<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-02-05 14:51:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262881" ref_strand="+" ref_description="SGN-E262881 [cLEG-59-O14]">
      <seq>tttcttctacttctatagtaggatgttgtgcagaatggattgcttatggagtaatgctatttcccctattgaatttatatggtttccagctaaaatttaactattcaattctcaaagcagatagtattttagatgctagtaagacatccttctacactccatggagggatatgtaccttggaggctaatctcaaatgtattttgcacccttaatgagctgttgtttgccacaagtaatattacgttatagtctattgtcacttgacctgtaggttgttttagtaaagcttttctgtacgtcattggttgcctggtgtgtaatctatatgttatgtagcaaaataattgtgcacctcatatgctgattttcatttataaacttgctgccttcgtttcaggttttagtccttctcatttagtaagtgttccatctctgtcactttacggcagatccatgaaggtgtgtttaccttgcttaagttagcaagaactgtttttgcaattccttctagtgtatggctgtgcagagctagcacactaaacatgcaatataagaaagaggagatacatattaatttgattatcattcagaaatttgctgttagtgtctcacatgttagtgaagctggtgaactttattaaagaaaattgaatcttggcttaacgtgtgttttacattgcttatatccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7083" stop="5793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6783" g_stop="6093" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E262881" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6783" e_stop="6093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGTTGGTGAACTTTATTAAAGAAAATTGAATCTT-GCTTAACGTGTGTTTTACATTGCTTATATCCAGT</genome_strand>
        <mrna_strand>TTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGCTGGTGAACTTTATTAAAGAAAATTGAATCTTGGCTTAACGTGTGTTTTACATTGCTTATATCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305474" ref_strand="-" ref_description="SGN-E305474 [cLEX-15-N17]">
      <seq>ttttttttttnttatatgtaaatattttacttaacaaagatgcatcagatcttcatattgttacacatcttgtaaatgtgacatgcttacttgaagttaacaacttaggtatatcaggagctgtgatacattattcagcaacacatttataaattttactaaaacatgaaattaagtaattgtttatccggaaaagcttgaaaaggaaaattgaacaaattggacatcacagcttgactatgttttatgtttacttggtaagttgaaaagaaaaaaattgtcacttggaaagtattatattggcttagaaatgtcatgtttttttcccagagatatgattgactaacctccttatgttacacaaatctgatcaagtaccatattttgtactctgatgatattgatatcttttgaaggcaaagttgggacttttcctgatgtgacacaagctccaacaatcctcaggaactatcggagggggagagtctcaagggctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7849" stop="9575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8453" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9093" g_stop="9275" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="500" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E305474" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305474" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8453"/>
          <exon e_start="9093" e_stop="9275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTACTACGTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCATGTTTACTTGGAAGTCTTGCATGTTTGGGATTTATAATTTAATGGAACCTTTTATTTTAAAGAAAGATACCTCTTATTCCACCTTTATCCTTACATGTTGGAACTGAAGGTATGATATGAAGTGTACTTGTGCTGTCTATTTTCTCATGTACCATATTAATGTTTTGTCTTCACTGCATTGACATGCAGAAGCCAAACTGAAGGCACAGTCCATTAGATATCCATTCGATGATCTCTTGAGTCCGATAAACAGTTGACTGAATATCCTCCTCCATGCATAGAATTCGACGTCTCAATGGAATGTGTAGGGGATCATCTGATGGTCTGGGACTTCTGTACCTCATTTGGAAGGTTATTGCACCTGTCATCATTCTCCCTTGAAAATTTTGAAAGGGCTGTCTGTCAAAAGGGCAGCAATATTGTCCTCATATCTGAATGTCATTCAGCTTTCTTTTGAATGATAACAGTGAGTATTTCATAGCTGTACAGAGGGGAAAAGACCAAAGCTGAAGGTAATATTTGAATCATGTAATCTTGTTCCCTTTAAAGGTCAAGAATTCTCAACTTCTGAAGGATTTGTTTTTTTTCCAGACATATGATTGATTAACTTTCCCTTAAAAACAACTCTTGAAGGATGTATGTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTNTTATATGTAAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTCCCAGAGATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTGATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543995" ref_strand="-" ref_description="SGN-E543995 [TUS-66-B15](-)">
      <seq>tttcttttttttttttatatgtaaatattttacttaacaaagatgcatcagatcttcatattgttacacatcttgtaaatgtgacatgcttacttgaagttaacaacttaggtatatcaggagctgtgatacattattcagcaacacatttataaattttactaaaacatgaaattaagtaattgtttatccggaaaagcttgaaaaggaaaattgaacaaattggacatcacagcttgactatgttttatgtttacttggtaagttgaaaagaaaaaaattgtcacttggaaagtattatattggcttagaaatgtcatgtttttttcccagagatatgattgactaacctccttatgttacacaaatctgatcaagtaccatattttgtactctgatgatattgatatcttttgaaggcaaagttgggacttttcctgatgtgacacaagctccaacaatcctcaggaactatcggagggggagagtctcaagggctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7849" stop="9576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8148" g_stop="8453" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="320" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9093" g_stop="9276" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="504" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="14" polyA_stop="1"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E543995" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543995" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8148" e_stop="8453"/>
          <exon e_start="9093" e_stop="9276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCATGTTTACTTGGAAGTCTTGCATGTTTGGGATTTATAATTTAATGGAACCTTTTATTTTAAAGAAAGATACCTCTTATTCCACCTTTATCCTTACATGTTGGAACTGAAGGTATGATATGAAGTGTACTTGTGCTGTCTATTTTCTCATGTACCATATTAATGTTTTGTCTTCACTGCATTGACATGCAGAAGCCAAACTGAAGGCACAGTCCATTAGATATCCATTCGATGATCTCTTGAGTCCGATAAACAGTTGACTGAATATCCTCCTCCATGCATAGAATTCGACGTCTCAATGGAATGTGTAGGGGATCATCTGATGGTCTGGGACTTCTGTACCTCATTTGGAAGGTTATTGCACCTGTCATCATTCTCCCTTGAAAATTTTGAAAGGGCTGTCTGTCAAAAGGGCAGCAATATTGTCCTCATATCTGAATGTCATTCAGCTTTCTTTTGAATGATAACAGTGAGTATTTCATAGCTGTACAGAGGGGAAAAGACCAAAGCTGAAGGTAATATTTGAATCATGTAATCTTGTTCCCTTTAAAGGTCAAGAATTCTCAACTTCTGAAGGATTTGTTTTTTTTCCAGACATATGATTGATTAACTTTCCCTTAAAAACAACTCTTGAAGGATGTATGTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATC</genome_strand>
        <mrna_strand>TTATATGTAAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTCCCAGAGATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTGATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543996" ref_strand="-" ref_description="SGN-E543996 [TUS-66-B15]">
      <seq>ttttttttttttttttatatgtaaatattttacttaacaaagatgcatcagatcttcatattgttacacatcttgtaaatgtgacatgcttacttgaagttaacaacttaggtatatcaggagctgtgatacattattcagcaacacatttataaattttactaaaacatgaaattaagtaattgtttatccggaaaagcttgaaaaggaaaattgaacaaattggacatcacagcttgactatgttttatgtttacttggtaagttgaaaagaaaaaaattgtcacttggaaagtattatattggcttagaaatgtcatgtttttttcccagagatatgattgactaacctccttatgttacacaaatctgatcaagtaccatattttgtactctgatgatattgatatcttttgaaggcaaagttgggacttttcctgatgtgacacaagctccaacaatcctcaggaactatcggagggggagagtctcaagggctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="7849" stop="9576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8148" g_stop="8453" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="320" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9093" g_stop="9276" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="504" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="14" polyA_stop="1"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E543996" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543996" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8148" e_stop="8453"/>
          <exon e_start="9093" e_stop="9276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCATGTTTACTTGGAAGTCTTGCATGTTTGGGATTTATAATTTAATGGAACCTTTTATTTTAAAGAAAGATACCTCTTATTCCACCTTTATCCTTACATGTTGGAACTGAAGGTATGATATGAAGTGTACTTGTGCTGTCTATTTTCTCATGTACCATATTAATGTTTTGTCTTCACTGCATTGACATGCAGAAGCCAAACTGAAGGCACAGTCCATTAGATATCCATTCGATGATCTCTTGAGTCCGATAAACAGTTGACTGAATATCCTCCTCCATGCATAGAATTCGACGTCTCAATGGAATGTGTAGGGGATCATCTGATGGTCTGGGACTTCTGTACCTCATTTGGAAGGTTATTGCACCTGTCATCATTCTCCCTTGAAAATTTTGAAAGGGCTGTCTGTCAAAAGGGCAGCAATATTGTCCTCATATCTGAATGTCATTCAGCTTTCTTTTGAATGATAACAGTGAGTATTTCATAGCTGTACAGAGGGGAAAAGACCAAAGCTGAAGGTAATATTTGAATCATGTAATCTTGTTCCCTTTAAAGGTCAAGAATTCTCAACTTCTGAAGGATTTGTTTTTTTTCCAGACATATGATTGATTAACTTTCCCTTAAAAACAACTCTTGAAGGATGTATGTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATC</genome_strand>
        <mrna_strand>TTATATGTAAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTCCCAGAGATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTGATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317499" ref_strand="+" ref_description="SGN-E317499 [cTOB-17-G13]">
      <seq>gataacgtggatcaatatatgatatttctattataaaggttaggcaatatatgatcttcctgagtttgttaggatggattacttgattgtctgatgttttgtgttagttgttgaattatgtaccgacatcccttttacacccatgattcactcaccatggacgcgctagcttttacaattgaatcttgggaataatgtaagtatatacacttaatagcactagagcttacttgttttttcatggagcgaaattatggacaaaacatgtgctcccaaagacatgaagtggaagtgagaacaaatgtgatttgagtaaacaaaaaggagtaaggtaatgactactgtgctttgtgtgctctattgcctcaagatttgtgcatgtatttggtgatctatgttgatgatatgctcatcatatataatgatgaaaagaaaaagctccaacttgaagaataaccatttcagaccaagaacctagatgtattgatatacttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="11543" stop="10447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11243" g_stop="10747" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E317499" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11243" e_stop="10747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAGGTGGAAGTGAGAACAAAGGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTTCTTTGTGTGTTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGTACCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</genome_strand>
        <mrna_strand>GATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAAGTGGAAGTGAGAACAAATGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTGCTTTGTGTGCTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGCTCCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21494" stop="20391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21194" g_stop="20700" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="524"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21194" e_stop="20700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCAGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTTTTTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTTTGGTGATTCATGCCATGTTTGTGCCAACAAAGAATTACTTTCATTATATACTCCAGCACCTAAAGATGAGAAGTTGTTTATGGCGAACTCCGTTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGC</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27726" stop="28503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28026" g_stop="28202" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28026" e_stop="28202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29207" stop="30518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29507" g_stop="30218" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29507" e_stop="30218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCT-ACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29207" stop="30401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29507" g_stop="30101" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29507" e_stop="30101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCT-ACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29207" stop="30331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29507" g_stop="30031" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29507" e_stop="30031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCT-ACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29277" stop="30555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29577" g_stop="30256" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29577" e_stop="30256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29277" stop="30235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29577" g_stop="29935" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29577" e_stop="29935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29726" stop="30984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30026" g_stop="30684" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30026" e_stop="30684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31822" stop="29814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31522" g_stop="31336" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31335" i_stop="30592" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30591" g_stop="30078" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31522" e_stop="31336"/>
          <exon e_start="30591" e_stop="30078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGATTTTAATTGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAATAGAGTTATAGACCTCTAAACGTTAGAGGTAGAGGTAGTCATGGTAGAGGCCGTTATTCTGGAGTACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGAGATCAGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCCTCCTCATTTGCTAGTGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT-TT-TGT-TGTA-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29795" stop="31156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30095" g_stop="30856" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30095" e_stop="30856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29795" stop="31055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30095" g_stop="30755" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30095" e_stop="30755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="30022" stop="31164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30322" g_stop="30864" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30322" e_stop="30864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="30405" stop="31563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30705" g_stop="31263" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30705" e_stop="31263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCTGATCTCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTACTCCAGAATAACGGCCTCTACCATGACTACCTCTACCTCTAACGTTTAGAGGTCTATAACTCTATTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACAATTAAAATCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31126" stop="32443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31426" g_stop="32143" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31426" e_stop="32143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCC-GGGGATATACTTCTCCAAAAACAAACTAGAGAATGAGGCCCAAG-CATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31129" stop="32390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31429" g_stop="32090" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31429" e_stop="32090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCC-GGGGATATACTTCTCCAAAAACAAACTAGAGAATGAGGCCCAAG-CATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32447" stop="31295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32147" g_stop="31595" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32147" e_stop="31595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATG-CTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31482" stop="32515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31782" g_stop="32214" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31782" e_stop="32214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32812" stop="31921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32512" g_stop="32221" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32512" e_stop="32221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACC-G----GCCA-GACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="33457" stop="32621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33157" g_stop="32921" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33157" e_stop="32921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCAAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTATCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="-" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="32713" stop="33942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33013" g_stop="33233" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33234" i_stop="33345" i_length="112">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33346" g_stop="33642" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="515" r_length="294" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E242359" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33013" e_stop="33233"/>
          <exon e_start="33346" e_stop="33642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTTTCCTGGTGTCGGAACGTGACACTCCAATCCTCATTCTATCCTGGTGTCGAAACGTTACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCTTGGTGTCGAAACGTGACACCCAATCCATATTCTTTCCTGATACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATACTGGTACCGAAACGTGGCACTCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAATAGATTAGG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCA................................................................................................................ATATACTATCCTGGCACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="26532" stop="34673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33903" g_stop="34373" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33903" e_stop="34373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTC-CCTTCTCTTTCTTTCTGTTCTTTTCTTTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAACATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCGAGACTGGGATTTCGCAGTCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCCCGTCAAAGAGTTCAGAGACTCAATTT-CTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGATCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGCGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549391" ref_strand="+" ref_description="SGN-E549391 [TUS-69-P19]">
