<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 20:45:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435782" ref_strand="+" ref_description="SGN-E435782 [STM-62-G9]">
      <seq>gaagagcaagtttgaagaaaatgggtgctaactactcatcaacttggcatgaaactcataatatgccaatcacaccacaaatcaagagattgttattgacttcacagctacatggtgtggtccttgcaaatacatggaaccagttcttaatgactttgctgctaaatatacagacgttgagtttgtcaagattgatgtcgatgagctggatgatgtagctcaagaatatggagttcaagcaatgccaacgttcgtactgataaagaagggcaaggtagttgacaagattgttggagcagacagggatgggctacagaagaagattcagaaacacaaagctatctacgtctaaacaaaccaaaaggcagttatgtcatgagcagagtttactcgacgataggtgtctctgtagaataaaatgtcatatctgtgtcactaagaacttgttatgagtatagtaaaatccaaacaggctgatttaagcactaatattggtatatttgatatgaataagtaaaaggtctttcaggtttctgtgttcatagaatgtctaatattcatcggtgtatcctatgcccctgaactccacattagaatataaaatatgaaaatactaaagtatctttgacattgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="12032" stop="13624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12332" g_stop="12419" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12420" i_stop="12650" i_length="231">
            <donor d_prob="0.667" d_score="0.96"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12651" g_stop="12773" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="211" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12774" i_stop="12874" i_length="101">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12875" g_stop="13304" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="619" r_length="408" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="651"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E435782" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12332" e_stop="12419"/>
          <exon e_start="12651" e_stop="12773"/>
          <exon e_start="12875" e_stop="13304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCAAGTTCGAAGAAAATGGGTGCTAACTACTCATCAACTTGGCATGAGACTCATAATATGCCAATCACACCACAAAGCAAGAGGTCTCAAGTCATTGCTTTTCACTCTTCAACAAAATGGAAGCTCCATTTTGATTCTTTGAAAAATACAAACAAACTGGTAATCATTAACTGTGTACAAGACTATCACAGTATTTAGTCGTCTTTTGAGTGACCTGATAGTGTTAAAAATTTAATACTTGTGTTATAGAAGTCATTGTATATTAGAAGTTAGGCAGTACTAATCATTGGTATCTTTTGCTCTGTTGCTACTAGATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGATGTATACTCTTATTGTCTTTAACTTGATAACCCTGGTCTTTTTCCCTACAATAGTGATATTTATACGGATACTAATTTCTCTAAATCTTTGACTGTAAACAGGATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACC-AAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAAT-AAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGCACTAATATTGGTATATTTGATATGAATAAGTAAAAGGTCTTTCAGGTTTCTGGGTTCATAGACTGTCTAATATTCATCAGTGTAT-CTATGCCCCTGAACTACACTTTAGAATATAAAAAATGAAAATACTAAAA</genome_strand>
        <mrna_strand>GAAGAGCAAGTTTGAAGAAAATGGGTGCTAACTACTCATCAACTTGGCATGAAACTCATAATATGCCAATCACACCACAAATCAAGAG.......................................................................................................................................................................................................................................ATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTTAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGAT.....................................................................................................GATGTAGCTCAAGAATATGGAGTTCAAGCAATGCCAACGTTCGTACTGATAAAGAAGGGCAAGGTAGTTGACAAGATTGTTGGAGCAGACAGGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAAGGCAGTTATGTCATGAGCAGAGTTTACTCGACGATAGGTGTCTCTGTAGAATAAAATGTCATATCTGTGTCACTAAGAAC----T-TG---T----TAT-G--------A---GT-ATAGTAAAATCCAAACAGGCTGATTTAAGCACTAATATTGGTATATTTGATATGAATAAGTAAAAGGTCTTTCAGGTTTCTGTGTTCATAGAATGTCTAATATTCATCGGTGTATCCTATGCCCCTGAACTCCACATTAGAATATAAAATATGAAAATACTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435781" ref_strand="-" ref_description="SGN-E435781 [STM-62-G9]">
      <seq>gagcaagtttgaagaaaagggtgctaactactcatcaacttggcatgaaactcataatatgccaatcacaccacaaatcaagagattgttattgacttcacagctacatggtgtggtccttgcaaatacatggaaccagttcttaatgactttgctgctaaatatacagacgttgagtttgtcaagattgatgtcgatgagctggatgatgtagctcaagaatatggagttcaagcaatgccaacgttcgtactgataaagaagggcaaggtagttgacaagattgttggagcagacagggatgggctacagaagaagattcagaaacacaaagctatctacgtctaaacaaaccaaaaggcagttatgtcatgagcagagtttactcgacgataggtgtctctgtagaataaaatgtcatatctgtgtcactaagaacttgttatgagtatagtaaaatccaaacaggctgatttaagcactaatattggtatatttgatatgaataagtaaaaggtctttcaggtttctgtgttcatagaatgtctaatattcatcggtgtatcctatgcccctgaactccacattagaatataaaatatgaaaatactaaagtatctttgacattgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="12035" stop="13624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12335" g_stop="12419" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12420" i_stop="12650" i_length="231">
            <donor d_prob="0.667" d_score="0.96"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12651" g_stop="12773" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="207" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12774" i_stop="12874" i_length="101">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12875" g_stop="13304" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="615" r_length="408" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="647"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E435781" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435781" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12335" e_stop="12419"/>
          <exon e_start="12651" e_stop="12773"/>
          <exon e_start="12875" e_stop="13304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGTTCGAAGAAAATGGGTGCTAACTACTCATCAACTTGGCATGAGACTCATAATATGCCAATCACACCACAAAGCAAGAGGTCTCAAGTCATTGCTTTTCACTCTTCAACAAAATGGAAGCTCCATTTTGATTCTTTGAAAAATACAAACAAACTGGTAATCATTAACTGTGTACAAGACTATCACAGTATTTAGTCGTCTTTTGAGTGACCTGATAGTGTTAAAAATTTAATACTTGTGTTATAGAAGTCATTGTATATTAGAAGTTAGGCAGTACTAATCATTGGTATCTTTTGCTCTGTTGCTACTAGATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGATGTATACTCTTATTGTCTTTAACTTGATAACCCTGGTCTTTTTCCCTACAATAGTGATATTTATACGGATACTAATTTCTCTAAATCTTTGACTGTAAACAGGATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACC-AAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAAT-AAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGCACTAATATTGGTATATTTGATATGAATAAGTAAAAGGTCTTTCAGGTTTCTGGGTTCATAGACTGTCTAATATTCATCAGTGTAT-CTATGCCCCTGAACTACACTTTAGAATATAAAAAATGAAAATACTAAAA</genome_strand>
        <mrna_strand>GAGCAAGTTTGAAGAAAA-GGGTGCTAACTACTCATCAACTTGGCATGAAACTCATAATATGCCAATCACACCACAAATCAAGAG.......................................................................................................................................................................................................................................ATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTTAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGAT.....................................................................................................GATGTAGCTCAAGAATATGGAGTTCAAGCAATGCCAACGTTCGTACTGATAAAGAAGGGCAAGGTAGTTGACAAGATTGTTGGAGCAGACAGGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAAGGCAGTTATGTCATGAGCAGAGTTTACTCGACGATAGGTGTCTCTGTAGAATAAAATGTCATATCTGTGTCACTAAGAAC----T-TG---T----TAT-G--------A---GT-ATAGTAAAATCCAAACAGGCTGATTTAAGCACTAATATTGGTATATTTGATATGAATAAGTAAAAGGTCTTTCAGGTTTCTGTGTTCATAGAATGTCTAATATTCATCGGTGTATCCTATGCCCCTGAACTCCACATTAGAATATAAAATATGAAAATACTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244005" ref_strand="+" ref_description="SGN-E244005 [cLEE-1-O15]">
      <seq>caatcacaccacaaagcaagaggtctcaagtcattgcttttcactcttcaacaaaatggaagctccattttgattctttgaaaaatacaaacaaactgattgttattgacttcacagctacatggtgtggtccttgcaaatacatggaaccagttctcaatgactttgctgctaaatatacagacgttgagtttgtcaagattgatgtcgatgagctggatgatgtagctcaagaatatggggttcaagcaatgccaacgttcgtgctgataaagaaaggtaaggtagttgacaagattgttggagcagacaaggatgggctacagaagaagattcagaaacacaaagctatctacgtctaaacaaaccaaaggcagtaacgtaatgagcagggtttactcgacgataggtctctgtgcagaataaatgttatatctttgtcagtaagaactagttatgtactcacctatggtctttctcacttctgatagtaaaatccaaacaggctgatttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="12098" stop="13470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12398" g_stop="12495" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12496" i_stop="12650" i_length="155">
            <donor d_prob="0.694" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12651" g_stop="12773" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="221" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12774" i_stop="12874" i_length="101">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12875" g_stop="13170" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="517" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E244005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12398" e_stop="12495"/>
          <exon e_start="12651" e_stop="12773"/>
          <exon e_start="12875" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACACCACAAAGCAAGAGGTCTCAAGTCATTGCTTTTCACTCTTCAACAAAATGGAAGCTCCATTTTGATTCTTTGAAAAATACAAACAAACTGGTAATCATTAACTGTGTACAAGACTATCACAGTATTTAGTCGTCTTTTGAGTGACCTGATAGTGTTAAAAATTTAATACTTGTGTTATAGAAGTCATTGTATATTAGAAGTTAGGCAGTACTAATCATTGGTATCTTTTGCTCTGTTGCTACTAGATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGATGTATACTCTTATTGTCTTTAACTTGATAACCCTGGTCTTTTTCCCTACAATAGTGATATTTATACGGATACTAATTTCTCTAAATCTTTGACTGTAAACAGGATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAATAAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGC</genome_strand>
        <mrna_strand>CAATCACACCACAAAGCAAGAGGTCTCAAGTCATTGCTTTTCACTCTTCAACAAAATGGAAGCTCCATTTTGATTCTTTGAAAAATACAAACAAACTG...........................................................................................................................................................ATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGAT.....................................................................................................GATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAATAAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229849" ref_strand="+" ref_description="SGN-E229849 [cLEL-33-N21](-)">
      <seq>aaaagggaatttgaagatcaagtttgacattaaatttccatcaaggctaaatgcagatcagaaatctgatctcagaagggtgctatgcaggagtattgactagtcctatttttaacttaaggtgtcactaacactatcttggagttgcgcggaatgtaaatatttaacaagctttctgtagaaatgaaattgtacatattaggatataatcttaaggatgcgttccaacatttacaaatagtaagcaccaaaagaggagctaatgtagctacttctttagctgcttgcattttcttttgttggatgtaaaaggagtaagtagtttaatagctgtgttgtttgatttggaggtggatactatatattaagtattgtagttgcgagtagtggctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="14287" stop="13293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13987" g_stop="13594" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="411"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E229849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13987" e_stop="13594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTTTGTTGGATGTAAAAGGAGTAAGTAGTTTAATAGCTGTGTTGTTTGATTTGGAGGTGGATACTATATATTAAGTATTGTAGTTGCGAGTAGTGGCTCT</genome_strand>
        <mrna_strand>AAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTTTGTTGGATGTAAAAGGAGTAAGTAGTTTAATAGCTGTGTTGTTTGATTTGGAGGTGGATACTATATATTAAGTATTGTAGTTGCGAGTAGTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230348" ref_strand="+" ref_description="SGN-E230348 [cLEL-33-N21](-)">
