I  E  G  L  L  Y  P  K  Y  L  C  F  S  S  I  V  *  Q  T  K  S  *  Q  F  D  M  V  V  L  L  Y  F  V  F  V  C  L  C  S  *  V  P  L  *  R  S  G  V  T  F  T  V  D  Q  L  C  Y  R  I  E  T  L  L  L  S  L  A  S  I  F  F  M  F  S  R  Q  L  S  S  N  *  T  K  V  Q  E  S  Q  V  S  A  F  Q  E  V  K  M  S  C  F  L  D  S  F  S  V  S  D  L  V  Y  D  M  I  P  A  I  G  F  Y  P  R  E  R  N  P  F  C  *  L  L  A  Q  S  F  *  E  I  N  Q  *  L  I  M  I  K  I  H  I  H  V  C  M  L  W  Y  T  L  R  R  Q  I  S  T  *  A  V  F  N  F  L  L  L  L  L  *  C  R  T  Y  L  G  L  R  I  A  F  P  I  V  E  *  A  R  I  *  F  Q  S  F  A  I  C  G  K  P  V  S  Y  L  V  N  I  H  A  P  L  A  S  R  K  *  R  R  S  F  G  L  *  E  M  M  V  L  V  T  A  *  C  L  I  I  L  C  D  R  F  C  R  I  D  R  K  F  S  S  Y  D  K   </second_frame>
            <third_frame>   G  T  T  L  L  V  R  P  S  M  V  K  K  L  F  T  A  K  P  *  K  L  P  S  F  G  K  F  L  Y  I  F  S  S  I  *  Y  F  E  H  N  R  P  T  D  F  C  F  H  R  T  L :   D  T  G  L  L  D  K  Q  K  :  G  G  T  F  S  S  L  T  W  Q  A  R  G  I  T  T  V  R  E  C  N  R  N  P  T  I  P  G  V  M  E  V  R  G  G  L  Q  L  M  R  R  N  Q  I  P  L  D  Q  R  I  L  F  F  V  I  Y  A  P  Q  E  K  L  E  V  S  L  E  L  V  G  T  L  Q  N  N  *  G  L  K  L  I  Q  R  L  G  L  V  R  P  Y  L  A  A  R  S  V  L  *  L  F  I  V  E  V  K  K  L  I  S  L  K  I  L  V  T  *  F  H  L  L  K  M  L  Y  L  G  C  M  T  E  S  L  L  K  S  C  V  W  T  K  I  W  R  I  I  R  L  L  *  G  *  L  S  H  Q  I  R  *  V  V  *  *  G  M  L  D  K  *  S  R  I  Y  E  V  K  Q  V  R  R  F  G  C  *  A  V  S  T  C  P  L  V  L  *  T  R  M  S  F  S  R :   *  P  V  K  L  Q  L  L  R  E  H  F  I  K  *  Q  H  A  S  M  I  I  H  Q  G  P  N  I  S  C  C  R  H  P  A  Y  I  G  L  V  L  D  L  *  I  L  M  L  V  A  K  S  W  V  *  H  H  *  W  V  L  T  Q  V  T  K  V  M  V  E  V  D  R  L  L  *  R  S  L  Q  F  V  W  F  V  Q  L  R  M  *  E  L  *  L  A  K  V  E  E  L  S  N  S  *  D  R  N  Q  V  H  L  L  K  S  I  V  L  R  L  R  E  M  I  A  L  Y  L  Y  Q  Q  R  R :   H  L  K  I  N  P  L  P  S  M  Q  Q  C  V  C  N  Q  E  V  V  R  K  L  K  K  N  P  V  M  L  F  L  R  L  A  C  L  Y  L  V  H  E  L  D  A  L  L  V  K  V  V  P  L  S  L  R  C  G  I  P  Q  G  Q  A  S  A  F  F  R  R  K  I  I  Q  K  W  H  P  *  M  T  R  W  C  R :   L  L  E  M  L  M  L  L  P  M  R  Y  C  K  Y  L  C  G  *  G  P  M  H  L  R  W  R  D  L  F  L  H  F  L  L  A  F  L  M  P  P  C  L  Q  A  C  Q  M  A  Q  D  M  V  T  V  I  I  D  H  V  G  M  V  I  H  L  I  Q  V  D  M  I  T  V  I  C  L  Q  G  I  V  M  V  A  H  R :   L  V  M  E  A  I  M  H  H  M  A  F  I  P  L  G  D  L  V  V  Q   : G  F  P  A  I  I  L  L  P  M  E  N  L  M  D  T  R  V  *  R  V  I  S  S  R  S :   Y  H  L  R  C  L  F  Q  T  I  A  R  P  Y  *  R  S  L  Q  P  K  N  R  G  P  D  E  Q  D  R  E  T  C  G  H  P  C  P  S  I  S  V  S  *  V  L  P  E  Y  I  L  *  *  N  N  T  S  *  S  L  K  A  F  C  T  Q  N  T  F  A  L  A  V  L  C  S  R  L  S  H  D  S  L  I  W  W  F  F  F  T  L  C  L  F  V  C  V  L  K  Y  L  C  D  V  V  V  S  L  L  L  L  T  S  Y  A  T  G  L  K  L  C  C  F  L  L  H  R  F  F  S  C  F  L  D  S  F  P  V  I  E  Q  K  F  K  K  V  R  F  L  H  F  R  R  *  K  C  H  V  F  L  T  A  F  Q  L  V  I  L  Y  M  T  *  F  L  L  L  G  S  I  L  V  N  E  T  P  S  V  S  C  *  H  R  A  F  K  R  S  I  N  S  *  L  *  S  K  F  T  F  T  F  A  C  Y  G  I  H  *  E  G  R  F  L  L  E  Q  C  L  I  F  F  S  C  F  S  S  V  G  R  T  W  D  *  E  L  L  F  R  *  L  S  R  H  E  Y  N  F  R  A  L  L  Y  V  V  N  L  C  L  I  L  L  I  F  M  L  P  W  P  Q  G  N  D  G  V  P  L  A  F  R  K  *  W  C  W  S  L  L  D  V  *  S  F  Y  V  I  D  S  A  G  L  I  E  N  L  V  L  M  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55571" stop="55547"/>
                    <exon start="54207" stop="53609"/>
                    <exon start="52473" stop="52078"/>
                    <exon start="51980" stop="51726"/>
                    <exon start="51573" stop="51316"/>
                    <exon start="51126" stop="51062"/>
                    <exon start="50944" stop="50896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFARQTKGWHIQLLDMAGQRNNYGKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETNISEDTGDLISPAQDALFRVHDRVLAEELRMDEDLEDHQITVRMIVPSDQIGCVIGNAGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEVAVVKRALYQVAARLHDNPSRSQHQLLSSPSIYRSGAGLVNPHAGSQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPIENVGAVIGKGGGVIKQLRQESGASIKVDSAAAEGDDCIIFVSAKETFEDQSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIITEMRNSTRASIRVLSKENHPKVASVDDEMVQITGDANVAANALLQVLMRLRANAFEMEGSFPAFSPGLSYAPMPASVPDGSRYGNRDNRSRRHGYSSYSGGHDYSDLSPRDSYGGSQVGNGGNYAPYGVYSSGRPSSSGVSSHNPSAYGKSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50516" stop="50229"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKAFCTQNTFALAVLCSRLSHDSLIWWFFFTLCLFVCVLKYLCDVVVSLLLLTSYATGLKLCCFLLHRFFSCFLDSFPVIEQKFKKVRFLHFRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55843" e_stop="55687"/>
            <exon e_start="55574" e_stop="55547"/>
            <exon e_start="54207" e_stop="53609"/>
            <exon e_start="52473" e_stop="52078"/>
            <exon e_start="51980" e_stop="51726"/>
            <exon e_start="51573" e_stop="51316"/>
            <exon e_start="51126" e_stop="51062"/>
            <exon e_start="50944" e_stop="50869"/>
            <exon e_start="50691" e_stop="49905"/>
            <exon e_start="49827" e_stop="49183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.255" e_score="0.998"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="55843" e_stop="55687" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55574" e_stop="55547" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54207" e_stop="53609" e_length="599"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52473" e_stop="52078" e_length="396"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52077" i_stop="51981" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51980" e_stop="51726" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51725" i_stop="51574" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51573" e_stop="51316" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51126" e_stop="51062" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50944" e_stop="50869" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.935">
            <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="50691" e_stop="49905" e_length="787"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.255">
            <gDNA_intron_boundary i_start="49904" i_stop="49828" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="49827" e_stop="49183" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55843" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55703" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53888" stop="53609"/>
              <exon start="52473" stop="52189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53792" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53702" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53669" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53638" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51980" stop="51940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52465" stop="52245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52464" stop="52078"/>
              <exon start="51980" stop="51837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52461" stop="52154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52340" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52303" stop="52078"/>
              <exon start="51980" stop="51959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52085" stop="52078"/>
              <exon start="51980" stop="51726"/>
              <exon start="51573" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51543" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50601" stop="50162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49930" stop="49905"/>
              <exon start="49827" stop="49341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317811" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49606" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGTACAACACTTCTAGTAAGACCATCCATGGTCAAAAAACTTTTTACAGCCAAACCCTAGAAGCTTCCCTCATTTGGCAAATTTCTTTATATTTTCAGCAGTATTTAGTACTTTGAACACAACAGACCCACGGATTTCTGCTTTCACAGAACACT : TGATACAGGTTTGCTAGACAAACAAAAG : GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG : ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG : ACATTTGAAGATCAATCCCCTACCATCGATGCAACAATGCGTTTGCAACCAAGAAGTAGTGAGAAAACTGAAAAAGAATCCGGTGATGCTATTCTTACGACTCGCCTGCTTGTACCTAGTTCACGAGTTGGATGCCTTATTGGTAAAGGTGGTTCCATTATCACTGAGATGCGGAATTCCACAAGGGCAAGCATCCGCGTTCTTTCGAAGGAAAATCATCCAAAAGTGGCATCCGTAGATGACGAGATGGTGCAG : ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG : GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG : GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG : CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTG : GAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATTCCAAAGGTAAGTACTTCTCTTTCTTGCAAATGTTATTTCTTACACCGTGAGAGGATACATTATTTTGGTAGGAACATATACATCCTACTGTCAAAACATTTCAGGAGGAAAGAAAGCTCTATAACGTGCATTGCCAATTGCTTTTTGCCCTTTGGAGCGCTTCATGAAGGGGGGGTTCCATGTCTACATATGTGTTATTTCATTATTTGAGAATGGATTCTCTTTGCTCTGTGCTGTTTGATAAGAGTTCTGCACTGTACTTTGAAAGCTGGTCGTTTGTGGACGGCTGAGCATAGTTACTCTTTACTGTGGCCTTTGAATGGTCCATTCAAAGCGTCGATGCAATAGAGTTCATTGAAGCGACTTATTCCTGGAAATAAGAAGGCGTTAAAATATTGTCATTTCTATTTGGTCCCAACAGGATTCATATGTAAATATACTGGTTTTGTTGAGTTCATGTTAAGAATATTTCATTTTTAATATATATGGTTTTGTTTTGTGGAATTCATAATTAGAATATTTCATTTTTAATATATATGGTTTTGTTGAGTTA</gDNA_template>