      <seq>aaaaaacatatccaaatccaaaatcaaaataaaatccaaaagcaatgtcaccacgaaatcttatccaatttacctttatcccatattttatttacctatatataccctttataatacctcactttttcaaaaatcacaattgtagataaataaatatcctctatatattacaaatatgaagtttttaccggaattgaggacgtgttgtggcggcgcaaccatcaagacggtgagggatgggctacctcaggtggagaaaaaggagcgggcgctagtaaatcgatcgggaagtaaacgcgtggtttctcggggaaggaaattgaggaaaatggaggattggaaaccggcgctcaacgtcatctccgaggataacgcgatcgccgacgtcgatcggtacagtttcgatcaaaatacggttggaaattccgggaataaaagggccgggaaatctggtagcgcacagaagaagttcggcgacggttactggtaactaatttctcttttttcttttcactgtttcatgtcttttttttaaccaaactattgttgctcacatgatattttccaatgttttgggcaaaattattagttttactattttctgcggatatttctagactaaattactaatcggagaatttctatttaattttgtaattcaaaaattatttttattccattttcgttatttttatcattattttactttgtaaaggataattttctttttttgtatatatgcaggaaaatgtcgtacgccgttgcgatgcctgctttctcaggatgcatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42330" stop="43724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42630" g_stop="43425" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E549391" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42630" e_stop="43425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATA-TACAAATATGAAGTTTTTACCGGAATT---GACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAATTTCTCTTTTTTCTTTTTCTTTTTCTTTTCACTGTTTCATGACTTTTTTTTTAACCAAACTA---TTGCTCACATGATATTTTCCAATGTTTTGGGCCAAATTATTAGTTTTACTA-----T-C-GATATTTCTAGACTAAATTATTAATCGGAGAATTTTTATTTAA-TCTGTAATTCAAAAATTATTTTTATTCCTTTTTAGTTGTTTTTATTATTATTTTACTTTGGAGAGGATAATTTATTTTTTTTTGGTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTT</genome_strand>
        <mrna_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCACGAAATCTTATCCAATTTACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCAAAAATCACAA-T-TGTAGATAAATAAATATCCTCTATATATTACAAATATGAAGTTTTTACCGGAATTGAGGACGTGTTGTGGCGGCGCAACCATCAAGACGGTGAGGGATGGGCTACCTCAGGTGGAGAAAAAGGAGCGGGCGCTAGTAAATCGATCGGGAAGTAAACGCGTGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACGTCGATCGGTACAGTTTCGATCAAAATACGGTTGGAAATTCCGGGAATAAAAGGGCCGGGAAATCTGGTAGCGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAA-TT-TC-----TC----T-TTTTTCTTTTCACTGTTTCATGTC-TTTTTTTTAACCAAACTATTGTTGCTCACATGATATTTTCCAATGTTTTGGGCAAAATTATTAGTTTTACTATTTTCTGCGGATATTTCTAGACTAAATTACTAATCGGAGAATTTCTATTTAATTTTGTAATTCAAAAATTATTTTTATTCCATTTTCGTTATTTTTATCATTATTTTACTTTGTAAAGGATAATTT-TCTTTTTTT-GTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGG-ATGCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546665" ref_strand="+" ref_description="SGN-E546665 [TUS-70-C9]">
      <seq>aaaaaacatatccaaatccaaaatcaaaataaaatccaaaagcaatgtcaccacgaaatcttatccaatttacctttatcccatattttatttacctatatataccctttataatacctcactttttcaaaaatcacaattgtagataaataaatatcctctatatattacaaatatgaagtttttaccggaattgaggacgtgttgtggcggcgcaaccatcaagacggtgagggatgggctacctcaggtggagaaaaaggagcgggcgctagtaaatcgatcgggaagtaaacgcgtggtttctcggggaaggaaattgaggaaaatggaggattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42330" stop="43269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42630" g_stop="42969" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E546665" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42630" e_stop="42969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATA-TACAAATATGAAGTTTTTACCGGAATT---GACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAA</genome_strand>
        <mrna_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCACGAAATCTTATCCAATTTACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCAAAAATCACAA-T-TGTAGATAAATAAATATCCTCTATATATTACAAATATGAAGTTTTTACCGGAATTGAGGACGTGTTGTGGCGGCGCAACCATCAAGACGGTGAGGGATGGGCTACCTCAGGTGGAGAAAAAGGAGCGGGCGCTAGTAAATCGATCGGGAAGTAAACGCGTGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546565" ref_strand="+" ref_description="SGN-E546565 [TUS-69-P23]">
      <seq>aaaaaacatatccaaatccaaaatcaaaataaaatccaaaagcaatgtcaccacgaaatcttatccaatttacctttatcccatattttatttacctatatataccctttataatacctcactttttcaaaaatcacaattgtagataaataaatatcctctatatattacaaatatgaagtttttaccggaattgaggacgtgttgtggcggcgcaaccatcaagacggtgagggatgggctacctcaggtggagaaaaaggagcgggcgctagtaaatcgatcgggaagtaaacgcgtggtttctcggggaaggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42330" stop="43248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42630" g_stop="42948" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E546565" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42630" e_stop="42948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATA-TACAAATATGAAGTTTTTACCGGAATT---GACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATT</genome_strand>
        <mrna_strand>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCACGAAATCTTATCCAATTTACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCAAAAATCACAA-T-TGTAGATAAATAAATATCCTCTATATATTACAAATATGAAGTTTTTACCGGAATTGAGGACGTGTTGTGGCGGCGCAACCATCAAGACGGTGAGGGATGGGCTACCTCAGGTGGAGAAAAAGGAGCGGGCGCTAGTAAATCGATCGGGAAGTAAACGCGTGGTTTCTCGGGGAAGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359438" ref_strand="+" ref_description="SGN-E359438 [cLHT-31-I24]">
      <seq>aaaaacatatccaaatccaaaatcaaaataaaatccaaaagcaatgtcaccacgaaatcttatccaatttacctttatcccatattttatttacctatatataccctttataatacctcactttttcaaaaatcacaattgtagataaataaatatcctctatatattacaaatatgaagtttttaccggaattgaggacgtgttgtggcggcgcaaccatcaagacggtgagggatgggctacctcaggtggagaaaaaggagcgggcgctagtaaatcgatcgggaagtaaacgcgtggtttctcggggaaggaaattgaggaaaatggaggattggaaaccggcgctcaacgtcatctccgaggataacgcgatcgccgacgtcgatcggtacagtttcgatcaaaatacggttggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="42331" stop="43352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42631" g_stop="43052" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E359438" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42631" e_stop="43052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATA-TACAAATATGAAGTTTTTACCGGAATT---GACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATT</genome_strand>
        <mrna_strand>AAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCACGAAATCTTATCCAATTTACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCAAAAATCACAA-T-TGTAGATAAATAAATATCCTCTATATATTACAAATATGAAGTTTTTACCGGAATTGAGGACGTGTTGTGGCGGCGCAACCATCAAGACGGTGAGGGATGGGCTACCTCAGGTGGAGAAAAAGGAGCGGGCGCTAGTAAATCGATCGGGAAGTAAACGCGTGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACGTCGATCGGTACAGTTTCGATCAAAATACGGTTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="73576" stop="72646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73276" g_stop="72946" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73276" e_stop="72946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTATAATCTAAGATTGCAAAATATGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTAAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGAAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAAACATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="72676" stop="73936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72976" g_stop="73636" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72976" e_stop="73636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTTCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTTAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCATATTTTGCAATCTTAGATTATAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCATGCTAAGAGAATGGTTAGTAAAGGGTGCTCAGCTTTCTTTGCACATCTCCGGGATGATACTACCAAGGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTAACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCAATTTCCATACCTCCTTATAGAATGGCTCCAGCAGATTTAAGGGAGTTAAAGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="74497" stop="73219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74197" g_stop="73518" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74197" e_stop="73518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCGCTATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACTTCCACCACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAGTATATCATCGATAAATACCATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATTACTATAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGACGAATGCGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATTCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTAGGCCTTTAACTCCCTTAAATCTGCTGGAGCCATTCTATAAGGAGGTATGGAAATTGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="74568" stop="73284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74268" g_stop="73556" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74268" e_stop="73556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCGCTATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACTTCCACCACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAGTATATCATCGATAAATACCATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATTACTATAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGACGAATGCGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATTCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTAGGCCTTTAACTCCCTTAAATCTGCTG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGC-TCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="74568" stop="73373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74268" g_stop="73673" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74268" e_stop="73673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCGCTATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACTTCCACCACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAGTATATCATCGATAAATACCATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATTACTATAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGACGAATGCGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATTCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="74568" stop="73443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74268" g_stop="73743" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74268" e_stop="73743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCGCTATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACTTCCACCACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAGTATATCATCGATAAATACCATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATTACTATAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="+" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>gtcgagtctttttttttttttttttttaataagaagcaaaatctttattcatatgaactgcaattacattgagtttgaaaaggccatcactaaggtagtcttttcctacatacatatcatttttgcttactactactttatcagaaacaaatacacatttaaatccattcttggtcagaattggaattgaaactaaattatttctcaattctggaacatatgagaccatattcaaagtcactaccttgcctgatgtcatctttaataggactttgccagttccttacacctttgcaacagcggagttggccataaataatttctcatctgtaactgctagagtatatgatgaaaataattctttgttggcacaaacatggcatgaggcaccagaatctatccaccattctcttggatttccaaccaagttacattctgaaagcattgcacagagatcgtccatttctcctttggattcacccaagtttgcttgatccttctttatcttgtccttcttaagaccccggctttcattagccctatgaccatgtttaccacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="76884" stop="85138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83560" g_stop="83587" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.536"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83588" i_stop="84301" i_length="714">
            <donor d_prob="0.696" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84302" g_stop="84838" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="562" r_length="536" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E250407" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83560" e_stop="83587"/>
          <exon e_start="84302" e_stop="84838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAGGCCCTATTTTTACCGTATTAGGTAGGAGAACTTGGACTTTGGCTAGACACTCCCACACTTTGAAATATTTCAAGTTGGATTTTCTACCTTTCCATTTCTCATATGGAAATTACATTTGTCTTTGAATGAGGCACTCTGTTAAGTATTTGATTTGCTGTAAGGATAGCTTTCCCCCACAATTTCTGTGGTAAACCTGAACTTATAAGTAATCCATTCATCATTTCTTTTAAAGTTCGATTTTTCCTTTATGCAATTCCATTAGACTGAGGAGTGTAGGGAGCAGTAGTTTGATGGATTATTCAATTTTCTAAACATATTTATGCAAATGGAGATTCATATTCTTCACCTCTATCAATTTTGATTATTGTGATGTTTTTATCTAACTGATTTTCAACTTCAGTTTTATATTGCCTAAATGCATCTATTGTTTCATCCTTACCATTTAGCAAATAGACATAACAATATCTAGTGCAATCGTCAATAAAAGTTATGAAATACTTTTTCCCACCACGTGATGGTGTTGACTTCATGTCATAAATATCAGTGTGAATCAATTCTAAAGGATTTGAATTCCTTTCAAAAAATTTATAAGGATGCTTAACATACTTATATTCAACGCAAATTTGACATTTTAATTTATTGCACTCAAATTTTGGAAAAATATTCTGTTTTTGCAAGGTTTTGTTATTAACGTGTCCCAAACGTTCATGCCATAAACATTTAGACTCATGCAACTAAGAAGAAGCAAAATCTTTATTCATATCAAATGCAATTCCATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCTTTCTTGCTTACTACTACTTTATTATAAACAAATACACATTTGAATCCATTCTTGGTAAGAACTGAAATTGAAACTTAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTGCATGATGTCATCTTTAATAGGACTTTGTCAGTTCCTTCCACCTTTGCAATAACGGAGTTTTCCATAAACAACTTCTCATCTGTAGGTGTTGGAGTATATGATGAAAATAATTCTTTGTTGGAACAAACATGACATGAGGCACCAGAATCTATTCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCTTCCATTTCTCCTTTGGATTTAGCCAAGTTTGCTTGATCCTTTTTTTTTCTTGTCCTTCTTAGGACCCCGACATTCAGTAGCCCTATGACCATGTTTACCACAATT</genome_strand>
        <mrna_strand>GTC-GAGTCTTTTTTTTT-TTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAGAAGCAAAATCTTTATTCATATGAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATACACATTTAAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTATTTCTCAATTCTGGAACATATGAGACCATATTCAAAGTCACTACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTACACCTTTGCAACAGCGGAGTTGGCCATAAATAATTTCTCATCTGTAACTGCTAGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCACCCAAGTTTGCTTGATCC-TTCTTTATCTTGTCCTTCTTAAGACCCCGGCTTTCATTAGCCCTATGACCATGTTTACCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85311" stop="84002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85011" g_stop="84302" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85011" e_stop="84302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATAAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAATTGTGGTAAACATGGTCATAGGGCTACTGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAAAAAGGATCAAGCAAACTTGGCTAAATCCAAAGGAGAAATGGAAGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGTTATTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCATGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTAAGTTTCAATTTCAGTTCTTACCAAGAATGGATTCAAATGTGTATTTGTTTATAATAAAGTAGTAGTAAGCAAGAAAGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGGAATTGCATTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAG-AAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85162" stop="84002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84862" g_stop="84302" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84862" e_stop="84302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTCAATTGTGGTAAACATGGTCATAGGGCTACTGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAAAAAGGATCAAGCAAACTTGGCTAAATCCAAAGGAGAAATGGAAGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGTTATTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCATGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTAAGTTTCAATTTCAGTTCTTACCAAGAATGGATTCAAATGTGTATTTGTTTATAATAAAGTAGTAGTAAGCAAGAAAGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGGAATTGCATTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAG-AAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="-" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>tcaagagatggcagcaaaagatgtctttctatctgactacattgagtctgcagaggttcattaatgagaacgttcctgttatgtcggatgaaactccgcctgaagaacgattcttggtaacagaagcatggacacattctgattttttgtgtaaaaattatattctgagtggcctgcaggatgatctatacaatgtgtacagtaatgtgaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaggatgccggaatgaagaaatttattgtggcaaagtttctggactataagatgatagacagtaagaccgtcgtcacccaagttcaagaattgcaggtcataatccatgatctccttgctgaaggattggttgtgaatgatgcttttcaagtggctgccattatagagaagttacctccattgtggaaggacttcaaaaactacttgaaacataaacgcaaggagatgactgttgaagatctcatggtaaggctgagaatcgaagaggataacaaggccgcagaaaagaggtcgcgtggtaattcagcaatatcaggagtaaatattgtgaagaagatcccacaaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85884" stop="84601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85584" g_stop="85204" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85134" g_stop="84899" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="616" r_length="235" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E419244" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85584" e_stop="85204"/>
          <exon e_start="85134" e_stop="84899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAGGTATAAATTAATTTAATGCCTATGTTAGAAATATTAAGTTTTTTCTTATACACATAATCTTTAATGTAGGATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTCGTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTATTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATAAAAGAAAAGA</genome_strand>
        <mrna_strand>TCAAGAGATGGCAGCAAAAGATGTCTTTCTATCTGACTACATTGAGTCTGCAGAGGTTCATTAATGAGAACGTTCCTGTTATGTCGGATGAAACTCCGCCTGAAGAACGATTCTTGGTAACAGAAGCATGGACACATTCTGATTTTTTGTGTAAAAATTATATTCTGAGTGGCCTGCAGGATGATCTATACAATGTGTACAGTAATGTGAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAGGATGCCGGAATGAAGAAATTTATTGTGGCAAAGTTTCTGGACTATAAGATGATAGACAGTAAGACCGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG.....................................................................GATTGGTTGTGAATGATGCTTTTCAAGTGGCTGCCATTATAGAGAAGTTACCTCCATTGTGGAAGGACTTCAAAAACTACTTGAAACATAAACGCAAGGAGATGACTGTTGAAGATCTCATGGTAAGGCTGAGAATCGAAGAGGATAACAAGGCCGCAGAAAAGAGGTCGCGTGGTAATTCAGCAATATCAGGAGTAAATATTG-TGAAGAAGATCCCACAAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="85988" stop="84723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85699" g_stop="85204" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85134" g_stop="85023" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85699" e_stop="85204"/>