      <seq>tcaagtttgacattaaattcccatcaaggctaaatgcagatcagaaatctgatctcagaagggtgctatgcaggagtattgactagtcctatttttaacttaaggtgtcactaacactatcttggagttgcgcggaatgtaaatatttaacaagctttctgtaaaaatgaaattgtacatattaggatataatcttaaggatgcgttccaacatttacaaatagtaagcaccaaaagaggagctaatgtagctacttctttagctgcttgcattttcttttgttggatgtaaaaggagtaagtagtttaatagctgtgttgtttgatttggaggtggatactatatattaagtattgtagttgcgagtagtggctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="14270" stop="13293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13970" g_stop="13594" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="394"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E230348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13970" e_stop="13594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTTTGTTGGATGTAAAAGGAGTAAGTAGTTTAATAGCTGTGTTGTTTGATTTGGAGGTGGATACTATATATTAAGTATTGTAGTTGCGAGTAGTGGCTCT</genome_strand>
        <mrna_strand>TCAAGTTTGACATTAAATTCCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAAAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTTTGTTGGATGTAAAAGGAGTAAGTAGTTTAATAGCTGTGTTGTTTGATTTGGAGGTGGATACTATATATTAAGTATTGTAGTTGCGAGTAGTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421237" ref_strand="+" ref_description="SGN-E421237 [STM-32-D11]">
      <seq>tttcttttttactcgcaactacaatacttcatatatagcatccacctccaaatcaaacaacacagctattaaactacttactccttttacatccaacaaaagaaaatgtaagcagctaaagtagcagctacattagctcctcttttggtgcttactatttgtaaatgttggaaggcatccttaagattatatcctcatatgcacaatttcatttctacagaaaggaggcaaaatatttacattccgcagcaactccaagatagtgttagtgacaccttaagttaaacataggactagtcaatgctcctgcatagcacccttctgagatcagatttctgatctgcatttagccttgatggaaatttaatgtcaaacctgatcttcagattcccttttttgccacgttcctttgatattggcattccctcattttggattatcaggtcctgtcctggtttgacaatctctttgattggtattgtgagttcccttccgtccaaagtagtcaagctgatagtttttccagtgagagcatctagtaaagatattttctgattcatgactagatcatttccatccctcttgaagacagcatgtggcttttcatctatcacaaaaataagatcaccaggggcagctccatattcatagtcccctttctctggaaaaagtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="13302" stop="14568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13602" g_stop="14268" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="677" r_length="668" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E421237" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13602" e_stop="14268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGCAACTACAATACTTAATATATAGTATCCACCTCCAAATCAAACAACACAGCTATTAAACTACTTACTCCTTTTACATCCAACAAAAGAAAATGCAAGCAGCTAAAGAAGTAGCTACATTAGCTCCTCTTTTGGTGCTTACTATTTGTAAATGTTGGAACGCATCCTTAAGATTATATCCTAATATGTACAATTTCATTTCTACAGAAAGCTTGTTAAATATTTACATTCCGC-GCAACTCCAAGATAGTGTTAGTGACACCTTAAGTTAAAAATAGGACTAGTCAATACTCCTGCATAGCACCCTTCTGAGATCAGATTTCTGATCTGCATTTAGCCTTGATGGAAATTTAATGTCAAACTTGATCTTCAAATTCCCTTTTTTGCCACGTTCCTTTGATATTGGCATTCCCTCATTTTGGATTATCAGCTCCTGTCCTGGTTTGACGATTTCTTTGATTGGTATTGTGAGTTCCCTTCCGTCCAAAGTAGTCAAGCTGATAGTTTTTCCAGTGAGAGCATCCAGTAACGATATTTTCTGATTCGTGACTAGATCATTTCCATCCCTCTTGAAGACAGCATGTGGCTTTTCATCAATCACAAAAATAAGATCACCCGGGGCAGCTCCATATTCATAGTCCCCTTTCTCTGGAAAAGTTATTTT</genome_strand>
        <mrna_strand>TACTCGCAACTACAATACTTCATATATAGCATCCACCTCCAAATCAAACAACACAGCTATTAAACTACTTACTCCTTTTACATCCAACAAAAGAAAATGTAAGCAGCTAAAGTAGCAGCTACATTAGCTCCTCTTTTGGTGCTTACTATTTGTAAATGTTGGAAGGCATCCTTAAGATTATATCCTCATATGCACAATTTCATTTCTACAGAAAGGAGGCAAAATATTTACATTCCGCAGCAACTCCAAGATAGTGTTAGTGACACCTTAAGTTAAACATAGGACTAGTCAATGCTCCTGCATAGCACCCTTCTGAGATCAGATTTCTGATCTGCATTTAGCCTTGATGGAAATTTAATGTCAAACCTGATCTTCAGATTCCCTTTTTTGCCACGTTCCTTTGATATTGGCATTCCCTCATTTTGGATTATCAGGTCCTGTCCTGGTTTGACAATCTCTTTGATTGGTATTGTGAGTTCCCTTCCGTCCAAAGTAGTCAAGCTGATAGTTTTTCCAGTGAGAGCATCTAGTAAAGATATTTTCTGATTCATGACTAGATCATTTCCATCCCTCTTGAAGACAGCATGTGGCTTTTCATCTATCACAAAAATAAGATCACCAGGGGCAGCTCCATATTCATAGTCCCCTTTCTCTGGAAAAAGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407486" ref_strand="+" ref_description="SGN-E407486 [PPI-7-B11]">
      <seq>gcttggaggagctttacaaaggctctagaaggaaaatgaaagacttcaaggcttcttcttgatgcgtctggtaagccaacaactgttgaagaggtcttaagctatacacatcaaaccaggttggaagaaaggcacaaaaataacttttccagagaaaggggactatgaatatggagctgcccctggtgatcttatttttgtgatagatgaaaagccacatgctgtcttcaagaagggatggaaatgatctagtcatgaatcagaaaatatctttactagatgctctcactggaaaaactatcagcttgactactttggacggaagggaactcacaataccaatcaaagagattgtcaaaccaggacaggacctgataatccaaaatgagggaatgccaatatcaaaggaacgtggcaaaaaagggaatctgaagatcaggtttgacattaaatttccatcaaggctaaatgcagatcagaaatctgatctcagaagggtgctatgcaggagcattgactagtcctatgtttaacttaaggtgtcactaacactatctttggagttgctgcggaatgtaaatattttgcctcctttctgtagaaatgaaattgtgcatatgaagatataatcttaangatgccttccaacatttacaaatagtaagcaccaaaagaggagctaatgtagctgctactttagctgcttacattttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="16634" stop="13391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16334" g_stop="16265" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16264" i_stop="14333" i_length="1932">
            <donor d_prob="0.941" d_score="0.82"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14332" g_stop="13691" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="717" r_length="646" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E407486" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16334" e_stop="16265"/>
          <exon e_start="14332" e_stop="13691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAA-GATCTCAAGGATTCTTCTGGATGACTCTGGGTAGGTATACCTTATATTATACAAGTATATTTGTGCGTCATCGTTGAATACGTAATTCCACATCTTTGTTCCTATATTAAATATATATCTTTGATGAATTCGAAAAATATAAATATTTTTTTTATTATAGCATGGCTTTGTTTATTTTTAGTCAATTTACTTTTTTTTGAATCAAAAAGTTAATTTACTTTTCTTCTGAGGCATTGACTGAGATTATTGTACTTTCTGAATCAAAATTGTTCTGTTGCTGGAACTAATTTTCATTTTTAGTCATCAAATTGCTGAGATTGAATGCAAATTTGATAGCAAAAGAAGTAGGTGTTTTGGTATTTGTTTGAATTCTGGAGGATAGAAGTTGATGTTTTTCAATTGCTGAATTTGGTAACAGCTGAATTGTCTATGACTTTTTTGGGTGTTTCGGCGAAACTGAGGTCCTTTATGCTTCTATGGTTATTAGATACTCTCTACCTGGTTCATAGACAAAAGTTCCAATTTCTGTTTTCAAATCGCGTCCTTGGTGGAGTATGGTAGAAGTTTGATAGCTCTTTGACATCCCAATGTGTATCAGCTAGTATCTTGCTTGACATAGCTATAAAGAACATGGTTTGAAATGGCAATGAGGTTAGAACACCTAGGTGTTGTAGCAAAAATCTATTTGATAGAATTGAGCTATGTGCTCGGACTTTTCAAAATGTTAATGGGTGTGTGTCAGATACTCCAAAAATAGTGTCTTTTAGAGAATGTGACATAGGTGCGGCAATGTTTTTGGAGAGTCCACATAACATAGGAATTGAGGATTAAGTAGGATCATTATCCTATGAGTGTTAAGTTTTTGCTCTGAAAGATGATATTCACTTCGGTAAAGTTATAACCTTCATATTTTTTATTTTTAGTGGTTGAAAACTATGTTCACAACAACTATAGTAGTTGAGACTGGCTAAAGGATTAATACCCATTTTACTCTGATTGGACCCATGTCATTTTATTACTCAATAATTTGGCTTTGTGATACTAGAAGTTCTCTTCAATTTGTACTGACAAGCTAGCTGTCAACCTACTGCAAAGTTGTTTCTGTGCCCATGACTTACAAAAATATCTTTAAGTGAGATTAATGTCTTAAATGCATCTTGACCAAATGGTTTTCAGCTAATTGAGTGGATTAGATATTTATTTTGTTAACTCTGGTGCTTTTGCACATCCTCCATTCGTACATTAACAAAACATGTAATGCTGTCATTTCTTTGTTACTTAACAAGTCGTAAAGGTTGAAAAAGACATGTGATTGTTTTAAAGAAAATACATGGCAATTCTTTCTTTTAGGAATCAAAAGCTCTTAAACCCAGGCCAGTTTGCAGATGTATATCAAAGTCCCTGTTGATTAATGCTTATTTATGGTCACCAGGGAGGTAGATTGATCTCGGTTACAATTCCCCTGTTCAAAATATTTAATTGTCTCATATTTGAGCCAACCCTATCCTTATTATTGCTTTACCCAATCTTATATTGTCCACACTCCAAATGTCTAATTCTATGTGTGTATGATCTTCCGTAATCCATTCCTCGCCACATGAACTAACTTTACTGTCCCATTTTCTTTATAGATAGAGCTTATGATTACCTTGGTATGCTGATTGATCGTGCTCAGTGTTTTGATTCCCGTGTGCAATGATAAAACTACTTTAAAAACTTTAGTTAATGGGAGGCAAAACTTTTAGCTACTGAAAGGAATAGTTCTTTCTTCGGAGGGTCAAGGTGAGGGTTGGGGTAGCAAAGCAATGGCAAATATTGACAATAGTTCTGCAAATATGTGGATAACAAGCCATGAATGTATTAAATTATGAAGTTTCACTCAATTATTCCACTCCGTCCGTGGCTCTAACCTCAAGTCCTACTGTAATCACCTTTCTTCCATTTGTGAATTTGTTTTTGCAGTAAGCCAACAACTGTTGAAGAGGTCTT-AGCAATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCGGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAG-AGGGATGGAAATGATCTAGTCACGAATCAGAAAATATCGTTACTGGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAAATCGTCAAACCAGGACAGGAGCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATC-TTGGAGTTGC-GCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTT</genome_strand>
        <mrna_strand>GCTTGGAGGAGCTTTACAAAGGCTCTAGAAGGAAAATGAAAGACTTCAAGGCTTCTTCTTGATGCGTCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCAACAACTGTTGAAGAGGTCTTAAGCTATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCTGGTGATCTTATTTTTGTGATAGATGAAAAGCCACATGCTGTCTTCAAGAAGGGATGGAAATGATCTAGTCATGAATCAGAAAATATCTTTACTAGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAGATTGTCAAACCAGGACAGGACCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATCTGAAGATCAGGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGCATTGACTAGTCCTATGTTTAACTTAAGGTGTCACTAACACTATCTTTGGAGTTGCTGCGGAATGTAAATATTTTGCCTCCTTTCTGTAGAAATGAAATTGTGCATATGAAGATATAATCTTAANGATGCCTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTGCTACTTTAGCTGCTTACATTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233280" ref_strand="+" ref_description="SGN-E233280 [cLED-6-B8]">
      <seq>caggttggaagaaaggcacaaaaataacttttccagagaaaggggactatgaatatggagctgccccgggtgatcttatttttgtgattgatgaaaagccacatgctgtcttcaagagggatggaaatgatctagtcacgaatcagaaaatatcgttactggatgctctcactggaaaaactatcagcttgactactttggacggaagggaactcacaataccaatcaaagaaatcgtcaaaccaggacaggagctgataatccaaaatgagggaatgccaatatcaaaggaacgtggcaaaaaagggaatttgaagatcaagtttgacattaaatttccatcaaggctaaatgcagatcagaaatctgatctcagaagggtgctatgcaggagtattgactagtcctatttttaacttaaggtgtcactaacactatcttggagttgcgcggaatgtaaatatttaacaagctttctgtagaaatgaaattgtacatattaggatataatcttaaggatgcgttccaacatttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="14588" stop="13450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14288" g_stop="13750" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E233280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14288" e_stop="13750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCGGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGATCTAGTCACGAATCAGAAAATATCGTTACTGGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAAATCGTCAAACCAGGACAGGAGCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAA</genome_strand>
        <mrna_strand>CAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCGGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGATCTAGTCACGAATCAGAAAATATCGTTACTGGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAAATCGTCAAACCAGGACAGGAGCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421236" ref_strand="+" ref_description="SGN-E421236 [STM-32-D11]">
      <seq>gcttggaggagctttacaaaggatctagaaggaaaatgaagatttcaaggattcttcttgatgattctggtaagccaacaactgttgaagaggtcttagctatacacatcaaaccaggttggaagaaaggcacaaaaataacttttccagagaaaggggactatgaatatggagctgcccctggtgatcttatttttgtgatagatgaaaagccacatgctgtcttcaagagggatggaaatgatctagtcatgaatcagaaaatatctttactagatgctctcactggaaaaactatcagcttgactactttggacggaagggaactcacaataccaatcaaagagattgtcaaaccaggacaggacctgataatccaaaatgagggaatgccaatatcaaaggaacgtggcaaaaaagggaatctgaagatcaggtttgacattaaatttccatcaaggctaaatgcagatcagaaatctgatctcagaagggtgctatgcaggagcattgactagtcctatgtttaacttaaggtgtcactaacactatcttggagttgctgcngaatgtaaatattttgcctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="16634" stop="13523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16334" g_stop="16265" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16264" i_stop="14333" i_length="1932">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14332" g_stop="13813" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="591" r_length="521" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E421236" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16334" e_stop="16265"/>