            <first_frame> *  V  Q  H  F  *  *  D  H  P  W  S  K  N  F  L  Q  P  N  P  R  S  F  P  H  L  A  N  F  F  I  F  S  A  V  F  S  T  L  N  T  T  D  P  R  I  S  A  F  T  E  H   : L  I  Q  V  C  *  T  N  K  R :   V  A  H  S  A  P  *  H  G  R  P  E  E  *  L  R  *  E  N  A  I  G  I  R  L  F  Q  E  *  W  K  *  E  E  D  S  N  *  *  E  G  I  K  F  H  W  T  R  G  Y  C  F  S  L  F  M  P  H  R  K  N  W  K  Y  H  W  S  W  W  G  H  C  K  T  I  E  D  *  N  *  F  K  D  *  D  *  *  D  H  T  W  L  R  G  A  C  C  N  Y  L  *  W  K  *  R  N  *  Y  L  *  R  Y  W  *  P  D  F  T  C  S  R  C  S  I  *  G  A  *  Q  S  P  C  *  R  A  A  Y  G  R  R  S  G  G  S  S  D  Y  C  K  D  D  C  P  I  R  S  D  R  L  C  D  R  E  C  W  T  S  D  P  E  F  T  K  *  N  R  C  A  D  S  G  V  K  Q  *  A  L  A  P  L  C  S  K  L  G  *  A  S  P   : D  N  R  *  S  C  S  C  *  E  S  T  L  S  S  S  S  T  P  P  *  *  S  I  K  V  P  T  S  V  A  V  V  T  Q  H  I  *  V  W  C  W  T  C  E  S  S  C  W  *  P  S  H  G  C  D  I  I  D  G  S  L  R  K  L  Q  K  *  W  *  K  *  I  V  F  C  K  G  V  C  S  S  F  G  L  S  N  *  E  C  R  S  C  N  W  Q  R  W  R  S  Y  Q  T  A  K  T  G  I  R  C  I  Y  *  S  R  *  C  C  G  *  G  R  *  L  H  Y  I  C  I  S  K  G   : D  I  *  R  S  I  P  Y  H  R  C  N  N  A  F  A  T  K  K  *  *  E  N  *  K  R  I  R  *  C  Y  S  Y  D  S  P  A  C  T  *  F  T  S  W  M  P  Y  W  *  R  W  F  H  Y  H  *  D  A  E  F  H  K  G  K  H  P  R  S  F  E  G  K  S  S  K  S  G  I  R  R  *  R  D  G  A   : D  Y  W  R  C  *  C  C  C  Q  C  V  I  A  S  T  Y  A  V  E  G  Q  C  I  *  D  G  G  I  F  S  C  I  F  S  W  P  F  L  C  P  H  A  C  K  R  A  R  W  L  K  I  W  *  P  *  *  S  I  T  S  A  W  L  F  I  L  F  R  W  T  *  L  Q  *  F  V  S  K  G  *  L  W  W  L  T   : G  W  *  W  R  Q  L  C  T  I  W  R  L  F  L  W  A  T  *  *  F  R  :  G  F  Q  P  *  S  F  C  L  W  K  I  L  W  I  L  G  C  R  G  L  L  A  A  G   : A  I  I  S  D  A  C  S  R  P  L  P  D  P  I  D  E  A  S  S  L  R  T  E  D  Q  T  S  K  I  E  K  L  V  A  I  L  A  L  V  F  L  F  L  R  C  Y  Q  N  I  Y  C  N  E  T  T  P  L  S  H  *  R  P  F  V  P  K  I  P  L  L  *  Q  Y  C  V  A  D  *  V  M  T  V  *  Y  G  G  S  S  L  L  C  V  C  L  F  V  F  L  S  T  F  V  T  *  W  C  H  F  Y  C  *  P  V  M  L  Q  D  *  N  S  V  A  F  S  C  I  D  F  F  H  V  F  S  T  A  F  Q  *  L  N  K  S  S  R  K  S  G  F  C  I  S  G  G  K  N  V  M  F  S  *  Q  L  F  S  *  *  S  C  I  *  H  D  S  C  Y  W  V  L  S  S  *  T  K  P  L  L  L  V  A  S  T  E  L  L  R  D  Q  S  I  A  N  Y  D  Q  N  S  H  S  R  L  H  A  M  V  Y  T  K  K  A  D  F  Y  L  S  S  V  *  F  S  S  L  A  S  L  V  *  D  V  L  G  I  E  N  C  F  S  D  S  *  V  G  T  N  I  I  S  E  L  C  Y  M  W :   K  *  W  C  W  S  L  L  D  V  *  S  F  Y  V  I  D  S  A  G  L  I  E  N  L  V  L  M  I  N  S  K  G  K  Y  F  S  F  L  Q  M  L  F  L  T  P  *  E  D  T  L  F  W  *  E  H  I  H  P  T  V  K  T  F  Q  E  E  R  K  L  Y  N  V  H  C  Q  L  L  F  A  L  W  S  A  S  *  R  G  G  S  M  S  T  Y  V  L  F  H  Y  L  R  M  D  S  L  C  S  V  L  F  D  K  S  S  A  L  Y  F  E  S  W  S  F  V  D  G  *  A  *  L  L  F  T  V  A  F  E  W  S  I  Q  S  V  D  A  I  E  F  I  E  A  T  Y  S  W  K  *  E  G  V  K  I  L  S  F  L  F  G  P  N  R  I  H  M  *  I  Y  W  F  C  *  V  H  V  K  N  I  S  F  L  I  Y  M  V  L  F  C  G  I  H  N  *  N  I  S  F  L  I  Y  M  V  L  L  S   </first_frame>
            <second_frame>  R  Y  N  T  S  S  K  T  I  H  G  Q  K  T  F  Y  S  Q  T  L  E  A  S  L  I  W  Q  I  S  L  Y  F  Q  Q  Y  L  V  L  *  T  Q  Q  T  H  G  F  L  L  S  Q  N  T  :  *  Y  R  F  A  R  Q  T  K   : G  W  H  I  Q  L  L  D  M  A  G  Q  R  N  N  Y  G  K  R  M  Q  S  E  S  D  Y  S  R  S  D  G  S  K  R  R  T  P  T  D  E  K  E  S  N  S  I  G  P  E  D  T  V  F  R  Y  L  C  P  T  G  K  I  G  S  I  I  G  V  G  G  D  I  A  K  Q  L  R  T  E  T  N  S  K  I  R  I  S  E  T  I  P  G  C  E  E  R  V  V  T  I  Y  S  G  S  E  E  T  N  I  S  E  D  T  G  D  L  I  S  P  A  Q  D  A  L  F  R  V  H  D  R  V  L  A  E  E  L  R  M  D  E  D  L  E  D  H  Q  I  T  V  R  M  I  V  P  S  D  Q  I  G  C  V  I  G  N  A  G  Q  V  I  Q  N  L  R  S  E  T  G  A  Q  I  R  V  L  S  S  E  H  L  P  P  C  A  L  N  S  D  E  L  L  Q  :  I  T  G  E  V  A  V  V  K  R  A  L  Y  Q  V  A  A  R  L  H  D  N  P  S  R  S  Q  H  Q  L  L  S  S  P  S  I  Y  R  S  G  A  G  L  V  N  P  H  A  G  S  Q  V  M  G  V  T  S  L  M  G  P  Y  A  S  Y  K  S  D  G  R  S  R  S  S  S  V  K  E  F  A  V  R  L  V  C  P  I  E  N  V  G  A  V  I  G  K  G  G  G  V  I  K  Q  L  R  Q  E  S  G  A  S  I  K  V  D  S  A  A  A  E  G  D  D  C  I  I  F  V  S  A  K  E  :  T  F  E  D  Q  S  P  T  I  D  A  T  M  R  L  Q  P  R  S  S  E  K  T  E  K  E  S  G  D  A  I  L  T  T  R  L  L  V  P  S  S  R  V  G  C  L  I  G  K  G  G  S  I  I  T  E  M  R  N  S  T  R  A  S  I  R  V  L  S  K  E  N  H  P  K  V  A  S  V  D  D  E  M  V  Q  :  I  T  G  D  A  N  V  A  A  N  A  L  L  Q  V  L  M  R  L  R  A  N  A  F  E  M  E  G  S  F  P  A  F  S  P  G  L  S  Y  A  P  M  P  A  S  V  P  D  G  S  R  Y  G  N  R  D  N  R  S  R  R  H  G  Y  S  S  Y  S  G  G  H  D  Y  S  D  L  S  P  R  D  S  Y  G  G  S  Q  :  V  G  N  G  G  N  Y  A  P  Y  G  V  Y  S  S  G  R  P  S  S  S  G :   V  S  S  H  N  P  S  A  Y  G  K  S  Y  G  Y  *  G  V  E  G  Y  *  Q  P  E  :  L  S  S  P  M  P  V  P  D  H  C  P  T  L  L  T  K  P  P  A  *  E  Q  R  T  R  R  A  R  *  R  N  L  W  P  S  L  P  *  Y  F  C  F  L  G  V  T  R  I  Y  I  V  M  K  Q  H  L  L  V  I  E  G  L  L  Y  P  K  Y  L  C  F  S  S  I  V  *  Q  T  K  S  *  Q  F  D  M  V  V  L  L  Y  F  V  F  V  C  L  C  S  *  V  P  L  *  R  S  G  V  T  F  T  V  D  Q  L  C  Y  R  I  E  T  L  L  L  S  L  A  S  I  F  F  M  F  S  R  Q  L  S  S  N  *  T  K  V  Q  E  S  Q  V  S  A  F  Q  E  V  K  M  S  C  F  L  D  S  F  S  V  S  D  L  V  Y  D  M  I  P  A  I  G  F  Y  P  R  E  R  N  P  F  C  *  L  L  A  Q  S  F  *  E  I  N  Q  *  L  I  M  I  K  I  H  I  H  V  C  M  L  W  Y  T  L  R  R  Q  I  S  T  *  A  V  F  N  F  L  L  L  L  L  *  C  R  T  Y  L  G  L  R  I  A  F  P  I  V  E  *  A  R  I  *  F  Q  S  F  A  I  C   : G  N  D  G  V  G  H  C  L  M  S  D  H  F  M  *  S  I  L  Q  D  *  *  K  I  *  F  L  *  *  I  P  K  V  S  T  S  L  S  C  K  C  Y  F  L  H  R  E  R  I  H  Y  F  G  R  N  I  Y  I  L  L  S  K  H  F  R  R  K  E  S  S  I  T  C  I  A  N  C  F  L  P  F  G  A  L  H  E  G  G  V  P  C  L  H  M  C  Y  F  I  I  *  E  W  I  L  F  A  L  C  C  L  I  R  V  L  H  C  T  L  K  A  G  R  L  W  T  A  E  H  S  Y  S  L  L  W  P  L  N  G  P  F  K  A  S  M  Q  *  S  S  L  K  R  L  I  P  G  N  K  K  A  L  K  Y  C  H  F  Y  L  V  P  T  G  F  I  C  K  Y  T  G  F  V  E  F  M  L  R  I  F  H  F  *  Y  I  W  F  C  F  V  E  F  I  I  R  I  F  H  F  *  Y  I  W  F  C  *  V  </second_frame>
            <third_frame>   G  T  T  L  L  V  R  P  S  M  V  K  K  L  F  T  A  K  P  *  K  L  P  S  F  G  K  F  L  Y  I  F  S  S  I  *  Y  F  E  H  N  R  P  T  D  F  C  F  H  R  T  L :   D  T  G  L  L  D  K  Q  K  :  G  G  T  F  S  S  L  T  W  Q  A  R  G  I  T  T  V  R  E  C  N  R  N  P  T  I  P  G  V  M  E  V  R  G  G  L  Q  L  M  R  R  N  Q  I  P  L  D  Q  R  I  L  F  F  V  I  Y  A  P  Q  E  K  L  E  V  S  L  E  L  V  G  T  L  Q  N  N  *  G  L  K  L  I  Q  R  L  G  L  V  R  P  Y  L  A  A  R  S  V  L  *  L  F  I  V  E  V  K  K  L  I  S  L  K  I  L  V  T  *  F  H  L  L  K  M  L  Y  L  G  C  M  T  E  S  L  L  K  S  C  V  W  T  K  I  W  R  I  I  R  L  L  *  G  *  L  S  H  Q  I  R  *  V  V  *  *  G  M  L  D  K  *  S  R  I  Y  E  V  K  Q  V  R  R  F  G  C  *  A  V  S  T  C  P  L  V  L  *  T  R  M  S  F  S  R :   *  P  V  K  L  Q  L  L  R  E  H  F  I  K  *  Q  H  A  S  M  I  I  H  Q  G  P  N  I  S  C  C  R  H  P  A  Y  I  G  L  V  L  D  L  *  I  L  M  L  V  A  K  S  W  V  *  H  H  *  W  V  L  T  Q  V  T  K  V  M  V  E  V  D  R  L  L  *  R  S  L  Q  F  V  W  F  V  Q  L  R  M  *  E  L  *  L  A  K  V  E  E  L  S  N  S  *  D  R  N  Q  V  H  L  L  K  S  I  V  L  R  L  R  E  M  I  A  L  Y  L  Y  Q  Q  R  R :   H  L  K  I  N  P  L  P  S  M  Q  Q  C  V  C  N  Q  E  V  V  R  K  L  K  K  N  P  V  M  L  F  L  R  L  A  C  L  Y  L  V  H  E  L  D  A  L  L  V  K  V  V  P  L  S  L  R  C  G  I  P  Q  G  Q  A  S  A  F  F  R  R  K  I  I  Q  K  W  H  P  *  M  T  R  W  C  R :   L  L  E  M  L  M  L  L  P  M  R  Y  C  K  Y  L  C  G  *  G  P  M  H  L  R  W  R  D  L  F  L  H  F  L  L  A  F  L  M  P  P  C  L  Q  A  C  Q  M  A  Q  D  M  V  T  V  I  I  D  H  V  G  M  V  I  H  L  I  Q  V  D  M  I  T  V  I  C  L  Q  G  I  V  M  V  A  H  R :   L  V  M  E  A  I  M  H  H  M  A  F  I  P  L  G  D  L  V  V  Q   : G  F  P  A  I  I  L  L  P  M  E  N  L  M  D  T  R  V  *  R  V  I  S  S  R  S :   Y  H  L  R  C  L  F  Q  T  I  A  R  P  Y  *  R  S  L  Q  P  K  N  R  G  P  D  E  Q  D  R  E  T  C  G  H  P  C  P  S  I  S  V  S  *  V  L  P  E  Y  I  L  *  *  N  N  T  S  *  S  L  K  A  F  C  T  Q  N  T  F  A  L  A  V  L  C  S  R  L  S  H  D  S  L  I  W  W  F  F  F  T  L  C  L  F  V  C  V  L  K  Y  L  C  D  V  V  V  S  L  L  L  L  T  S  Y  A  T  G  L  K  L  C  C  F  L  L  H  R  F  F  S  C  F  L  D  S  F  P  V  I  E  Q  K  F  K  K  V  R  F  L  H  F  R  R  *  K  C  H  V  F  L  T  A  F  Q  L  V  I  L  Y  M  T  *  F  L  L  L  G  S  I  L  V  N  E  T  P  S  V  S  C  *  H  R  A  F  K  R  S  I  N  S  *  L  *  S  K  F  T  F  T  F  A  C  Y  G  I  H  *  E  G  R  F  L  L  E  Q  C  L  I  F  F  S  C  F  S  S  V  G  R  T  W  D  *  E  L  L  F  R  *  L  S  R  H  E  Y  N  F  R  A  L  L  Y  V  :  E  M  M  V  L  V  T  A  *  C  L  I  I  L  C  D  R  F  C  R  I  D  R  K  F  S  S  Y  D  K  F  Q  R  *  V  L  L  F  L  A  N  V  I  S  Y  T  V  R  G  Y  I  I  L  V  G  T  Y  T  S  Y  C  Q  N  I  S  G  G  K  K  A  L  *  R  A  L  P  I  A  F  C  P  L  E  R  F  M  K  G  G  F  H  V  Y  I  C  V  I  S  L  F  E  N  G  F  S  L  L  C  A  V  *  *  E  F  C  T  V  L  *  K  L  V  V  C  G  R  L  S  I  V  T  L  Y  C  G  L  *  M  V  H  S  K  R  R  C  N  R  V  H  *  S  D  L  F  L  E  I  R  R  R  *  N  I  V  I  S  I  W  S  Q  Q  D  S  Y  V  N  I  L  V  L  L  S  S  C  *  E  Y  F  I  F  N  I  Y  G  F  V  L  W  N  S  *  L  E  Y  F  I  F  N  I  Y  G  F  V  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55571" stop="55547"/>