          <exon e_start="85134" e_stop="85023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAACAGTAAGTGCTGCAATAGTAAGTGTTGCAACAACATCGGTTGCACATAATCGTTCAAATGCTTCCTTAGCACCGTATGAGAAACCTACAAAGTTTTCTGGAGTTGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAGGTATAAATTAATTTAATGCCTATGTTAGAAATATTAAGTTTTTTCTTATACACATAATCTTTAATGTAGGATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTCGTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTATTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG.....................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="86197" stop="84738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85898" g_stop="85204" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85134" g_stop="85038" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85898" e_stop="85204"/>
          <exon e_start="85134" e_stop="85038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCAGTTAACGATTAAAAAAATATAAAAACTTTAACGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCAAATACTTAAATTATCTGTCATTTGTGACAGAAAAAAGAAAAATGACTAATTTAAGTCAAGCAAATGCTGGAACAGTAAGTGCTGCAATAGTAAGTGTTGCAACAACATCGGTTGCACATAATCGTTCAAATGCTTCCTTAGCACCGTATGAGAAACCTACAAAGTTTTCTGGAGTTGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAGGTATAAATTAATTTAATGCCTATGTTAGAAATATTAAGTTTTTTCTTATACACATAATCTTTAATGTAGGATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTC-GTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG---AAA-AAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGC------AA------CAAC-A-AT-GGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG.....................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311061" ref_strand="+" ref_description="SGN-E311061 [cLEZ-17-F20]">
      <seq>aaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="87140" stop="88252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87440" g_stop="87952" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E311061" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87440" e_stop="87952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGGCTTGTTAAAAATGTATTGTATATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</genome_strand>
        <mrna_strand>AAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309030" ref_strand="+" ref_description="SGN-E309030 [cLEZ-1-C23](-)">
      <seq>attataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="87150" stop="88165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87450" g_stop="87865" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E309030" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87450" e_stop="87865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGG</genome_strand>
        <mrna_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309029" ref_strand="+" ref_description="SGN-E309029 [cLEZ-1-C23]">
      <seq>ttataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="87151" stop="88336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87451" g_stop="88046" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E309029" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87451" e_stop="88046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGGCTTGTTAAAAATGTATTGTATATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTATAAGAATTGTTTATGTAATTGTTCTTTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTAATTTGTACTCTAAGACT</genome_strand>
        <mrna_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266076" ref_strand="+" ref_description="SGN-E266076 [cLEI-6-E24]">
      <seq>aatgtcactagtaagacaagtacattagtgaactgaaaacagaacaattacataaacaattcttgtaccattaaatatcacataaataatctttccaaaaggaaagcttcaaatacatatatgatcacacaatacacaatacatttttaacaagcctcgtgctcaaggctttttaggcacttaaggcattttcggctttgacaaagttggcaattcaagcttaggaatgacaggaatctcgagttttggtaaagttggaagttcaacctttgaaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="88317" stop="87439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88017" g_stop="87739" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E266076" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88017" e_stop="87739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAAAAGAACAATTACATAAACAATTCTTATA-CA-TAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATATACAATACATTTTTAACAAGCCTTGTGCTCAAGGCTTTTTAGGCACTTGAGGCATTTCCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGGTG</genome_strand>
        <mrna_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTACCATTAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693332" ref_strand="+" ref_description="SGN-E693332 [LH_Ea01A18](-)">
      <seq>gtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatccctgttcatgttgagacaaagggcgaaaataatttagttactttgcccatagaatatgaaaagaaaaatgctaatgtgccagatccacacccattcatggaattactcctcaatgtaaccaaagatattgagaattaccccatcaagtgatccataaatattatacccaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatcctgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtatcccaaatgcttggatttaagctgtttcaaagtcttgtaatgatatgtgttatgattagcgggtgtgctttgaaatatctgggggcgctaaaaggcgagcgaatatctaatttttntnataactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91965" stop="93911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92265" g_stop="92476" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92477" i_stop="93138" i_length="662">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93139" g_stop="93605" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="682" r_length="469" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E693332" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92265" e_stop="92476"/>
          <exon e_start="93139" e_stop="93605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCC-CACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCAGTTATCTTTTGGAACTTCATCCATGGTAAACCTTTATTTTATTTGATTTCAATATTTATCACAAAATGTTTGGTTCATACATTCTTCAATATATATATAATATCAATATTGTGTCAGAAATATCGTGGATTAATTAGCACATAATTACAAATAAAAAAAATAGAGAAGAAAAATAACACAAGGATTTAACAAGATTCATCTAGGTCTAATCATTCAAGAAAAAACAGAGAGTCTTCCACAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATAGATTCCTTTTCCCAAATCTATTAGGACAACAAATCTCTAAAATTAATAGAGATTATGAGTTTCGTAAAATATATAAGAGAAAAAATTCAAGGCGTGATTAACAAATACTTCCTCTATCTAACAATAGTTGTGGAGTATACGAAAAATAGATGTCTAACAAAACTTGTCCAATTTAGAAAATTAAGAGATTATTTACCTTTGGTTTTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTATTTATTATTTATTGACTCAATCCATTTTTAATCCGTTCAAATTCAAACAAACTCACTCGATCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTTGTTTTACCAATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAG--AA-AAG--AATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGTGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTCATGTGCCAGATCCACACACATTCATGGAATTACTCCTGAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCGAATTCTTTAAAATAATATATTTTGAAGAAATCGATATGAATACGATAACATTTTTGAATAGTTGAAACAATGTATACCAAATGCTTGGATTTAAGCTATTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTAAAAT</genome_strand>
        <mrna_strand>GTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCCCTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGCCCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACCCATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCCCATCAAGTGATCCATAAATATTATACCCAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATCCTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATCCCAAATGCTTGGATTTAAGC---TGTTTCAAAGTCTTGTAATGATATGTGTTATGATTAGCGGGTGTGCTTTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95920" stop="97060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96220" g_stop="96760" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96220" e_stop="96760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCTAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATATAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAACCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAATTCCATTGAAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGAATTGAGCAACGAAATCAACAATGTCACGCTTCATCCTACTCCA-CAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96364" stop="97550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96664" g_stop="97250" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96664" e_stop="97250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96364" stop="97550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96664" g_stop="97250" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96664" e_stop="97250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="96364" stop="97517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96664" g_stop="97217" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96664" e_stop="97217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="99070" stop="97810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98770" g_stop="98110" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98770" e_stop="98110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGATTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCAAATTTTGCATTCTTAAATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCTAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGGCGGTTTCGTTAGTCCGTGAGTTTCTAGATATGTTTCCTGTAGACCTTCCTGGTATGTCACCTGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGTTCTTCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="98170" stop="99100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98470" g_stop="98800" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98470" e_stop="98800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATTTAAGAATGCAAAATTTGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAATCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="100334" stop="99080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100034" g_stop="99380" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100034" e_stop="99380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTCGCTTATCTTAGCGGGTTATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCTGGGAGTACAACATGCAACTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGAAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTCTTCACTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGGTTCTACATAAGATGGGCATAGTGGAACGATTCAGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGTACAGGAACCACCCATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGTGATAGGAAGAGAGATGAGTTCCTGAGCTTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCG-TTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693157" ref_strand="+" ref_description="SGN-E693157 [LH_Ea10J11]">
      <seq>ccttgtgccgaattcggcacgaggtataactttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttatttgaattgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91956" stop="112881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109755" g_stop="109761" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109762" i_stop="110403" i_length="642">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.577" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110404" g_stop="110418" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="23" r_length="16" r_score="0.533"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110419" i_stop="111111" i_length="693">
            <donor d_prob="0.399" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111112" g_stop="111334" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="246" r_length="223" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112030" g_stop="112584" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="797" r_length="551" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E693157" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109755" e_stop="109761"/>
          <exon e_start="110404" e_stop="110418"/>
          <exon e_start="111112" e_stop="111334"/>
          <exon e_start="112030" e_stop="112584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAAGTAAGTTTTTTCGATTATTTTTTATTAGCTTTCTTCCTTTTCTCTCGATTGATGCCGATAATATGTTAAAAAATTAAAATCAGCTGAAAAAATTCTCGATCTATGCCGATAATGTTTTTTGATTTGCTTCATTTACTCACTTTTGGCGTGTGATTTGTCATACATATGATTTCTGAGATATTGTATTTCGTAACTGATTTATTTCTGAGATATTCTGTTTTTTAATTCGTTCTTTGATCTATTCAAATTATATATCTTTAAAATCTATAATAAGTTTATATTCTTTTATAAATAATTTGTGATGAGAAAGAAATATGTGAATGATGGCAAAATATAATTATTTATGGGTGTAAAATATAAATTAATTAACTTTTATTATGTTAACAGCTTTTAAGAGTATTTCAGACATTTTGATTTAAAAAGCTGTTTATCAGCACTTATTTGCCGAACACATCAACAACTTTTTTTTTAACTTCAACACTTTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTATTTTTTTAAAACTGCTTTTATTAAACCCATCCAAACGGGTCCTAACTCATGTTTATTTACTTACAAACTTTAAGAATAACAAAATAATTTGCAACAATTATAGCCATATCCACCAC-AGGTTACTTTGTTATTTCAGGGTGTCGAAAATACTGTATGTATCAATATAAATTAAAACTGTACGTTTATATATAGTATAATTTTTCGACGAAAGGTGTCCAATTCAGGTGACTCAGTCCCTGCTTATAGACCAAAATATGAACATAATTCTGTTGATTTATTAATCTTTACTTAAGGATCCGATATAAAATATGTAAATGGACTTTTTTCATTTAATTGCATAGATTTATCTTTAAAAGAATCAGTTTTTAATTTCTATCTTTTATTAGTTGATTATGTATTTTTGCCCCTATCTCTAATGTGGTCTCCACTTGTTACCCCAAAACAACGAAGCCAGGAGCCGAAGGAGGGACTTGAATCCTCAACCTCTTAAAAAATGAACTTATCCGTACCATGACTTAAGTTCTTTAACAACGCGAGACATGATTTATGAGATATTATGATCATCATAAAATTAAAAATGACCAAACTTATGACTTTGACTTAAAAACACTTTTGGTATTTACTAAATGTATGACAATCTTTAAAAAATGCTCATGAACAAAATAATTGTGTATATACATAGACACGCCTAATTATGTATAGGCAGAAAAAGTAAAAAAATGTATTATAATCTAGAGGTTAGAAATATTGACATTGTCTAACTATAAAAGGGAATAGTATCTCATGTAATGATTGAACCACACACTTTTTATTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTA</genome_strand>
        <mrna_strand>CCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATTCGGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTGAATTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696634" ref_strand="+" ref_description="SGN-E696634 [LH_Ea09K08](-)">
      <seq>actttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacccattcatggaattactcctcaatgtaaccaaagatattgagaattaccccatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaaggtttatagataactaaaaaataaaagttgttattttaaagggactatagtttttctttcttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91960" stop="115609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111117" g_stop="111334" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112606" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="790" r_length="572" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="810"/>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E696634" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111117" e_stop="111334"/>
          <exon e_start="112030" e_stop="112606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTATAGTTTTTTTTTTCTTTTTTTA</genome_strand>
        <mrna_strand>ACTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACCCATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCCCATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAAGGTTTATAGATAACTAAAAAATAAAAGTTGTTATTTTAAAGGGACTATAG-TTTTTCTTTCTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692794" ref_strand="+" ref_description="SGN-E692794 [LH_Ea09K08]">
      <seq>tctttgtgatatatcatatcataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaataaaagttgttatttggattgcactatagtttttctttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91961" stop="112904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111117" g_stop="111334" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112604" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="788" r_length="570" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E692794" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111117" e_stop="111334"/>
          <exon e_start="112030" e_stop="112604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTATAGTTTTTTTTTTCTTTTTT</genome_strand>
        <mrna_strand>TCTTTGTGATATATCATATCATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAATAAAAGTTGTTATTTGGATTGCACTATAG-TTTTTCTTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689492" ref_strand="+" ref_description="SGN-E689492 [LH_Ea01A18]">
      <seq>catgtagatatatcatatcataaaagaaaaatgagcctccccgtaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatacatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaattttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgctattagcgggagtgctttgaaatatcttgaaacaaaaataaaacgagcgaatatctaatttttatacataacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91964" stop="112863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111118" g_stop="111334" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112564" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="748" r_length="531" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E689492" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111118" e_stop="111334"/>
          <exon e_start="112030" e_stop="112564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAG</genome_strand>
        <mrna_strand>CATGTAGATATATCATATCATAAAAGAAAAATGAGCCTCCCCGTAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATACATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGCTATTAGCGGGAGTGCTTTGAAATATCTTGAAACAAAAATAAAACGAGCGAATATCTAATTTTTATACATAACTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690321" ref_strand="+" ref_description="SGN-E690321 [LH_Ea03D07]">
      <seq>tataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaatttttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaaacgagcgaatatctaatttttatagataactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91980" stop="112863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111136" g_stop="111334" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112563" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="730" r_length="531" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E690321" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111136" e_stop="111334"/>
          <exon e_start="112030" e_stop="112563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAA-TTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAA</genome_strand>