          <exon e_start="14332" e_stop="13813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATCTCAAGGATTCTTCTGGATGACTCTGGGTAGGTATACCTTATATTATACAAGTATATTTGTGCGTCATCGTTGAATACGTAATTCCACATCTTTGTTCCTATATTAAATATATATCTTTGATGAATTCGAAAAATATAAATATTTTTTTTATTATAGCATGGCTTTGTTTATTTTTAGTCAATTTACTTTTTTTTGAATCAAAAAGTTAATTTACTTTTCTTCTGAGGCATTGACTGAGATTATTGTACTTTCTGAATCAAAATTGTTCTGTTGCTGGAACTAATTTTCATTTTTAGTCATCAAATTGCTGAGATTGAATGCAAATTTGATAGCAAAAGAAGTAGGTGTTTTGGTATTTGTTTGAATTCTGGAGGATAGAAGTTGATGTTTTTCAATTGCTGAATTTGGTAACAGCTGAATTGTCTATGACTTTTTTGGGTGTTTCGGCGAAACTGAGGTCCTTTATGCTTCTATGGTTATTAGATACTCTCTACCTGGTTCATAGACAAAAGTTCCAATTTCTGTTTTCAAATCGCGTCCTTGGTGGAGTATGGTAGAAGTTTGATAGCTCTTTGACATCCCAATGTGTATCAGCTAGTATCTTGCTTGACATAGCTATAAAGAACATGGTTTGAAATGGCAATGAGGTTAGAACACCTAGGTGTTGTAGCAAAAATCTATTTGATAGAATTGAGCTATGTGCTCGGACTTTTCAAAATGTTAATGGGTGTGTGTCAGATACTCCAAAAATAGTGTCTTTTAGAGAATGTGACATAGGTGCGGCAATGTTTTTGGAGAGTCCACATAACATAGGAATTGAGGATTAAGTAGGATCATTATCCTATGAGTGTTAAGTTTTTGCTCTGAAAGATGATATTCACTTCGGTAAAGTTATAACCTTCATATTTTTTATTTTTAGTGGTTGAAAACTATGTTCACAACAACTATAGTAGTTGAGACTGGCTAAAGGATTAATACCCATTTTACTCTGATTGGACCCATGTCATTTTATTACTCAATAATTTGGCTTTGTGATACTAGAAGTTCTCTTCAATTTGTACTGACAAGCTAGCTGTCAACCTACTGCAAAGTTGTTTCTGTGCCCATGACTTACAAAAATATCTTTAAGTGAGATTAATGTCTTAAATGCATCTTGACCAAATGGTTTTCAGCTAATTGAGTGGATTAGATATTTATTTTGTTAACTCTGGTGCTTTTGCACATCCTCCATTCGTACATTAACAAAACATGTAATGCTGTCATTTCTTTGTTACTTAACAAGTCGTAAAGGTTGAAAAAGACATGTGATTGTTTTAAAGAAAATACATGGCAATTCTTTCTTTTAGGAATCAAAAGCTCTTAAACCCAGGCCAGTTTGCAGATGTATATCAAAGTCCCTGTTGATTAATGCTTATTTATGGTCACCAGGGAGGTAGATTGATCTCGGTTACAATTCCCCTGTTCAAAATATTTAATTGTCTCATATTTGAGCCAACCCTATCCTTATTATTGCTTTACCCAATCTTATATTGTCCACACTCCAAATGTCTAATTCTATGTGTGTATGATCTTCCGTAATCCATTCCTCGCCACATGAACTAACTTTACTGTCCCATTTTCTTTATAGATAGAGCTTATGATTACCTTGGTATGCTGATTGATCGTGCTCAGTGTTTTGATTCCCGTGTGCAATGATAAAACTACTTTAAAAACTTTAGTTAATGGGAGGCAAAACTTTTAGCTACTGAAAGGAATAGTTCTTTCTTCGGAGGGTCAAGGTGAGGGTTGGGGTAGCAAAGCAATGGCAAATATTGACAATAGTTCTGCAAATATGTGGATAACAAGCCATGAATGTATTAAATTATGAAGTTTCACTCAATTATTCCACTCCGTCCGTGGCTCTAACCTCAAGTCCTACTGTAATCACCTTTCTTCCATTTGTGAATTTGTTTTTGCAGTAAGCCAACAACTGTTGAAGAGGTCTTAGCAATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCGGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGATCTAGTCACGAATCAGAAAATATCGTTACTGGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAAATCGTCAAACCAGGACAGGAGCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGC-GCGGAATGTAAATATTTAACAAGCTTT</genome_strand>
        <mrna_strand>GCTTGGAGGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATTTCAAGGATTCTTCTTGATGATTCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCAACAACTGTTGAAGAGGTCTTAGCTATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCTGGTGATCTTATTTTTGTGATAGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGATCTAGTCATGAATCAGAAAATATCTTTACTAGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAGATTGTCAAACCAGGACAGGACCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATCTGAAGATCAGGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGCATTGACTAGTCCTATGTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCTGCNGAATGTAAATATTTTGCCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569797" ref_strand="+" ref_description="SGN-E569797 [14283]">
      <seq>gagaagcagaagcgaaatcaagcagatttctgaggcgtatgatgtgcttagtgatcctcagaagcgtcagatctatgatttgtacggtgaagatgcgttgaagtctggtcaatttacttcggcgtcgccgactagtgctggtagtgggactggtaatggtagagggtttagattcaatacgcgtgatgcggaggatatttttgctgagatttttggtggatcagaggggtttagtagtggttctggtgccggagttggtcggaaagcggcgccggtggagaataaacttccgtgtagcttgggaggagctttacaaaggatctagaaggaaaatgaagatttcaaggattcttcttgatgattctggtaagccaacaactgttgaagaggtcttagcaatacacatcaaaccaggttggaagaaaggcacaaaaataacttttccaggagaaaggggactatgaatatggagctgcccctgggtgatcttatttttgtgatagatgaaaagcacattgctgtcttcagagggatggaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="16929" stop="13859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16631" g_stop="16265" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16264" i_stop="14333" i_length="1932">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14332" g_stop="14159" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="542" r_length="175" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E569797" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16631" e_stop="16265"/>
          <exon e_start="14332" e_stop="14159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGCAGAAGCGAAATTCAAGCAGATTTCTGAGGCGTATGATGTGCTTAGTGATCCTCAGAAGCGTCAGATCTATGATTTGTACGGTGACGATGCGTTGAAGTCTGGTCAATTTGCTTCGGCATCGCCGACTAGTGCTGGTAGTGGGACTGGTAATGGTAGAGGGTTTAGATTCAATACGCGTGATGCGGAGGATATTTTTGCTGAGTTTTTTGGTGGATCGGAGGGGCTTAGTAGTGGTTCTGGTGCCGGAGTTGGTAGGAAAGCAGCGCCGGTGGAGAATAAACTTCCGTGTAGCTT-GGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATCTCAAGGATTCTTCTGGATGACTCTGGGTAGGTATACCTTATATTATACAAGTATATTTGTGCGTCATCGTTGAATACGTAATTCCACATCTTTGTTCCTATATTAAATATATATCTTTGATGAATTCGAAAAATATAAATATTTTTTTTATTATAGCATGGCTTTGTTTATTTTTAGTCAATTTACTTTTTTTTGAATCAAAAAGTTAATTTACTTTTCTTCTGAGGCATTGACTGAGATTATTGTACTTTCTGAATCAAAATTGTTCTGTTGCTGGAACTAATTTTCATTTTTAGTCATCAAATTGCTGAGATTGAATGCAAATTTGATAGCAAAAGAAGTAGGTGTTTTGGTATTTGTTTGAATTCTGGAGGATAGAAGTTGATGTTTTTCAATTGCTGAATTTGGTAACAGCTGAATTGTCTATGACTTTTTTGGGTGTTTCGGCGAAACTGAGGTCCTTTATGCTTCTATGGTTATTAGATACTCTCTACCTGGTTCATAGACAAAAGTTCCAATTTCTGTTTTCAAATCGCGTCCTTGGTGGAGTATGGTAGAAGTTTGATAGCTCTTTGACATCCCAATGTGTATCAGCTAGTATCTTGCTTGACATAGCTATAAAGAACATGGTTTGAAATGGCAATGAGGTTAGAACACCTAGGTGTTGTAGCAAAAATCTATTTGATAGAATTGAGCTATGTGCTCGGACTTTTCAAAATGTTAATGGGTGTGTGTCAGATACTCCAAAAATAGTGTCTTTTAGAGAATGTGACATAGGTGCGGCAATGTTTTTGGAGAGTCCACATAACATAGGAATTGAGGATTAAGTAGGATCATTATCCTATGAGTGTTAAGTTTTTGCTCTGAAAGATGATATTCACTTCGGTAAAGTTATAACCTTCATATTTTTTATTTTTAGTGGTTGAAAACTATGTTCACAACAACTATAGTAGTTGAGACTGGCTAAAGGATTAATACCCATTTTACTCTGATTGGACCCATGTCATTTTATTACTCAATAATTTGGCTTTGTGATACTAGAAGTTCTCTTCAATTTGTACTGACAAGCTAGCTGTCAACCTACTGCAAAGTTGTTTCTGTGCCCATGACTTACAAAAATATCTTTAAGTGAGATTAATGTCTTAAATGCATCTTGACCAAATGGTTTTCAGCTAATTGAGTGGATTAGATATTTATTTTGTTAACTCTGGTGCTTTTGCACATCCTCCATTCGTACATTAACAAAACATGTAATGCTGTCATTTCTTTGTTACTTAACAAGTCGTAAAGGTTGAAAAAGACATGTGATTGTTTTAAAGAAAATACATGGCAATTCTTTCTTTTAGGAATCAAAAGCTCTTAAACCCAGGCCAGTTTGCAGATGTATATCAAAGTCCCTGTTGATTAATGCTTATTTATGGTCACCAGGGAGGTAGATTGATCTCGGTTACAATTCCCCTGTTCAAAATATTTAATTGTCTCATATTTGAGCCAACCCTATCCTTATTATTGCTTTACCCAATCTTATATTGTCCACACTCCAAATGTCTAATTCTATGTGTGTATGATCTTCCGTAATCCATTCCTCGCCACATGAACTAACTTTACTGTCCCATTTTCTTTATAGATAGAGCTTATGATTACCTTGGTATGCTGATTGATCGTGCTCAGTGTTTTGATTCCCGTGTGCAATGATAAAACTACTTTAAAAACTTTAGTTAATGGGAGGCAAAACTTTTAGCTACTGAAAGGAATAGTTCTTTCTTCGGAGGGTCAAGGTGAGGGTTGGGGTAGCAAAGCAATGGCAAATATTGACAATAGTTCTGCAAATATGTGGATAACAAGCCATGAATGTATTAAATTATGAAGTTTCACTCAATTATTCCACTCCGTCCGTGGCTCTAACCTCAAGTCCTACTGTAATCACCTTTCTTCCATTTGTGAATTTGTTTTTGCAGTAAGCCAACAACTGTTGAAGAGGTCTTAGCAATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCA-GAGAAAGGGGACTATGAATATGGAGCTGCCCC-GGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGA</genome_strand>
        <mrna_strand>GAGAAGCAGAAGCGAAA-TCAAGCAGATTTCTGAGGCGTATGATGTGCTTAGTGATCCTCAGAAGCGTCAGATCTATGATTTGTACGGTGAAGATGCGTTGAAGTCTGGTCAATTTACTTCGGCGTCGCCGACTAGTGCTGGTAGTGGGACTGGTAATGGTAGAGGGTTTAGATTCAATACGCGTGATGCGGAGGATATTTTTGCTGAGATTTTTGGTGGATCAGAGGGGTTTAGTAGTGGTTCTGGTGCCGGAGTTGGTCGGAAAGCGGCGCCGGTGGAGAATAAACTTCCGTGTAGCTTGGGAGGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATTTCAAGGATTCTTCTTGATGATTCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCAACAACTGTTGAAGAGGTCTTAGCAATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGGAGAAAGGGGACTATGAATATGGAGCTGCCCCTGGGTGATCTTATTTTTGTGATAGATGAAAAGCACATTGCTGTCTTC-AGAGGGATGGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323626" ref_strand="+" ref_description="SGN-E323626 [cTOC-2-J24]">
      <seq>gtggtgattattccaacggttagctacaatgggagttgattactataacttactgaaagtatctaggaatgcgagtgaagaagatttgaagagatcgtacaagcgattagcgatgaaatggcatccagataagaatagtcagaacaataaggaagcagaagcgaaattcaagcagatttctgaggcgtatgatgtgcttagtgatcctcagaagcgtcagatctatgatttgtacggtgacgatgcgttgaagtctggtcaatttgcttcggcatcgccgactagtgctggtagtgggactggtaatggtagagggtttagattcaatacgcgtgatgcggaggatatttttgctgagttttttggtggatcggaggggcttagtagtggttctggtgccggagttggtaggaaagcagcgccggtggagaataaacttccgtgtagcttggaagagctttacaaaggatctagaaggaaaatgaagatctcaaggattcttctggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="17080" stop="15970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16780" g_stop="16270" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E323626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16780" e_stop="16270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGATTATTCCAACGGTTAGCTACAATGGGAGTTGATTACTATAACTTACTGAAAGTATCTAGGAATGCGAGTGAAGAAGATTTGAAGAGATCGTACAAGCGATTAGCGATGAAATGGCATCCAGATAAGAATAGTCAGAACAATAAGGAAGCAGAAGCGAAATTCAAGCAGATTTCTGAGGCGTATGATGTGCTTAGTGATCCTCAGAAGCGTCAGATCTATGATTTGTACGGTGACGATGCGTTGAAGTCTGGTCAATTTGCTTCGGCATCGCCGACTAGTGCTGGTAGTGGGACTGGTAATGGTAGAGGGTTTAGATTCAATACGCGTGATGCGGAGGATATTTTTGCTGAGTTTTTTGGTGGATCGGAGGGGCTTAGTAGTGGTTCTGGTGCCGGAGTTGGTAGGAAAGCAGCGCCGGTGGAGAATAAACTTCCGTGTAGCTTGGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATCTCAAGGATTCTTCTGGATGAC</genome_strand>
        <mrna_strand>GTGGTGATTATTCCAACGGTTAGCTACAATGGGAGTTGATTACTATAACTTACTGAAAGTATCTAGGAATGCGAGTGAAGAAGATTTGAAGAGATCGTACAAGCGATTAGCGATGAAATGGCATCCAGATAAGAATAGTCAGAACAATAAGGAAGCAGAAGCGAAATTCAAGCAGATTTCTGAGGCGTATGATGTGCTTAGTGATCCTCAGAAGCGTCAGATCTATGATTTGTACGGTGACGATGCGTTGAAGTCTGGTCAATTTGCTTCGGCATCGCCGACTAGTGCTGGTAGTGGGACTGGTAATGGTAGAGGGTTTAGATTCAATACGCGTGATGCGGAGGATATTTTTGCTGAGTTTTTTGGTGGATCGGAGGGGCTTAGTAGTGGTTCTGGTGCCGGAGTTGGTAGGAAAGCAGCGCCGGTGGAGAATAAACTTCCGTGTAGCTTGGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATCTCAAGGATTCTTCTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551836" ref_strand="+" ref_description="SGN-E551836 [cTSB-1-P9]">
      <seq>cacaaaacaaaagaaaaacttatcactcaaatatagaaaatggagaaggcatcaagaatcttgttctctctttttgttgtgttcattttgttaggttcaccttcatgtatggtgatgggacaaggcaaggcatgtaaaaatgtcaaagattgttatactttattttgcaaacatgaacatctagtttgtttagatggacattgtatatgcaatgagtcaccaaaagaatttgtagcttcttgcaaaaatggtggttattgtaagaatccatgaaaggtgtaacaaaatattttatcttattattctagtaaactaataataaatatagctattaccattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="24026" stop="25159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24326" g_stop="24419" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24420" i_stop="24612" i_length="193">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24613" g_stop="24859" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="341" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="374"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E551836" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24326" e_stop="24419"/>
          <exon e_start="24613" e_stop="24859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACAAAAGAAAAACTTATCACTCAAATATAGAAAATGGAGAAGGCATCAAGAATCTTGTTCTCTCTTTTTGTTGTGTTCATTTTGTTAGGTTAGATTTCTTTCAATTTTCTCTCTTTATTTTTCGTAAAAGATTCGATACTGCAAATGACATTTTACATTGATTGTTTTCATCTTAACCCCGCCCCAATCACCTCATCTCATCCATAGCAATTATTTCTATTTATTTTCAATGAATTTAACTATTGATCTTAACTTTTTTTTTTTAATTGTTTCTTATATAGGTTCACCTTCATGTATGGTGATGGGACAAGGCAAGGCATGTAAAAATGTCAAAGATTGTTATACTTTATTTTGCAAACATGAACATCTAGTTTGTTTAGATGGACATTGTATATGCAATGAGTCACCAAAAGAATTTGTAGCTTCTTGCAAAAATGGTGGTGATTGTAAGAATCCATGAAAGGTGTAACAAAATATTTTATCTTATTATTCTAGTAAACTAATAATAAATATAGCTATTACCATTTT</genome_strand>
        <mrna_strand>CACAAAACAAAAGAAAAACTTATCACTCAAATATAGAAAATGGAGAAGGCATCAAGAATCTTGTTCTCTCTTTTTGTTGTGTTCATTTTGTTAG.................................................................................................................................................................................................GTTCACCTTCATGTATGGTGATGGGACAAGGCAAGGCATGTAAAAATGTCAAAGATTGTTATACTTTATTTTGCAAACATGAACATCTAGTTTGTTTAGATGGACATTGTATATGCAATGAGTCACCAAAAGAATTTGTAGCTTCTTGCAAAAATGGTGGTTATTGTAAGAATCCATGAAAGGTGTAACAAAATATTTTATCTTATTATTCTAGTAAACTAATAATAAATATAGCTATTACCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551801" ref_strand="+" ref_description="SGN-E551801 [cTSB-1-O10]">
      <seq>atcattatctattgagatatagtatacaaaatggagaagacatcaattgttttgctctcccttattgccttgataattttgttaggttcaccatcgtgtatggcagcaacgtgtaaaacatcaaaagattgtgatcctagaggttgtggaagtcgaggtatgctatgccttaatggagtttgtgtgtgtccctctgaaataaggaagaatggctgcaccaaagatagtgattgtgtaagcctatgtcctcctaaaactttgccatcttgtaataaaggaatttgcttttgtggacatcatgtataacctaatacatgtttgagttataagagaacatttttttttttatatcattaatagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="36985" stop="38194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37285" g_stop="37369" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37370" i_stop="37621" i_length="252">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37622" g_stop="37880" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="344" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E551801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37285" e_stop="37369"/>