                    <exon start="54207" stop="53609"/>
                    <exon start="52473" stop="52078"/>
                    <exon start="51980" stop="51726"/>
                    <exon start="51573" stop="51316"/>
                    <exon start="51126" stop="51062"/>
                    <exon start="50944" stop="50896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFARQTKGWHIQLLDMAGQRNNYGKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETNISEDTGDLISPAQDALFRVHDRVLAEELRMDEDLEDHQITVRMIVPSDQIGCVIGNAGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEVAVVKRALYQVAARLHDNPSRSQHQLLSSPSIYRSGAGLVNPHAGSQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPIENVGAVIGKGGGVIKQLRQESGASIKVDSAAAEGDDCIIFVSAKETFEDQSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIITEMRNSTRASIRVLSKENHPKVASVDDEMVQITGDANVAANALLQVLMRLRANAFEMEGSFPAFSPGLSYAPMPASVPDGSRYGNRDNRSRRHGYSSYSGGHDYSDLSPRDSYGGSQVGNGGNYAPYGVYSSGRPSSSGVSSHNPSAYGKSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50516" stop="50229"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKAFCTQNTFALAVLCSRLSHDSLIWWFFFTLCLFVCVLKYLCDVVVSLLLLTSYATGLKLCCFLLHRFFSCFLDSFPVIEQKFKKVRFLHFRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49738" stop="49526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKVSTSLSCKCYFLHRERIHYFGRNIYILLSKHFRRKESSITCIANCFLPFGALHEGGVPCLHMCYFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55704" e_stop="55687"/>
            <exon e_start="55574" e_stop="55547"/>
            <exon e_start="54207" e_stop="53609"/>
            <exon e_start="52473" e_stop="52078"/>
            <exon e_start="51573" e_stop="51316"/>
            <exon e_start="51126" e_stop="51062"/>
            <exon e_start="50944" e_stop="50869"/>
            <exon e_start="50691" e_stop="49736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.961"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55704" e_stop="55687" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="55686" i_stop="55575" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55574" e_stop="55547" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55546" i_stop="54208" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54207" e_stop="53609" e_length="599"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53608" i_stop="52474" i_length="1135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52473" e_stop="52078" e_length="396"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52077" i_stop="51574" i_length="504"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="51573" e_stop="51316" e_length="258"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51315" i_stop="51127" i_length="189"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51126" e_stop="51062" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51061" i_stop="50945" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50944" e_stop="50869" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.968" acc_prob="0.935">
            <gDNA_intron_boundary i_start="50868" i_stop="50692" i_length="177"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="50691" e_stop="49736" e_length="956"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55703" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53609"/>
              <exon start="52473" stop="52385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55692" stop="55687"/>
              <exon start="55574" stop="55547"/>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53888" stop="53609"/>
              <exon start="52473" stop="52189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53715" stop="53609"/>
              <exon start="52473" stop="52078"/>
              <exon start="51573" stop="51523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52465" stop="52245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52461" stop="52154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51543" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="51316"/>
              <exon start="51126" stop="51062"/>
              <exon start="50944" stop="50869"/>
              <exon start="50691" stop="50423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50601" stop="50162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTTTCACAGAACACT : TGATACAGGTTTGCTAGACAAACAAAAG : GGTGGCACATTCAGCTCCTTGACATGGCAGGCCAGAGGAATAACTACGGTAAGAGAATGCAATCGGAATCCGACTATTCCAGGAGTGATGGAAGTAAGAGGAGGACTCCAACTGATGAGAAGGAATCAAATTCCATTGGACCAGAGGATACTGTTTTTCGTTATTTATGCCCCACAGGAAAAATTGGAAGTATCATTGGAGTTGGTGGGGACATTGCAAAACAATTGAGGACTGAAACTAATTCAAAGATTAGGATTAGTGAGACCATACCTGGCTGCGAGGAGCGTGTTGTAACTATTTATAGTGGAAGTGAAGAAACTAATATCTCTGAAGATACTGGTGACCTGATTTCACCTGCTCAAGATGCTCTATTTAGGGTGCATGACAGAGTCCTTGCTGAAGAGCTGCGTATGGACGAAGATCTGGAGGATCATCAGATTACTGTAAGGATGATTGTCCCATCAGATCAGATAGGTTGTGTGATAGGGAATGCTGGACAAGTGATCCAGAATTTACGAAGTGAAACAGGTGCGCAGATTCGGGTGTTAAGCAGTGAGCACTTGCCCCCTTGTGCTCTAAACTCGGATGAGCTTCTCCAG : ATAACCGGTGAAGTTGCAGTTGTTAAGAGAGCACTTTATCAAGTAGCAGCACGCCTCCATGATAATCCATCAAGGTCCCAACATCAGTTGCTGTCGTCACCCAGCATATATAGGTCTGGTGCTGGACTTGTGAATCCTCATGCTGGTAGCCAAGTCATGGGTGTGACATCATTGATGGGTCCTTACGCAAGTTACAAAAGTGATGGTAGAAGTAGATCGTCTTCTGTAAAGGAGTTTGCAGTTCGTTTGGTTTGTCCAATTGAGAATGTAGGAGCTGTAATTGGCAAAGGTGGAGGAGTTATCAAACAGCTAAGACAGGAATCAGGTGCATCTATTAAAGTCGATAGTGCTGCGGCTGAGGGAGATGATTGCATTATATTTGTATCAGCAAAGGAG : ATTACTGGAGATGCTAATGTTGCTGCCAATGCGTTATTGCAAGTACTTATGCGGTTGAGGGCCAATGCATTTGAGATGGAGGGATCTTTTCCTGCATTTTCTCCTGGCCTTTCTTATGCCCCCATGCCTGCAAGCGTGCCAGATGGCTCAAGATATGGTAACCGTGATAATCGATCACGTCGGCATGGTTATTCATCTTATTCAGGTGGACATGATTACAGTGATTTGTCTCCAAGGGATAGTTATGGTGGCTCACAG : GTTGGTAATGGAGGCAATTATGCACCATATGGCGTTTATTCCTCTGGGCGACCTAGTAGTTCAGG : GGTTTCCAGCCATAATCCTTCTGCCTATGGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAG : CTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATT</gDNA_template>
            <first_frame> L  L  S  Q  N  T  :  *  Y  R  F  A  R  Q  T  K   : G  W  H  I  Q  L  L  D  M  A  G  Q  R  N  N  Y  G  K  R  M  Q  S  E  S  D  Y  S  R  S  D  G  S  K  R  R  T  P  T  D  E  K  E  S  N  S  I  G  P  E  D  T  V  F  R  Y  L  C  P  T  G  K  I  G  S  I  I  G  V  G  G  D  I  A  K  Q  L  R  T  E  T  N  S  K  I  R  I  S  E  T  I  P  G  C  E  E  R  V  V  T  I  Y  S  G  S  E  E  T  N  I  S  E  D  T  G  D  L  I  S  P  A  Q  D  A  L  F  R  V  H  D  R  V  L  A  E  E  L  R  M  D  E  D  L  E  D  H  Q  I  T  V  R  M  I  V  P  S  D  Q  I  G  C  V  I  G  N  A  G  Q  V  I  Q  N  L  R  S  E  T  G  A  Q  I  R  V  L  S  S  E  H  L  P  P  C  A  L  N  S  D  E  L  L  Q  :  I  T  G  E  V  A  V  V  K  R  A  L  Y  Q  V  A  A  R  L  H  D  N  P  S  R  S  Q  H  Q  L  L  S  S  P  S  I  Y  R  S  G  A  G  L  V  N  P  H  A  G  S  Q  V  M  G  V  T  S  L  M  G  P  Y  A  S  Y  K  S  D  G  R  S  R  S  S  S  V  K  E  F  A  V  R  L  V  C  P  I  E  N  V  G  A  V  I  G  K  G  G  G  V  I  K  Q  L  R  Q  E  S  G  A  S  I  K  V  D  S  A  A  A  E  G  D  D  C  I  I  F  V  S  A  K  E  :  I  T  G  D  A  N  V  A  A  N  A  L  L  Q  V  L  M  R  L  R  A  N  A  F  E  M  E  G  S  F  P  A  F  S  P  G  L  S  Y  A  P  M  P  A  S  V  P  D  G  S  R  Y  G  N  R  D  N  R  S  R  R  H  G  Y  S  S  Y  S  G  G  H  D  Y  S  D  L  S  P  R  D  S  Y  G  G  S  Q  :  V  G  N  G  G  N  Y  A  P  Y  G  V  Y  S  S  G  R  P  S  S  S  G :   V  S  S  H  N  P  S  A  Y  G  K  S  Y  G  Y  *  G  V  E  G  Y  *  Q  P  E  :  L  S  S  P  M  P  V  P  D  H  C  P  T  L  L  T  K  P  P  A  *  E  Q  R  T  R  R  A  R  *  R  N  L  W  P  S  L  P  *  Y  F  C  F  L  G  V  T  R  I  Y  I  V  M  K  Q  H  L  L  V  I  E  G  L  L  Y  P  K  Y  L  C  F  S  S  I  V  *  Q  T  K  S  *  Q  F  D  M  V  V  L  L  Y  F  V  F  V  C  L  C  S  *  V  P  L  *  R  S  G  V  T  F  T  V  D  Q  L  C  Y  R  I  E  T  L  L  L  S  L  A  S  I  F  F  M  F  S  R  Q  L  S  S  N  *  T  K  V  Q  E  S  Q  V  S  A  F  Q  E  V  K  M  S  C  F  L  D  S  F  S  V  S  D  L  V  Y  D  M  I  P  A  I  G  F  Y  P  R  E  R  N  P  F  C  *  L  L  A  Q  S  F  *  E  I  N  Q  *  L  I  M  I  K  I  H  I  H  V  C  M  L  W  Y  T  L  R  R  Q  I  S  T  *  A  V  F  N  F  L  L  L  L  L  *  C  R  T  Y  L  G  L  R  I  A  F  P  I  V  E  *  A  R  I  *  F  Q  S  F  A  I  C  G  K  P  V  S  Y  L  V  N  I  H  A  P  L  A  S  R  K  *  R  R  S  F  G  L  *  E  M  M  V  L  V  T  A  *  C  L  I  I  L  C  D  R  F  C  R  I  D  R  K  F  S  S  Y  D  K   </first_frame>