        <mrna_strand>TATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGCGAATATCTAATTTTTATAGATAACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694161" ref_strand="+" ref_description="SGN-E694161 [LH_Ea03D07](-)">
      <seq>ataaaagaaaaatgagcctccatggaaagttaatttctgagatagaaattaagtgtgatggagatattttttatgaagtatataggcacaggccacaccatatctccaccatgtcccctaataacatacaaaatgtggatgttcatgaaggtgaatggggcacaattgactctgttatcttttggaacttcatccatgatgggaaagaagtgctggcaagggagaaagtggaagaaatagatgaagaaaagaagctaattaaaaaaaagataattgaaggagatatattggagtattacaaatcattttacatcactgttcatgttgagacaaagggcgaaaataatttagttactttgaccatagaatatgaaaagaaaaatgctaatgtgccagatccacacacattcatggaattactcctcaatgtaaccaaagatattgagaattaccacatcaagtgatacataaatattatacacaaggactctttgaaaatatcgacaagtatatgtcgaatttttttaaaatactgtattttgaagaaatcgatataaatatgataatatttttgaatagttgaaataatgtataccaaatgcttggatttaagctgtttcaaagtcttgtaataatatgtgttgttattagcgggtgtgctttgaaatatcttgtaacaaaaataaagggagcgaatatctaatttttatagataactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="91980" stop="112863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111137" g_stop="111334" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112030" g_stop="112568" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="734" r_length="536" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E694161" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111137" e_stop="111334"/>
          <exon e_start="112030" e_stop="112568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATGGTAAACCTTTATTTTATTTGATTTTATATTTATCACAACATGTTTGGTTCATACATTCTTCAAATATATATATGATATCAATATTGTGTCAGAAATATCGTGGATTAATAAGCACATAATTACAAATAAAAAATATAAAGAAAAAAAATAACACAAGGATTTAACAAAATTCATCTAGGTCTAATTATTCAAGCAAAAACAGAATGTCTTCTGCTATAAAAAAAAAGAGCGTACAAATAAGTAGTCACAATCCTTCAAGGAAAATGTTCTTTCCATTATTCCTATAAGGAAAAAATATATTTCTTTTCCCAAATCTATTAGGATAACAAATCTCTTAAATTAATAGAGATTATGAATTTCATAAAAATATATAAGAGAAAAAAATTCAAGTAATACTCTCTCTATCTAACAATAGTTGTCAAATATATTAAAAAAAGATGTCTAATAAAACTTGTCCAATTTAGAAAATCAAGAGATTATTTACCTTTGGTATTAAATATTATTTATCATCTAACACATTTTTTAAAACAAAAATGTAATAAAGTCAAAGAATAATATAATAATATTATCTCTATTCTTTATTATTTATTGACTCAATCCATTTTTAATCCGTTGATATTCAAACTAACTCACCCGTTCATTTAAAAGTGAAATTAATAGTATGAAATATTTACTATATTTAATTCGTTTTACAGATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAA-TTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGT</genome_strand>
        <mrna_strand>ATAAAAGAAAAATGAGCCTCCATGGAAAGTTAATTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATT-AAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATATGTCGAATTTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCTTGGATTTAAGCTG--TT-TCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAGGGAGCGAATATCTAATTTTTATAGATAACTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309029" ref_strand="+" ref_description="SGN-E309029 [cLEZ-1-C23]">
      <seq>ttataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgtacaagaattgtttatgtaattgttctgttttcagttcactaatgtacttgtcttactagtgacattatacacatctttatttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="124207" stop="123021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123907" g_stop="123312" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E309029" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123907" e_stop="123312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAATCTAAGACT</genome_strand>
        <mrna_strand>TTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266076" ref_strand="+" ref_description="SGN-E266076 [cLEI-6-E24]">
      <seq>aatgtcactagtaagacaagtacattagtgaactgaaaacagaacaattacataaacaattcttgtaccattaaatatcacataaataatctttccaaaaggaaagcttcaaatacatatatgatcacacaatacacaatacatttttaacaagcctcgtgctcaaggctttttaggcacttaaggcattttcggctttgacaaagttggcaattcaagcttaggaatgacaggaatctcgagttttggtaaagttggaagttcaacctttgaaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="+" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="123041" stop="123919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123341" g_stop="123619" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="+" ref_id="SGN-E266076" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123341" e_stop="123619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTAC-A-TAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</genome_strand>
        <mrna_strand>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTACCATTAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311061" ref_strand="+" ref_description="SGN-E311061 [cLEZ-17-F20]">
      <seq>aaaaacatatattataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgaggcttgttaaaaatgtattgtgtattgtgtgatcatatatgtatttgaagctttccttttggaaagattatttatgtgatatttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="124218" stop="123106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123918" g_stop="123406" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E311061" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123918" e_stop="123406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</genome_strand>
        <mrna_strand>AAAAACATATATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309030" ref_strand="+" ref_description="SGN-E309030 [cLEZ-1-C23](-)">
      <seq>attataagtcttgaagaatttatcacctggctttatacaatggcttataagtatattccatcttttttcttgttattattcgtcacattgtttttaacaagtagttatgtgattcaagttgaagcgcgcaatcttcttgaagtaactatccctgagcttcctaagccagaattgccacatttacctgaaatcccaactttgcctaaacttgaattccctgaaattccaaaacctgagttgcctacattaccaaagcccgaatttccagaaattccaaagccggagtttccatcattttcaaaggttgaacttccaactttaccaaaactcgagattcctgtcattcctaagcttgaattgccaactttgtcaaagccgaaaatgccttaagtgcctaaaaagccttgagcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0041J17-hwRZv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0041J17.2" temp_strand="-" temp_description="C05SLm0041J17.2  AC238748.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0041J17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="124208" stop="123193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123908" g_stop="123493" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0041J17.2" gen_strand="-" ref_id="SGN-E309030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0041J17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123908" e_stop="123493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGG</genome_strand>
        <mrna_strand>ATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>64</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6783" PGL_stop="6093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6783" e_stop="6093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="6783" e_stop="6093" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6783" stop="6093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCTACTTCTATAGTAGGATGTTGTGCAGAATGGATTGCTTATGGAGTAATGCTATTTCCCCTATTGAATTTATATGGTTTCCAGCTAAAATTTAACTATTCAATTCTCAAAGCAGATAGTATTTTAGATGCTAGTAAGACATCCTTCTACACTCCATGGAGGGATATGTACCTTGGAGGCTAATCTCAAATGTATTTTGCACCCTTAATGAGCTGTTGTTTGCCACAAGTAATATTACGTTATAGTCTATTGTCACTTGACCTGTAGGTTGTTTTAGTAAAGCTTTTCTGTACGTCATTGGTTGCCTGGTGTGTAATCTATATGTTATGTAGCAAAATAATTGTGCACCTCATATGCTGATTTTCATTTATAAACTTGCTGCCTTCGTTTCAGGTTTTAGTCCTTCTCATTTAGTAAGTGTTCCATCTCTGTCACTTTACGGCAGATCCATGAAGGTGTGTTTACCTTGCTTAAGTTAGCAAGAACTGTTTTTGCAATTCCTTCTAGTGTATGGCTGTGCAGAGCTAGCACACTAAACATGCAATATAAGAAAGAGGAGATACATATTAATTTGATTATCATTCAGAAATTTGCTGTTAGTGTCTCACATGTTAGTGAAGTTGGTGAACTTTATTAAAGAAAATTGAATCTTGCTTAACGTGTGTTTTACATTGCTTATATCCAGT</gDNA_template>
            <first_frame> F  L  L  L  L  *  *  D  V  V  Q  N  G  L  L  M  E  *  C  Y  F  P  Y  *  I  Y  M  V  S  S  *  N  L  T  I  Q  F  S  K  Q  I  V  F  *  M  L  V  R  H  P  S  T  L  H  G  G  I  C  T  L  E  A  N  L  K  C  I  L  H  P  *  *  A  V  V  C  H  K  *  Y  Y  V  I  V  Y  C  H  L  T  C  R  L  F  *  *  S  F  S  V  R  H  W  L  P  G  V  *  S  I  C  Y  V  A  K  *  L  C  T  S  Y  A  D  F  H  L  *  T  C  C  L  R  F  R  F  *  S  F  S  F  S  K  C  S  I  S  V  T  L  R  Q  I  H  E  G  V  F  T  L  L  K  L  A  R  T  V  F  A  I  P  S  S  V  W  L  C  R  A  S  T  L  N  M  Q  Y  K  K  E  E  I  H  I  N  L  I  I  I  Q  K  F  A  V  S  V  S  H  V  S  E  V  G  E  L  Y  *  R  K  L  N  L  A  *  R  V  F  Y  I  A  Y  I  Q  </first_frame>
            <second_frame>  F  F  Y  F  Y  S  R  M  L  C  R  M  D  C  L  W  S  N  A  I  S  P  I  E  F  I  W  F  P  A  K  I  *  L  F  N  S  Q  S  R  *  Y  F  R  C  *  *  D  I  L  L  H  S  M  E  G  Y  V  P  W  R  L  I  S  N  V  F  C  T  L  N  E  L  L  F  A  T  S  N  I  T  L  *  S  I  V  T  *  P  V  G  C  F  S  K  A  F  L  Y  V  I  G  C  L  V  C  N  L  Y  V  M  *  Q  N  N  C  A  P  H  M  L  I  F  I  Y  K  L  A  A  F  V  S  G  F  S  P  S  H  L  V  S  V  P  S  L  S  L  Y  G  R  S  M  K  V  C  L  P  C  L  S  *  Q  E  L  F  L  Q  F  L  L  V  Y  G  C  A  E  L  A  H  *  T  C  N  I  R  K  R  R  Y  I  L  I  *  L  S  F  R  N  L  L  L  V  S  H  M  L  V  K  L  V  N  F  I  K  E  N  *  I  L  L  N  V  C  F  T  L  L  I  S  S </second_frame>
            <third_frame>   S  S  T  S  I  V  G  C  C  A  E  W  I  A  Y  G  V  M  L  F  P  L  L  N  L  Y  G  F  Q  L  K  F  N  Y  S  I  L  K  A  D  S  I  L  D  A  S  K  T  S  F  Y  T  P  W  R  D  M  Y  L  G  G  *  S  Q  M  Y  F  A  P  L  M  S  C  C  L  P  Q  V  I  L  R  Y  S  L  L  S  L  D  L  *  V  V  L  V  K  L  F  C  T  S  L  V  A  W  C  V  I  Y  M  L  C  S  K  I  I  V  H  L  I  C  *  F  S  F  I  N  L  L  P  S  F  Q  V  L  V  L  L  I  *  *  V  F  H  L  C  H  F  T  A  D  P  *  R  C  V  Y  L  A  *  V  S  K  N  C  F  C  N  S  F  *  C  M  A  V  Q  S  *  H  T  K  H  A  I  *  E  R  G  D  T  Y  *  F  D  Y  H  S  E  I  C  C  *  C  L  T  C  *  *  S  W  *  T  L  L  K  K  I  E  S  C  L  T  C  V  L  H  C  L  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6378" stop="6142"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSFSKCSISVTLRQIHEGVFTLLKLARTVFAIPSSVWLCRASTLNMQYKKEEIHINLIIIQKFAVSVSHVSEVGELY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8137" PGL_stop="9276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8137" e_stop="8453"/>
            <exon e_start="9093" e_stop="9276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="8137" e_stop="8453" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8454" i_stop="9092" i_length="639"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="9093" e_stop="9276" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8453"/>
              <exon start="9093" stop="9275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305474" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8453"/>
              <exon start="9093" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8453"/>
              <exon start="9093" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543996" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACTACTACGTATATGTGAATATTTTACTTAACAAAGATGCATCAGATCTTCATATTGTTACACATCTTGTAAATGTGACATGCTTACTTGAAGTTAACAACTTAGGTATATCAGGAGCTGTGATACATTATTCAGCAACACATTTATAAATTTTACTAAAACATGAAATTAAGTAATTGTTTATCCGGAAAAGCTTGAAAAGGAAAATTGAACAAATTGGACATCACAGCTTGACTATGTTTTATGTTTACTTGGTAAGTTGAAAAGAAAAAAATTGTCACTTGGAAAGTATTATATTGGCTTAGAAATGTCAT : GTTTTTTTCCCAGACATATGATTGACTAACCTCCTTATGTTACACAAATCTGATCAAGTACCATATTTTGTACTCTGATGATATTAATATCTTTTGAAGGCAAAGTTGGGACTTTTCCTGATGTGACACAAGCTCCAACAATCCTCAGGAACTATCGGAGGGGGAGAGTCTCAAGGGCTAAATC</gDNA_template>
            <first_frame> D  T  T  T  Y  M  *  I  F  Y  L  T  K  M  H  Q  I  F  I  L  L  H  I  L  *  M  *  H  A  Y  L  K  L  T  T  *  V  Y  Q  E  L  *  Y  I  I  Q  Q  H  I  Y  K  F  Y  *  N  M  K  L  S  N  C  L  S  G  K  A  *  K  G  K  L  N  K  L  D  I  T  A  *  L  C  F  M  F  T  W  *  V  E  K  K  K  I  V  T  W  K  V  L  Y  W  L  R  N  V  M :   F  F  S  Q  T  Y  D  *  L  T  S  L  C  Y  T  N  L  I  K  Y  H  I  L  Y  S  D  D  I  N  I  F  *  R  Q  S  W  D  F  S  *  C  D  T  S  S  N  N  P  Q  E  L  S  E  G  E  S  L  K  G  *  I </first_frame>
            <second_frame>  I  L  L  R  I  C  E  Y  F  T  *  Q  R  C  I  R  S  S  Y  C  Y  T  S  C  K  C  D  M  L  T  *  S  *  Q  L  R  Y  I  R  S  C  D  T  L  F  S  N  T  F  I  N  F  T  K  T  *  N  *  V  I  V  Y  P  E  K  L  E  K  E  N  *  T  N  W  T  S  Q  L  D  Y  V  L  C  L  L  G  K  L  K  R  K  K  L  S  L  G  K  Y  Y  I  G  L  E  M  S   : C  F  F  P  R  H  M  I  D  *  P  P  Y  V  T  Q  I  *  S  S  T  I  F  C  T  L  M  I  L  I  S  F  E  G  K  V  G  T  F  P  D  V  T  Q  A  P  T  I  L  R  N  Y  R  R  G  R  V  S  R  A  K   </second_frame>
            <third_frame>   Y  Y  Y  V  Y  V  N  I  L  L  N  K  D  A  S  D  L  H  I  V  T  H  L  V  N  V  T  C  L  L  E  V  N  N  L  G  I  S  G  A  V  I  H  Y  S  A  T  H  L  *  I  L  L  K  H  E  I  K  *  L  F  I  R  K  S  L  K  R  K  I  E  Q  I  G  H  H  S  L  T  M  F  Y  V  Y  L  V  S  *  K  E  K  N  C  H  L  E  S  I  I  L  A  *  K  C  H  :  V  F  F  P  D  I  *  L  T  N  L  L  M  L  H  K  S  D  Q  V  P  Y  F  V  L  *  *  Y  *  Y  L  L  K  A  K  L  G  L  F  L  M  *  H  K  L  Q  Q  S  S  G  T  I  G  G  G  E  S  Q  G  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11243" PGL_stop="10747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11243" e_stop="10747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="11243" e_stop="10747" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11243" stop="10747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAACGTGGATCAATATATGATATTTCTATTATAAAGGTTAGGCAATATATGATCTTCCTGAGTTTGTTAGGATGGATTACTTGATTGTCTGATGTTTTGTGTTAGTTGTTGAATTATGTACCGACATCCCTTTTACACCCATGATTCACTCACCATGGACGCGCTAGCTTTTACAATTGAATCTTGGGAATAATGTAAGTATATACACTTAATAGCACTAGAGCTTACTTGTTTTTTCATGGAGCGAAATTATGGACAAAACATGTGCTCCCAAAGACATGAGGTGGAAGTGAGAACAAAGGTGATTTGAGTAAACAAAAAGGAGTAAGGTAATGACTACTGTTCTTTGTGTGTTCTATTGCCTCAAGATTTGTGCATGTATTTGGTGATCTATGTTGATGATATGCTCATCATATATAATGATGAAAAGAAAAAGTACCAACTTGAAGAATAACCATTTCAGACCAAGAACCTAGATGTATTGATATACTTCTT</gDNA_template>
            <first_frame> D  N  V  D  Q  Y  M  I  F  L  L  *  R  L  G  N  I  *  S  S  *  V  C  *  D  G  L  L  D  C  L  M  F  C  V  S  C  *  I  M  Y  R  H  P  F  Y  T  H  D  S  L  T  M  D  A  L  A  F  T  I  E  S  W  E  *  C  K  Y  I  H  L  I  A  L  E  L  T  C  F  F  M  E  R  N  Y  G  Q  N  M  C  S  Q  R  H  E  V  E  V  R  T  K  V  I  *  V  N  K  K  E  *  G  N  D  Y  C  S  L  C  V  L  L  P  Q  D  L  C  M  Y  L  V  I  Y  V  D  D  M  L  I  I  Y  N  D  E  K  K  K  Y  Q  L  E  E  *  P  F  Q  T  K  N  L  D  V  L  I  Y  F   </first_frame>
            <second_frame>  I  T  W  I  N  I  *  Y  F  Y  Y  K  G  *  A  I  Y  D  L  P  E  F  V  R  M  D  Y  L  I  V  *  C  F  V  L  V  V  E  L  C  T  D  I  P  F  T  P  M  I  H  S  P  W  T  R  *  L  L  Q  L  N  L  G  N  N  V  S  I  Y  T  *  *  H  *  S  L  L  V  F  S  W  S  E  I  M  D  K  T  C  A  P  K  D  M  R  W  K  *  E  Q  R  *  F  E  *  T  K  R  S  K  V  M  T  T  V  L  C  V  F  Y  C  L  K  I  C  A  C  I  W  *  S  M  L  M  I  C  S  S  Y  I  M  M  K  R  K  S  T  N  L  K  N  N  H  F  R  P  R  T  *  M  Y  *  Y  T  S  </second_frame>
            <third_frame>   *  R  G  S  I  Y  D  I  S  I  I  K  V  R  Q  Y  M  I  F  L  S  L  L  G  W  I  T  *  L  S  D  V  L  C  *  L  L  N  Y  V  P  T  S  L  L  H  P  *  F  T  H  H  G  R  A  S  F  Y  N  *  I  L  G  I  M  *  V  Y  T  L  N  S  T  R  A  Y  L  F  F  H  G  A  K  L  W  T  K  H  V  L  P  K  T  *  G  G  S  E  N  K  G  D  L  S  K  Q  K  G  V  R  *  *  L  L  F  F  V  C  S  I  A  S  R  F  V  H  V  F  G  D  L  C  *  *  Y  A  H  H  I  *  *  *  K  E  K  V  P  T  *  R  I  T  I  S  D  Q  E  P  R  C  I  D  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21194" PGL_stop="20700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21194" e_stop="20700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="21194" e_stop="20700" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21194" stop="20700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCCAGAGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTTTTTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTTTGGTGATTCATGCCATGTTTGTGCCAACAAAGAATTACTTTCATTATATACTCCAGCACCTAAAGATGAGAAGTTGTTTATGGCGAACTCCGTTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGC</gDNA_template>
            <first_frame> M  P  E  S  *  E  G  Q  E  K  E  G  S  R  K  L  G  *  I  Q  R  R  N  G  R  S  F  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  N  R  F  W  *  F  M  P  C  L  C  Q  Q  R  I  T  F  I  I  Y  S  S  T  *  R  *  E  V  V  Y  G  E  L  R  C  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  N  S  D  Q  E  W  I  H  M  C  I  C  F  *  *  S  S  S  K  Q  E  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C </first_frame>
            <second_frame>  C  Q  S  P  K  K  D  K  K  K  K  D  Q  E  N  L  A  E  S  K  G  E  M  D  D  L  F  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  *  I  D  F  G  D  S  C  H  V  C  A  N  K  E  L  L  S  L  Y  T  P  A  P  K  D  E  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  I  L  T  K  N  G  F  I  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  N  M  N  K  D  F   </second_frame>