          <exon e_start="37622" e_stop="37880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAGGTACCCCCCCCCCCCCCCCACACACACACAAACCAAGAATTTTATATATGTATACATAGAATATGATTCTCTTTTATGAAATTAAAGGGGTTCAGATGAACCCTCTTGTACAGCTAGTTGAAGCCTTTAGCATGTTATTCTAATAAATGTCATGTATTATACACAAATGCGTAGTTTTGTTTGACTTATACATTGAATATTTAATTTCGATAAATATATCTTAATTAATTTTTTCTTTTGGTTTTTTTCTAGGTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</genome_strand>
        <mrna_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAG............................................................................................................................................................................................................................................................GTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551844" ref_strand="+" ref_description="SGN-E551844 [cTSB-2-A18]">
      <seq>atcattatctattgagatatagtatacaaaatggagaagacatcaattgttttgctctcccttattgccttgataattttgttaggttcaccatcgtgtatggcagcaacgtgtaaaacatcaaaagattgtgatcctagaggttgtggaagtcgaggtatgctatgccttaatggagtttgtgtgtgtccctctgaaataaggaagaatggctgcaccaaagatagtgattgtgtaagcctatgtcctcctaaaactttgccatcttgtaataaaggaatttgcttttgtggacatcatgtataacctaatacatgtttgagttataagagaacatttttttttttatatcattaatagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="36985" stop="38194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37285" g_stop="37369" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37370" i_stop="37621" i_length="252">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37622" g_stop="37880" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="344" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E551844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37285" e_stop="37369"/>
          <exon e_start="37622" e_stop="37880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAGGTACCCCCCCCCCCCCCCCACACACACACAAACCAAGAATTTTATATATGTATACATAGAATATGATTCTCTTTTATGAAATTAAAGGGGTTCAGATGAACCCTCTTGTACAGCTAGTTGAAGCCTTTAGCATGTTATTCTAATAAATGTCATGTATTATACACAAATGCGTAGTTTTGTTTGACTTATACATTGAATATTTAATTTCGATAAATATATCTTAATTAATTTTTTCTTTTGGTTTTTTTCTAGGTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</genome_strand>
        <mrna_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAG............................................................................................................................................................................................................................................................GTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552294" ref_strand="+" ref_description="SGN-E552294 [cTSB-3-H18]">
      <seq>atcattatctattgagatatagtatacaaaatggagaagacatcaattgttttgctctcccttattgccttgataattttgttaggttcaccatcgtgtatggcagcaacgtgtaaaacatcaaaagattgtgatcctagaggttgtggaagtcgaggtatgctatgccttaatggagtttgtgtgtgtccctctgaaataaggaagaatggctgcaccaaagatagtgattgtgtaagcctatgtcctcctaaaactttgccatcttgtaataaaggaatttgcttttgtggacatcatgtataacctaatacatgtttgagttataagagaacatttttttttttatatcattaatagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="36985" stop="38194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37285" g_stop="37369" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37370" i_stop="37621" i_length="252">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37622" g_stop="37880" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="344" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E552294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37285" e_stop="37369"/>
          <exon e_start="37622" e_stop="37880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAGGTACCCCCCCCCCCCCCCCACACACACACAAACCAAGAATTTTATATATGTATACATAGAATATGATTCTCTTTTATGAAATTAAAGGGGTTCAGATGAACCCTCTTGTACAGCTAGTTGAAGCCTTTAGCATGTTATTCTAATAAATGTCATGTATTATACACAAATGCGTAGTTTTGTTTGACTTATACATTGAATATTTAATTTCGATAAATATATCTTAATTAATTTTTTCTTTTGGTTTTTTTCTAGGTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</genome_strand>
        <mrna_strand>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAG............................................................................................................................................................................................................................................................GTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545050" ref_strand="+" ref_description="SGN-E545050 [TUS-67-L5](-)">
      <seq>caacaggacgaagaagggattatattccttgctcagaacctggatcaaggctccctcatatgaacgttgaactgttttctaaaccgtcaagcaaggaaatattatctactctagaccttgtatctatagataaggttgagtttatccttataattgcgccattcaaggagtcatactgtctagctcgagctgcactagaggtggccaacaaatttaaactccatttaaaggtttgtgtaatgtggccaaacggaagtattgacggagctggaagaactgaggctgcattgacaccctggaaatcttttgaagaagttgtggaagtgaagaggtcatcggattcaccatcctggtgggacatctgtcaaatgacagacagaggagccatattagtgagacctgatgaacacgttgcttggcgttcaaaatccagaattgcagatcccatcatgacgatgaaaaacattttccacattgttacaggagttgattgcacgtgataacacctttgaagaaatttttacccccatttatgtattgtagtcttgacattcattctctgatatatattagctagattacaaggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42071" stop="38932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41771" g_stop="41677" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41676" i_stop="39728" i_length="1949">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39727" g_stop="39226" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="597" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E545050" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41771" e_stop="41677"/>
          <exon e_start="39727" e_stop="39226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAGGTATGAAATCTTTCAAGGGAACATTGCCTTGGTAGGAGCCAGACTTTGTTAGATCATAGTCTTGTTAGTCATCTCTTCACACGTGTGGAGAAGCCAAATAACTGAATCAAAAAGGAATTTTTTTTAACCTTTAGCCTTCCTAAAAATTACAATATTCGACTTGCAGCCATTTTGTGTTACGACCCGAGAGTAACCCCTGGGCGTAACAACACGTACTTGACCTCCTGGAGGTCTTATACAAGCCCTTAACATTCGTTCATTGCATAAGTATGAAAATTAGTGCGGAATTAGAACTTTTTCTTAATATAACACAAGACTAGAAAGTCATCTTATTTATAAATCATTAATACAAAGTTAGGATACTAAGTCTCATCTTGCCATCTTAGACACGACTTCAATATAATAAGGACACGACCCGTACAATATAAACAGAACATTACTAATCTATTACATGAACTTAAAGAAACTCTTAACATGAAGGTCTTTGAATCATTAAGGACACACCCGAACTTGGGAATAGTAATCCAAGCTCTTCATTATAGGAAAAGTCCTTTAGCCATTGCCGCCTACACTTGGTGTAAAAAGATGAAGAAGAATGCTATTAATAGAAGAATGCATCAAGTATGATAATCATGCAACAACTTGCTTTAAAGAGGACATTTAGTTGGAACCATGCATCATATCATTTTAGTGAAACTCCTTAACCATTTGATACAATAAACACAATTTAGTTCATATACATTATAATAGACATGGATACCATTCACAACAACACATAAAACCATTTATCACATTTAAGACACATTCAATAACTCCAATATATTACCTTGACTTTTTACCTCAACTCCCTTACCTCAAGCAACCTTTAAGTAATACTTAGTGTAATACATGAATAGTGTCTCATTCCACCATTCATACCAAAGTATCACCTTAAGGTCACCAAGGGTGAACATTCATACAACCTTCATTAATCCAACCATATGTATTCTTAAGGACATAGCATATCATGAAACATAACCTTCACATAAGAACCATCACCTAAGACAACCTCAAGTCACACTAGTGCAATGTTCAAGTAGCATCCCGTAATACTATTCACACTAAGTGTTCCTATGAAGTCACCTAGACTAGGCACATCATATTCAATAAGACACAACGCATTCACTTAACATTAGACATAAGACTAACATACTTCATAGACATCATATAAGCACTCATTCATTTATTACATTATAGTCATAACCCATTTAGTCTTTAAGTGCATCACATGAACAATATACAAGTCCATACTCCAAGTAACAACATGATGAAACCATAGTCAATCGGCCAAGACTTTGGCAGTGTTGCAGGTTTAATCGGCGGCCACCATTGATGGACCATCAATGGATTGATGGTCCCATCTTGGTCATCCGTCAATGGTGACCAAGGCTTGTCATTTTGGGGGCTAAGCTCCCACGGCTAACTGTGGAGCCACGCCCCTTTTCTACGGGGCATCAATTGGTTAACAGGGTGTCGTTTGTGGTCGTTGGTCAAGCTGTCTTAACAACTTCTTGGCCAATGTTTGTGTCCTCCTCAAGAATCCTTAGGTTGGTCCTTGGGGAGTCGTACCCGGACGTTTCGACCCTAAACATGACCATCTAGATACTAGGGTCACCTCTAATCATAGTAGACTCGAAACGACACACCAAAACAAGGCAAACATACTAGAACACACTAGCACACAAAAGACTAGTTTGCGGATGTCTTGGTCGTCCTTTGACGTTTGACCTTGAAACTCATTAAACCAACTATTAAAGGTTGTTTCTCACCTTATTAACAAGTTTCTAGCTCTTAAAACTCATGTGAGGCTCTAGTTCATCCTAGTTCATTTTGAGGATCAAAATATTTTATTTCAAGTTTGCATTACTATTCTTTCTGACAGAAATCAGAATACAATCAATCATATGCAGGAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATCATGACGATGAAAAACATTTTCCACATTGTTACAGGAGTTGATTGCACGTGATAACACCTTTGAAGAAATTTTTACCCCCATTTATGTATTGTAGTCTTGACATTCATTCTCTGATATATATTAGCTAGATTACAAGGTTGAAGTACTT</genome_strand>
        <mrna_strand>CAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATCATGACGATGAAAAACATTTTCCACATTGTTACAGGAGTTGATTGCACGTGATAACACCTTTGAAGAAATTTTTACCCCCATTTATGTATTGTAGTCTTGACATTCATTCTCTGATATATATTAGCTAGATTACAAGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308349" ref_strand="+" ref_description="SGN-E308349 [cLEY-25-G19]">
      <seq>ttaagacaaatatttgaagaaggacagagccttcagctccagttccctgctgaggatcttggtttcaggtatcggaaaggagtattggtgtctgaagatgacgttgtggtggatgtgcatgaagcaccaacaggacgaagaagggattatattccttgctcagaacctggatcaaggctccctcatatgaacgttgaactgttttctaaaccgtcaagcaaggaaatattatctactctagaccttgtatctatagataaggttgagtttatccttataattgcgccattcaaggagtcatactgtctagctcgagctgcactagaggtggccaacaaatttaaactccatttaaaggtttgtgtaatgtggccaaacggaagtattgacggagctggaagaactgaggctgcattgacaccctggaaatcttttgaagaagttgtggaagtgaagaggtcatcggattcaccatcctggtgggacatctgtcaaatgacagacagaggagccatattagtgagacctgatgaacacgttgcttggcgttcaaaatccagaattgcagatcccatcatgacgatgaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42426" stop="39058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42126" g_stop="42059" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42058" i_stop="41831" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41830" g_stop="41677" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="222" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41676" i_stop="39728" i_length="1949">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39727" g_stop="39358" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="592" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E308349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42126" e_stop="42059"/>
          <exon e_start="41830" e_stop="41677"/>
          <exon e_start="39727" e_stop="39358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGACAAATATTTGAAGAAGGACAGAGCCTTCAGCTCCAGTTCCCTGCTGAGGATCTTGGTTTCAGGTTGCGTATCTATTCTTTTTTTATCCATCTCATGCAAATTGTTAAATCAGTTTTTTCAATTATTATTGTCTAATTTACGTCTCCTATAAATGCTGGATGCTGTCTCAACTCTGAATAGAACTCCAAAAAAGCCATCTTGGATTACGCCAGATGATTGTTTCTATCTTACCTATCTTGTTGGAAGTTCTTGTTTTCACCAGTACTCTAATTTCGAGATGTTCACATTAGGTATCGGAAAGGAGTATTGGTGTCTGAAGATGACGTTGTGGTGGATGTGCATGAAGCACCAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAGGTATGAAATCTTTCAAGGGAACATTGCCTTGGTAGGAGCCAGACTTTGTTAGATCATAGTCTTGTTAGTCATCTCTTCACACGTGTGGAGAAGCCAAATAACTGAATCAAAAAGGAATTTTTTTTAACCTTTAGCCTTCCTAAAAATTACAATATTCGACTTGCAGCCATTTTGTGTTACGACCCGAGAGTAACCCCTGGGCGTAACAACACGTACTTGACCTCCTGGAGGTCTTATACAAGCCCTTAACATTCGTTCATTGCATAAGTATGAAAATTAGTGCGGAATTAGAACTTTTTCTTAATATAACACAAGACTAGAAAGTCATCTTATTTATAAATCATTAATACAAAGTTAGGATACTAAGTCTCATCTTGCCATCTTAGACACGACTTCAATATAATAAGGACACGACCCGTACAATATAAACAGAACATTACTAATCTATTACATGAACTTAAAGAAACTCTTAACATGAAGGTCTTTGAATCATTAAGGACACACCCGAACTTGGGAATAGTAATCCAAGCTCTTCATTATAGGAAAAGTCCTTTAGCCATTGCCGCCTACACTTGGTGTAAAAAGATGAAGAAGAATGCTATTAATAGAAGAATGCATCAAGTATGATAATCATGCAACAACTTGCTTTAAAGAGGACATTTAGTTGGAACCATGCATCATATCATTTTAGTGAAACTCCTTAACCATTTGATACAATAAACACAATTTAGTTCATATACATTATAATAGACATGGATACCATTCACAACAACACATAAAACCATTTATCACATTTAAGACACATTCAATAACTCCAATATATTACCTTGACTTTTTACCTCAACTCCCTTACCTCAAGCAACCTTTAAGTAATACTTAGTGTAATACATGAATAGTGTCTCATTCCACCATTCATACCAAAGTATCACCTTAAGGTCACCAAGGGTGAACATTCATACAACCTTCATTAATCCAACCATATGTATTCTTAAGGACATAGCATATCATGAAACATAACCTTCACATAAGAACCATCACCTAAGACAACCTCAAGTCACACTAGTGCAATGTTCAAGTAGCATCCCGTAATACTATTCACACTAAGTGTTCCTATGAAGTCACCTAGACTAGGCACATCATATTCAATAAGACACAACGCATTCACTTAACATTAGACATAAGACTAACATACTTCATAGACATCATATAAGCACTCATTCATTTATTACATTATAGTCATAACCCATTTAGTCTTTAAGTGCATCACATGAACAATATACAAGTCCATACTCCAAGTAACAACATGATGAAACCATAGTCAATCGGCCAAGACTTTGGCAGTGTTGCAGGTTTAATCGGCGGCCACCATTGATGGACCATCAATGGATTGATGGTCCCATCTTGGTCATCCGTCAATGGTGACCAAGGCTTGTCATTTTGGGGGCTAAGCTCCCACGGCTAACTGTGGAGCCACGCCCCTTTTCTACGGGGCATCAATTGGTTAACAGGGTGTCGTTTGTGGTCGTTGGTCAAGCTGTCTTAACAACTTCTTGGCCAATGTTTGTGTCCTCCTCAAGAATCCTTAGGTTGGTCCTTGGGGAGTCGTACCCGGACGTTTCGACCCTAAACATGACCATCTAGATACTAGGGTCACCTCTAATCATAGTAGACTCGAAACGACACACCAAAACAAGGCAAACATACTAGAACACACTAGCACACAAAAGACTAGTTTGCGGATGTCTTGGTCGTCCTTTGACGTTTGACCTTGAAACTCATTAAACCAACTATTAAAGGTTGTTTCTCACCTTATTAACAAGTTTCTAGCTCTTAAAACTCATGTGAGGCTCTAGTTCATCCTAGTTCATTTTGAGGATCAAAATATTTTATTTCAAGTTTGCATTACTATTCTTTCTGACAGAAATCAGAATACAATCAATCATATGCAGGAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATCATGACGATGAAAAACA</genome_strand>