            <second_frame>  C  F  H  R  T  L :   D  T  G  L  L  D  K  Q  K  :  G  G  T  F  S  S  L  T  W  Q  A  R  G  I  T  T  V  R  E  C  N  R  N  P  T  I  P  G  V  M  E  V  R  G  G  L  Q  L  M  R  R  N  Q  I  P  L  D  Q  R  I  L  F  F  V  I  Y  A  P  Q  E  K  L  E  V  S  L  E  L  V  G  T  L  Q  N  N  *  G  L  K  L  I  Q  R  L  G  L  V  R  P  Y  L  A  A  R  S  V  L  *  L  F  I  V  E  V  K  K  L  I  S  L  K  I  L  V  T  *  F  H  L  L  K  M  L  Y  L  G  C  M  T  E  S  L  L  K  S  C  V  W  T  K  I  W  R  I  I  R  L  L  *  G  *  L  S  H  Q  I  R  *  V  V  *  *  G  M  L  D  K  *  S  R  I  Y  E  V  K  Q  V  R  R  F  G  C  *  A  V  S  T  C  P  L  V  L  *  T  R  M  S  F  S  R :   *  P  V  K  L  Q  L  L  R  E  H  F  I  K  *  Q  H  A  S  M  I  I  H  Q  G  P  N  I  S  C  C  R  H  P  A  Y  I  G  L  V  L  D  L  *  I  L  M  L  V  A  K  S  W  V  *  H  H  *  W  V  L  T  Q  V  T  K  V  M  V  E  V  D  R  L  L  *  R  S  L  Q  F  V  W  F  V  Q  L  R  M  *  E  L  *  L  A  K  V  E  E  L  S  N  S  *  D  R  N  Q  V  H  L  L  K  S  I  V  L  R  L  R  E  M  I  A  L  Y  L  Y  Q  Q  R  R :   L  L  E  M  L  M  L  L  P  M  R  Y  C  K  Y  L  C  G  *  G  P  M  H  L  R  W  R  D  L  F  L  H  F  L  L  A  F  L  M  P  P  C  L  Q  A  C  Q  M  A  Q  D  M  V  T  V  I  I  D  H  V  G  M  V  I  H  L  I  Q  V  D  M  I  T  V  I  C  L  Q  G  I  V  M  V  A  H  R :   L  V  M  E  A  I  M  H  H  M  A  F  I  P  L  G  D  L  V  V  Q   : G  F  P  A  I  I  L  L  P  M  E  N  L  M  D  T  R  V  *  R  V  I  S  S  R  S :   Y  H  L  R  C  L  F  Q  T  I  A  R  P  Y  *  R  S  L  Q  P  K  N  R  G  P  D  E  Q  D  R  E  T  C  G  H  P  C  P  S  I  S  V  S  *  V  L  P  E  Y  I  L  *  *  N  N  T  S  *  S  L  K  A  F  C  T  Q  N  T  F  A  L  A  V  L  C  S  R  L  S  H  D  S  L  I  W  W  F  F  F  T  L  C  L  F  V  C  V  L  K  Y  L  C  D  V  V  V  S  L  L  L  L  T  S  Y  A  T  G  L  K  L  C  C  F  L  L  H  R  F  F  S  C  F  L  D  S  F  P  V  I  E  Q  K  F  K  K  V  R  F  L  H  F  R  R  *  K  C  H  V  F  L  T  A  F  Q  L  V  I  L  Y  M  T  *  F  L  L  L  G  S  I  L  V  N  E  T  P  S  V  S  C  *  H  R  A  F  K  R  S  I  N  S  *  L  *  S  K  F  T  F  T  F  A  C  Y  G  I  H  *  E  G  R  F  L  L  E  Q  C  L  I  F  F  S  C  F  S  S  V  G  R  T  W  D  *  E  L  L  F  R  *  L  S  R  H  E  Y  N  F  R  A  L  L  Y  V  V  N  L  C  L  I  L  L  I  F  M  L  P  W  P  Q  G  N  D  G  V  P  L  A  F  R  K  *  W  C  W  S  L  L  D  V  *  S  F  Y  V  I  D  S  A  G  L  I  E  N  L  V  L  M  I  N  </second_frame>
            <third_frame>   A  F  T  E  H   : L  I  Q  V  C  *  T  N  K  R :   V  A  H  S  A  P  *  H  G  R  P  E  E  *  L  R  *  E  N  A  I  G  I  R  L  F  Q  E  *  W  K  *  E  E  D  S  N  *  *  E  G  I  K  F  H  W  T  R  G  Y  C  F  S  L  F  M  P  H  R  K  N  W  K  Y  H  W  S  W  W  G  H  C  K  T  I  E  D  *  N  *  F  K  D  *  D  *  *  D  H  T  W  L  R  G  A  C  C  N  Y  L  *  W  K  *  R  N  *  Y  L  *  R  Y  W  *  P  D  F  T  C  S  R  C  S  I  *  G  A  *  Q  S  P  C  *  R  A  A  Y  G  R  R  S  G  G  S  S  D  Y  C  K  D  D  C  P  I  R  S  D  R  L  C  D  R  E  C  W  T  S  D  P  E  F  T  K  *  N  R  C  A  D  S  G  V  K  Q  *  A  L  A  P  L  C  S  K  L  G  *  A  S  P   : D  N  R  *  S  C  S  C  *  E  S  T  L  S  S  S  S  T  P  P  *  *  S  I  K  V  P  T  S  V  A  V  V  T  Q  H  I  *  V  W  C  W  T  C  E  S  S  C  W  *  P  S  H  G  C  D  I  I  D  G  S  L  R  K  L  Q  K  *  W  *  K  *  I  V  F  C  K  G  V  C  S  S  F  G  L  S  N  *  E  C  R  S  C  N  W  Q  R  W  R  S  Y  Q  T  A  K  T  G  I  R  C  I  Y  *  S  R  *  C  C  G  *  G  R  *  L  H  Y  I  C  I  S  K  G   : D  Y  W  R  C  *  C  C  C  Q  C  V  I  A  S  T  Y  A  V  E  G  Q  C  I  *  D  G  G  I  F  S  C  I  F  S  W  P  F  L  C  P  H  A  C  K  R  A  R  W  L  K  I  W  *  P  *  *  S  I  T  S  A  W  L  F  I  L  F  R  W  T  *  L  Q  *  F  V  S  K  G  *  L  W  W  L  T   : G  W  *  W  R  Q  L  C  T  I  W  R  L  F  L  W  A  T  *  *  F  R  :  G  F  Q  P  *  S  F  C  L  W  K  I  L  W  I  L  G  C  R  G  L  L  A  A  G   : A  I  I  S  D  A  C  S  R  P  L  P  D  P  I  D  E  A  S  S  L  R  T  E  D  Q  T  S  K  I  E  K  L  V  A  I  L  A  L  V  F  L  F  L  R  C  Y  Q  N  I  Y  C  N  E  T  T  P  L  S  H  *  R  P  F  V  P  K  I  P  L  L  *  Q  Y  C  V  A  D  *  V  M  T  V  *  Y  G  G  S  S  L  L  C  V  C  L  F  V  F  L  S  T  F  V  T  *  W  C  H  F  Y  C  *  P  V  M  L  Q  D  *  N  S  V  A  F  S  C  I  D  F  F  H  V  F  S  T  A  F  Q  *  L  N  K  S  S  R  K  S  G  F  C  I  S  G  G  K  N  V  M  F  S  *  Q  L  F  S  *  *  S  C  I  *  H  D  S  C  Y  W  V  L  S  S  *  T  K  P  L  L  L  V  A  S  T  E  L  L  R  D  Q  S  I  A  N  Y  D  Q  N  S  H  S  R  L  H  A  M  V  Y  T  K  K  A  D  F  Y  L  S  S  V  *  F  S  S  L  A  S  L  V  *  D  V  L  G  I  E  N  C  F  S  D  S  *  V  G  T  N  I  I  S  E  L  C  Y  M  W  *  T  C  V  L  S  C  *  Y  S  C  S  L  G  L  K  E  M  T  A  F  L  W  P  L  G  N  D  G  V  G  H  C  L  M  S  D  H  F  M  *  S  I  L  Q  D  *  *  K  I  *  F  L  *  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55571" stop="55547"/>
                    <exon start="54207" stop="53609"/>
                    <exon start="52473" stop="52078"/>
                    <exon start="51573" stop="51316"/>
                    <exon start="51126" stop="51062"/>
                    <exon start="50944" stop="50896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFARQTKGWHIQLLDMAGQRNNYGKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETNISEDTGDLISPAQDALFRVHDRVLAEELRMDEDLEDHQITVRMIVPSDQIGCVIGNAGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEVAVVKRALYQVAARLHDNPSRSQHQLLSSPSIYRSGAGLVNPHAGSQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPIENVGAVIGKGGGVIKQLRQESGASIKVDSAAAEGDDCIIFVSAKEITGDANVAANALLQVLMRLRANAFEMEGSFPAFSPGLSYAPMPASVPDGSRYGNRDNRSRRHGYSSYSGGHDYSDLSPRDSYGGSQVGNGGNYAPYGVYSSGRPSSSGVSSHNPSAYGKSYGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50516" stop="50229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKAFCTQNTFALAVLCSRLSHDSLIWWFFFTLCLFVCVLKYLCDVVVSLLLLTSYATGLKLCCFLLHRFFSCFLDSFPVIEQKFKKVRFLHFRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50916" e_stop="49736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="50916" e_stop="49736" e_length="1181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50916" stop="50133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50916" stop="50211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50601" stop="50162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATCTTATGGATACTAGGGTGTAGAGGGTTATTAGCAGCCGGAGGTACAGAATTTCACCTTTTTTTGGTCTTATACATAAATTAATGGGCATCTCTGTTCTGTACTTCAGTATAGCCTCAAGCACATCTTCCTTTTGATAACTTTGACTAGCCTGAAGCCTGTATTGCATCTCTAATGCTCTTTCTTTTACTTTGCCTTTTCACACTTGCCATCTAAACAGCTATCATCTCCGATGCCTGTTCCAGACCATTGCCCGACCCTATTGACGAAGCCTCCAGCCTAAGAACAGAGGACCAGACGAGCAAGATAGAGAAACTTGTGGCCATCCTTGCCCTAGTATTTCTGTTTCTTAGGTGTTACCAGAATATATATTGTAATGAAACAACACCTCTTAGTCATTGAAGGCCTTTTGTACCCAAAATACCTTTGCTTTAGCAGTATTGTGTAGCAGACTAAGTCATGACAGTTTGATATGGTGGTTCTTCTTTACTTTGTGTTTGTTTGTTTGTGTTCTTAAGTACCTTTGTGACGTAGTGGTGTCACTTTTACTGTTGACCAGTTATGCTACAGGATTGAAACTCTGTTGCTTTCTCTTGCATCGATTTTTTTCATGTTTTCTCGACAGCTTTCCAGTAATTGAACAAAAGTTCAAGAAAGTCAGGTTTCTGCATTTCAGGAGGTAAAAATGTCATGTTTTCTTGACAGCTTTTCAGTTAGTGATCTTGTATATGACATGATTCCTGCTATTGGGTTCTATCCTCGTGAACGAAACCCCTTCTGTTAGTTGCTAGCACAGAGCTTTTAAGAGATCAATCAATAGCTAATTATGATCAAAATTCACATTCACGTTTGCATGCTATGGTATACACTAAGAAGGCAGATTTCTACTTGAGCAGTGTTTAATTTTCTTCTCTTGCTTCTCTAGTGTAGGACGTACTTGGGATTGAGAATTGCTTTTCCGATAGTTGAGTAGGCACGAATATAATTTCAGAGCTTTGCTATATGTGGTAAACCTGTGTCTTATCTTGTTAATATTCATGCTCCCTTGGCCTCAAGGAAATGACGGCGTTCCTTTGGCCTTTAGGAAATGATGGTGTTGGTCACTGCTTGATGTCTGATCATTTTATGTGATCGATTCTGCAGGATTGATAGAAAATTTAGTTCTTATGATAAATT</gDNA_template>
            <first_frame> G  K  S  Y  G  Y  *  G  V  E  G  Y  *  Q  P  E  V  Q  N  F  T  F  F  W  S  Y  T  *  I  N  G  H  L  C  S  V  L  Q  Y  S  L  K  H  I  F  L  L  I  T  L  T  S  L  K  P  V  L  H  L  *  C  S  F  F  Y  F  A  F  S  H  L  P  S  K  Q  L  S  S  P  M  P  V  P  D  H  C  P  T  L  L  T  K  P  P  A  *  E  Q  R  T  R  R  A  R  *  R  N  L  W  P  S  L  P  *  Y  F  C  F  L  G  V  T  R  I  Y  I  V  M  K  Q  H  L  L  V  I  E  G  L  L  Y  P  K  Y  L  C  F  S  S  I  V  *  Q  T  K  S  *  Q  F  D  M  V  V  L  L  Y  F  V  F  V  C  L  C  S  *  V  P  L  *  R  S  G  V  T  F  T  V  D  Q  L  C  Y  R  I  E  T  L  L  L  S  L  A  S  I  F  F  M  F  S  R  Q  L  S  S  N  *  T  K  V  Q  E  S  Q  V  S  A  F  Q  E  V  K  M  S  C  F  L  D  S  F  S  V  S  D  L  V  Y  D  M  I  P  A  I  G  F  Y  P  R  E  R  N  P  F  C  *  L  L  A  Q  S  F  *  E  I  N  Q  *  L  I  M  I  K  I  H  I  H  V  C  M  L  W  Y  T  L  R  R  Q  I  S  T  *  A  V  F  N  F  L  L  L  L  L  *  C  R  T  Y  L  G  L  R  I  A  F  P  I  V  E  *  A  R  I  *  F  Q  S  F  A  I  C  G  K  P  V  S  Y  L  V  N  I  H  A  P  L  A  S  R  K  *  R  R  S  F  G  L  *  E  M  M  V  L  V  T  A  *  C  L  I  I  L  C  D  R  F  C  R  I  D  R  K  F  S  S  Y  D  K   </first_frame>
            <second_frame>  E  N  L  M  D  T  R  V  *  R  V  I  S  S  R  R  Y  R  I  S  P  F  F  G  L  I  H  K  L  M  G  I  S  V  L  Y  F  S  I  A  S  S  T  S  S  F  *  *  L  *  L  A  *  S  L  Y  C  I  S  N  A  L  S  F  T  L  P  F  H  T  C  H  L  N  S  Y  H  L  R  C  L  F  Q  T  I  A  R  P  Y  *  R  S  L  Q  P  K  N  R  G  P  D  E  Q  D  R  E  T  C  G  H  P  C  P  S  I  S  V  S  *  V  L  P  E  Y  I  L  *  *  N  N  T  S  *  S  L  K  A  F  C  T  Q  N  T  F  A  L  A  V  L  C  S  R  L  S  H  D  S  L  I  W  W  F  F  F  T  L  C  L  F  V  C  V  L  K  Y  L  C  D  V  V  V  S  L  L  L  L  T  S  Y  A  T  G  L  K  L  C  C  F  L  L  H  R  F  F  S  C  F  L  D  S  F  P  V  I  E  Q  K  F  K  K  V  R  F  L  H  F  R  R  *  K  C  H  V  F  L  T  A  F  Q  L  V  I  L  Y  M  T  *  F  L  L  L  G  S  I  L  V  N  E  T  P  S  V  S  C  *  H  R  A  F  K  R  S  I  N  S  *  L  *  S  K  F  T  F  T  F  A  C  Y  G  I  H  *  E  G  R  F  L  L  E  Q  C  L  I  F  F  S  C  F  S  S  V  G  R  T  W  D  *  E  L  L  F  R  *  L  S  R  H  E  Y  N  F  R  A  L  L  Y  V  V  N  L  C  L  I  L  L  I  F  M  L  P  W  P  Q  G  N  D  G  V  P  L  A  F  R  K  *  W  C  W  S  L  L  D  V  *  S  F  Y  V  I  D  S  A  G  L  I  E  N  L  V  L  M  I  N  </second_frame>