            <third_frame>   A  R  V  L  R  R  T  R  K  R  R  I  K  K  T  W  L  N  P  K  E  K  W  T  I  F  L  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  E  *  I  L  V  I  H  A  M  F  V  P  T  K  N  Y  F  H  Y  I  L  Q  H  L  K  M  R  S  C  L  W  R  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  S  Y  V  Y  L  F  L  I  K  *  *  *  A  R  M  I  C  M  *  E  K  V  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21064" stop="20702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDFGDSCHVCANKELLSLYTPAPKDEKLFMANSVVAKVEGTDKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPILTKNGFICVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVNMNKDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28026" PGL_stop="28202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28026" e_stop="28202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="28026" e_stop="28202" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  S  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  *  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  I  V  P  Q  M  G  P  Y  Q  C  L  S  D  S  Y  C  C  R  R  T  L  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  *  C  L  K  W  G  H  I  N  A  *  V  I  A  I  V  V  G  E  L  C  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29507" PGL_stop="31263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29507" e_stop="31263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="29507" e_stop="31263" e_length="1757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="30218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="30101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="30031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29577" stop="30256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29577" stop="29935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30026" stop="30684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30095" stop="30856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30095" stop="30755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30322" stop="30864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30705" stop="31263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCTAAATATGGCTTAAAAATACTGTTCATCAAGCTCATCAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATAATAACAGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGGAATGCACTTGGTCTACTGAAGCCTTTGCTCAACAACTCTTGAAGTTGGTCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCAACTCAATCGAGGGTACGTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAATACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGAGGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCTGATCTCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTACTCCAGAATAACGGCCTCTACCATGACTACCTCTACCTCTAACGTTTAGAGGTCTATAACTCTATTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACAATTAAAATCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  Y  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  L  F  I  K  L  I  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  Q  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  N  A  L  G  L  L  K  P  L  L  N  N  S  *  S  W  S  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  N  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Y  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  T  G  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  T  P  E  *  R  P  L  P  *  L  P  L  P  L  T  F  R  G  L  *  L  Y  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  Q  L  K  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  R  R  G  L  N  M  A  *  K  Y  C  S  S  S  S  S  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  L  L  P  V  F  S  I  D  N  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  G  M  H  L  V  Y  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  L  I  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  R  V  R  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  R  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  L  I  S  Q  G  K  R  S  N  G  P  S  H  P  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  V  A  H  H  L  G  R  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  Y  L  Y  L  *  R  L  E  V  Y  N  S  I  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  R  N  L  V  L  *  S  K  N  N  *  N  H  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  *  I  W  L  K  N  T  V  H  Q  A  H  Q  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  C  C  P  Y  F  Q  L  I  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  E  C  T  W  S  T  E  A  F  A  Q  Q  L  L  K  L  V  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  *  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  Q  L  N  R  G  Y  V  G  S  V  I  L  E  M  C  Q  E  S  *  I  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  T  S  K  *  G  G  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  *  S  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  T  M  L  *  C  S  G  Y  R  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  Y  S  R  I  T  A  S  T  M  T  T  S  T  S  N  V  *  R  S  I  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30233" stop="30478"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPDSRSIQKSISLSGGIPGRSAGNTSRNSRTTETNSIEGTWVVSSLRCAKKAKYPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29702" stop="29899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKILFIKLINAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29507" stop="29701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLDKSAVVASYPTKLLISDTLVGLTQFFTVSILEGSTITPSLETTCPKKDTASSQNSHLENLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29815" stop="30009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLKNTVHQAHQRSRGIRKTKRHHYKFVMPIPRSKSSLWHICCPYFQLIITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="31522" PGL_stop="30078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31522" e_stop="31336"/>
            <exon e_start="30591" e_stop="30078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="31522" e_stop="31336" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31335" i_stop="30592" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="30591" e_stop="30078" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31522" stop="31336"/>
              <exon start="30591" stop="30078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCACCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTATTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCACGTACCCTCGATTGAGTTGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGACCAACTTCAAGAGTTGTTGAGCAAAGGCTTCAGTAGACCAAGTGCATTCCCTTGGGGTGCTCCGGTGTTATTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  T  F  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  R  T  L  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  R  P  T  S  R  V  V  E  Q  R  L  Q  *  T  K  C  I  P  L  G  C  S  G  V  I  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  P  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  Y  L  A  F  L  A  H  L  K  D  D  T  T  H  V  P  S  I  E  L  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  D  Q  L  Q  E  L  L  S  K  G  F  S  R  P  S  A  F  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  H  L  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  I  *  L  S  W  H  I  S  R  M  T  L  P  T  Y  P  R  L  S  W  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  Q  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  T  N  F  K  S  C  *  A  K  A  S  V  D  Q  V  H  S  L  G  V  L  R  C  Y  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31521" stop="31336"/>
                    <exon start="30591" stop="30079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISPLQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGYLAFLAHLKDDTTHVPSIELVSVVREFLDVFPADLPGMPPDRDIDFCIDLESGTRPISIPPYRMAPAELRELKDQLQELLSKGFSRPSAFPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31426" PGL_stop="32214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31426" e_stop="32214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="31426" e_stop="32214" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31426" stop="32143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31429" stop="32090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31782" stop="32214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGATATACTTCTCCAAAAACAAACTAGAGAATGAGGCCCAAGCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGACGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACTTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  I  Y  F  S  K  N  K  L  E  N  E  A  Q  A  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  *  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  I  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  Y  T  S  P  K  T  N  *  R  M  R  P  K  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  D  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  L  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  I  V  G  W  H  T  G  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  D  I  L  L  Q  K  Q  T  R  E  *  G  P  S  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  T  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  L  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31991" stop="32212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTEIGENLIDHLWGRLGWQSLILHLFIFPILPFSYYLLSRWRSHCPSIRWTRCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32016" stop="32213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="32147" PGL_stop="31595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32147" e_stop="31595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="32147" e_stop="31595" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32147" stop="31595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCAAGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGTCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGCTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  I  *  S  R  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  Q  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  A  W  A  S  F  </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  K  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  V  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  L  G  P  H  S </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  Y  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  S  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  S  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  C  L  G  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32146" stop="31595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGKFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNVKMWWRSHIECQPTEAPPMLGPHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="32512" PGL_stop="32221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32512" e_stop="32221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="32512" e_stop="32221" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32512" stop="32221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  Q  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  E  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  G  R  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32463" stop="32221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRQDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="33157" PGL_stop="32921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33157" e_stop="32921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="33157" e_stop="32921" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33157" stop="32921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCAAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTATCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  K  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  I  R  V  L  Y  *  P  L  L  L  L  F  S  S  L  L  F  V </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  S  V  F  C  T  D  P  Y  F  Y  C  F  L  L  C  Y  L   </second_frame>
            <third_frame>   M  N  Q  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  F  V  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="33013" PGL_stop="33642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33013" e_stop="33233"/>
            <exon e_start="33346" e_stop="33642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="33013" e_stop="33233" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33234" i_stop="33345" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="33346" e_stop="33642" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33013" stop="33233"/>
              <exon start="33346" stop="33642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTTGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCA : ATATACTATCTTGGTGTCGAAACGTGACACCCAATCCATATTCTTTCCTGATACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATACTGGTACCGAAACGTGGCACTCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAATAGATTAGG</gDNA_template>
            <first_frame> S  I  Y  *  A  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  W  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  P  R  V  G  T  *  H  S  A  P  Q :   Y  T  I  L  V  S  K  R  D  T  Q  S  I  F  F  P  D  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  T  P  D  P  Y  S  I  L  V  P  K  R  G  T  R  S  I  Y  Y  P  G  V  G  T  *  H  S  D  P  H  I  L  S  W  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  N  R  L   </first_frame>
            <second_frame>  V  Y  I  K  Q  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  V  T  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  R  L  L  I  I  L  I  W  E  F  G  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  P  L  V  S  V  R  D  T  P  L  L   : N  I  L  S  W  C  R  N  V  T  P  N  P  Y  S  F  L  I  P  E  R  G  T  R  S  I  F  Y  P  G  V  G  T  *  H  P  I  H  I  L  Y  W  Y  R  N  V  A  L  D  P  Y  T  I  L  V  S  E  R  D  T  P  I  L  I  Y  Y  P  G  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  I  D  *  </second_frame>
            <third_frame>   Y  I  L  S  N  I  I  K  S  T  N  I  L  S  M  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  T  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  L  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  P  S  C  R  Y  V  T  L  R  S  S  :  I  Y  Y  L  G  V  E  T  *  H  P  I  H  I  L  S  *  Y  R  N  V  A  P  D  P  Y  S  I  L  V  S  E  R  D  T  R  S  I  F  Y  T  G  T  E  T  W  H  S  I  H  I  L  S  W  C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33397" stop="33636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRNVAPDPYSILVSERDTRSIFYTGTETWHSIHILSWCRNVTLRSSYTILVPERGTRSPNLTTFVHQAFFYTKASSLTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="33903" PGL_stop="34373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33903" e_stop="34373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="33903" e_stop="34373" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33903" stop="34373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATTCCCTTCTCTTTCTTTCTGTTCTTTTCTTTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAACATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCGAGACTGGGATTTCGCAGTCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCCCGTCAAAGAGTTCAGAGACTCAATTTCTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGATCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGCGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGTCCATGA</gDNA_template>
            <first_frame> S  I  P  F  S  F  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  H  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  F  D  R  D  W  D  F  A  V  C  D  G  P  S  R  L  R  R  S  V  L  L  P  V  K  E  F  R  D  S  I  S  L  K  S  L  *  R  S  V  T  P  V  T  I  R  P  A  I  P  S  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  R  F  E  T  R  P  C  D  G  P  S  C  P  * </first_frame>
            <second_frame>  R  F  P  S  L  S  F  C  S  F  L  F  L  I  P  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  N  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  S  T  E  T  G  I  S  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  C  P  S  K  S  S  E  T  Q  F  L  *  R  V  C  D  G  P  S  H  L  *  R  S  V  L  P  F  R  H  E  V  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  D  P  A  T  V  R  R  V  H   </second_frame>
            <third_frame>   D  S  L  L  F  L  S  V  L  F  F  F  L  F  Q  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  T  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  F  R  S  L  *  R  P  V  A  P  A  T  V  R  P  A  A  R  Q  R  V  Q  R  L  N  F  S  E  E  S  V  T  V  R  H  T  C  D  D  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  A  F  *  N  E  T  L  R  R  S  V  V  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="42630" PGL_stop="43425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42630" e_stop="43425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="42630" e_stop="43425" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42630" stop="43425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42630" stop="42969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42630" stop="42948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42631" stop="43052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACATATCCAAATCCAAAATCAAAATAAAATCCAAAAGCAATGTCACCATGAATTCTTATCCAATTCACCTTTATCCCATATTTTATTTACCTATATATACCCTTTATAATACCTCACTTTTTCGAAAATCACAACTGTATAGATAAATAAATATCCTTTATATATACAAATATGAAGTTTTTACCGGAATTGACGTGTTGTGGCGGCGAAACCATCAAGACGGCGAGGGATGGGCTACCTCCGGTGGAGAAAAAGGAGTCGGCGCTAGTAAATCGATCGGGAAGTAAACGCGCGGTTTCTCGGGGAAGGAAATTGAGGAAAATGGAGGATTGGAAACCGGCGCTCAACGTCATCTCCGAGGATAACGCGATCGCCGACATCGATCGGTACAGTTACGATCAAAATACGGTTGGAAATTCCGGGAATGAAAGAGCCGGGAAATCTGGTAGAGCACAGAAGAAGTTCGGCGACGGTTACTGGTAACTAATTTCTCTTTTTTCTTTTTCTTTTTCTTTTCACTGTTTCATGACTTTTTTTTTAACCAAACTATTGCTCACATGATATTTTCCAATGTTTTGGGCCAAATTATTAGTTTTACTATCGATATTTCTAGACTAAATTATTAATCGGAGAATTTTTATTTAATCTGTAATTCAAAAATTATTTTTATTCCTTTTTAGTTGTTTTTATTATTATTTTACTTTGGAGAGGATAATTTATTTTTTTTTGGTATATATGCAGGAAAATGTCGTACGCCGTTGCGATGCCTGCTTTCTCAGGAATGCATTTTT</gDNA_template>