        <mrna_strand>TTAAGACAAATATTTGAAGAAGGACAGAGCCTTCAGCTCCAGTTCCCTGCTGAGGATCTTGGTTTCAG....................................................................................................................................................................................................................................GTATCGGAAAGGAGTATTGGTGTCTGAAGATGACGTTGTGGTGGATGTGCATGAAGCACCAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATCATGACGATGAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549143" ref_strand="+" ref_description="SGN-E549143 [TUS-67-L5]">
      <seq>attaagacaaatatttgaagaaggacagagccttcagctccagttccctgctgaggatcttggtttcaggtatcggaaaggagtattggtgtctgaagatgacgttgtggtggatgtgcatgaagcaccaacaggacgaagaagggattatattccttgctcagaacctggatcaaggctccctcatatgaacgttgaactgttttctaaaccgtcaagcaaggaaatattatctactctagaccttgtatctatagataaggttgagtttatccttataattgcgccattcaaggagtcatactgtctagctcgagctgcactagaggtggccaacaaatttaaactccatttaaaggtttgtgtaatgtggccaaacggaagtattgacggagctggaagaactgaggctgcattgacaccctggaaatcttttgaagaagttgtggaagtgaagaggtcatcggattcaccatcctggtgggacatctgtcaaatgacagacagaggagccatactagtgagacctgatgaacacgttgcttggcgtttcaaatccagaattgcagatcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="42427" stop="39074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42127" g_stop="42059" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42058" i_stop="41831" i_length="228">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41830" g_stop="41677" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="223" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41676" i_stop="39728" i_length="1949">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39727" g_stop="39374" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="577" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E549143" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42127" e_stop="42059"/>
          <exon e_start="41830" e_stop="41677"/>
          <exon e_start="39727" e_stop="39374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGACAAATATTTGAAGAAGGACAGAGCCTTCAGCTCCAGTTCCCTGCTGAGGATCTTGGTTTCAGGTTGCGTATCTATTCTTTTTTTATCCATCTCATGCAAATTGTTAAATCAGTTTTTTCAATTATTATTGTCTAATTTACGTCTCCTATAAATGCTGGATGCTGTCTCAACTCTGAATAGAACTCCAAAAAAGCCATCTTGGATTACGCCAGATGATTGTTTCTATCTTACCTATCTTGTTGGAAGTTCTTGTTTTCACCAGTACTCTAATTTCGAGATGTTCACATTAGGTATCGGAAAGGAGTATTGGTGTCTGAAGATGACGTTGTGGTGGATGTGCATGAAGCACCAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAGGTATGAAATCTTTCAAGGGAACATTGCCTTGGTAGGAGCCAGACTTTGTTAGATCATAGTCTTGTTAGTCATCTCTTCACACGTGTGGAGAAGCCAAATAACTGAATCAAAAAGGAATTTTTTTTAACCTTTAGCCTTCCTAAAAATTACAATATTCGACTTGCAGCCATTTTGTGTTACGACCCGAGAGTAACCCCTGGGCGTAACAACACGTACTTGACCTCCTGGAGGTCTTATACAAGCCCTTAACATTCGTTCATTGCATAAGTATGAAAATTAGTGCGGAATTAGAACTTTTTCTTAATATAACACAAGACTAGAAAGTCATCTTATTTATAAATCATTAATACAAAGTTAGGATACTAAGTCTCATCTTGCCATCTTAGACACGACTTCAATATAATAAGGACACGACCCGTACAATATAAACAGAACATTACTAATCTATTACATGAACTTAAAGAAACTCTTAACATGAAGGTCTTTGAATCATTAAGGACACACCCGAACTTGGGAATAGTAATCCAAGCTCTTCATTATAGGAAAAGTCCTTTAGCCATTGCCGCCTACACTTGGTGTAAAAAGATGAAGAAGAATGCTATTAATAGAAGAATGCATCAAGTATGATAATCATGCAACAACTTGCTTTAAAGAGGACATTTAGTTGGAACCATGCATCATATCATTTTAGTGAAACTCCTTAACCATTTGATACAATAAACACAATTTAGTTCATATACATTATAATAGACATGGATACCATTCACAACAACACATAAAACCATTTATCACATTTAAGACACATTCAATAACTCCAATATATTACCTTGACTTTTTACCTCAACTCCCTTACCTCAAGCAACCTTTAAGTAATACTTAGTGTAATACATGAATAGTGTCTCATTCCACCATTCATACCAAAGTATCACCTTAAGGTCACCAAGGGTGAACATTCATACAACCTTCATTAATCCAACCATATGTATTCTTAAGGACATAGCATATCATGAAACATAACCTTCACATAAGAACCATCACCTAAGACAACCTCAAGTCACACTAGTGCAATGTTCAAGTAGCATCCCGTAATACTATTCACACTAAGTGTTCCTATGAAGTCACCTAGACTAGGCACATCATATTCAATAAGACACAACGCATTCACTTAACATTAGACATAAGACTAACATACTTCATAGACATCATATAAGCACTCATTCATTTATTACATTATAGTCATAACCCATTTAGTCTTTAAGTGCATCACATGAACAATATACAAGTCCATACTCCAAGTAACAACATGATGAAACCATAGTCAATCGGCCAAGACTTTGGCAGTGTTGCAGGTTTAATCGGCGGCCACCATTGATGGACCATCAATGGATTGATGGTCCCATCTTGGTCATCCGTCAATGGTGACCAAGGCTTGTCATTTTGGGGGCTAAGCTCCCACGGCTAACTGTGGAGCCACGCCCCTTTTCTACGGGGCATCAATTGGTTAACAGGGTGTCGTTTGTGGTCGTTGGTCAAGCTGTCTTAACAACTTCTTGGCCAATGTTTGTGTCCTCCTCAAGAATCCTTAGGTTGGTCCTTGGGGAGTCGTACCCGGACGTTTCGACCCTAAACATGACCATCTAGATACTAGGGTCACCTCTAATCATAGTAGACTCGAAACGACACACCAAAACAAGGCAAACATACTAGAACACACTAGCACACAAAAGACTAGTTTGCGGATGTCTTGGTCGTCCTTTGACGTTTGACCTTGAAACTCATTAAACCAACTATTAAAGGTTGTTTCTCACCTTATTAACAAGTTTCTAGCTCTTAAAACTCATGTGAGGCTCTAGTTCATCCTAGTTCATTTTGAGGATCAAAATATTTTATTTCAAGTTTGCATTACTATTCTTTCTGACAGAAATCAGAATACAATCAATCATATGCAGGAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATC</genome_strand>
        <mrna_strand>ATTAAGACAAATATTTGAAGAAGGACAGAGCCTTCAGCTCCAGTTCCCTGCTGAGGATCTTGGTTTCAG....................................................................................................................................................................................................................................GTATCGGAAAGGAGTATTGGTGTCTGAAGATGACGTTGTGGTGGATGTGCATGAAGCACCAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATACTAGTGAGACCTGATGAACACGTTGCTTGGCGTTTCAAATCCAGAATTGCAGATCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716220" ref_strand="+" ref_description="SGN-E716220 [FB16BG09]">
      <seq>cactgatgaccgataagggtattagaaaagatccgggttgtagtttaattgaaattaatggggttttccatgagtttttcgctggagatacatctcatttgcatactagagaaatttatgagtttttggatgttatagacaaaagactcctagcagcagggtatgttcctgatctgtcacacgcatcaaccgttgatgaacttgataatgggaagagacagtcgcttaaactgcacagtgagagacttgccattgcttatggacttctgaaactaaaaccaggtactcctttacgcattttcaagaatttgcgcatatgcagtgattgtcacaatgtaaccaaattaatttcgaaagtctttgatgttgaaattattgttagagatcgtgttcggtttcatcactttaggaatgggtcctgtacctgcaaagattattggtgaacataatgtatactaacattatatgaatacaattgtcaattcatatgcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="49395" stop="50490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49695" g_stop="50179" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="504"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E716220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49695" e_stop="50179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGATGACCGATAAGGGTATTAGAAAAGATCCGGGTTGTAGTTTAATTGAAATTAATGGGGTTTTCCATGAGTTTTTCGCTGGAGATACATCTCATTTGCATACTAGAGAAATTTATGAGTTTTTGGATGTTATAGACAAAAGACTCCTAGCAGCAGGGTATGTTCCTGATCTGTCACACGCATCAACCGTTGATGAACTTGATAATGGGAAGAGACAGTCGCTTAAACTGCACAGTGAGAGACTTGCCATTGCTTATGGACTTCTGAAACTAAAACCAGGTACTCCTTTACGCATTTTCAAGAATTTGCGCATATGCAGTGATTGTCACAATGTAACCAAATTAATTTCGAAAGTCTTTGATGTTGAAATTATTGTTAGAGATCGTGTTCGGTTTCATCACTTTAGGAATGGGTCCTGTACCTGCAAAGATTATTGGTGAACATAATGTATACTAACATTATATGAATACAATTGTCAATTC</genome_strand>
        <mrna_strand>CACTGATGACCGATAAGGGTATTAGAAAAGATCCGGGTTGTAGTTTAATTGAAATTAATGGGGTTTTCCATGAGTTTTTCGCTGGAGATACATCTCATTTGCATACTAGAGAAATTTATGAGTTTTTGGATGTTATAGACAAAAGACTCCTAGCAGCAGGGTATGTTCCTGATCTGTCACACGCATCAACCGTTGATGAACTTGATAATGGGAAGAGACAGTCGCTTAAACTGCACAGTGAGAGACTTGCCATTGCTTATGGACTTCTGAAACTAAAACCAGGTACTCCTTTACGCATTTTCAAGAATTTGCGCATATGCAGTGATTGTCACAATGTAACCAAATTAATTTCGAAAGTCTTTGATGTTGAAATTATTGTTAGAGATCGTGTTCGGTTTCATCACTTTAGGAATGGGTCCTGTACCTGCAAAGATTATTGGTGAACATAATGTATACTAACATTATATGAATACAATTGTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231326" ref_strand="+" ref_description="SGN-E231326 [cLED-10-J11]">
      <seq>tagatggaaggcttatatattatcacgttacggatgaatttggagaaattgacgaaggagccgagggactttgcataacttttaagggaaatagtgttgaggatctaaagaagagattggaggaggaaactgggctcgaggatattactgtgtgtactcggagtgctttgaatgggaagctttatcctctccgtttgcagcttcctcccaacaacgcaaatatgaacgttattattttgccatcttcatctaaagaagctagtgatattgcataaccaagaaggccattgtagccctactcgtggagcacttatcgcggattgttgcagtagatggatttttgtatcagtaaaatcgcgtaaacgtgtatctccattgtttattaagcatttgtatataaggttttgagtattcagagagatatacacaatatctgctcttgatgttaatatcatcatcatacatatacacttccacagaataattgaaaattgaaatctggtggagtttttagttcatatttacattctatgtgacatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="60815" stop="59110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60515" g_stop="60261" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60260" i_stop="59698" i_length="563">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59697" g_stop="59410" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="543" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E231326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60515" e_stop="60261"/>
          <exon e_start="59697" e_stop="59410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAGGTGAGCCTTTTACTCTTCTACTTGGTCTTAAAACTTTGGTTTCATTTCGTGAAAGTTTGAAATTTTAGATCCATCGTTCTGTTTGAGAATTTTGTTTCATAACGAACTTATAAACGTTTATAGCAATCAAAATAATACTATTGATGCTATTGACCCTTCACCTTCCATTTGGAATCAACCAAAATCACTAATGTCTCGTTGAATCATTCACGCCTCCGTTCTTGAATAAAACATCATCAATGCCAGCCCTTGATTGCCTTCTAACCAACATAACATAAACCAATTAAGAAACTTACTCAATGCTCGTCTTAAGCTTACTTTGTTGCATCATTTTGGCTGTCAATTGATGGCTTGAATGCTCGTTCGAGGGTATCAATTGATGACACAAGTGCTTAGTTTGAGAGTACTTCTTGTGTTCTGTAAGCCACGCGAGCTCATCATTCTTACCGCGTTACATAACTGTAGCAGTTGTTGAGTCCCATACACAATGAAGCTTATCTTACTATACTTTGAATTCGTCTTCATTGTTAACGTGTTAATCTTCGTGTTATGGCATGTTTCAGAAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGAGTTTTTAGTTCATATTTACATTCTATGTGACATTTGG</genome_strand>
        <mrna_strand>TAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGAGTTTTTAGTTCATATTTACATTCTATGTGACATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215496" ref_strand="+" ref_description="SGN-E215496 [cLEL-20-G20](-)">
      <seq>gcttcctcccaacaacgcaaatatgaacgttattattttgccatcttcatctaaagaagctagtgatattgcataaccaagaaggccattgtagccctactcgtggagcacttatcgcggattgttgcagtagatggatttttgtatcagtaaaatcgcgtaaacgtgtatctccattgtttattaagcatttgtatataaggttttgagtattcagagagatatacacaatatctgctcttgatgttaatatcatcatcatacatatacacttccacagaataattgaaaattgaaatctggtggagtttttagttcataaaaaaacccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="60616" stop="59133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60316" g_stop="60261" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60260" i_stop="59698" i_length="563">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59697" g_stop="59434" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="320" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="345"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E215496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60316" e_stop="60261"/>
          <exon e_start="59697" e_stop="59434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAGGTGAGCCTTTTACTCTTCTACTTGGTCTTAAAACTTTGGTTTCATTTCGTGAAAGTTTGAAATTTTAGATCCATCGTTCTGTTTGAGAATTTTGTTTCATAACGAACTTATAAACGTTTATAGCAATCAAAATAATACTATTGATGCTATTGACCCTTCACCTTCCATTTGGAATCAACCAAAATCACTAATGTCTCGTTGAATCATTCACGCCTCCGTTCTTGAATAAAACATCATCAATGCCAGCCCTTGATTGCCTTCTAACCAACATAACATAAACCAATTAAGAAACTTACTCAATGCTCGTCTTAAGCTTACTTTGTTGCATCATTTTGGCTGTCAATTGATGGCTTGAATGCTCGTTCGAGGGTATCAATTGATGACACAAGTGCTTAGTTTGAGAGTACTTCTTGTGTTCTGTAAGCCACGCGAGCTCATCATTCTTACCGCGTTACATAACTGTAGCAGTTGTTGAGTCCCATACACAATGAAGCTTATCTTACTATACTTTGAATTCGTCTTCATTGTTAACGTGTTAATCTTCGTGTTATGGCATGTTTCAGAAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGAGTTTTTAGTTCAT</genome_strand>