            <third_frame>   K  I  L  W  I  L  G  C  R  G  L  L  A  A  G  G  T  E  F  H  L  F  L  V  L  Y  I  N  *  W  A  S  L  F  C  T  S  V  *  P  Q  A  H  L  P  F  D  N  F  D  *  P  E  A  C  I  A  S  L  M  L  F  L  L  L  C  L  F  T  L  A  I  *  T  A  I  I  S  D  A  C  S  R  P  L  P  D  P  I  D  E  A  S  S  L  R  T  E  D  Q  T  S  K  I  E  K  L  V  A  I  L  A  L  V  F  L  F  L  R  C  Y  Q  N  I  Y  C  N  E  T  T  P  L  S  H  *  R  P  F  V  P  K  I  P  L  L  *  Q  Y  C  V  A  D  *  V  M  T  V  *  Y  G  G  S  S  L  L  C  V  C  L  F  V  F  L  S  T  F  V  T  *  W  C  H  F  Y  C  *  P  V  M  L  Q  D  *  N  S  V  A  F  S  C  I  D  F  F  H  V  F  S  T  A  F  Q  *  L  N  K  S  S  R  K  S  G  F  C  I  S  G  G  K  N  V  M  F  S  *  Q  L  F  S  *  *  S  C  I  *  H  D  S  C  Y  W  V  L  S  S  *  T  K  P  L  L  L  V  A  S  T  E  L  L  R  D  Q  S  I  A  N  Y  D  Q  N  S  H  S  R  L  H  A  M  V  Y  T  K  K  A  D  F  Y  L  S  S  V  *  F  S  S  L  A  S  L  V  *  D  V  L  G  I  E  N  C  F  S  D  S  *  V  G  T  N  I  I  S  E  L  C  Y  M  W  *  T  C  V  L  S  C  *  Y  S  C  S  L  G  L  K  E  M  T  A  F  L  W  P  L  G  N  D  G  V  G  H  C  L  M  S  D  H  F  M  *  S  I  L  Q  D  *  *  K  I  *  F  L  *  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50516" stop="50229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKAFCTQNTFALAVLCSRLSHDSLIWWFFFTLCLFVCVLKYLCDVVVSLLLLTSYATGLKLCCFLLHRFFSCFLDSFPVIEQKFKKVRFLHFRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="59593" PGL_stop="65066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59593" e_stop="59659"/>
            <exon e_start="60831" e_stop="60956"/>
            <exon e_start="64746" e_stop="65066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59593" e_stop="59659" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59660" i_stop="60830" i_length="1171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60831" e_stop="60956" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.968">
            <gDNA_intron_boundary i_start="60957" i_stop="64745" i_length="3789"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="64746" e_stop="65066" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59593" stop="59659"/>
              <exon start="60831" stop="60956"/>
              <exon start="64746" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGCAGACATTTTTATTCCTTCAAAGTTCATTTCCAGTCTCTTCACTCCAATAATTCAAACATTT : GTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTG : GGAGCATCAATTGCTAGGGATGGCAGAGGCTCAACTTCATCCCGATCTGACAGTAGTGACTGTGATTCAATCACCAAGTCCCATTCATCTTATCGTAGCTTCCCAAGTCGCCGTTTCTTTATGTCAAAACCCATACATCCTCTGTCATTTCCAACTGAAACAACACCTAGAAGAGAAGCTATTGACAGCCTCTCAGCAGGTTTTCTCGAATTTGATGCCTCAACATCACAAAGAGATAAACACCGCTTGAGCAGTGCTAGTGGCAGTCTTGACTTAACAGAGGCTTCTGAATCTTTTCATTCTGACTTCCTAAGTAAACCT</gDNA_template>
            <first_frame> Q  S  R  H  F  Y  S  F  K  V  H  F  Q  S  L  H  S  N  N  S  N  I   : C  A  V  N  *  D  T  *  S  S  P  K  K  *  G  E  N  S  R  S  W  *  I  H  E  E  M  E  *  L  L  E  L  H  P  L  R  *  K  S  R  A   : G  S  I  N  C  *  G  W  Q  R  L  N  F  I  P  I  *  Q  *  *  L  *  F  N  H  Q  V  P  F  I  L  S  *  L  P  K  S  P  F  L  Y  V  K  T  H  T  S  S  V  I  S  N  *  N  N  T  *  K  R  S  Y  *  Q  P  L  S  R  F  S  R  I  *  C  L  N  I  T  K  R  *  T  P  L  E  Q  C  *  W  Q  S  *  L  N  R  G  F  *  I  F  S  F  *  L  P  K  *  T  </first_frame>
            <second_frame>  K  A  D  I  F  I  P  S  K  F  I  S  S  L  F  T  P  I  I  Q  T  F  :  V  Q  L  I  R  T  L  E  V  V  L  R  S  E  G  K  T  H  A  L  G  K  Y  M  K  R  W  S  S  Y  *  S  C  T  L  Y  A  E  N  R  E  L  :  G  A  S  I  A  R  D  G  R  G  S  T  S  S  R  S  D  S  S  D  C  D  S  I  T  K  S  H  S  S  Y  R  S  F  P  S  R  R  F  F  M  S  K  P  I  H  P  L  S  F  P  T  E  T  T  P  R  R  E  A  I  D  S  L  S  A  G  F  L  E  F  D  A  S  T  S  Q  R  D  K  H  R  L  S  S  A  S  G  S  L  D  L  T  E  A  S  E  S  F  H  S  D  F  L  S  K  P </second_frame>
            <third_frame>   K  Q  T  F  L  F  L  Q  S  S  F  P  V  S  S  L  Q  *  F  K  H  L :   C  S  *  L  G  H  L  K  *  S  *  E  V  R  G  K  L  T  L  L  V  N  T  *  R  D  G  V  V  T  R  V  A  P  F  T  L  K  I  E  S  W :   E  H  Q  L  L  G  M  A  E  A  Q  L  H  P  D  L  T  V  V  T  V  I  Q  S  P  S  P  I  H  L  I  V  A  S  Q  V  A  V  S  L  C  Q  N  P  Y  I  L  C  H  F  Q  L  K  Q  H  L  E  E  K  L  L  T  A  S  Q  Q  V  F  S  N  L  M  P  Q  H  H  K  E  I  N  T  A  *  A  V  L  V  A  V  L  T  *  Q  R  L  L  N  L  F  I  L  T  S  *  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60924" stop="60956"/>
                    <exon start="64746" stop="65066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTLYAENRELGASIARDGRGSTSSRSDSSDCDSITKSHSSYRSFPSRRFFMSKPIHPLSFPTETTPRREAIDSLSAGFLEFDASTSQRDKHRLSSASGSLDLTEASESFHSDFLSKP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60904" stop="60956"/>
                    <exon start="64746" stop="64995"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDGVVTRVAPFTLKIESWEHQLLGMAEAQLHPDLTVVTVIQSPSPIHLIVASQVAVSLCQNPYILCHFQLKQHLEEKLLTASQQVFSNLMPQHHKEINTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59629" e_stop="59659"/>
            <exon e_start="60793" e_stop="61494"/>
            <exon e_start="64612" e_stop="64648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.837" e_score="0.968"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="0.942"/>
          <exon-only e_score="0.811"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="59629" e_stop="59659" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.837">
            <gDNA_intron_boundary i_start="59660" i_stop="60792" i_length="1133"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="60793" e_stop="61494" e_length="702"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="61495" i_stop="64611" i_length="3117"/>
          </intron>
          <exon e_serial="3" e_score="0.811">
            <gDNA_exon_boundary e_start="64612" e_stop="64648" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59629" stop="59659"/>
              <exon start="60793" stop="61494"/>
              <exon start="64612" stop="64648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTCTCTTCACTCCAATAATTCAAACATTT : TGGAATTGTTGTATATAATTGGTATATGCACATACCAGGTGCAGTTAATTAGGACACTTGAAGTAGTCCTAAGAAGTGAGGGGAAAACTCACGCTCTTGGTAAATACATGAAGAGATGGAGTAGTTACTAGAGTTGCACCCTTTACGCTGAAAATCGAGAGCTGGTGAGCATTGTTAAATCGTGTTCCCTTTGTTGTGTTGCTGAAACTGAATGGAGTAGTTACTAGAGTTGCTCTTTATTCTGAAAATTGAGAATTGAGAATTGAGAGAAGCAAGTACCAACATAATACTTGTGAGTCTTGTGAAACATAGCTAAGACGGGGTCCCTTTGTTGTGTGGCTGCAAGGCCACATGGGTCCAATGCAGCTAGTGGAGAATGGTCCATGGGGCCACATGAGCCTTACTGGCGGACTAATTCAAGCTTCTCCCCAGCACCATCCAGATGGGATTTCCGCTTCCAACCTGAAACATTATCCTTTGGCTCTAATGATGGAGTTCAATTGTATGGATCTTCTGCTTCATCAAACAGTAGAGATAGTAGAAGTTGGGTGAGGGGGAACCAATTGGCCAATCACCAATATGTCATATCAGATGGTGTTGGTGCATACTGTAGTAGCCCATCGGACATCTCTCCGGCACAACAGTGGACTCCACCAGCTATCCAAGAAATCAACATTGATGATTTTGGTACTTCAAGAAGGG : ATGCAATTACGAGGCCATTTTCATTTTCACCTACAAT</gDNA_template>
            <first_frame> Q  S  L  H  S  N  N  S  N  I   : L  E  L  L  Y  I  I  G  I  C  T  Y  Q  V  Q  L  I  R  T  L  E  V  V  L  R  S  E  G  K  T  H  A  L  G  K  Y  M  K  R  W  S  S  Y  *  S  C  T  L  Y  A  E  N  R  E  L  V  S  I  V  K  S  C  S  L  C  C  V  A  E  T  E  W  S  S  Y  *  S  C  S  L  F  *  K  L  R  I  E  N  *  E  K  Q  V  P  T  *  Y  L  *  V  L  *  N  I  A  K  T  G  S  L  C  C  V  A  A  R  P  H  G  S  N  A  A  S  G  E  W  S  M  G  P  H  E  P  Y  W  R  T  N  S  S  F  S  P  A  P  S  R  W  D  F  R  F  Q  P  E  T  L  S  F  G  S  N  D  G  V  Q  L  Y  G  S  S  A  S  S  N  S  R  D  S  R  S  W  V  R  G  N  Q  L  A  N  H  Q  Y  V  I  S  D  G  V  G  A  Y  C  S  S  P  S  D  I  S  P  A  Q  Q  W  T  P  P  A  I  Q  E  I  N  I  D  D  F  G  T  S  R  R   : D  A  I  T  R  P  F  S  F  S  P  T   </first_frame>
            <second_frame>  S  L  F  T  P  I  I  Q  T  F  :  W  N  C  C  I  *  L  V  Y  A  H  T  R  C  S  *  L  G  H  L  K  *  S  *  E  V  R  G  K  L  T  L  L  V  N  T  *  R  D  G  V  V  T  R  V  A  P  F  T  L  K  I  E  S  W  *  A  L  L  N  R  V  P  F  V  V  L  L  K  L  N  G  V  V  T  R  V  A  L  Y  S  E  N  *  E  L  R  I  E  R  S  K  Y  Q  H  N  T  C  E  S  C  E  T  *  L  R  R  G  P  F  V  V  W  L  Q  G  H  M  G  P  M  Q  L  V  E  N  G  P  W  G  H  M  S  L  T  G  G  L  I  Q  A  S  P  Q  H  H  P  D  G  I  S  A  S  N  L  K  H  Y  P  L  A  L  M  M  E  F  N  C  M  D  L  L  L  H  Q  T  V  E  I  V  E  V  G  *  G  G  T  N  W  P  I  T  N  M  S  Y  Q  M  V  L  V  H  T  V  V  A  H  R  T  S  L  R  H  N  S  G  L  H  Q  L  S  K  K  S  T  L  M  I  L  V  L  Q  E  G  :  M  Q  L  R  G  H  F  H  F  H  L  Q  </second_frame>
            <third_frame>   V  S  S  L  Q  *  F  K  H  F :   G  I  V  V  Y  N  W  Y  M  H  I  P  G  A  V  N  *  D  T  *  S  S  P  K  K  *  G  E  N  S  R  S  W  *  I  H  E  E  M  E  *  L  L  E  L  H  P  L  R  *  K  S  R  A  G  E  H  C  *  I  V  F  P  L  L  C  C  *  N  *  M  E  *  L  L  E  L  L  F  I  L  K  I  E  N  *  E  L  R  E  A  S  T  N  I  I  L  V  S  L  V  K  H  S  *  D  G  V  P  L  L  C  G  C  K  A  T  W  V  Q  C  S  *  W  R  M  V  H  G  A  T  *  A  L  L  A  D  *  F  K  L  L  P  S  T  I  Q  M  G  F  P  L  P  T  *  N  I  I  L  W  L  *  *  W  S  S  I  V  W  I  F  C  F  I  K  Q  *  R  *  *  K  L  G  E  G  E  P  I  G  Q  S  P  I  C  H  I  R  W  C  W  C  I  L  *  *  P  I  G  H  L  S  G  T  T  V  D  S  T  S  Y  P  R  N  Q  H  *  *  F  W  Y  F  K  K  G :   C  N  Y  E  A  I  F  I  F  T  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61098" stop="61494"/>
                    <exon start="64612" stop="64646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIAKTGSLCCVAARPHGSNAASGEWSMGPHEPYWRTNSSFSPAPSRWDFRFQPETLSFGSNDGVQLYGSSASSNSRDSRSWVRGNQLANHQYVISDGVGAYCSSPSDISPAQQWTPPAIQEINIDDFGTSRRDAITRPFSFSPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="65099" PGL_stop="65758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65099" e_stop="65758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65099" e_stop="65758" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65099" stop="65758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCGAGAGGTTTCTTTCACAAAGATCGCCTTGGAGTTCCCGACGAATTGTGAGAAGTGGAGATATGCCAGTTGCTGGGGTCCTTTCATGCCGCCATGTATTTCATGCTGAATGTTTGGAGCAAGCTACACCAAAATCATGTAAAAGTGATCCTCCATGCCCAATCTGTGCCAAGCTTGAAGAAGGTAGTTCTCCAGAGCAGCGAGTTTTCTCCAAGTTCTTTCCTAGGCTTAAACCATTCAGTGAAGAAGGACCATCCAAGCCTTGGGGTTGTGCCCATTCTGGTGATTGTGTCGAGGGGGCTTTGCACGGACCATCTCGTGGCACTATGCTCTCACTAAACAAGAACCGAATTAGGAAAAATCTTTCTTTGAAAGGTGATTCAGGCAAGGATTTTCCTGGTAAATTAAGAAAAACTAATACATTTTCGTCACAGCTTTTTATTGGATCAGTTGATCATGCAATGGTGGGATCTTCAAAAGCATCAGCAGGTTCCGGGCTGAAGTAACAACTGAATTTTGTATATAATTGCAGGCTGATGTCCGTGGCCTTTCGTGGTTGGTGTCCTAATCGTCTTAACTTCTCCTGTTTAGAATCTTTAGTGGCTTAATCATGTTGTAAAATGTAATGTGGTGGAAATTGTGTATGCACTTGAAAAAG</gDNA_template>