            <first_frame> K  K  H  I  Q  I  Q  N  Q  N  K  I  Q  K  Q  C  H  H  E  F  L  S  N  S  P  L  S  H  I  L  F  T  Y  I  Y  P  L  *  Y  L  T  F  S  K  I  T  T  V  *  I  N  K  Y  P  L  Y  I  Q  I  *  S  F  Y  R  N  *  R  V  V  A  A  K  P  S  R  R  R  G  M  G  Y  L  R  W  R  K  R  S  R  R  *  *  I  D  R  E  V  N  A  R  F  L  G  E  G  N  *  G  K  W  R  I  G  N  R  R  S  T  S  S  P  R  I  T  R  S  P  T  S  I  G  T  V  T  I  K  I  R  L  E  I  P  G  M  K  E  P  G  N  L  V  E  H  R  R  S  S  A  T  V  T  G  N  *  F  L  F  F  L  F  L  F  L  F  T  V  S  *  L  F  F  *  P  N  Y  C  S  H  D  I  F  Q  C  F  G  P  N  Y  *  F  Y  Y  R  Y  F  *  T  K  L  L  I  G  E  F  L  F  N  L  *  F  K  N  Y  F  Y  S  F  L  V  V  F  I  I  I  L  L  W  R  G  *  F  I  F  F  W  Y  I  C  R  K  M  S  Y  A  V  A  M  P  A  F  S  G  M  H  F  </first_frame>
            <second_frame>  K  N  I  S  K  S  K  I  K  I  K  S  K  S  N  V  T  M  N  S  Y  P  I  H  L  Y  P  I  F  Y  L  P  I  Y  T  L  Y  N  T  S  L  F  R  K  S  Q  L  Y  R  *  I  N  I  L  Y  I  Y  K  Y  E  V  F  T  G  I  D  V  L  W  R  R  N  H  Q  D  G  E  G  W  A  T  S  G  G  E  K  G  V  G  A  S  K  S  I  G  K  *  T  R  G  F  S  G  K  E  I  E  E  N  G  G  L  E  T  G  A  Q  R  H  L  R  G  *  R  D  R  R  H  R  S  V  Q  L  R  S  K  Y  G  W  K  F  R  E  *  K  S  R  E  I  W  *  S  T  E  E  V  R  R  R  L  L  V  T  N  F  S  F  F  F  F  F  F  F  S  L  F  H  D  F  F  F  N  Q  T  I  A  H  M  I  F  S  N  V  L  G  Q  I  I  S  F  T  I  D  I  S  R  L  N  Y  *  S  E  N  F  Y  L  I  C  N  S  K  I  I  F  I  P  F  *  L  F  L  L  L  F  Y  F  G  E  D  N  L  F  F  F  G  I  Y  A  G  K  C  R  T  P  L  R  C  L  L  S  Q  E  C  I  F </second_frame>
            <third_frame>   K  T  Y  P  N  P  K  S  K  *  N  P  K  A  M  S  P  *  I  L  I  Q  F  T  F  I  P  Y  F  I  Y  L  Y  I  P  F  I  I  P  H  F  F  E  N  H  N  C  I  D  K  *  I  S  F  I  Y  T  N  M  K  F  L  P  E  L  T  C  C  G  G  E  T  I  K  T  A  R  D  G  L  P  P  V  E  K  K  E  S  A  L  V  N  R  S  G  S  K  R  A  V  S  R  G  R  K  L  R  K  M  E  D  W  K  P  A  L  N  V  I  S  E  D  N  A  I  A  D  I  D  R  Y  S  Y  D  Q  N  T  V  G  N  S  G  N  E  R  A  G  K  S  G  R  A  Q  K  K  F  G  D  G  Y  W  *  L  I  S  L  F  S  F  S  F  S  F  H  C  F  M  T  F  F  L  T  K  L  L  L  T  *  Y  F  P  M  F  W  A  K  L  L  V  L  L  S  I  F  L  D  *  I  I  N  R  R  I  F  I  *  S  V  I  Q  K  L  F  L  F  L  F  S  C  F  Y  Y  Y  F  T  L  E  R  I  I  Y  F  F  L  V  Y  M  Q  E  N  V  V  R  R  C  D  A  C  F  L  R  N  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42785" stop="43117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFIYTNMKFLPELTCCGGETIKTARDGLPPVEKKESALVNRSGSKRAVSRGRKLRKMEDWKPALNVISEDNAIADIDRYSYDQNTVGNSGNERAGKSGRAQKKFGDGYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73276" PGL_stop="72946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73276" e_stop="72946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="73276" e_stop="72946" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73276" stop="72946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTATAATCTAAGATTGCAAAATATGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAAGACCTATATACCTTTTAAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGGCCAGTAGAAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAAACATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  M  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  G  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  K  T  Y  I  P  F  K  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  N  *  G  Q  *  K  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  T  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  I  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  L  L  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  I  *  I  K  A  S  R  K  C  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  K  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  K  Y  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  R  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  *  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  F  K  L  R  P  V  E  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  N  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="72976" PGL_stop="73636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72976" e_stop="73636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="72976" e_stop="73636" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72976" stop="73636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTTCTACTGGCCTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTTAAAAGGTATATAGGTCTTGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCATATTTTGCAATCTTAGATTATAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCATGCTAAGAGAATGGTTAGTAAAGGGTGCTCAGCTTTCTTTGCACATCTCCGGGATGATACTACCAAGGTACCTTCAATTGAGTCGGTTCCGGTAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTAACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCAATTTCCATACCTCCTTATAGAATGGCTCCAGCAGATTTAAGGGAGTTAAAGGCCTAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  A  F  S  T  G  L  N  L  N  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  *  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Y  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  H  A  K  R  M  V  S  K  G  C  S  A  F  F  A  H  L  R  D  D  T  T  K  V  P  S  I  E  S  V  P  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  N  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  D  L  R  E  L  K  A  *  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  T  L  A  P  H  F  H  M  Y  L  P  H  F  L  L  A  L  I  *  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  F  K  R  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  H  I  L  Q  S  *  I  I  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  M  L  R  E  W  L  V  K  G  A  Q  L  S  L  H  I  S  G  M  I  L  P  R  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  S  R  V  L  A  Q  F  P  Y  L  L  I  E  W  L  Q  Q  I  *  G  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  P  W  L  H  I  F  I  C  I  F  R  I  F  Y  W  P  *  F  K  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  L  K  G  I  *  V  L  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  P  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  I  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  L  S  F  L  C  T  S  P  G  *  Y  Y  Q  G  T  F  N  *  V  G  S  G  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  A  G  Y  S  P  N  F  H  T  S  L  *  N  G  S  S  R  F  K  G  V  K  G  L  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73102" stop="73584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPYFAILDYNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLHAKRMVSKGCSAFFAHLRDDTTKVPSIESVPVVREFLDVFPADLPGMPPDRDINFCIDLEPGTRPISIPPYRMAPADLRELKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="74268" PGL_stop="73518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74268" e_stop="73518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="74268" e_stop="73518" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74268" stop="73556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74268" stop="73673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74268" stop="73743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74197" stop="73518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTGGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTTCTCACTGTTTCAATCTTAGAAGGATCCGCTATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTTAACACTTCCACCACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTAGAGTATATCAGTATATCATCGATAAATACCATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATTACTATAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGACGAATGCGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATTCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTAGGCCTTTAACTCCCTTAAATCTGCTGGAGCCATTCTATAAGGAGGTATGGAAATTGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  G  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  S  H  C  F  N  L  R  R  I  R  Y  H  S  I  L  R  N  H  V  P  Q  K  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  P  F  L  P  *  H  F  H  H  N  S  Q  M  L  L  M  F  L  L  T  L  R  V  Y  Q  Y  I  I  D  K  Y  H  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  H  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  S  A  T  N  A  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  S  H  P  K  T  P  I  L  L  L  H  K  *  H  W  S  T  P  R  G  C  T  W  S  N  E  T  F  T  *  Q  L  L  K  L  G  L  *  L  P  *  I  C  W  S  H  S  I  R  R  Y  G  N  W  A  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  L  T  V  S  I  L  E  G  S  A  I  T  P  S  L  E  T  T  C  P  K  K  D  T  E  S  S  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  T  S  T  T  I  L  K  C  S  S  C  S  F  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  I  R  P  K  D  I  T  I  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  R  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  V  R  R  M  R  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  *  A  F  N  S  L  K  S  A  G  A  I  L  *  G  G  M  E  I  G  R  V </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  W  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  F  S  L  F  Q  S  *  K  D  P  L  S  L  H  P  *  K  P  R  A  P  K  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  L  T  L  P  P  Q  F  S  N  A  P  H  V  P  S  Y  S  *  S  I  S  V  Y  H  R  *  I  P  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  *  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  G  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  D  E  C  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  F  T  S  E  N  S  H  P  S  S  S  Q  I  T  L  E  H  P  K  G  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  R  P  L  T  P  L  N  L  L  E  P  F  Y  K  E  V  W  K  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74055" stop="73765"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFHHNSQMLLMFLLTLRVYQYIIDKYHHKEIQIWLKNPVHQAHESSRGIHKTKRHYYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="83560" PGL_stop="84838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83560" e_stop="83587"/>
            <exon e_start="84302" e_stop="84838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.696" acc_prob="0.000" e_score="0.536"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.536">
            <gDNA_exon_boundary e_start="83560" e_stop="83587" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.696" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83588" i_stop="84301" i_length="714"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="84302" e_stop="84838" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83560" stop="83587"/>
              <exon start="84302" stop="84838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTAGGCCCTATTTTTACCGTATTAG : TAAGAAGAAGCAAAATCTTTATTCATATCAAATGCAATTCCATTGAGTTTGAAAAGGCCATCACTAAGGTAGCCTTTTCCTACATACATATCTTTCTTGCTTACTACTACTTTATTATAAACAAATACACATTTGAATCCATTCTTGGTAAGAACTGAAATTGAAACTTAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTGCATGATGTCATCTTTAATAGGACTTTGTCAGTTCCTTCCACCTTTGCAATAACGGAGTTTTCCATAAACAACTTCTCATCTGTAGGTGTTGGAGTATATGATGAAAATAATTCTTTGTTGGAACAAACATGACATGAGGCACCAGAATCTATTCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCTTCCATTTCTCCTTTGGATTTAGCCAAGTTTGCTTGATCCTTTTTTTTTCTTGTCCTTCTTAGGACCCCGACATTCAGTAGCCCTATGACCATGTTTACCACAATT</gDNA_template>
            <first_frame> V  L  G  P  I  F  T  V  L   : V  R  R  S  K  I  F  I  H  I  K  C  N  S  I  E  F  E  K  A  I  T  K  V  A  F  S  Y  I  H  I  F  L  A  Y  Y  Y  F  I  I  N  K  Y  T  F  E  S  I  L  G  K  N  *  N  *  N  L  I  L  S  Q  F  W  N  I  *  D  P  I  Q  S  H  H  L  A  *  C  H  L  *  *  D  F  V  S  S  F  H  L  C  N  N  G  V  F  H  K  Q  L  L  I  C  R  C  W  S  I  *  *  K  *  F  F  V  G  T  N  M  T  *  G  T  R  I  Y  S  P  F  S  W  I  S  N  Q  V  T  F  *  K  H  C  T  E  I  F  H  F  S  F  G  F  S  Q  V  C  L  I  L  F  F  S  C  P  S  *  D  P  D  I  Q  *  P  Y  D  H  V  Y  H  N  </first_frame>
            <second_frame>  S  *  A  L  F  L  P  Y  *  :  *  E  E  A  K  S  L  F  I  S  N  A  I  P  L  S  L  K  R  P  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  T  T  T  L  L  *  T  N  T  H  L  N  P  F  L  V  R  T  E  I  E  T  *  F  F  L  N  S  G  T  Y  E  T  L  F  K  V  T  T  L  H  D  V  I  F  N  R  T  L  S  V  P  S  T  F  A  I  T  E  F  S  I  N  N  F  S  S  V  G  V  G  V  Y  D  E  N  N  S  L  L  E  Q  T  *  H  E  A  P  E  S  I  H  H  S  L  G  F  P  T  K  L  H  S  E  S  I  A  Q  R  S  S  I  S  P  L  D  L  A  K  F  A  *  S  F  F  F  L  V  L  L  R  T  P  T  F  S  S  P  M  T  M  F  T  T  I </second_frame>
            <third_frame>   L  R  P  Y  F  Y  R  I  S :   K  K  K  Q  N  L  Y  S  Y  Q  M  Q  F  H  *  V  *  K  G  H  H  *  G  S  L  F  L  H  T  Y  L  S  C  L  L  L  L  Y  Y  K  Q  I  H  I  *  I  H  S  W  *  E  L  K  L  K  L  N  S  F  S  I  L  E  H  M  R  P  Y  S  K  S  P  P  C  M  M  S  S  L  I  G  L  C  Q  F  L  P  P  L  Q  *  R  S  F  P  *  T  T  S  H  L  *  V  L  E  Y  M  M  K  I  I  L  C  W  N  K  H  D  M  R  H  Q  N  L  F  T  I  L  L  D  F  Q  P  S  Y  I  L  K  A  L  H  R  D  L  P  F  L  L  W  I  *  P  S  L  L  D  P  F  F  F  L  S  F  L  G  P  R  H  S  V  A  L  *  P  C  L  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="85898" PGL_stop="84302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85898" e_stop="85204"/>
            <exon e_start="85134" e_stop="84302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="0.902"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="85898" e_stop="85204" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="85203" i_stop="85135" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="85134" e_stop="84302" e_length="833"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85898" stop="85204"/>
              <exon start="85134" stop="85038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85204"/>
              <exon start="85134" stop="85023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85584" stop="85204"/>
              <exon start="85134" stop="84899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85011" stop="84302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84862" stop="84302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCAGTTAACGATTAAAAAAATATAAAAACTTTAACGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTATTAGTATTTCAAATACTTAAATTATCTGTCATTTGTGACAGAAAAAAGAAAAATGACTAATTTAAGTCAAGCAAATGCTGGAACAGTAAGTGCTGCAATAGTAAGTGTTGCAACAACATCGGTTGCACATAATCGTTCAAATGCTTCCTTAGCACCGTATGAGAAACCTACAAAGTTTTCTGGAGTTGACTTTAAGAGATGGCAGCAGAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATAAGAATGATCCTGTTATGTCAGATGAAACTCCGCCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGGGTAAAAATTATATTCTGAGTGGCATGCAAGATGATCTGTACAATGTGTACAGCAATGTCAAAACCTCAAAAGAACTCCGGGATGCTTTAGAAAAGAATTACAAAACAGAAGATGTCAAAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATAAGATGATAGACAGTAAGACAGTCATCACCCAAGTTCAAGAACTATAGGTCATAATCCATGATCTTCTTGCTGAAG : GATTGATTGTGAATGATGCATTTCAAGTTGCTGCAATTATTGAAAAGTTACCTTCGTTGTGGAAGGATTTCAAAAACTACTTAAAACATAAACGCAAGGAGATGACTATTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATAAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTCAATTGTGGTAAACATGGTCATAGGGCTACTGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAAAAAGGATCAAGCAAACTTGGCTAAATCCAAAGGAGAAATGGAAGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGAATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGTTATTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCATGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTAAGTTTCAATTTCAGTTCTTACCAAGAATGGATTCAAATGTGTATTTGTTTATAATAAAGTAGTAGTAAGCAAGAAAGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGGAATTGCATTTGATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> Q  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  S  *  R  L  K  K  Y  K  N  F  N  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  Q  I  L  K  L  S  V  I  C  D  R  K  K  K  N  D  *  F  K  S  S  K  C  W  N  S  K  C  C  N  S  K  C  C  N  N  I  G  C  T  *  S  F  K  C  F  L  S  T  V  *  E  T  Y  K  V  F  W  S  *  L  *  E  M  A  A  E  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  *  S  C  Y  V  R  *  N  S  A  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  G  *  K  L  Y  S  E  W  H  A  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  P  G  C  F  R  K  E  L  Q  N  R  R  C  Q  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  S  H  H  P  S  S  R  T  I  G  H  N  P  *  S  S  C  *  R :   I  D  C  E  *  C  I  S  S  C  C  N  Y  *  K  V  T  F  V  V  E  G  F  Q  K  L  L  K  T  *  T  Q  G  D  D  Y  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  S  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  Q  L  W  *  T  W  S  *  G  Y  *  M  S  G  S  *  E  G  Q  E  K  K  R  I  K  Q  T  W  L  N  P  K  E  K  W  K  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  E  *  I  L  V  P  H  V  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  R  S  C  L  W  K  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  H  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  K  F  Q  F  Q  F  L  P  R  M  D  S  N  V  Y  L  F  I  I  K  *  *  *  A  R  K  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  E  L  H  L  I  *  I  K  I  L  L  L  L  </first_frame>