        <mrna_strand>GCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGAGTTTTTAGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745667" ref_strand="+" ref_description="SGN-E745667 [GI|47105203]">
      <seq>ggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtaacacatgataatccatatagtggtagtacacaaaattggattttgtggaacgttgaacctattgatgtgcccgaaaatgaatcgttgacggaatatttaactatggtttcaagtttttcatcgatttctgatgagcttttaagcctggatttaggatctccgacttctgtacattcaagtttttcattctcacctaggagggctaagatttctttaccaaaaagatcagcaatggagctatttcacaaagcaaaagctgttcgtttacagagtcaccatgagaagtacttaacagctgaagaagatgaagaatcagtgactcaagatcgtaacggagcatcaaaaaacgcgaaatggacagttgaatttgttgaaaaaaccgaaaatgttattcgattgaagagttgttatgggaaatatttaacagcttcgaatcagccatttcttctgggtatgactggtagaaaagttcttcaaactttgcctaatcgacttgattcttcaattgaatgggaacccattagagaaggacatcaagttaagctgaggacgagatatgggcaatttttgaggggaaatgggggtcttcctccatggagaaattctgttactcatgatattcctcataggacgaaaactcaagattgggttctttgggatgttcatgttgttgaaattttggcgcattcgacggcggagacggtggcggagacgacggtggtgggtggtaattctgattcgtttgcttctgaatcgagttctgctactactactggttcatcaaaatcttacagcttttcgagacaagagtcaagtgattcattgattagttcaccgcctaagttggtagatggaaggcttatatattatcacgttacggatgaatttggagaaattgacgaaggagccgagggactttgcataacttttaagggaaatagtgttgaggatctaaagaagagattggaggaggaaactgggctcgaggatattactgtgtgtactcggagtgctttgaatgggaagctttatcctctccgtttgcagcttcctcccaacaacgcaaatatgaacgttattattttgccatcttcatctaaagaagctagtgatattgcataaccaagaaggccattgtagccctactcgtggagcacttatcgcggattgttgcagtagatggatttttgtatcagtaaaatcgcgtaaacgtgtatctccattgtttattaagcatttgtatataaggttttgagtattcagagagatatacacaatatctgctcttgatgttaatatcatcatcatacatatacacttccacagaataattgaaaattgaaatctggtggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="65019" stop="59147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64719" g_stop="64432" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62321" g_stop="61719" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="891" r_length="603" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60552" g_stop="60261" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="1183" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60260" i_stop="59698" i_length="563">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59697" g_stop="59447" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1184" r_stop="1434" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1435" polyA_stop="1452"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E745667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1434</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64719" e_stop="64432"/>
          <exon e_start="62321" e_stop="61719"/>
          <exon e_start="60552" e_stop="60261"/>
          <exon e_start="59697" e_stop="59447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAGGTATGTTATTTCGTTATGTCAACTTATTATTTTTTTTTTGCGTTTGTATTGCCTTATTGTTTTATTAGGTCATTATTGCGATTTATAATTATTAAATGAGTAAAATGTCTGATTAATTTGAATTCATATAGAAGATCCATTAAATGAAAGACTTAGTATTCGAATCTTGTAATTAAAAATTAAAGATATTATATTGATCCACCATGATTCTAATAATAATTAACATAATTACTAGCTTGTCTTTTGCGTTTAGTGCTAGATCTTTAGATTTATTAGCTAAATGGGAATATGACTAATTACTAATTAGGAAAATTAATACTTCTTTGTAGGAGTTTATGTTACATTTCTATAAACCATAATTAGGTGGAAGTATACTTCACTACGTAACAACTAACAACAAAAAAGGAAGTTGAGATAAAGAAGTAATTAAAAGGATATAATTATGATCGCTAACTCAACTAAAAGAGTTGAGAAAAAGTGGTTAATTAAGTAAAATATCACCATTTTAGTATATTTGGTTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAACTTAATTTTTCGATAATAACAGAAATTGGAGAAAAAAAACAATTTCTTCTTTGAAGAAAGTAGTTAATTAAGTAAATATCACCATTTTAGTATATTTGATTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAGCTTAATTTTTCTATAGTAACAGAAGTTGTTTTTTAGAAGTTGAAGAAAAAAAAACAATTTCTTCTTTTGAAGTATTTTTGAGATGATTGTCTGATGCATATTGATGTATTAATATTAAAAAAAAATAAGTTTTTAACTGATTAGTTAAACATAACCTGTAATTCTATTCGAAAAATACTTTTGAATAAAAGAAAAAATAAATTTTCGAAGTTTTACCCAAATTAACTATTAGCTTGAATGTAATTGAGTCCTATAATTTTGTTTAGAAATTGGCTATAGCTTGTTTATTATGTCTTTTGGATAAAAACTTTTTGAAATACATTTTTGTAGAAGGATACAAAATTGACCTACTTTTGATTATTGCCCCATCATTTTTGATATTATTATATTTGAGAAACCTTAGGCTATAATAAAGAATATTCATAACATACACTCCTACTTTTATGAGATAATTAATTACCCTCTTTATCCTTTTCTTGTTCTATAAACCAACAATCTATATTTTAATGATTCTATTAGAATGAGTATAAAAATAAATCAGTCGTAATGAAATGATTGAGATTCTTATCCTATTAATTAAGAATCTCAAATTTCTGTATAATTAAAATAAATATTTTTTTAATATAGGTCAATTTTTTAAATTCATATTGAAATAATTTTAAATATCGAGAATCAAAAAAATTTGACCACAAAGTCTCACAAGATAAATAGAGATGAGACAAACGTTGATCCAAAAAGATTATACAAAGGAAGTAACCTAGAACCTTCATAAAATTAAAAATGTTTTTTTTTGTTTCGATTATTAAAGCTTACTTTATATTAATAATATCGTAAACTTTCTTCTTCGTCTCATTCTAGTCTCATTCTAGAGCCAGAATCAAAAAAAAATTCTTTCAAATTTTAAGTTATATATATGAAAAGTATAAATTTTGTGTTACTCTATCGATATAATTAGATTCTTTTGTGAGGACAATTTACTATTTTTGCACCACCAATCAATTAACCATATAAAAAAAATAAAGTAACCATAATTATCTTTTTAAACAAACTTAACCAAATATGAAAGTGTATTTTTTTTTTCCATTCCTTAATGATCTAATTTTGACCATGTCTAAAAATAGAAAAACTTCAATTAGTAAAAAAAAAAAAAACACATATCTTCACACGTGTCAACCTATATTTTCTCACGTGTCAAATATTTAACGCGCTTTCCTGCGTCTCCCCCATCAAACATGGCTGTCATCATCATAACAAAGAAAAAAACTTCTTCATTATTTCTTCAATTACTATAAAAAATACTCAAGAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAGGTATTACTTCAATTTTTACATTCAATTTATATAAAGTTTGAAATTTGACCTTATGAGGTTCGTTGGGAATCGTAATAGCTCAGTTAGTTTGGTATTTGACTTTGGCCTTATGGGGTTCGTTGGGAATTGCAGTAGCTCAGTTAGTTGGTAATTGAACTTTGACCTTATGGGGTTGGTATTTGAACTTTGACCTTGTGGGTTCGTTGGGAATCGTAATAGCTGAGTTGGTTGGTATTTGAACTTTGACCTTATGGGGTTCATTGGAAATCGTATTAGCTCAGTTAGTTGGTATTTGAACTTTGACCTTATGAGGTTCGTTCGGAATTGTAGTAGCTCAGTTAGTTGGTATTTGAACTTTGGCCTTATGGGGTTAGTTGGGAATCGTAGTAGCTCAGTTAGTTGGTATATGAACTTTTGACCTTATGGGGTTCGTTGGGAATCGCAGTAGCTCTGATAGTTGGTATTTTAACTTTGACCTTGTTGGTGAGGGTTTGATTAAGTACATTGTATTCTCCTCTTCATTTCGGGTTATTTGTGTCCCAATTAAGGAAAAAAAACATTTTTCAATTAGCAAATTGGTTTGTTGTTGATATGGACTTTAAGGGGGTTGGTTTGATCCATAATTCAGGATAGAAGTTGGGATTACGTTGTTTGTTGTTTGGTTATGAGGAGTAGCTACTCCCTCCATCTGTCCCAATTTACTAGATGTAGTTTGACTCAACGCAGAGTTTAAGAAGAAAAGAAAGACTTTTGAAAATTATGATTTTAAGTAAGTGTTTGTGTGGCTATGGATCATCTTATTAAGGATGAATGAAATGAATATTTTGAAGTTAAGTTGTTACTGAATAAAGAACTATGTTGTTTTTTTTGGAATTAATATAAAATTAGGCTCGATAGCAATTTGGTTTGGAGCCTTGTTATGGTTGTGGACAAATACGAGATCATTTGTTATATGACTTGGTCTCGTATTGTATTCGAGTGTGTTTACCCTTTTGGCTTATGACCATTAGGAGTGTTCTTTTAACATATTGGTGTTCGAGTCAACTTATATTATCACTTGCTATAATCAATAGATAGAAGTGTCGGTTGAACTTGTTAATTTGGAATCGGAATTCAATAATTATTATGTTATGATACTCAATTATCTTTTTTCTTTCTTTTGGCAGTCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAGGTGAGCCTTTTACTCTTCTACTTGGTCTTAAAACTTTGGTTTCATTTCGTGAAAGTTTGAAATTTTAGATCCATCGTTCTGTTTGAGAATTTTGTTTCATAACGAACTTATAAACGTTTATAGCAATCAAAATAATACTATTGATGCTATTGACCCTTCACCTTCCATTTGGAATCAACCAAAATCACTAATGTCTCGTTGAATCATTCACGCCTCCGTTCTTGAATAAAACATCATCAATGCCAGCCCTTGATTGCCTTCTAACCAACATAACATAAACCAATTAAGAAACTTACTCAATGCTCGTCTTAAGCTTACTTTGTTGCATCATTTTGGCTGTCAATTGATGGCTTGAATGCTCGTTCGAGGGTATCAATTGATGACACAAGTGCTTAGTTTGAGAGTACTTCTTGTGTTCTGTAAGCCACGCGAGCTCATCATTCTTACCGCGTTACATAACTGTAGCAGTTGTTGAGTCCCATACACAATGAAGCTTATCTTACTATACTTTGAATTCGTCTTCATTGTTAACGTGTTAATCTTCGTGTTATGGCATGTTTCAGAAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGA</genome_strand>
        <mrna_strand>GGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236149" ref_strand="-" ref_description="SGN-E236149 [cLED-16-F20]">
      <seq>cgcaaatatgaacgttattattttgccatcttcatctaaagctagtgatattgcataaccaagaaggccattgtagccctactcgtggagcacttatcgcggattgttgcagtagatggatttttgtatcagtaaaatcgcgtaaacgtgtatctccattgtttattaagcatttgtatataaggttttgagtattcagagagatatacacaatatctgctcttgatgttaatatcatcatcatacataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="60601" stop="59183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60301" g_stop="60261" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60260" i_stop="59695" i_length="566">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59694" g_stop="59488" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="248" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="267"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E236149" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60301" e_stop="60261"/>
          <exon e_start="59694" e_stop="59488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAGGTGAGCCTTTTACTCTTCTACTTGGTCTTAAAACTTTGGTTTCATTTCGTGAAAGTTTGAAATTTTAGATCCATCGTTCTGTTTGAGAATTTTGTTTCATAACGAACTTATAAACGTTTATAGCAATCAAAATAATACTATTGATGCTATTGACCCTTCACCTTCCATTTGGAATCAACCAAAATCACTAATGTCTCGTTGAATCATTCACGCCTCCGTTCTTGAATAAAACATCATCAATGCCAGCCCTTGATTGCCTTCTAACCAACATAACATAAACCAATTAAGAAACTTACTCAATGCTCGTCTTAAGCTTACTTTGTTGCATCATTTTGGCTGTCAATTGATGGCTTGAATGCTCGTTCGAGGGTATCAATTGATGACACAAGTGCTTAGTTTGAGAGTACTTCTTGTGTTCTGTAAGCCACGCGAGCTCATCATTCTTACCGCGTTACATAACTGTAGCAGTTGTTGAGTCCCATACACAATGAAGCTTATCTTACTATACTTTGAATTCGTCTTCATTGTTAACGTGTTAATCTTCGTGTTATGGCATGTTTCAGAAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACAT</genome_strand>
        <mrna_strand>CGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694846" ref_strand="+" ref_description="SGN-E694846 [LH_Ea04P20](-)">
      <seq>cggagacggtggcggagacgacggtggtgggtggtaattctgattcgtttgcttctgaatcgagttctgctactactactggttcatcaaaatcttacagcttttcgagacaagagtcaagtgattcattgattagttccccccctaagttggtagatggaaggcttatatattatccccttccggatgaatttggagaaattgacgaaggagccgagggactttgcataacttttaagggaaatagtgttgaggatttaaagaagagattggaggaggaaactgggctcgaggatattactgtgtgtactcggagtgctttgaatgggaagctttatcctttccgtttgcagcttcctcccaacaacgcaaatatgaacgttattattttgccattttcatttaaagctagtgatattgcataaccaagaagggccattgtagccctacttgtggagcccttatcgcggattgttgcagtagatggatttttgtatcagtaaaattgcgtaaacgtgtatttccattgtttattaagcctttgtatataaggttttgagtattcagagagatatacccaatatttgcttttgatgttaatatcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="62134" stop="59193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61834" g_stop="61719" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60552" g_stop="60261" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="408" r_length="292" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60260" i_stop="59695" i_length="566">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.132" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59694" g_stop="59493" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="611" r_length="203" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E694846" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61834" e_stop="61719"/>
          <exon e_start="60552" e_stop="60261"/>
          <exon e_start="59694" e_stop="59493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAGGTATTACTTCAATTTTTACATTCAATTTATATAAAGTTTGAAATTTGACCTTATGAGGTTCGTTGGGAATCGTAATAGCTCAGTTAGTTTGGTATTTGACTTTGGCCTTATGGGGTTCGTTGGGAATTGCAGTAGCTCAGTTAGTTGGTAATTGAACTTTGACCTTATGGGGTTGGTATTTGAACTTTGACCTTGTGGGTTCGTTGGGAATCGTAATAGCTGAGTTGGTTGGTATTTGAACTTTGACCTTATGGGGTTCATTGGAAATCGTATTAGCTCAGTTAGTTGGTATTTGAACTTTGACCTTATGAGGTTCGTTCGGAATTGTAGTAGCTCAGTTAGTTGGTATTTGAACTTTGGCCTTATGGGGTTAGTTGGGAATCGTAGTAGCTCAGTTAGTTGGTATATGAACTTTTGACCTTATGGGGTTCGTTGGGAATCGCAGTAGCTCTGATAGTTGGTATTTTAACTTTGACCTTGTTGGTGAGGGTTTGATTAAGTACATTGTATTCTCCTCTTCATTTCGGGTTATTTGTGTCCCAATTAAGGAAAAAAAACATTTTTCAATTAGCAAATTGGTTTGTTGTTGATATGGACTTTAAGGGGGTTGGTTTGATCCATAATTCAGGATAGAAGTTGGGATTACGTTGTTTGTTGTTTGGTTATGAGGAGTAGCTACTCCCTCCATCTGTCCCAATTTACTAGATGTAGTTTGACTCAACGCAGAGTTTAAGAAGAAAAGAAAGACTTTTGAAAATTATGATTTTAAGTAAGTGTTTGTGTGGCTATGGATCATCTTATTAAGGATGAATGAAATGAATATTTTGAAGTTAAGTTGTTACTGAATAAAGAACTATGTTGTTTTTTTTGGAATTAATATAAAATTAGGCTCGATAGCAATTTGGTTTGGAGCCTTGTTATGGTTGTGGACAAATACGAGATCATTTGTTATATGACTTGGTCTCGTATTGTATTCGAGTGTGTTTACCCTTTTGGCTTATGACCATTAGGAGTGTTCTTTTAACATATTGGTGTTCGAGTCAACTTATATTATCACTTGCTATAATCAATAGATAGAAGTGTCGGTTGAACTTGTTAATTTGGAATCGGAATTCAATAATTATTATGTTATGATACTCAATTATCTTTTTTCTTTCTTTTGGCAGTCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAGGTGAGCCTTTTACTCTTCTACTTGGTCTTAAAACTTTGGTTTCATTTCGTGAAAGTTTGAAATTTTAGATCCATCGTTCTGTTTGAGAATTTTGTTTCATAACGAACTTATAAACGTTTATAGCAATCAAAATAATACTATTGATGCTATTGACCCTTCACCTTCCATTTGGAATCAACCAAAATCACTAATGTCTCGTTGAATCATTCACGCCTCCGTTCTTGAATAAAACATCATCAATGCCAGCCCTTGATTGCCTTCTAACCAACATAACATAAACCAATTAAGAAACTTACTCAATGCTCGTCTTAAGCTTACTTTGTTGCATCATTTTGGCTGTCAATTGATGGCTTGAATGCTCGTTCGAGGGTATCAATTGATGACACAAGTGCTTAGTTTGAGAGTACTTCTTGTGTTCTGTAAGCCACGCGAGCTCATCATTCTTACCGCGTTACATAACTGTAGCAGTTGTTGAGTCCCATACACAATGAAGCTTATCTTACTATACTTTGAATTCGTCTTCATTGTTAACGTGTTAATCTTCGTGTTATGGCATGTTTCAGAAGCTAGTGATATTGCATAACCAAGAA-GGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCA</genome_strand>