            <first_frame> M  R  E  V  S  F  T  K  I  A  L  E  F  P  T  N  C  E  K  W  R  Y  A  S  C  W  G  P  F  M  P  P  C  I  S  C  *  M  F  G  A  S  Y  T  K  I  M  *  K  *  S  S  M  P  N  L  C  Q  A  *  R  R  *  F  S  R  A  A  S  F  L  Q  V  L  S  *  A  *  T  I  Q  *  R  R  T  I  Q  A  L  G  L  C  P  F  W  *  L  C  R  G  G  F  A  R  T  I  S  W  H  Y  A  L  T  K  Q  E  P  N  *  E  K  S  F  F  E  R  *  F  R  Q  G  F  S  W  *  I  K  K  N  *  Y  I  F  V  T  A  F  Y  W  I  S  *  S  C  N  G  G  I  F  K  S  I  S  R  F  R  A  E  V  T  T  E  F  C  I  *  L  Q  A  D  V  R  G  L  S  W  L  V  S  *  S  S  *  L  L  L  F  R  I  F  S  G  L  I  M  L  *  N  V  M  W  W  K  L  C  M  H  L  K  K </first_frame>
            <second_frame>  C  E  R  F  L  S  Q  R  S  P  W  S  S  R  R  I  V  R  S  G  D  M  P  V  A  G  V  L  S  C  R  H  V  F  H  A  E  C  L  E  Q  A  T  P  K  S  C  K  S  D  P  P  C  P  I  C  A  K  L  E  E  G  S  S  P  E  Q  R  V  F  S  K  F  F  P  R  L  K  P  F  S  E  E  G  P  S  K  P  W  G  C  A  H  S  G  D  C  V  E  G  A  L  H  G  P  S  R  G  T  M  L  S  L  N  K  N  R  I  R  K  N  L  S  L  K  G  D  S  G  K  D  F  P  G  K  L  R  K  T  N  T  F  S  S  Q  L  F  I  G  S  V  D  H  A  M  V  G  S  S  K  A  S  A  G  S  G  L  K  *  Q  L  N  F  V  Y  N  C  R  L  M  S  V  A  F  R  G  W  C  P  N  R  L  N  F  S  C  L  E  S  L  V  A  *  S  C  C  K  M  *  C  G  G  N  C  V  C  T  *  K   </second_frame>
            <third_frame>   A  R  G  F  F  H  K  D  R  L  G  V  P  D  E  L  *  E  V  E  I  C  Q  L  L  G  S  F  H  A  A  M  Y  F  M  L  N  V  W  S  K  L  H  Q  N  H  V  K  V  I  L  H  A  Q  S  V  P  S  L  K  K  V  V  L  Q  S  S  E  F  S  P  S  S  F  L  G  L  N  H  S  V  K  K  D  H  P  S  L  G  V  V  P  I  L  V  I  V  S  R  G  L  C  T  D  H  L  V  A  L  C  S  H  *  T  R  T  E  L  G  K  I  F  L  *  K  V  I  Q  A  R  I  F  L  V  N  *  E  K  L  I  H  F  R  H  S  F  L  L  D  Q  L  I  M  Q  W  W  D  L  Q  K  H  Q  Q  V  P  G  *  S  N  N  *  I  L  Y  I  I  A  G  *  C  P  W  P  F  V  V  G  V  L  I  V  L  T  S  P  V  *  N  L  *  W  L  N  H  V  V  K  C  N  V  V  E  I  V  Y  A  L  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65100" stop="65606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CERFLSQRSPWSSRRIVRSGDMPVAGVLSCRHVFHAECLEQATPKSCKSDPPCPICAKLEEGSSPEQRVFSKFFPRLKPFSEEGPSKPWGCAHSGDCVEGALHGPSRGTMLSLNKNRIRKNLSLKGDSGKDFPGKLRKTNTFSSQLFIGSVDHAMVGSSKASAGSGLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="65830" PGL_stop="65143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65830" e_stop="65143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="65830" e_stop="65143" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65830" stop="65143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACATATATTGGTTCAATGAACAAAAAGATCAGTTAAAAACTTACACAAAAGATGCAATTTGTTTGAACCCTTTTTCAAGTGCATACACAATTTCCACCACATTACATTTTACAACATGATTAAGCCACTAAAGATTCTAAACAGGAGAAGTTAAGACGATTAGGACACCAACCACGAAAGGCCACGGACATCAGCCTGCAATTATATACAAAATTCAGTTGTTACTTCAGCCCGGAACCTGCTGATGCTTTTGAAGATCCCACCATTGCATGATCAACTGATCCAATAAAAAGCTGTGACGAAAATGTATTAGTTTTTCTTAATTTACCAGGAAAATCCTTGCCTGAATCACCTTTCAAAGAAAGATTTTTCCTAATTCGGTTCTTGTTTAGTGAGAGCATAGTGCCACGAGATGGTCCGTGCAAAGCCCCCTCGACACAATCACCAGAATGGGCACAACCCCAAGGCTTGGATGGTCCTTCTTCACTGAATGGTTTAAGCCTAGGAAAGAACTTGGAGAAAACTCGCTGCTCTGGAGAACTACCTTCTTCAAGCTTGGCACAGATTGGGCATGGAGGATCACTTTTACATGATTTTGGTGTAGCTTGCTCCAAACATTCAGCATGAAATACATGGCGGCATGAAAGGACCCCAGCAACTGGCATATCTCCACTTCTCACAATTC</gDNA_template>
            <first_frame> P  T  Y  I  G  S  M  N  K  K  I  S  *  K  L  T  Q  K  M  Q  F  V  *  T  L  F  Q  V  H  T  Q  F  P  P  H  Y  I  L  Q  H  D  *  A  T  K  D  S  K  Q  E  K  L  R  R  L  G  H  Q  P  R  K  A  T  D  I  S  L  Q  L  Y  T  K  F  S  C  Y  F  S  P  E  P  A  D  A  F  E  D  P  T  I  A  *  S  T  D  P  I  K  S  C  D  E  N  V  L  V  F  L  N  L  P  G  K  S  L  P  E  S  P  F  K  E  R  F  F  L  I  R  F  L  F  S  E  S  I  V  P  R  D  G  P  C  K  A  P  S  T  Q  S  P  E  W  A  Q  P  Q  G  L  D  G  P  S  S  L  N  G  L  S  L  G  K  N  L  E  K  T  R  C  S  G  E  L  P  S  S  S  L  A  Q  I  G  H  G  G  S  L  L  H  D  F  G  V  A  C  S  K  H  S  A  *  N  T  W  R  H  E  R  T  P  A  T  G  I  S  P  L  L  T  I  </first_frame>
            <second_frame>  P  H  I  L  V  Q  *  T  K  R  S  V  K  N  L  H  K  R  C  N  L  F  E  P  F  F  K  C  I  H  N  F  H  H  I  T  F  Y  N  M  I  K  P  L  K  I  L  N  R  R  S  *  D  D  *  D  T  N  H  E  R  P  R  T  S  A  C  N  Y  I  Q  N  S  V  V  T  S  A  R  N  L  L  M  L  L  K  I  P  P  L  H  D  Q  L  I  Q  *  K  A  V  T  K  M  Y  *  F  F  L  I  Y  Q  E  N  P  C  L  N  H  L  S  K  K  D  F  S  *  F  G  S  C  L  V  R  A  *  C  H  E  M  V  R  A  K  P  P  R  H  N  H  Q  N  G  H  N  P  K  A  W  M  V  L  L  H  *  M  V  *  A  *  E  R  T  W  R  K  L  A  A  L  E  N  Y  L  L  Q  A  W  H  R  L  G  M  E  D  H  F  Y  M  I  L  V  *  L  A  P  N  I  Q  H  E  I  H  G  G  M  K  G  P  Q  Q  L  A  Y  L  H  F  S  Q  F </second_frame>
            <third_frame>   H  I  Y  W  F  N  E  Q  K  D  Q  L  K  T  Y  T  K  D  A  I  C  L  N  P  F  S  S  A  Y  T  I  S  T  T  L  H  F  T  T  *  L  S  H  *  R  F  *  T  G  E  V  K  T  I  R  T  P  T  T  K  G  H  G  H  Q  P  A  I  I  Y  K  I  Q  L  L  L  Q  P  G  T  C  *  C  F  *  R  S  H  H  C  M  I  N  *  S  N  K  K  L  *  R  K  C  I  S  F  S  *  F  T  R  K  I  L  A  *  I  T  F  Q  R  K  I  F  P  N  S  V  L  V  *  *  E  H  S  A  T  R  W  S  V  Q  S  P  L  D  T  I  T  R  M  G  T  T  P  R  L  G  W  S  F  F  T  E  W  F  K  P  R  K  E  L  G  E  N  S  L  L  W  R  T  T  F  F  K  L  G  T  D  W  A  W  R  I  T  F  T  *  F  W  C  S  L  L  Q  T  F  S  M  K  Y  M  A  A  *  K  D  P  S  N  W  H  I  S  T  S  H  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65554" stop="65201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STDPIKSCDENVLVFLNLPGKSLPESPFKERFFLIRFLFSESIVPRDGPCKAPSTQSPEWAQPQGLDGPSSLNGLSLGKNLEKTRCSGELPSSSLAQIGHGGSLLHDFGVACSKHSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="83660" PGL_stop="86509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83660" e_stop="83807"/>
            <exon e_start="84212" e_stop="84346"/>
            <exon e_start="84439" e_stop="84751"/>
            <exon e_start="85629" e_stop="86509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.960" e_score="0.905"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.963"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="83660" e_stop="83807" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.960">
            <gDNA_intron_boundary i_start="83808" i_stop="84211" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="84212" e_stop="84346" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84347" i_stop="84438" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84439" e_stop="84751" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="84752" i_stop="85628" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="85629" e_stop="86509" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83660" stop="83807"/>
              <exon start="84212" stop="84346"/>
              <exon start="84439" stop="84643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84265" stop="84346"/>
              <exon start="84439" stop="84751"/>
              <exon start="85629" stop="86509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84702" stop="84751"/>
              <exon start="85629" stop="86135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86085" stop="86509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAGCTTAAAGGCCAAACACCCCTTAAAATCCCTATTTATATCCCCCTAAATCCCTCCCAATTTTCCACACCCAACTCCCATTTTCACTCTTCATTTGCTTAGTCACTACATTCCCTCTTGCTAGAGTCAAGGCTCACTCTCCAAA : GAAACATGGCTTATTTTGGGATTTGCTTTGTTGGTCTTCTTGCAATGGTGTCATCTGTTTATGGTTATGGTGGAGGAGGTTGGATTGATGCTCATGCAACTTTTTATGGGGGTGGTGATGCTTCTGGAACAATGG : GTGGGGCTTGTGGATATGGGAATCTTTATAGTCAAGGGTATGGCACAAATACAGCAGCTTTAAGTACTGCTATGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTTTGAATTAAGGTGTGTAAATGACAGACAAGGGTGTTTGCCTGGTTCTATTGTGGTTACTGCTACAAATTTTTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGTAATCCTCCACTTCACCATTTTGACCTCTCTCAGCCTATTTTCCAACACATTGCTCATTACAAAGCTGGAATTGTCCCTGTTGCTTATAGAAG : GGTACCCTGTAGAAGAAGGGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTACTAGTAACAAATGTTGGTGGTGGTGGTGATGTTCATTCAGTAGCTGTTAAAGGATCAAGAACAGGTTGGCAGCCAATGTCAAGAAACTGGGGACAAAACTGGCAAAACAACAACAACCTTAATGGACAAACACTATCATTTAAGGTTACAACAGGTGATGGTAGAAGTTTGATCTCATACAATGTTGCACCTGCTCACTGGTCATTTGGACAGACATATACTGGTGCTCAATTCCACTAAAAAAAGGCATTAAATGGGGTTTTTTTTTTCTTCAAGTTTTTGAAAGTATATTTACTAGAATTACTATTATCATTACTAGTATTAGTATGCATACTGATTTGGTCACTAGTATTAGTATTGTGACTATTTAGTATAGAGGTATTTTGGTTGTAAAGGTGTGGTCTTTAAGGTAAAAAAAAATGAAAAAAGGGCATATTTTAAAATTGTCCTCTTTTTCATTTTGATTGAATTAAGGGTATCTTACTTTTGGGGACCCTAATTCTTGAGGCCACACTTAGTAGTTTTTTTTGGTTTTGGAGGGTATTTTGGTAATTTTTCCTTCTGTTAAGGGCAGAAGTGGAAAGCAGTGGTGGACTTTTACCACCCGCAGTTGGTAGGTGGGGGTGGGGGTGGGGTGGGGTGGGGGTATTTTTGGCAACTTTTTTTTTAAGCTTCAGCCTGTAGCTGAAGATGGACTTTGTATGTGTGAGACTATGAAATGTAAAGAACCATTTAACTAGTAATGATTCAAGAAGATTATGGTTATGTATTTTAACTTTTGTAATGCCTCTCTCGGTTTTAATTTGTTTGACAG</gDNA_template>