            <second_frame>  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  V  N  D  *  K  N  I  K  T  L  T  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  Y  *  Y  F  K  Y  L  N  Y  L  S  F  V  T  E  K  R  K  M  T  N  L  S  Q  A  N  A  G  T  V  S  A  A  I  V  S  V  A  T  T  S  V  A  H  N  R  S  N  A  S  L  A  P  Y  E  K  P  T  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  K  N  D  P  V  M  S  D  E  T  P  P  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  G  K  N  Y  I  L  S  G  M  Q  D  D  L  Y  N  V  Y  S  N  V  K  T  S  K  E  L  R  D  A  L  E  K  N  Y  K  T  E  D  V  K  M  K  K  F  I  V  A  K  F  L  D  Y  K  M  I  D  S  K  T  V  I  T  Q  V  Q  E  L  *  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  S  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  I  E  D  L  I  V  R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  P  T  K  *  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  T  E  C  R  G  P  K  K  D  K  K  K  K  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  N  R  F  W  C  L  M  S  C  L  F  Q  Q  R  I  I  F  I  I  Y  S  N  T  Y  R  *  E  V  V  Y  G  K  L  R  Y  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  M  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  L  S  F  N  F  S  S  Y  Q  E  W  I  Q  M  C  I  C  L  *  *  S  S  S  K  Q  E  R  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  W  N  C  I  *  Y  E  *  R  F  C  F  F  L </second_frame>
            <third_frame>   K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  Q  L  T  I  K  K  I  *  K  L  *  R  *  I  R  N  S  L  C  K  D  L  F  F  T  I  S  I  S  N  T  *  I  I  C  H  L  *  Q  K  K  E  K  *  L  I  *  V  K  Q  M  L  E  Q  *  V  L  Q  *  *  V  L  Q  Q  H  R  L  H  I  I  V  Q  M  L  P  *  H  R  M  R  N  L  Q  S  F  L  E  L  T  L  R  D  G  S  R  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  I  R  M  I  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  W  V  K  I  I  F  *  V  A  C  K  M  I  C  T  M  C  T  A  M  S  K  P  Q  K  N  S  G  M  L  *  K  R  I  T  K  Q  K  M  S  K  *  R  N  S  L  W  Q  N  F  W  T  I  R  *  *  T  V  R  Q  S  S  P  K  F  K  N  Y  R  S  *  S  M  I  F  L  L  K  :  D  *  L  *  M  M  H  F  K  L  L  Q  L  L  K  S  Y  L  R  C  G  R  I  S  K  T  T  *  N  I  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  K  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  S  I  V  V  N  M  V  I  G  L  L  N  V  G  V  L  R  R  T  R  K  K  K  D  Q  A  N  L  A  K  S  K  G  E  M  E  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  *  I  D  S  G  A  S  C  H  V  C  S  N  K  E  L  F  S  S  Y  T  P  T  P  T  D  E  K  L  F  M  E  N  S  V  I  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  C  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  *  V  S  I  S  V  L  T  K  N  G  F  K  C  V  F  V  Y  N  K  V  V  V  S  K  K  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  G  I  A  F  D  M  N  K  D  F  A  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85771" stop="85232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFKYLNYLSFVTEKRKMTNLSQANAGTVSAAIVSVATTSVAHNRSNASLAPYEKPTKFSGVDFKRWQQKMFFYLTTLSLQKFINKNDPVMSDETPPDERFLVTEAWTHSDFLGKNYILSGMQDDLYNVYSNVKTSKELRDALEKNYKTEDVKMKKFIVAKFLDYKMIDSKTVITQVQEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84936" stop="84676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKKIPQNKRKERKHLVQKAILLRRNSMETASIVVNMVIGLLNVGVLRRTRKKKDQANLAKSKGEMEDLCAMLSECNLVGNPREW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85231" stop="85204"/>
                    <exon start="85134" stop="84908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIIHDLLAEGLIVNDAFQVAAIIEKLPSLWKDFKNYLKHKRKEMTIEDLIVRLRIEEDNKAAEKRSRGNSAISGVNFVEEDPTK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84675" stop="84469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDSGASCHVCSNKELFSSYTPTPTDEKLFMENSVIAKVEGTDKVLLKMTSCKVVTLNRVSYVPELRKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="87440" PGL_stop="88046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87440" e_stop="88046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="87440" e_stop="88046" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87440" stop="87952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87450" stop="87865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87451" stop="88046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTAGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATCTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAGTTCCCTTAAATTTCGAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCACCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGGAAATGCCTCAAGTGCCTAAAAAGCCTTGAGCACAAGGCTTGTTAAAAATGTATTGTATATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTATAAGAATTGTTTATGTAATTGTTCTTTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTAATTTGTACTCTAAGACT</gDNA_template>
            <first_frame> K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  S  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  V  P  L  N  F  E  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  T  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  G  N  A  S  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  Y  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  *  E  L  F  M  *  L  F  F  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  *  F  V  L  *  D  </first_frame>
            <second_frame>  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  *  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  L  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  *  I  S  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  P  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  E  M  P  Q  V  P  K  K  P  *  A  Q  G  L  L  K  M  Y  C  I  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  F  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  N  L  Y  S  K  T </second_frame>
            <third_frame>   K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  S  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  S  S  L  K  F  R  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  K  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  I  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  L  I  C  T  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87595" stop="87873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLSFLSQNCHIYLKSQLCLNLSSLKFRNLSCLHYQSPNFQKFQSRSFHHFQRLNFQLYQNSRFLSFLSLNCQLCQSRKCLKCLKSLEHKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="88017" PGL_stop="87739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88017" e_stop="87739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="88017" e_stop="87739" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88017" stop="87739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAAAAGAACAATTACATAAACAATTCTTATACATAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATATACAATACATTTTTAACAAGCCTTGTGCTCAAGGCTTTTTAGGCACTTGAGGCATTTCCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGGTG</gDNA_template>
            <first_frame> N  V  T  S  K  T  S  T  L  V  N  *  K  K  N  N  Y  I  N  N  S  Y  T  *  I  S  H  K  *  S  F  Q  K  E  S  F  K  Y  I  Y  D  H  T  I  Y  N  T  F  L  T  S  L  V  L  K  A  F  *  A  L  E  A  F  P  A  L  T  K  L  A  I  Q  A  *  E  *  Q  E  S  R  V  L  V  K  L  E  V  Q  P  L  K  M  V </first_frame>
            <second_frame>  M  S  L  V  R  Q  V  H  *  *  T  E  K  R  T  I  T  *  T  I  L  I  H  K  Y  H  I  N  N  L  S  K  R  K  A  S  N  T  Y  M  I  T  Q  Y  T  I  H  F  *  Q  A  L  C  S  R  L  F  R  H  L  R  H  F  R  L  *  Q  S  W  Q  F  K  L  R  N  D  R  N  L  E  F  W  *  S  W  K  F  N  L  *  K  W   </second_frame>
            <third_frame>   C  H  *  *  D  K  Y  I  S  E  L  K  K  E  Q  L  H  K  Q  F  L  Y  I  N  I  T  *  I  I  F  P  K  G  K  L  Q  I  H  I  *  S  H  N  I  Q  Y  I  F  N  K  P  C  A  Q  G  F  L  G  T  *  G  I  S  G  F  D  K  V  G  N  S  S  L  G  M  T  G  I  S  S  F  G  K  V  G  S  S  T  F  E  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="92265" PGL_stop="93605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92265" e_stop="92476"/>
            <exon e_start="93139" e_stop="93605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="92265" e_stop="92476" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92477" i_stop="93138" i_length="662"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="93139" e_stop="93605" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92265" stop="92476"/>
              <exon start="93139" stop="93605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATATATCATATCATAGAAGAAAAATGAGCCTCCATGGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCCACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCAGTTATCTTTTGGAACTTCATCCATG : ATGGAAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACAAAGGGTGAAAATAATTTAGTTACTTTGATCATAGAATATGAAAAGAAAAATGCTCATGTGCCAGATCCACACACATTCATGGAATTACTCCTGAATGTAACCAAAGATATTGAGAATTACCACATCAAGTAATACATAAATATTATACACAAGGACTCTTTGAAAATGTCGACAAGTATATGTCGAATTCTTTAAAATAATATATTTTGAAGAAATCGATATGAATACGATAACATTTTTGAATAGTTGAAACAATGTATACCAAATGCTTGGATTTAAGCTATTGTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTAAAAT</gDNA_template>
            <first_frame> V  I  Y  H  I  I  E  E  K  *  A  S  M  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  P  P  Y  L  H  H  V  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  S  Y  L  L  E  L  H  P  * :   W  K  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  E  L  K  K  R  *  L  K  E  I  Y  W  S  I  T  N  H  F  T  S  L  F  M  L  R  Q  R  V  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  W  N  Y  S  *  M  *  P  K  I  L  R  I  T  T  S  S  N  T  *  I  L  Y  T  R  T  L  *  K  C  R  Q  V  Y  V  E  F  F  K  I  I  Y  F  E  E  I  D  M  N  T  I  T  F  L  N  S  *  N  N  V  Y  Q  M  L  G  F  K  L  L  S  Q  S  L  V  I  I  C  V  V  I  S  G  C  A  L  K  </first_frame>
            <second_frame>  *  Y  I  I  S  *  K  K  N  E  P  P  W  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  H  H  I  S  T  M  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  K  N  *  K  K  D  N  *  R  R  Y  I  G  V  L  Q  I  I  L  H  H  C  S  C  *  D  K  G  *  K  *  F  S  Y  F  D  H  R  I  *  K  E  K  C  S  C  A  R  S  T  H  I  H  G  I  T  P  E  C  N  Q  R  Y  *  E  L  P  H  Q  V  I  H  K  Y  Y  T  Q  G  L  F  E  N  V  D  K  Y  M  S  N  S  L  K  *  Y  I  L  K  K  S  I  *  I  R  *  H  F  *  I  V  E  T  M  Y  T  K  C  L  D  L  S  Y  C  L  K  V  L  *  *  Y  V  L  L  L  A  G  V  L  *  N </second_frame>
            <third_frame>   D  I  S  Y  H  R  R  K  M  S  L  H  G  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  T  I  S  P  P  C  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  Q  L  S  F  G  T  S  S  M  :  M  E  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  R  I  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  V  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  H  V  P  D  P  H  T  F  M  E  L  L  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  H  K  D  S  L  K  M  S  T  S  I  C  R  I  L  *  N  N  I  F  *  R  N  R  Y  E  Y  D  N  I  F  E  *  L  K  Q  C  I  P  N  A  W  I  *  A  I  V  S  K  S  C  N  N  M  C  C  Y  *  R  V  C  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92267" stop="92476"/>
                    <exon start="93139" stop="93180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DISYHRRKMSLHGKLVSEIEIKCDGDIFYEVYRHRPTISPPCPLITYKMWMFMKVNGAQLTQLSFGTSSMMEKKWWQRRKWKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93181" stop="93399"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKKRIKKKIIEGDILEYYKSFYITVHVETKGENNLVTLIIEYEKKNAHVPDPHTFMELLLNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="96220" PGL_stop="97250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96220" e_stop="97250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="96220" e_stop="97250" e_length="1031"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96220" stop="96760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96664" stop="97250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96664" stop="97250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96664" stop="97217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCTAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATATAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAACCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAATTCCATTGAAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGAATTGAGCAACGAAATCAACAATGTCACGCTTCATCCTACTCCACAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGCAAGAATAGTGTGAATCAAATTATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTAGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGTTTCCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAACCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCCTGCCTTTCTACTTAAAGCATCCGCCACAACATTAGCTTTTCTCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATATTTCTGAGTAAAGACATACTGTAAACTGCGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTATCTATTGCTTTAATACAAACACTACTGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCGTGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  L  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  I  *  S  L  A  N  F  S  A  F  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  N  S  I  E  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  N  *  A  T  K  S  T  M  S  R  F  I  L  L  H  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  Q  E  *  C  E  S  N  Y  R  R  G  V  H  I  P  F  P  *  F  S  K  N  L  P  H  R  F  L  L  L  *  P  L  L  A  I  P  Y  L  E  S  G  S  V  S  H  Q  *  T  V  S  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  T  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  F  L  P  F  Y  L  K  H  P  P  Q  H  *  L  F  S  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  I  S  E  *  R  H  T  V  N  C  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  I  Q  T  L  L  Q  P  T  P  N  H  G  S  D  N  Y  V  R  A  P  L  I   </first_frame>
            <second_frame>  Q  H  A  M  F  S  *  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  Y  K  V  W  L  T  S  L  H  F  K  S  P  *  P  E  *  S  E  Q  T  *  L  T  C  Q  Q  S  P  K  *  S  H  T  Y  P  L  S  L  E  D  Q  P  R  I  P  L  K  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  E  Q  R  N  Q  Q  C  H  A  S  S  Y  S  T  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  K  T  F  L  I  D  F  C  F  F  S  L  S  *  Q  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  F  P  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  S  C  L  S  T  *  S  I  R  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  A  M  I  R  I  D  F  T  L  N  P  I  *  I  M  Y  L  L  L  *  Y  K  H  Y  C  S  Q  L  Q  I  M  G  Q  I  I  T  F  V  H  L  *  L  </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  I  K  F  G  *  L  L  C  I  L  S  H  L  N  R  N  E  V  S  R  L  S  *  P  V  N  N  H  P  N  R  V  I  L  T  H  C  L  W  K  T  N  H  E  F  H  *  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  E  L  S  N  E  I  N  N  V  T  L  H  P  T  P  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  A  R  I  V  *  I  K  L  S  T  R  G  T  H  T  L  P  L  I  L  K  K  P  S  S  S  I  F  A  S  L  A  S  P  S  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  N  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  L  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  Y  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  I  Y  C  F  N  T  N  T  T  A  A  N  S  K  S  W  V  R  *  L  R  S  C  T  F  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96684" stop="96923"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKLSTRGTHTLPLILKKPSSSIFASLASPSNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSSTSNLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96459" stop="96662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLPLPFRNGHSLKCPSRPLVFILYLLTIRELSNEINNVTLHPTPQKCCFRSRYILVAPGCIEYLEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96410" stop="96610"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYPLSLEDQPRIPLKFSPTSIQEWAFSEVSLQASGVHTLPADNSGIEQRNQQCHASSYSTKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="98770" PGL_stop="98110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98770" e_stop="98110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="98770" e_stop="98110" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98770" stop="98110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGAAATACTCATGTAGACTTGATTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCAAATTTTGCATTCTTAAATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCTAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGGCGGTTTCGTTAGTCCGTGAGTTTCTAGATATGTTTCCTGTAGACCTTCCTGGTATGTCACCTGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGTTCTTCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  F  D  L  H  C  D  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  R  N  T  H  V  D  L  I  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  I  S  P  N  F  A  F  L  N  