        <mrna_strand>CGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGATTCATTGATTAGTTCCCCCCCTAAGTTGGTAGATGGAAGGCTTATATATTATCCCCTTCCGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATTTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTTTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATTTTCATTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGATATTGCATAACCAAGAAGGGCCATTGTAGCCCTACTTGTGGAGCCCTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATTGCGTAAACGTGTATTTCCATTGTTTATTAAGCCTTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACCCAATATTTGCTTTTGATGTTAATATCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231535" ref_strand="+" ref_description="SGN-E231535 [cLED-4-J5]">
      <seq>aaagttcttcaaactttgcctaatcgacttgattcttcaattgaatgggaacccattagagaaggacatcaagttaagctgaggacgagatatgggcaatttttgaggggaaatgggggtcttcctccatggagaaattctgttactcatgatattcctcataggacgaaaactcaagattgggttctttgggatgttcatgttgttgaaattttggcgcattcgacggcggagacggtggcggagacgacggtggtgggtggtaattctgattcgtttgcttctgaatcgagttctgctactactactggttcatcaaaatcttacagcttttcgagacaagagtcaagtgattcattgattagttcaccgcctaagttggtagatggaaggcttatatattatcacgttacggatgaatttggagaaattgacgaaggagccgagggactttgcataacttttaagggaaatagtgttgaggatctaaagaagagattggaggaggaaactgggctcgaggatattactgtgtgtactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="62363" stop="60057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62063" g_stop="61719" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60552" g_stop="60357" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="541" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E231535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62063" e_stop="61719"/>
          <exon e_start="60552" e_stop="60357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAGGTATTACTTCAATTTTTACATTCAATTTATATAAAGTTTGAAATTTGACCTTATGAGGTTCGTTGGGAATCGTAATAGCTCAGTTAGTTTGGTATTTGACTTTGGCCTTATGGGGTTCGTTGGGAATTGCAGTAGCTCAGTTAGTTGGTAATTGAACTTTGACCTTATGGGGTTGGTATTTGAACTTTGACCTTGTGGGTTCGTTGGGAATCGTAATAGCTGAGTTGGTTGGTATTTGAACTTTGACCTTATGGGGTTCATTGGAAATCGTATTAGCTCAGTTAGTTGGTATTTGAACTTTGACCTTATGAGGTTCGTTCGGAATTGTAGTAGCTCAGTTAGTTGGTATTTGAACTTTGGCCTTATGGGGTTAGTTGGGAATCGTAGTAGCTCAGTTAGTTGGTATATGAACTTTTGACCTTATGGGGTTCGTTGGGAATCGCAGTAGCTCTGATAGTTGGTATTTTAACTTTGACCTTGTTGGTGAGGGTTTGATTAAGTACATTGTATTCTCCTCTTCATTTCGGGTTATTTGTGTCCCAATTAAGGAAAAAAAACATTTTTCAATTAGCAAATTGGTTTGTTGTTGATATGGACTTTAAGGGGGTTGGTTTGATCCATAATTCAGGATAGAAGTTGGGATTACGTTGTTTGTTGTTTGGTTATGAGGAGTAGCTACTCCCTCCATCTGTCCCAATTTACTAGATGTAGTTTGACTCAACGCAGAGTTTAAGAAGAAAAGAAAGACTTTTGAAAATTATGATTTTAAGTAAGTGTTTGTGTGGCTATGGATCATCTTATTAAGGATGAATGAAATGAATATTTTGAAGTTAAGTTGTTACTGAATAAAGAACTATGTTGTTTTTTTTGGAATTAATATAAAATTAGGCTCGATAGCAATTTGGTTTGGAGCCTTGTTATGGTTGTGGACAAATACGAGATCATTTGTTATATGACTTGGTCTCGTATTGTATTCGAGTGTGTTTACCCTTTTGGCTTATGACCATTAGGAGTGTTCTTTTAACATATTGGTGTTCGAGTCAACTTATATTATCACTTGCTATAATCAATAGATAGAAGTGTCGGTTGAACTTGTTAATTTGGAATCGGAATTCAATAATTATTATGTTATGATACTCAATTATCTTTTTTCTTTCTTTTGGCAGTCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTC</genome_strand>
        <mrna_strand>AAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274853" ref_strand="+" ref_description="SGN-E274853 [cLEN-13-J6]">
      <seq>catcaaaaaacgcgaaatggacagttgaatttgttgaaaaaaccgaaaatgttattcgattgaagagttgttatgggaaatatttaacagcttcgaatcagccatttcttctgggtatgactggtagaaaagttcttcaaactttgcctaatcgacttgattcttcaattgaatgggaacccattagagaaggacatcaagttaagctgaggacgagatatgggcaatttttgaggggaaatgggggtcttcctccatggagaaattctgttactcatgatattcctcataggacgaaaactcaagattgggttctttgggatgttcatgttgttgaaattttggcgcattcgacggcggagacggtggcggagacgacggtggtgggtggtaattctgattcgtttgcttctgaatcgagttctgctactactactggttcatcaaaatcttacagcttttcgagacaagagtcaagtgattcattgattagttcaccgcctaagttggtagatggaaggcttatatattatcacgttacggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="62491" stop="60179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62191" g_stop="61719" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60552" g_stop="60479" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="547" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E274853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62191" e_stop="61719"/>
          <exon e_start="60552" e_stop="60479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAGGTATTACTTCAATTTTTACATTCAATTTATATAAAGTTTGAAATTTGACCTTATGAGGTTCGTTGGGAATCGTAATAGCTCAGTTAGTTTGGTATTTGACTTTGGCCTTATGGGGTTCGTTGGGAATTGCAGTAGCTCAGTTAGTTGGTAATTGAACTTTGACCTTATGGGGTTGGTATTTGAACTTTGACCTTGTGGGTTCGTTGGGAATCGTAATAGCTGAGTTGGTTGGTATTTGAACTTTGACCTTATGGGGTTCATTGGAAATCGTATTAGCTCAGTTAGTTGGTATTTGAACTTTGACCTTATGAGGTTCGTTCGGAATTGTAGTAGCTCAGTTAGTTGGTATTTGAACTTTGGCCTTATGGGGTTAGTTGGGAATCGTAGTAGCTCAGTTAGTTGGTATATGAACTTTTGACCTTATGGGGTTCGTTGGGAATCGCAGTAGCTCTGATAGTTGGTATTTTAACTTTGACCTTGTTGGTGAGGGTTTGATTAAGTACATTGTATTCTCCTCTTCATTTCGGGTTATTTGTGTCCCAATTAAGGAAAAAAAACATTTTTCAATTAGCAAATTGGTTTGTTGTTGATATGGACTTTAAGGGGGTTGGTTTGATCCATAATTCAGGATAGAAGTTGGGATTACGTTGTTTGTTGTTTGGTTATGAGGAGTAGCTACTCCCTCCATCTGTCCCAATTTACTAGATGTAGTTTGACTCAACGCAGAGTTTAAGAAGAAAAGAAAGACTTTTGAAAATTATGATTTTAAGTAAGTGTTTGTGTGGCTATGGATCATCTTATTAAGGATGAATGAAATGAATATTTTGAAGTTAAGTTGTTACTGAATAAAGAACTATGTTGTTTTTTTTGGAATTAATATAAAATTAGGCTCGATAGCAATTTGGTTTGGAGCCTTGTTATGGTTGTGGACAAATACGAGATCATTTGTTATATGACTTGGTCTCGTATTGTATTCGAGTGTGTTTACCCTTTTGGCTTATGACCATTAGGAGTGTTCTTTTAACATATTGGTGTTCGAGTCAACTTATATTATCACTTGCTATAATCAATAGATAGAAGTGTCGGTTGAACTTGTTAATTTGGAATCGGAATTCAATAATTATTATGTTATGATACTCAATTATCTTTTTTCTTTCTTTTGGCAGTCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGA</genome_strand>
        <mrna_strand>CATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276745" ref_strand="+" ref_description="SGN-E276745 [cLEN-14-J6]">
      <seq>cgtaacggagcatcaaaaaacgcgaaatggacagttgaatttgttgaaaaaaccgaaaatgttattcgattgaagagttgttatgggaaatatttaacagcttcgaatcagccatttcttctgggtatgactggtagaaaagttcttcaaactttgcctaatcgacttgattcttcaattgaatgggaacccattagagaaggacatcaagttaagctgaggacgagatatgggcaatttttgaggggaaatgggggtcttcctccatggagaaattctgttactcatgatattcctcataggacgaaaactcaagattgggttctttgggatgttcatgttgttgaaattttggcgcattcgacggcggagacggtggcggagacgacggtggtgggtggtaattctgattcgtttgcttctgaatcgagttctgctactactactggttcatcaaaatcttacagcttttcgagacaagagtcaagtgattcattgattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="62501" stop="60233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62201" g_stop="61719" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60552" g_stop="60533" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="503" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E276745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62201" e_stop="61719"/>
          <exon e_start="60552" e_stop="60533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAGGTATTACTTCAATTTTTACATTCAATTTATATAAAGTTTGAAATTTGACCTTATGAGGTTCGTTGGGAATCGTAATAGCTCAGTTAGTTTGGTATTTGACTTTGGCCTTATGGGGTTCGTTGGGAATTGCAGTAGCTCAGTTAGTTGGTAATTGAACTTTGACCTTATGGGGTTGGTATTTGAACTTTGACCTTGTGGGTTCGTTGGGAATCGTAATAGCTGAGTTGGTTGGTATTTGAACTTTGACCTTATGGGGTTCATTGGAAATCGTATTAGCTCAGTTAGTTGGTATTTGAACTTTGACCTTATGAGGTTCGTTCGGAATTGTAGTAGCTCAGTTAGTTGGTATTTGAACTTTGGCCTTATGGGGTTAGTTGGGAATCGTAGTAGCTCAGTTAGTTGGTATATGAACTTTTGACCTTATGGGGTTCGTTGGGAATCGCAGTAGCTCTGATAGTTGGTATTTTAACTTTGACCTTGTTGGTGAGGGTTTGATTAAGTACATTGTATTCTCCTCTTCATTTCGGGTTATTTGTGTCCCAATTAAGGAAAAAAAACATTTTTCAATTAGCAAATTGGTTTGTTGTTGATATGGACTTTAAGGGGGTTGGTTTGATCCATAATTCAGGATAGAAGTTGGGATTACGTTGTTTGTTGTTTGGTTATGAGGAGTAGCTACTCCCTCCATCTGTCCCAATTTACTAGATGTAGTTTGACTCAACGCAGAGTTTAAGAAGAAAAGAAAGACTTTTGAAAATTATGATTTTAAGTAAGTGTTTGTGTGGCTATGGATCATCTTATTAAGGATGAATGAAATGAATATTTTGAAGTTAAGTTGTTACTGAATAAAGAACTATGTTGTTTTTTTTGGAATTAATATAAAATTAGGCTCGATAGCAATTTGGTTTGGAGCCTTGTTATGGTTGTGGACAAATACGAGATCATTTGTTATATGACTTGGTCTCGTATTGTATTCGAGTGTGTTTACCCTTTTGGCTTATGACCATTAGGAGTGTTCTTTTAACATATTGGTGTTCGAGTCAACTTATATTATCACTTGCTATAATCAATAGATAGAAGTGTCGGTTGAACTTGTTAATTTGGAATCGGAATTCAATAATTATTATGTTATGATACTCAATTATCTTTTTTCTTTCTTTTGGCAGTCAAGTGATTCATTGATTAG</genome_strand>
        <mrna_strand>CGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTGATTCATTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269534" ref_strand="+" ref_description="SGN-E269534 [cLEM-2-G17]">
      <seq>gaaaatccaatcttttctcaaccccaagttttaaatccttaaaattttcacaaatttcataatttttggtgttgtttttgacagatttctttaccaaaaagatcagcaatggagctatttcacaaagcaaaagctgttcgtttacagagtcaccatgagaagtacttaacagctgaagaagatgaagaatcagtgactcaagatcgtaacggagcatcaaaaaacgcgaaatggacagttgaatttgttgaaaaaaccgaaaatgttattcgattgaagagttgttatgggaaatatttaacagcttcgaatcagccatttcttctgggtatgactggtagaaaagttcttcaaactttgcctaatcgacttgattcttcaattgaatgggaacccattagagaaggacatcaagttaagctgaggacgagatatgggcaatttttgaggggaaatgggggtcttcctccatggagaaattctgttactcatgatattcctcataggacgaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="62705" stop="61589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62405" g_stop="61889" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E269534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62405" e_stop="61889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTC</genome_strand>
        <mrna_strand>GAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602632" ref_strand="+" ref_description="SGN-E602632 [55700]">
      <seq>ttttttactaaattccatatattcatcactagttacaaaaaattttattaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaagtaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgaagccgaaaacagccactttatacggcttaaaagtagctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaggtacttcaaactttgcctgaaaagatgaaggacttgagaatagaatgggaagtaataagggatggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtgacacatgataatccttatagtggtagcacactaaattggattttgtggaatgttgaacctatcgatgtgcccgaaaatgaatcgttgactgattatttaactatggtttcaagtttttcatcagtttctgatgaacttttaagcttggatttaggatctccaacttccgtacattcaagtttttctttctcacctaggagtactaagatttctttaccaaaaagatcagcaatggagctatttcacaaagcaaaaagctgttcgtttacagagtcaccatgaacaagtacttaacagctgaagaaagatgaagagtcagtaactcaagatcgtaacggagcttcaaaaaacgcgaaaatggacagttgaattttgttggaaaaaaccgaaaaacgttattcgattaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="65927" stop="61843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65682" g_stop="65387" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64432" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="641" r_length="351" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62321" g_stop="62127" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="843" r_length="202" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E602632" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65682" e_stop="65387"/>
          <exon e_start="64782" e_stop="64432"/>