            <first_frame> H  K  L  K  G  Q  T  P  L  K  I  P  I  Y  I  P  L  N  P  S  Q  F  S  T  P  N  S  H  F  H  S  S  F  A  *  S  L  H  S  L  L  L  E  S  R  L  T  L  Q   : R  N  M  A  Y  F  G  I  C  F  V  G  L  L  A  M  V  S  S  V  Y  G  Y  G  G  G  G  W  I  D  A  H  A  T  F  Y  G  G  G  D  A  S  G  T  M   : G  G  A  C  G  Y  G  N  L  Y  S  Q  G  Y  G  T  N  T  A  A  L  S  T  A  M  F  N  N  G  L  S  C  G  S  C  F  E  L  R  C  V  N  D  R  Q  G  C  L  P  G  S  I  V  V  T  A  T  N  F  C  P  P  N  N  A  L  P  N  N  A  G  G  W  C  N  P  P  L  H  H  F  D  L  S  Q  P  I  F  Q  H  I  A  H  Y  K  A  G  I  V  P  V  A  Y  R  R :   V  P  C  R  R  R  G  G  I  R  F  T  I  N  G  H  S  Y  F  N  L  V  L  V  T  N  V  G  G  G  G  D  V  H  S  V  A  V  K  G  S  R  T  G  W  Q  P  M  S  R  N  W  G  Q  N  W  Q  N  N  N  N  L  N  G  Q  T  L  S  F  K  V  T  T  G  D  G  R  S  L  I  S  Y  N  V  A  P  A  H  W  S  F  G  Q  T  Y  T  G  A  Q  F  H  *  K  K  A  L  N  G  V  F  F  F  F  K  F  L  K  V  Y  L  L  E  L  L  L  S  L  L  V  L  V  C  I  L  I  W  S  L  V  L  V  L  *  L  F  S  I  E  V  F  W  L  *  R  C  G  L  *  G  K  K  K  *  K  K  G  I  F  *  N  C  P  L  F  H  F  D  *  I  K  G  I  L  L  L  G  T  L  I  L  E  A  T  L  S  S  F  F  W  F  W  R  V  F  W  *  F  F  L  L  L  R  A  E  V  E  S  S  G  G  L  L  P  P  A  V  G  R  W  G  W  G  W  G  G  V  G  V  F  L  A  T  F  F  L  S  F  S  L  *  L  K  M  D  F  V  C  V  R  L  *  N  V  K  N  H  L  T  S  N  D  S  R  R  L  W  L  C  I  L  T  F  V  M  P  L  S  V  L  I  C  L  T  </first_frame>
            <second_frame>  T  S  L  K  A  K  H  P  L  K  S  L  F  I  S  P  *  I  P  P  N  F  P  H  P  T  P  I  F  T  L  H  L  L  S  H  Y  I  P  S  C  *  S  Q  G  S  L  S  K  :  E  T  W  L  I  L  G  F  A  L  L  V  F  L  Q  W  C  H  L  F  M  V  M  V  E  E  V  G  L  M  L  M  Q  L  F  M  G  V  V  M  L  L  E  Q  W  :  V  G  L  V  D  M  G  I  F  I  V  K  G  M  A  Q  I  Q  Q  L  *  V  L  L  C  S  T  M  G  *  A  V  V  L  V  L  N  *  G  V  *  M  T  D  K  G  V  C  L  V  L  L  W  L  L  L  Q  I  F  A  H  Q  T  M  P  S  L  I  M  Q  V  A  G  V  I  L  H  F  T  I  L  T  S  L  S  L  F  S  N  T  L  L  I  T  K  L  E  L  S  L  L  L  I  E   : G  Y  P  V  E  E  G  E  E  *  G  S  Q  S  M  D  T  H  T  S  T  *  Y  *  *  Q  M  L  V  V  V  V  M  F  I  Q  *  L  L  K  D  Q  E  Q  V  G  S  Q  C  Q  E  T  G  D  K  T  G  K  T  T  T  T  L  M  D  K  H  Y  H  L  R  L  Q  Q  V  M  V  E  V  *  S  H  T  M  L  H  L  L  T  G  H  L  D  R  H  I  L  V  L  N  S  T  K  K  R  H  *  M  G  F  F  F  S  S  S  F  *  K  Y  I  Y  *  N  Y  Y  Y  H  Y  *  Y  *  Y  A  Y  *  F  G  H  *  Y  *  Y  C  D  Y  L  V  *  R  Y  F  G  C  K  G  V  V  F  K  V  K  K  N  E  K  R  A  Y  F  K  I  V  L  F  F  I  L  I  E  L  R  V  S  Y  F  W  G  P  *  F  L  R  P  H  L  V  V  F  F  G  F  G  G  Y  F  G  N  F  S  F  C  *  G  Q  K  W  K  A  V  V  D  F  Y  H  P  Q  L  V  G  G  G  G  G  G  V  G  W  G  Y  F  W  Q  L  F  F  *  A  S  A  C  S  *  R  W  T  L  Y  V  *  D  Y  E  M  *  R  T  I  *  L  V  M  I  Q  E  D  Y  G  Y  V  F  *  L  L  *  C  L  S  R  F  *  F  V  *  Q </second_frame>
            <third_frame>   Q  A  *  R  P  N  T  P  *  N  P  Y  L  Y  P  P  K  S  L  P  I  F  H  T  Q  L  P  F  S  L  F  I  C  L  V  T  T  F  P  L  A  R  V  K  A  H  S  P  K :   K  H  G  L  F  W  D  L  L  C  W  S  S  C  N  G  V  I  C  L  W  L  W  W  R  R  L  D  *  C  S  C  N  F  L  W  G  W  *  C  F  W  N  N  G :   W  G  L  W  I  W  E  S  L  *  S  R  V  W  H  K  Y  S  S  F  K  Y  C  Y  V  Q  Q  W  V  E  L  W  F  L  F  *  I  K  V  C  K  *  Q  T  R  V  F  A  W  F  Y  C  G  Y  C  Y  K  F  L  P  T  K  Q  C  P  P  *  *  C  R  W  L  V  *  S  S  T  S  P  F  *  P  L  S  A  Y  F  P  T  H  C  S  L  Q  S  W  N  C  P  C  C  L  *  K  :  G  T  L  *  K  K  G  R  N  K  V  H  N  Q  W  T  L  I  L  Q  L  S  T  S  N  K  C  W  W  W  W  *  C  S  F  S  S  C  *  R  I  K  N  R  L  A  A  N  V  K  K  L  G  T  K  L  A  K  Q  Q  Q  P  *  W  T  N  T  I  I  *  G  Y  N  R  *  W  *  K  F  D  L  I  Q  C  C  T  C  S  L  V  I  W  T  D  I  Y  W  C  S  I  P  L  K  K  G  I  K  W  G  F  F  F  L  Q  V  F  E  S  I  F  T  R  I  T  I  I  I  T  S  I  S  M  H  T  D  L  V  T  S  I  S  I  V  T  I  *  Y  R  G  I  L  V  V  K  V  W  S  L  R  *  K  K  M  K  K  G  H  I  L  K  L  S  S  F  S  F  *  L  N  *  G  Y  L  T  F  G  D  P  N  S  *  G  H  T  *  *  F  F  L  V  L  E  G  I  L  V  I  F  P  S  V  K  G  R  S  G  K  Q  W  W  T  F  T  T  R  S  W  *  V  G  V  G  V  G  W  G  G  G  I  F  G  N  F  F  F  K  L  Q  P  V  A  E  D  G  L  C  M  C  E  T  M  K  C  K  E  P  F  N  *  *  *  F  K  K  I  M  V  M  Y  F  N  F  C  N  A  S  L  G  F  N  L  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83765" stop="83807"/>
                    <exon start="84212" stop="84346"/>
                    <exon start="84439" stop="84751"/>
                    <exon start="85629" stop="85935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHSLLLESRLTLQRNMAYFGICFVGLLAMVSSVYGYGGGGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCFELRCVNDRQGCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQHIAHYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGGGDVHSVAVKGSRTGWQPMSRNWGQNWQNNNNLNGQTLSFKVTTGDGRSLISYNVAPAHWSFGQTYTGAQFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="91387" PGL_stop="92414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91387" e_stop="92414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91387" e_stop="92414" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="92123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="92087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="92074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="92062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="91936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91387" stop="91913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91611" stop="92414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTGTTGATAAAACTCCAAACACAAAGCATGCAAAAAGAGTCCTTTCTTCTTCAATGTTACTTCAGCTACCTGAGATGCTAACATGGATAAACCCTCCCAAAACCCTAATCCCCTTTTCTTCCATCATCCCAAACCCTTCTTCTCCAATACCCATTTGCTCAATTTCTCCAAAACCCACAAAAACTTCACTCAAATCCCTTCACCTTTCTCCTCAGCACACCCTTACTTCAACTGACTGTGGTCTCAAATTCAGGGAGAAAATACTCTATCTTCAAGAACTCAATATCAATCCCAGTAAAGTTCTTCAACTAAACCCCCATTTACGATCAGCAACGCTCGATTCAATCAGATCTGTTGAAGTATGTCTGTTTTCAATGGGGATTGAACGGTCGGCAATTGGTCGAATACTTGATATGCATCCTCAGCTTTTAACCTCCGACCCATATATCCACCTTTACCCAATTTTCGATTTCTTGTTAAACGACGTCGTTATCCCTTTCCATGACATTCGGAAATCCATTATCCGATGTCCGAGAATTCTTGTTTGTAGTGTTGAAGATCAATTGAAACCCACATTTGAGTTTTTGAAGGAATTTGGGTTTGTGGGTCAGAATCGAATTACTTGTCAGACTACTGTTTTGCTTGTGTCCAGTGTTGAGCTAACTTTGAACCCTAAAATTGATTACATGTTGAGTTTGGGATTTGAACTCGATGATGTGGCTAATATGGTTTTGAGATCACCTGGGTTGTTGACATTTAGTATTGAGAAAAACTTTAGGCCAAAAGTTGAGTATTTTTTGAAGGAGATGAATGGGGATATAAGGGAATTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGTTTGGAGAGGAAGATTAAGCCTCGGCATAGGCTTTTGGTGGAGCATGGGTTTACGCTGTCTTTATCGGAGATGTTGAAGGTTAGTGATGGAGAATTCAATGCCAGATTGATTGAAATGCGATTGAGGTTAGTGGATGATAAGCAAATGTAGTACGTAATTAACTC</gDNA_template>
            <first_frame> I  F  V  D  K  T  P  N  T  K  H  A  K  R  V  L  S  S  S  M  L  L  Q  L  P  E  M  L  T  W  I  N  P  P  K  T  L  I  P  F  S  S  I  I  P  N  P  S  S  P  I  P  I  C  S  I  S  P  K  P  T  K  T  S  L  K  S  L  H  L  S  P  Q  H  T  L  T  S  T  D  C  G  L  K  F  R  E  K  I  L  Y  L  Q  E  L  N  I  N  P  S  K  V  L  Q  L  N  P  H  L  R  S  A  T  L  D  S  I  R  S  V  E  V  C  L  F  S  M  G  I  E  R  S  A  I  G  R  I  L  D  M  H  P  Q  L  L  T  S  D  P  Y  I  H  L  Y  P  I  F  D  F  L  L  N  D  V  V  I  P  F  H  D  I  R  K  S  I  I  R  C  P  R  I  L  V  C  S  V  E  D  Q  L  K  P  T  F  E  F  L  K  E  F  G  F  V  G  Q  N  R  I  T  C  Q  T  T  V  L  L  V  S  S  V  E  L  T  L  N  P  K  I  D  Y  M  L  S  L  G  F  E  L  D  D  V  A  N  M  V  L  R  S  P  G  L  L  T  F  S  I  E  K  N  F  R  P  K  V  E  Y  F  L  K  E  M  N  G  D  I  R  E  L  K  R  F  P  Q  Y  F  S  F  S  L  E  R  K  I  K  P  R  H  R  L  L  V  E  H  G  F  T  L  S  L  S  E  M  L  K  V  S  D  G  E  F  N  A  R  L  I  E  M  R  L  R  L  V  D  D  K  Q  M  *  Y  V  I  N   </first_frame>
            <second_frame>  S  L  L  I  K  L  Q  T  Q  S  M  Q  K  E  S  F  L  L  Q  C  Y  F  S  Y  L  R  C  *  H  G  *  T  L  P  K  P  *  S  P  F  L  P  S  S  Q  T  L  L  L  Q  Y  P  F  A  Q  F  L  Q  N  P  Q  K  L  H  S  N  P  F  T  F  L  L  S  T  P  L  L  Q  L  T  V  V  S  N  S  G  R  K  Y  S  I  F  K  N  S  I  S  I  P  V  K  F  F  N  *  T  P  I  Y  D  Q  Q  R  S  I  Q  S  D  L  L  K  Y  V  C  F  Q  W  G  L  N  G  R  Q  L  V  E  Y  L  I  C  I  L  S  F  *  P  P  T  H  I  S  T  F  T  Q  F  S  I  S  C  *  T  T  S  L  S  L  S  M  T  F  G  N  P  L  S  D  V  R  E  F  L  F  V  V  L  K  I  N  *  N  P  H  L  S  F  *  R  N  L  G  L  W  V  R  I  E  L  L  V  R  L  L  F  C  L  C  P  V  L  S  *  L  *  T  L  K  L  I  T  C  *  V  W  D  L  N  S  M  M  W  L  I  W  F  *  D  H  L  G  C  *  H  L  V  L  R  K  T  L  G  Q  K  L  S  I  F  *  R  R  *  M  G  I  *  G  N  *  R  G  F  L  S  T  F  R  L  V  W  R  G  R  L  S  L  G  I  G  F  W  W  S  M  G  L  R  C  L  Y  R  R  C  *  R  L  V  M  E  N  S  M  P  D  *  L  K  C  D  *  G  *  W  M  I  S  K  C  S  T  *  L  T  </second_frame>