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  L  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  A  V  S  L  V  R  E  F  L  D  M  F  P  V  D  L  P  G  M  S  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I  R  P  S  S  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  E  I  L  M  *  T  *  L  S  *  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  Q  I  L  H  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  *  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  R  R  F  R  *  S  V  S  F  *  I  C  F  L  *  T  F  L  V  C  H  L  I  G  I  L  T  F  A  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  L  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  F  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  E  K  Y  S  C  R  L  D  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  D  F  S  K  F  C  I  L  K  L  *  C  *  N  C  N  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  G  G  F  V  S  P  *  V  S  R  Y  V  S  C  R  P  S  W  Y  V  T  *  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  Q  R  L  H  *  T  K  F  F  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98770" stop="98111"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGFDLHCDLLDMPIRVSTPVGESVIVEKVYRSCLVTFVGRNTHVDLIILEMVDFDVILGMTWISPNFAFLNCNAKTVTLAKPGTDPLVWEGDYTSTLVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIEAVSLVREFLDMFPVDLPGMSPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLGKGFIRPSSSPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="98470" PGL_stop="98800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98470" e_stop="98800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="98470" e_stop="98800" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98470" stop="98800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATTTAAGAATGCAAAATTTGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAATCAAGTCTACATGAGTATTTCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  L  Q  F  *  H  Y  N  L  R  M  Q  N  L  E  K  S  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  S  S  L  H  E  Y  F  S  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  N  H  N  V  N  Q  N  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  Y  S  F  S  I  T  I  *  E  C  K  I  W  R  N  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  S  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  F  K  N  A  K  F  G  E  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  I  K  S  T  *  V  F  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  C  K  S  K  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98601" stop="98798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLPTKVTRQDLYTFSTITDSPTGVETRIGMSSKSQCKSKPVANEEDTYENVDPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="100034" PGL_stop="99380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100034" e_stop="99380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="100034" e_stop="99380" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100034" stop="99380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTCGCTTATCTTAGCGGGTTATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCTGGGAGTACAACATGCAACTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGAAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTCTTCACTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGGTTCTACATAAGATGGGCATAGTGGAACGATTCAGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGTACAGGAACCACCCATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGTGATAGGAAGAGAGATGAGTTCCTGAGCTTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  S  L  I  L  A  G  Y  P  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  F  W  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  K  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  T  N  S  S  L  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  R  F  Y  I  R  W  A  *  W  N  D  S  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  Y  R  N  H  P  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  V  I  G  R  E  M  S  S  *  A  *  S  K  A  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  S  </first_frame>
            <second_frame>  D  D  *  P  G  S  R  L  S  *  R  V  I  R  S  R  P  N  A  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  N  C  C  G  S  P  H  G  C  L  I  G  N  R  N  V  S  S  I  D  Y  R  A  Y  N  D  E  *  S  A  R  T  L  H  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  G  S  T  *  D  G  H  S  G  T  I  Q  C  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  V  I  V  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  *  *  E  E  R  *  V  P  E  L  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  L  G  V  Q  H  A  T  A  V  A  P  R  M  D  A  S  L  E  I  E  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  V  L  H  K  M  G  I  V  E  R  F  S  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  *  S  Y  V  E  C  Q  P  V  Q  E  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  S  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100032" stop="99658"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTPPVFSAPAPQVLGVQHATAVAPRMDASLEIETFPRLTTGPIMTSDQHELFTKFLKLKPPVFKGAESEDAYDFLVDCHEVLHKMGIVERFSVEFVTYQFQGNAKMWW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99657" stop="99424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVECQPVQEPPMTWASFSSLFMEKYIPRTLSDRKRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFSPQERIRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="109755" PGL_stop="112606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109755" e_stop="109761"/>
            <exon e_start="110404" e_stop="110418"/>
            <exon e_start="111112" e_stop="111334"/>
            <exon e_start="112030" e_stop="112606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.577" e_score="0.714"/>
          <exon-intron don_prob="0.399" acc_prob="0.000" e_score="0.533"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.965"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="109755" e_stop="109761" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.577">
            <gDNA_intron_boundary i_start="109762" i_stop="110403" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="0.533">
            <gDNA_exon_boundary e_start="110404" e_stop="110418" e_length="15"/>
          </exon>
          <intron i_serial="2" don_prob="0.399" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110419" i_stop="111111" i_length="693"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="111112" e_stop="111334" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111335" i_stop="112029" i_length="695"/>
          </intron>
          <exon e_serial="4" e_score="0.930">
            <gDNA_exon_boundary e_start="112030" e_stop="112606" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109755" stop="109761"/>
              <exon start="110404" stop="110418"/>
              <exon start="111112" stop="111334"/>
              <exon start="112030" stop="112584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="111334"/>
              <exon start="112030" stop="112606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111117" stop="111334"/>
              <exon start="112030" stop="112604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111118" stop="111334"/>
              <exon start="112030" stop="112564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111136" stop="111334"/>
              <exon start="112030" stop="112563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111137" stop="111334"/>
              <exon start="112030" stop="112568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTGAA : CCATATCCACCACAG : TTAGAACTTTGTGATATATAATATCATAGATGAAAAATGAGCCTCCATTGAAAGTTAGTTTCTGAGATAGAAATTAAGTGTGATGGAGATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATTTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGTGAATGGGGCACAGTTGACTCTGTTATCTTTTGGAACTTCATTCATG : ATGGGAAAGAAGTGGTGGCAAAGGAGAAAGTGGAAGAAATAGATGAAGAAAAGAAGCTAATTAAAAAAAAAGATAATTGAAGGAGATATATTAGAGTATTACAAATCATTTTATATCACTTTTCATGTTGAGACAAAAGGTGAAAATAATTTAGTTACTTTAATCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATCGAATTACTCCTCAATGTAACCAAAGATATTGAGAATTATCACATTAAGTGATACATAAATATTATATACGAGGACTCTTTGAAAATATCGATAAATATATGTCGAATTCTTTAAAATAATGTATTTTGAAAAAATCGATATGAATAAGATAACATTTCTGAATAATTGAAACAATGTATACCAAATGCTTGGATTTAAGTTGTTTTCTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTACTTTGAAATGTCTTGTAACAAAAATAAAATGAGCGGATATCTAATTTTTATAGATAAATAAAAAATAAAAGTTGTCATTTGATTTGCACTATAGTTTTTTTTTTCTTTTTTTA</gDNA_template>
            <first_frame> P  *   : T  I  S  T  T   : V  R  T  L  *  Y  I  I  S  *  M  K  N  E  P  P  L  K  V  S  F  *  D  R  N  *  V  *  W  R  Y  F  L  *  S  I  *  A  Q  A  T  P  Y  L  H  H  F  P  *  *  H  T  K  C  G  C  S  *  R  *  M  G  H  S  *  L  C  Y  L  L  E  L  H  S  * :   W  E  R  S  G  G  K  G  E  S  G  R  N  R  *  R  K  E  A  N  *  K  K  R  *  L  K  E  I  Y  *  S  I  T  N  H  F  I  S  L  F  M  L  R  Q  K  V  K  I  I  *  L  L  *  S  *  N  M  K  R  K  M  L  M  C  Q  I  H  T  H  S  S  N  Y  S  S  M  *  P  K  I  L  R  I  I  T  L  S  D  T  *  I  L  Y  T  R  T  L  *  K  Y  R  *  I  Y  V  E  F  F  K  I  M  Y  F  E  K  I  D  M  N  K  I  T  F  L  N  N  *  N  N  V  Y  Q  M  L  G  F  K  L  F  S  Q  S  L  V  I  I  C  V  V  I  S  G  C  T  L  K  C  L  V  T  K  I  K  *  A  D  I  *  F  L  *  I  N  K  K  *  K  L  S  F  D  L  H  Y  S  F  F  F  L  F  L </first_frame>
            <second_frame>  L  E  :  P  Y  P  P  Q  :  L  E  L  C  D  I  *  Y  H  R  *  K  M  S  L  H  *  K  L  V  S  E  I  E  I  K  C  D  G  D  I  F  Y  E  V  Y  R  H  R  P  H  H  I  S  T  I  S  P  N  N  I  Q  N  V  D  V  H  E  G  E  W  G  T  V  D  S  V  I  F  W  N  F  I  H   : D  G  K  E  V  V  A  K  E  K  V  E  E  I  D  E  E  K  K  L  I  K  K  K  D  N  *  R  R  Y  I  R  V  L  Q  I  I  L  Y  H  F  S  C  *  D  K  R  *  K  *  F  S  Y  F  N  H  R  I  *  K  E  K  C  *  C  A  R  S  T  H  I  H  R  I  T  P  Q  C  N  Q  R  Y  *  E  L  S  H  *  V  I  H  K  Y  Y  I  R  G  L  F  E  N  I  D  K  Y  M  S  N  S  L  K  *  C  I  L  K  K  S  I  *  I  R  *  H  F  *  I  I  E  T  M  Y  T  K  C  L  D  L  S  C  F  L  K  V  L  *  *  Y  V  L  L  L  A  G  V  L  *  N  V  L  *  Q  K  *  N  E  R  I  S  N  F  Y  R  *  I  K  N  K  S  C  H  L  I  C  T  I  V  F  F  F  F  F   </second_frame>
            <third_frame>   L  N :   H  I  H  H  S :   *  N  F  V  I  Y  N  I  I  D  E  K  *  A  S  I  E  S  *  F  L  R  *  K  L  S  V  M  E  I  F  F  M  K  Y  I  G  T  G  H  T  I  S  P  P  F  P  L  I  T  Y  K  M  W  M  F  M  K  V  N  G  A  Q  L  T  L  L  S  F  G  T  S  F  M  :  M  G  K  K  W  W  Q  R  R  K  W  K  K  *  M  K  K  R  S  *  L  K  K  K  I  I  E  G  D  I  L  E  Y  Y  K  S  F  Y  I  T  F  H  V  E  T  K  G  E  N  N  L  V  T  L  I  I  E  Y  E  K  K  N  A  N  V  P  D  P  H  T  F  I  E  L  L  L  N  V  T  K  D  I  E  N  Y  H  I  K  *  Y  I  N  I  I  Y  E  D  S  L  K  I  S  I  N  I  C  R  I  L  *  N  N  V  F  *  K  N  R  Y  E  *  D  N  I  S  E  *  L  K  Q  C  I  P  N  A  W  I  *  V  V  F  S  K  S  C  N  N  M  C  C  Y  *  R  V  Y  F  E  M  S  C  N  K  N  K  M  S  G  Y  L  I  F  I  D  K  *  K  I  K  V  V  I  *  F  A  L  *  F  F  F  S  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111163" stop="111334"/>
                    <exon start="112030" stop="112109"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLVSEIEIKCDGDIFYEVYRHRPHHISTISPNNIQNVDVHEGEWGTVDSVIFWNFIHDGKEVVAKEKVEEIDEEKKLIKKKDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112090" stop="112296"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKKIIEGDILEYYKSFYITFHVETKGENNLVTLIIEYEKKNANVPDPHTFIELLLNVTKDIENYHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111182" stop="111334"/>
                    <exon start="112030" stop="112071"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSVMEIFFMKYIGTGHTISPPFPLITYKMWMFMKVNGAQLTLLSFGTSFMMGKKWWQRRKWKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="123918" PGL_stop="123312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123918" e_stop="123312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="123918" e_stop="123312" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123918" stop="123406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123908" stop="123493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123907" stop="123312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATAAATTATAAGTCTTGAAGAATTTATCACCTGGCTTTATACAATGGCTTATAAGTATATTCCATCTTTTTTCTTGTTATTATTCGTCACATTGTTTTTAACAAGTAGTTATGTGATTCAAGTTGAAGCGCGCAATTTTCTTGAAGTAACTATCCCTGAGCTTCCTAAGCCAGAATTGCCACATTTACCTGAAATCCCAACTTTGCCTAAACTTGAATTCCCTGAAATTCCAAAACCTGAGTTGCCTACATTACCAAAGCCCGAATTTCCAGAAATTCCAAAGCCGGAGTTTCCATCATTTTCAAAGGTTGAACTTCCAACTTTACCAAAACTCGAGATTCCTGTCATTCCTAAGCTTGAATTGCCAACTTTGTCAAAGCCGAAAATGCCTTAAGTGCCTAAAAAGCCTTGAGCACGAGGCTTGTTAAAAATGTATTGTGTATTGTGTGATCATATATGTATTTGAAGCTTTCCTTTTGGAAAGATTATTTATGTGATATTTATGTACAAGAATTGTTTATGTAATTGTTCTGTTTTCAGTTCACTAATGTACTTGTCTTACTAGTGACATTATACACATCTTTATTTGTAATCTAAGACT</gDNA_template>
            <first_frame> K  N  I  N  Y  K  S  *  R  I  Y  H  L  A  L  Y  N  G  L  *  V  Y  S  I  F  F  L  V  I  I  R  H  I  V  F  N  K  *  L  C  D  S  S  *  S  A  Q  F  S  *  S  N  Y  P  *  A  S  *  A  R  I  A  T  F  T  *  N  P  N  F  A  *  T  *  I  P  *  N  S  K  T  *  V  A  Y  I  T  K  A  R  I  S  R  N  S  K  A  G  V  S  I  I  F  K  G  *  T  S  N  F  T  K  T  R  D  S  C  H  S  *  A  *  I  A  N  F  V  K  A  E  N  A  L  S  A  *  K  A  L  S  T  R  L  V  K  N  V  L  C  I  V  *  S  Y  M  Y  L  K  L  S  F  W  K  D  Y  L  C  D  I  Y  V  Q  E  L  F  M  *  L  F  C  F  Q  F  T  N  V  L  V  L  L  V  T  L  Y  T  S  L  F  V  I  *  D  </first_frame>
            <second_frame>  K  T  *  I  I  S  L  E  E  F  I  T  W  L  Y  T  M  A  Y  K  Y  I  P  S  F  F  L  L  L  F  V  T  L  F  L  T  S  S  Y  V  I  Q  V  E  A  R  N  F  L  E  V  T  I  P  E  L  P  K  P  E  L  P  H  L  P  E  I  P  T  L  P  K  L  E  F  P  E  I  P  K  P  E  L  P  T  L  P  K  P  E  F  P  E  I  P  K  P  E  F  P  S  F  S  K  V  E  L  P  T  L  P  K  L  E  I  P  V  I  P  K  L  E  L  P  T  L  S  K  P  K  M  P  *  V  P  K  K  P  *  A  R  G  L  L  K  M  Y  C  V  L  C  D  H  I  C  I  *  S  F  P  F  G  K  I  I  Y  V  I  F  M  Y  K  N  C  L  C  N  C  S  V  F  S  S  L  M  Y  L  S  Y  *  *  H  Y  T  H  L  Y  L  *  S  K  T </second_frame>
            <third_frame>   K  H  K  L  *  V  L  K  N  L  S  P  G  F  I  Q  W  L  I  S  I  F  H  L  F  S  C  Y  Y  S  S  H  C  F  *  Q  V  V  M  *  F  K  L  K  R  A  I  F  L  K  *  L  S  L  S  F  L  S  Q  N  C  H  I  Y  L  K  S  Q  L  C  L  N  L  N  S  L  K  F  Q  N  L  S  C  L  H  Y  Q  S  P  N  F  Q  K  F  Q  S  R  S  F  H  H  F  Q  R  L  N  F  Q  L  Y  Q  N  S  R  F  L  S  F  L  S  L  N  C  Q  L  C  Q  S  R  K  C  L  K  C  L  K  S  L  E  H  E  A  C  *  K  C  I  V  Y  C  V  I  I  Y  V  F  E  A  F  L  L  E  R  L  F  M  *  Y  L  C  T  R  I  V  Y  V  I  V  L  F  S  V  H  *  C  T  C  L  T  S  D  I  I  H  I  F  I  C  N  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0041J17.2" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123908" stop="123519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLEEFITWLYTMAYKYIPSFFLLLFVTLFLTSSYVIQVEARNFLEVTIPELPKPELPHLPEIPTLPKLEFPEIPKPELPTLPKPEFPEIPKPEFPSFSKVELPTLPKLEIPVIPKLELPTLSKPKMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="123341" PGL_stop="123619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123341" e_stop="123619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="123341" e_stop="123619" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123341" stop="123619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTCACTAGTAAGACAAGTACATTAGTGAACTGAAAACAGAACAATTACATAAACAATTCTTGTACATAAATATCACATAAATAATCTTTCCAAAAGGAAAGCTTCAAATACATATATGATCACACAATACACAATACATTTTTAACAAGCCTCGTGCTCAAGGCTTTTTAGGCACTTAAGGCATTTTCGGCTTTGACAAAGTTGGCAATTCAAGCTTAGGAATGACAGGAATCTCGAGTTTTGGTAAAGTTGGAAGTTCAACCTTTGAAAATGATG</gDNA_template>
            <first_frame> N  V  T  S  K  T  S  T  L  V  N  *  K  Q  N  N  Y  I  N  N  S  C  T  *  I  S  H  K  *  S  F  Q  K  E  S  F  K  Y  I  Y  D  H  T  I  H  N  T  F  L  T  S  L  V  L  K  A  F  *  A  L  K  A  F  S  A  L  T  K  L  A  I  Q  A  *  E  *  Q  E  S  R  V  L  V  K  L  E  V  Q  P  L  K  M  M </first_frame>
            <second_frame>  M  S  L  V  R  Q  V  H  *  *  T  E  N  R  T  I  T  *  T  I  L  V  H  K  Y  H  I  N  N  L  S  K  R  K  A  S  N  T  Y  M  I  T  Q  Y  T  I  H  F  *  Q  A  S  C  S  R  L  F  R  H  L  R  H  F  R  L  *  Q  S  W  Q  F  K  L  R  N  D  R  N  L  E  F  W  *  S  W  K  F  N  L  *  K  *   </second_frame>
            <third_frame>   C  H  *  *  D  K  Y  I  S  E  L  K  T  E  Q  L  H  K  Q  F  L  Y  I  N  I  T  *  I  I  F  P  K  G  K  L  Q  I  H  I  *  S  H  N  T  Q  Y  I  F  N  K  P  R  A  Q  G  F  L  G  T  *  G  I  F  G  F  D  K  V  G  N  S  S  L  G  M  T  G  I  S  S  F  G  K  V  G  S  S  T  F  E  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0041J17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 472 chains have been computed
$ 
$ memory statistics:
$ 392192 bytes spliced alignments in total
$ 64 spliced alignments have been stored
$ 6128 bytes was the average size of a spliced alignment
$ 38808 bytes predicted gene locations in total
$ 29 predicted gene locations have been stored
$ 1338 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 647 backtrace matrices have been allocated
$ 
$ date finished: 2010-02-05 15:03:05
-->