            <third_frame>   L  C  *  *  N  S  K  H  K  A  C  K  K  S  P  F  F  F  N  V  T  S  A  T  *  D  A  N  M  D  K  P  S  Q  N  P  N  P  L  F  F  H  H  P  K  P  F  F  S  N  T  H  L  L  N  F  S  K  T  H  K  N  F  T  Q  I  P  S  P  F  S  S  A  H  P  Y  F  N  *  L  W  S  Q  I  Q  G  E  N  T  L  S  S  R  T  Q  Y  Q  S  Q  *  S  S  S  T  K  P  P  F  T  I  S  N  A  R  F  N  Q  I  C  *  S  M  S  V  F  N  G  D  *  T  V  G  N  W  S  N  T  *  Y  A  S  S  A  F  N  L  R  P  I  Y  P  P  L  P  N  F  R  F  L  V  K  R  R  R  Y  P  F  P  *  H  S  E  I  H  Y  P  M  S  E  N  S  C  L  *  C  *  R  S  I  E  T  H  I  *  V  F  E  G  I  W  V  C  G  S  E  S  N  Y  L  S  D  Y  C  F  A  C  V  Q  C  *  A  N  F  E  P  *  N  *  L  H  V  E  F  G  I  *  T  R  *  C  G  *  Y  G  F  E  I  T  W  V  V  D  I  *  Y  *  E  K  L  *  A  K  S  *  V  F  F  E  G  D  E  W  G  Y  K  G  I  E  E  V  S  S  V  L  F  V  *  F  G  E  E  D  *  A  S  A  *  A  F  G  G  A  W  V  Y  A  V  F  I  G  D  V  E  G  *  *  W  R  I  Q  C  Q  I  D  *  N  A  I  E  V  S  G  *  *  A  N  V  V  R  N  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91387" stop="92400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVDKTPNTKHAKRVLSSSMLLQLPEMLTWINPPKTLIPFSSIIPNPSSPIPICSISPKPTKTSLKSLHLSPQHTLTSTDCGLKFREKILYLQELNINPSKVLQLNPHLRSATLDSIRSVEVCLFSMGIERSAIGRILDMHPQLLTSDPYIHLYPIFDFLLNDVVIPFHDIRKSIIRCPRILVCSVEDQLKPTFEFLKEFGFVGQNRITCQTTVLLVSSVELTLNPKIDYMLSLGFELDDVANMVLRSPGLLTFSIEKNFRPKVEYFLKEMNGDIRELKRFPQYFSFSLERKIKPRHRLLVEHGFTLSLSEMLKVSDGEFNARLIEMRLRLVDDKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="92463" PGL_stop="92064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92463" e_stop="92064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="92463" e_stop="92064" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92463" stop="92064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTAATGAGTCTCCAACATAGACAAACTCGACTCTAACCATAGAAAAAGAGTTAATTACGTACTACATTTGCTTATCATCCACTAACCTCAATCGCATTTCAATCAATCTGGCATTGAATTCTCCATCACTAACCTTCAACATCTCCGATAAAGACAGCGTAAACCCATGCTCCACCAAAAGCCTATGCCGAGGCTTAATCTTCCTCTCCAAACTAAACGAAAAGTACTGAGGAAACCTCTTCAATTCCCTTATATCCCCATTCATCTCCTTCAAAAAATACTCAACTTTTGGCCTAAAGTTTTTCTCAATACTAAATGTCAACAACCCAGGTGATCTCAAAACCATATTAGCCACATCATCGAGTTCAAATCCCAAACTCAACATGTAATCAATTTTA</gDNA_template>
            <first_frame> L  *  *  V  S  N  I  D  K  L  D  S  N  H  R  K  R  V  N  Y  V  L  H  L  L  I  I  H  *  P  Q  S  H  F  N  Q  S  G  I  E  F  S  I  T  N  L  Q  H  L  R  *  R  Q  R  K  P  M  L  H  Q  K  P  M  P  R  L  N  L  P  L  Q  T  K  R  K  V  L  R  K  P  L  Q  F  P  Y  I  P  I  H  L  L  Q  K  I  L  N  F  W  P  K  V  F  L  N  T  K  C  Q  Q  P  R  *  S  Q  N  H  I  S  H  I  I  E  F  K  S  Q  T  Q  H  V  I  N  F  </first_frame>
            <second_frame>  S  N  E  S  P  T  *  T  N  S  T  L  T  I  E  K  E  L  I  T  Y  Y  I  C  L  S  S  T  N  L  N  R  I  S  I  N  L  A  L  N  S  P  S  L  T  F  N  I  S  D  K  D  S  V  N  P  C  S  T  K  S  L  C  R  G  L  I  F  L  S  K  L  N  E  K  Y  *  G  N  L  F  N  S  L  I  S  P  F  I  S  F  K  K  Y  S  T  F  G  L  K  F  F  S  I  L  N  V  N  N  P  G  D  L  K  T  I  L  A  T  S  S  S  S  N  P  K  L  N  M  *  S  I  L </second_frame>
            <third_frame>   L  M  S  L  Q  H  R  Q  T  R  L  *  P  *  K  K  S  *  L  R  T  T  F  A  Y  H  P  L  T  S  I  A  F  Q  S  I  W  H  *  I  L  H  H  *  P  S  T  S  P  I  K  T  A  *  T  H  A  P  P  K  A  Y  A  E  A  *  S  S  S  P  N  *  T  K  S  T  E  E  T  S  S  I  P  L  Y  P  H  S  S  P  S  K  N  T  Q  L  L  A  *  S  F  S  Q  Y  *  M  S  T  T  Q  V  I  S  K  P  Y  *  P  H  H  R  V  Q  I  P  N  S  T  C  N  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92441" stop="92232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSTLTIEKELITYYICLSSTNLNRISINLALNSPSLTFNISDKDSVNPCSTKSLCRGLIFLSKLNEKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="94720" PGL_stop="95506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94720" e_stop="95054"/>
            <exon e_start="95329" e_stop="95506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.893"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="94720" e_stop="95054" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95055" i_stop="95328" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="95329" e_stop="95506" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94720" stop="95054"/>
              <exon start="95329" stop="95506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGATTCAATTCCAAAAGAACTCTTGAGAGCTATAGAAGATTCTCAAGTTGCACTTATCATTTTCTCAAAGAATTATGCTACATCTAGGTGGTGCTTGAATGAACTAGTGAAGATCATGGAATGCAAAGAGGAAGAAAATGGACAAACAGTCATACCGATCTTTTATAATGTGGATCCATCACATGTTCGATACCAAACTGAAAGCTTTGGAGCAGCATTTGCCAAACACGAATCAAAGTATAAGGATGATGTTGAGGGGATGCAGAAGGTGCAAAGATGGAGAACTGCCCTAACTGCTGCCGCAAATCTAAAAGGATATGATATCCGTAACGG : GATTGAATCAGAGAATATTCAGCAGATCGTAGATTGCATCTCTTCCAAATTTTGTACGAATGCTTATTCTTTATCTTTTTTGCAAGATATTGTGGGAATAAATGCTCACTTAGAGAAACTAAAATCGAAACTTCAAATAGAAATCAATGATGTTCGGATTTTAGGGATCTGGGGAATA</gDNA_template>
            <first_frame> G  D  S  I  P  K  E  L  L  R  A  I  E  D  S  Q  V  A  L  I  I  F  S  K  N  Y  A  T  S  R  W  C  L  N  E  L  V  K  I  M  E  C  K  E  E  E  N  G  Q  T  V  I  P  I  F  Y  N  V  D  P  S  H  V  R  Y  Q  T  E  S  F  G  A  A  F  A  K  H  E  S  K  Y  K  D  D  V  E  G  M  Q  K  V  Q  R  W  R  T  A  L  T  A  A  A  N  L  K  G  Y  D  I  R  N  G :   I  E  S  E  N  I  Q  Q  I  V  D  C  I  S  S  K  F  C  T  N  A  Y  S  L  S  F  L  Q  D  I  V  G  I  N  A  H  L  E  K  L  K  S  K  L  Q  I  E  I  N  D  V  R  I  L  G  I  W  G  I </first_frame>
            <second_frame>  E  I  Q  F  Q  K  N  S  *  E  L  *  K  I  L  K  L  H  L  S  F  S  Q  R  I  M  L  H  L  G  G  A  *  M  N  *  *  R  S  W  N  A  K  R  K  K  M  D  K  Q  S  Y  R  S  F  I  M  W  I  H  H  M  F  D  T  K  L  K  A  L  E  Q  H  L  P  N  T  N  Q  S  I  R  M  M  L  R  G  C  R  R  C  K  D  G  E  L  P  *  L  L  P  Q  I  *  K  D  M  I  S  V  T   : G  L  N  Q  R  I  F  S  R  S  *  I  A  S  L  P  N  F  V  R  M  L  I  L  Y  L  F  C  K  I  L  W  E  *  M  L  T  *  R  N  *  N  R  N  F  K  *  K  S  M  M  F  G  F  *  G  S  G  E   </second_frame>
            <third_frame>   R  F  N  S  K  R  T  L  E  S  Y  R  R  F  S  S  C  T  Y  H  F  L  K  E  L  C  Y  I  *  V  V  L  E  *  T  S  E  D  H  G  M  Q  R  G  R  K  W  T  N  S  H  T  D  L  L  *  C  G  S  I  T  C  S  I  P  N  *  K  L  W  S  S  I  C  Q  T  R  I  K  V  *  G  *  C  *  G  D  A  E  G  A  K  M  E  N  C  P  N  C  C  R  K  S  K  R  I  *  Y  P  *  R  :  D  *  I  R  E  Y  S  A  D  R  R  L  H  L  F  Q  I  L  Y  E  C  L  F  F  I  F  F  A  R  Y  C  G  N  K  C  S  L  R  E  T  K  I  E  T  S  N  R  N  Q  *  C  S  D  F  R  D  L  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94720" stop="95054"/>
                    <exon start="95329" stop="95506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDSIPKELLRAIEDSQVALIIFSKNYATSRWCLNELVKIMECKEEENGQTVIPIFYNVDPSHVRYQTESFGAAFAKHESKYKDDVEGMQKVQRWRTALTAAANLKGYDIRNGIESENIQQIVDCISSKFCTNAYSLSFLQDIVGINAHLEKLKSKLQIEINDVRILGIWGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="95892" PGL_stop="96490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95892" e_stop="96490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="95892" e_stop="96490" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95892" stop="96490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468081" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATGAAGCTATGCAATTATTCAATATGCATGCTTTTAAAAAAGAAGTTCCAAATGAGGATTTTAAGGAGTTGGCGTTAGAGATAGTAAATCACGCTAAAGGCCTCCCTTTAGCCCTCAAGGTGTGGGGCTGTTTATTGCATAAAAAAAATCTCTCTTTATGGAAAATAACAGTAGAGCAAATAAAGAAAGACTCTAATTCAGAAATTGTTGAACAACTCAAAATAAGTTATGATGGGTTGGAGTCCGAAGAGCAGGAAATATTTTTAGATATAGCATGTTTCTTCCGCGGAGAGAAAAGAAAAGAGGTCATGCAAATTCTTAAGAGTTGTGACTTTGGAGCTGAATACGGATTGGATGTTCTGATTAATAAATCTCTTGTGTTCATATCTGAAAATGACAGGATTGAAATGCATGATTTGATTAGAGATATGGGTAGATATGTGGTGAAAATGCAAAAGCTTCAGAAAAAACGTAGCAGAATATGGGATGTTGAAGATTTCAAAGAAGTGATGATAGACTATACGGTAAGTAAGCTTAACAATGCAATGATATTTAATTTCTAATTTTTATATTCCAAGGAACTTATAGGCTAATCA</gDNA_template>
            <first_frame> I  M  K  L  C  N  Y  S  I  C  M  L  L  K  K  K  F  Q  M  R  I  L  R  S  W  R  *  R  *  *  I  T  L  K  A  S  L  *  P  S  R  C  G  A  V  Y  C  I  K  K  I  S  L  Y  G  K  *  Q  *  S  K  *  R  K  T  L  I  Q  K  L  L  N  N  S  K  *  V  M  M  G  W  S  P  K  S  R  K  Y  F  *  I  *  H  V  S  S  A  E  R  K  E  K  R  S  C  K  F  L  R  V  V  T  L  E  L  N  T  D  W  M  F  *  L  I  N  L  L  C  S  Y  L  K  M  T  G  L  K  C  M  I  *  L  E  I  W  V  D  M  W  *  K  C  K  S  F  R  K  N  V  A  E  Y  G  M  L  K  I  S  K  K  *  *  *  T  I  R  *  V  S  L  T  M  Q  *  Y  L  I  S  N  F  Y  I  P  R  N  L  *  A  N   </first_frame>
            <second_frame>  S  *  S  Y  A  I  I  Q  Y  A  C  F  *  K  R  S  S  K  *  G  F  *  G  V  G  V  R  D  S  K  S  R  *  R  P  P  F  S  P  Q  G  V  G  L  F  I  A  *  K  K  S  L  F  M  E  N  N  S  R  A  N  K  E  R  L  *  F  R  N  C  *  T  T  Q  N  K  L  *  W  V  G  V  R  R  A  G  N  I  F  R  Y  S  M  F  L  P  R  R  E  K  K  R  G  H  A  N  S  *  E  L  *  L  W  S  *  I  R  I  G  C  S  D  *  *  I  S  C  V  H  I  *  K  *  Q  D  *  N  A  *  F  D  *  R  Y  G  *  I  C  G  E  N  A  K  A  S  E  K  T  *  Q  N  M  G  C  *  R  F  Q  R  S  D  D  R  L  Y  G  K  *  A  *  Q  C  N  D  I  *  F  L  I  F  I  F  Q  G  T  Y  R  L  I  </second_frame>
            <third_frame>   H  E  A  M  Q  L  F  N  M  H  A  F  K  K  E  V  P  N  E  D  F  K  E  L  A  L  E  I  V  N  H  A  K  G  L  P  L  A  L  K  V  W  G  C  L  L  H  K  K  N  L  S  L  W  K  I  T  V  E  Q  I  K  K  D  S  N  S  E  I  V  E  Q  L  K  I  S  Y  D  G  L  E  S  E  E  Q  E  I  F  L  D  I  A  C  F  F  R  G  E  K  R  K  E  V  M  Q  I  L  K  S  C  D  F  G  A  E  Y  G  L  D  V  L  I  N  K  S  L  V  F  I  S  E  N  D  R  I  E  M  H  D  L  I  R  D  M  G  R  Y  V  V  K  M  Q  K  L  Q  K  K  R  S  R  I  W  D  V  E  D  F  K  E  V  M  I  D  Y  T  V  S  K  L  N  N  A  M  I  F  N  F  *  F  L  Y  S  K  E  L  I  G  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0084G04.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95894" stop="96457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEAMQLFNMHAFKKEVPNEDFKELALEIVNHAKGLPLALKVWGCLLHKKNLSLWKITVEQIKKDSNSEIVEQLKISYDGLESEEQEIFLDIACFFRGEKRKEVMQILKSCDFGAEYGLDVLINKSLVFISENDRIEMHDLIRDMGRYVVKMQKLQKKRSRIWDVEDFKEVMIDYTVSKLNNAMIFNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 262 chains have been computed
$ 
$ memory statistics:
$ 577600 bytes spliced alignments in total
$ 170 spliced alignments have been stored
$ 3397 bytes was the average size of a spliced alignment
$ 34784 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1581 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 293 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:35:42
-->