          <exon e_start="62321" e_stop="62127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAGGTATGTTATTTCGTTATGTCAACTTATTATTTTTTTTTTGCGTTTGTATTGCCTTATTGTTTTATTAGGTCATTATTGCGATTTATAATTATTAAATGAGTAAAATGTCTGATTAATTTGAATTCATATAGAAGATCCATTAAATGAAAGACTTAGTATTCGAATCTTGTAATTAAAAATTAAAGATATTATATTGATCCACCATGATTCTAATAATAATTAACATAATTACTAGCTTGTCTTTTGCGTTTAGTGCTAGATCTTTAGATTTATTAGCTAAATGGGAATATGACTAATTACTAATTAGGAAAATTAATACTTCTTTGTAGGAGTTTATGTTACATTTCTATAAACCATAATTAGGTGGAAGTATACTTCACTACGTAACAACTAACAACAAAAAAGGAAGTTGAGATAAAGAAGTAATTAAAAGGATATAATTATGATCGCTAACTCAACTAAAAGAGTTGAGAAAAAGTGGTTAATTAAGTAAAATATCACCATTTTAGTATATTTGGTTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAACTTAATTTTTCGATAATAACAGAAATTGGAGAAAAAAAACAATTTCTTCTTTGAAGAAAGTAGTTAATTAAGTAAATATCACCATTTTAGTATATTTGATTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAGCTTAATTTTTCTATAGTAACAGAAGTTGTTTTTTAGAAGTTGAAGAAAAAAAAACAATTTCTTCTTTTGAAGTATTTTTGAGATGATTGTCTGATGCATATTGATGTATTAATATTAAAAAAAAATAAGTTTTTAACTGATTAGTTAAACATAACCTGTAATTCTATTCGAAAAATACTTTTGAATAAAAGAAAAAATAAATTTTCGAAGTTTTACCCAAATTAACTATTAGCTTGAATGTAATTGAGTCCTATAATTTTGTTTAGAAATTGGCTATAGCTTGTTTATTATGTCTTTTGGATAAAAACTTTTTGAAATACATTTTTGTAGAAGGATACAAAATTGACCTACTTTTGATTATTGCCCCATCATTTTTGATATTATTATATTTGAGAAACCTTAGGCTATAATAAAGAATATTCATAACATACACTCCTACTTTTATGAGATAATTAATTACCCTCTTTATCCTTTTCTTGTTCTATAAACCAACAATCTATATTTTAATGATTCTATTAGAATGAGTATAAAAATAAATCAGTCGTAATGAAATGATTGAGATTCTTATCCTATTAATTAAGAATCTCAAATTTCTGTATAATTAAAATAAATATTTTTTTAATATAGGTCAATTTTTTAAATTCATATTGAAATAATTTTAAATATCGAGAATCAAAAAAATTTGACCACAAAGTCTCACAAGATAAATAGAGATGAGACAAACGTTGATCCAAAAAGATTATACAAAGGAAGTAACCTAGAACCTTCATAAAATTAAAAATGTTTTTTTTTGTTTCGATTATTAAAGCTTACTTTATATTAATAATATCGTAAACTTTCTTCTTCGTCTCATTCTAGTCTCATTCTAGAGCCAGAATCAAAAAAAAATTCTTTCAAATTTTAAGTTATATATATGAAAAGTATAAATTTTGTGTTACTCTATCGATATAATTAGATTCTTTTGTGAGGACAATTTACTATTTTTGCACCACCAATCAATTAACCATATAAAAAAAATAAAGTAACCATAATTATCTTTTTAAACAAACTTAACCAAATATGAAAGTGTATTTTTTTTTTCCATTCCTTAATGATCTAATTTTGACCATGTCTAAAAATAGAAAAACTTCAATTAGTAAAAAAAAAAAAAACACATATCTTCACACGTGTCAACCTATATTTTCTCACGTGTCAAATATTTAACGCGCTTTCCTGCGTCTCCCCCATCAAACATGGCTGTCATCATCATAACAAAGAAAAAAACTTCTTCATTATTTCTTCAATTACTATAAAAAATACTCAAGAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGC-AAAAGCTGTTCGTTTACAGAGTCACCATG-AGAAGTACTTAACAGCTGAAG-AAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCG-AAATGGACAGTTGAA-TTTGTT-GAAAAAACCG-AAAATGTTATTCGATTGAAG</genome_strand>
        <mrna_strand>TTTTTTAC-TAAATTCC--ATATATTCATCACTAGTTACAA-AAAATTTTATT--AATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGTACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTAGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCAAACTTTGCCTGAAAAGATGAAGGACTTGAGAATAGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTGACACATGATAATCCTTATAGTGGTAGCACACTAAATTGGATTTTGTGGAATGTTGAACCTATCGATGTGCCCGAAAATGAATCGTTGACTGATTATTTAACTATGGTTTCAAGTTTTTCATCAGTTTCTGATGAACTTTTAAGCTTGGATTTAGGATCTCCAACTTCCGTACATTCAAGTTTTTCTTTCTCACCTAGGAGTACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAAGCTGTTCGTTTACAGAGTCACCATGAACAAGTACTTAACAGCTGAAGAAAGATGAAGAGTCAGTAACTCAAGATCGTAACGGAGCTTCAAAAAACGCGAAAATGGACAGTTGAATTTTGTTGGAAAAAACCGAAAAACGTTATTCGATTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602333" ref_strand="+" ref_description="SGN-E602333 [55310]">
      <seq>ccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgaagccgaaaacagccactttatacggcttaaaagtagctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaggtacttcaaactttgcctgaaaagatgaaggacttgagaatagaatgggaagtaataagggatggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtgacacatgataatccttatagtggtagcacactaaattggattttgtggaatgttgaacctatcgatgtgcccgaaaatgaatcgttgactgattatttaactatggtttcaagtttttcatcagtttctgatgaacttttaagcttggatttaggatctccaacttccgtacattcaagtttttctttctcacctaggagtactaagatttctttaccaaaaagatcagcaatggagctatttcacaaagcaaaagctgttcgtttacagagtcaccatgaaaagtacttaacagctgaagaagatgaagagtcagtaactcaagatcgtaacggagcttcaaaaaaacgcgaaatggacagttgaatttgttgaaaaaaccgaaaaacgttattcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="65831" stop="61843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65531" g_stop="65387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64432" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="496" r_length="351" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62321" g_stop="62133" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="687" r_length="191" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E602333" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65531" e_stop="65387"/>
          <exon e_start="64782" e_stop="64432"/>
          <exon e_start="62321" e_stop="62133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAGGTATGTTATTTCGTTATGTCAACTTATTATTTTTTTTTTGCGTTTGTATTGCCTTATTGTTTTATTAGGTCATTATTGCGATTTATAATTATTAAATGAGTAAAATGTCTGATTAATTTGAATTCATATAGAAGATCCATTAAATGAAAGACTTAGTATTCGAATCTTGTAATTAAAAATTAAAGATATTATATTGATCCACCATGATTCTAATAATAATTAACATAATTACTAGCTTGTCTTTTGCGTTTAGTGCTAGATCTTTAGATTTATTAGCTAAATGGGAATATGACTAATTACTAATTAGGAAAATTAATACTTCTTTGTAGGAGTTTATGTTACATTTCTATAAACCATAATTAGGTGGAAGTATACTTCACTACGTAACAACTAACAACAAAAAAGGAAGTTGAGATAAAGAAGTAATTAAAAGGATATAATTATGATCGCTAACTCAACTAAAAGAGTTGAGAAAAAGTGGTTAATTAAGTAAAATATCACCATTTTAGTATATTTGGTTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAACTTAATTTTTCGATAATAACAGAAATTGGAGAAAAAAAACAATTTCTTCTTTGAAGAAAGTAGTTAATTAAGTAAATATCACCATTTTAGTATATTTGATTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAGCTTAATTTTTCTATAGTAACAGAAGTTGTTTTTTAGAAGTTGAAGAAAAAAAAACAATTTCTTCTTTTGAAGTATTTTTGAGATGATTGTCTGATGCATATTGATGTATTAATATTAAAAAAAAATAAGTTTTTAACTGATTAGTTAAACATAACCTGTAATTCTATTCGAAAAATACTTTTGAATAAAAGAAAAAATAAATTTTCGAAGTTTTACCCAAATTAACTATTAGCTTGAATGTAATTGAGTCCTATAATTTTGTTTAGAAATTGGCTATAGCTTGTTTATTATGTCTTTTGGATAAAAACTTTTTGAAATACATTTTTGTAGAAGGATACAAAATTGACCTACTTTTGATTATTGCCCCATCATTTTTGATATTATTATATTTGAGAAACCTTAGGCTATAATAAAGAATATTCATAACATACACTCCTACTTTTATGAGATAATTAATTACCCTCTTTATCCTTTTCTTGTTCTATAAACCAACAATCTATATTTTAATGATTCTATTAGAATGAGTATAAAAATAAATCAGTCGTAATGAAATGATTGAGATTCTTATCCTATTAATTAAGAATCTCAAATTTCTGTATAATTAAAATAAATATTTTTTTAATATAGGTCAATTTTTTAAATTCATATTGAAATAATTTTAAATATCGAGAATCAAAAAAATTTGACCACAAAGTCTCACAAGATAAATAGAGATGAGACAAACGTTGATCCAAAAAGATTATACAAAGGAAGTAACCTAGAACCTTCATAAAATTAAAAATGTTTTTTTTTGTTTCGATTATTAAAGCTTACTTTATATTAATAATATCGTAAACTTTCTTCTTCGTCTCATTCTAGTCTCATTCTAGAGCCAGAATCAAAAAAAAATTCTTTCAAATTTTAAGTTATATATATGAAAAGTATAAATTTTGTGTTACTCTATCGATATAATTAGATTCTTTTGTGAGGACAATTTACTATTTTTGCACCACCAATCAATTAACCATATAAAAAAAATAAAGTAACCATAATTATCTTTTTAAACAAACTTAACCAAATATGAAAGTGTATTTTTTTTTTCCATTCCTTAATGATCTAATTTTGACCATGTCTAAAAATAGAAAAACTTCAATTAGTAAAAAAAAAAAAAACACATATCTTCACACGTGTCAACCTATATTTTCTCACGTGTCAAATATTTAACGCGCTTTCCTGCGTCTCCCCCATCAAACATGGCTGTCATCATCATAACAAAGAAAAAAACTTCTTCATTATTTCTTCAATTACTATAAAAAATACTCAAGAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATC-AAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCG-AAAATGTTATTCGA</genome_strand>
        <mrna_strand>CCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTAGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCAAACTTTGCCTGAAAAGATGAAGGACTTGAGAATAGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTGACACATGATAATCCTTATAGTGGTAGCACACTAAATTGGATTTTGTGGAATGTTGAACCTATCGATGTGCCCGAAAATGAATCGTTGACTGATTATTTAACTATGGTTTCAAGTTTTTCATCAGTTTCTGATGAACTTTTAAGCTTGGATTTAGGATCTCCAACTTCCGTACATTCAAGTTTTTCTTTCTCACCTAGGAGTACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAAAAGTACTTAACAGCTGAAGAAGATGAAGAGTCAGTAACTCAAGATCGTAACGGAGCTTCAAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAAACGTTATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429243" ref_strand="+" ref_description="SGN-E429243 [STM-51-B14]">
      <seq>ccctttccttaataaatccattattattattcctcttcaatttttttttttactaaattccatatattcatcactagttacaaaaaattttattaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaagtaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgaagccgaaaacagccactttatacggcttaaaagtagctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaggtacttcaaactttgcctgaaaagatgaaggacttgagaatagaatgggaagtaataagggatggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtgacacatgataatccttatagtggtagcacactaaattggattttgtggaatgttgaacctatcgatgtgcccgaaaatgaatcgttgactgattatttaactatggtttcaagtttttcatcagtttctgatgaacttttaagcttggatttaggatctccaacttccgtacattcaagtttttctttctcacctangagtactaagatttctttaccaaaaagatcagcaatggagctatttcacaaagcaaaagctgttcgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="66028" stop="61961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65728" g_stop="65387" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64432" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="686" r_length="351" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62321" g_stop="62261" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="747" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E429243" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65728" e_stop="65387"/>
          <exon e_start="64782" e_stop="64432"/>
          <exon e_start="62321" e_stop="62261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAGGTATGTTATTTCGTTATGTCAACTTATTATTTTTTTTTTGCGTTTGTATTGCCTTATTGTTTTATTAGGTCATTATTGCGATTTATAATTATTAAATGAGTAAAATGTCTGATTAATTTGAATTCATATAGAAGATCCATTAAATGAAAGACTTAGTATTCGAATCTTGTAATTAAAAATTAAAGATATTATATTGATCCACCATGATTCTAATAATAATTAACATAATTACTAGCTTGTCTTTTGCGTTTAGTGCTAGATCTTTAGATTTATTAGCTAAATGGGAATATGACTAATTACTAATTAGGAAAATTAATACTTCTTTGTAGGAGTTTATGTTACATTTCTATAAACCATAATTAGGTGGAAGTATACTTCACTACGTAACAACTAACAACAAAAAAGGAAGTTGAGATAAAGAAGTAATTAAAAGGATATAATTATGATCGCTAACTCAACTAAAAGAGTTGAGAAAAAGTGGTTAATTAAGTAAAATATCACCATTTTAGTATATTTGGTTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAACTTAATTTTTCGATAATAACAGAAATTGGAGAAAAAAAACAATTTCTTCTTTGAAGAAAGTAGTTAATTAAGTAAATATCACCATTTTAGTATATTTGATTAAGCTTTTGAAAATTAAAAATATCTTATTTTAAAAAGTTGATTAGGCTAAGCTTAATTTTTCTATAGTAACAGAAGTTGTTTTTTAGAAGTTGAAGAAAAAAAAACAATTTCTTCTTTTGAAGTATTTTTGAGATGATTGTCTGATGCATATTGATGTATTAATATTAAAAAAAAATAAGTTTTTAACTGATTAGTTAAACATAACCTGTAATTCTATTCGAAAAATACTTTTGAATAAAAGAAAAAATAAATTTTCGAAGTTTTACCCAAATTAACTATTAGCTTGAATGTAATTGAGTCCTATAATTTTGTTTAGAAATTGGCTATAGCTTGTTTATTATGTCTTTTGGATAAAAACTTTTTGAAATACATTTTTGTAGAAGGATACAAAATTGACCTACTTTTGATTATTGCCCCATCATTTTTGATATTATTATATTTGAGAAACCTTAGGCTATAATAAAGAATATTCATAACATACACTCCTACTTTTATGAGATAATTAATTACCCTCTTTATCCTTTTCTTGTTCTATAAACCAACAATCTATATTTTAATGATTCTATTAGAATGAGTATAAAAATAAATCAGTCGTAATGAAATGATTGAGATTCTTATCCTATTAATTAAGAATCTCAAATTTCTGTATAATTAAAATAAATATTTTTTTAATATAGGTCAATTTTTTAAATTCATATTGAAATAATTTTAAATATCGAGAATCAAAAAAATTTGACCACAAAGTCTCACAAGATAAATAGAGATGAGACAAACGTTGATCCAAAAAGATTATACAAAGGAAGTAACCTAGAACCTTCATAAAATTAAAAATGTTTTTTTTTGTTTCGATTATTAAAGCTTACTTTATATTAATAATATCGTAAACTTTCTTCTTCGTCTCATTCTAGTCTCATTCTAGAGCCAGAATCAAAAAAAAATTCTTTCAAATTTTAAGTTATATATATGAAAAGTATAAATTTTGTGTTACTCTATCGATATAATTAGATTCTTTTGTGAGGACAATTTACTATTTTTGCACCACCAATCAATTAACCATATAAAAAAAATAAAGTAACCATAATTATCTTTTTAAACAAACTTAACCAAATATGAAAGTGTATTTTTTTTTTCCATTCCTTAATGATCTAATTTTGACCATGTCTAAAAATAGAAAAACTTCAATTAGTAAAAAAAAAAAAAACACATATCTTCACACGTGTCAACCTATATTTTCTCACGTGTCAAATATTTAACGCGCTTTCCTGCGTCTCCCCCATCAAACATGGCTGTCATCATCATAACAAAGAAAAAAACTTCTTCATTATTTCTTCAATTACTATAAAAAATACTCAAGAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTAC</genome_strand>
        <mrna_strand>CCCTTTCCTTAATAAATCCATTATTATTATTCCTCTTCAA-TTTTTTTTTTTAC-TAAATTCC--ATATATTCATCACTAGTTACAA-AAAATTTTATTAA--TGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGTACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTAGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCAAACTTTGCCTGAAAAGATGAAGGACTTGAGAATAGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTGACACATGATAATCCTTATAGTGGTAGCACACTAAATTGGATTTTGTGGAATGTTGAACCTATCGATGTGCCCGAAAATGAATCGTTGACTGATTATTTAACTATGGTTTCAAGTTTTTCATCAGTTTCTGATGAACTTTTAAGCTTGGATTTAGGATCTCCAACTTCCGTACATTCAAGTTTTTCTTTCTCACCTANGAGTACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477657" ref_strand="+" ref_description="SGN-E477657 [cSTD-1-G14]">
      <seq>ccttaataaatccattattattattcctcttcaatttttttttttactaaattccatatattcatcactagttacaaaatttttattaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaagtaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgaagccgaaaacagccactttatacggcttaaaagtagctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaggtacttcaaactttgcccgaaaagacgaaggacttgagaatcgaatgggaagtaataagggatggatttcaagtaaaataagggggtttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtgacacatgataatccttatagtggtagcacattaaattggattttgtggaacgttgaacctatcgatgtgcccgaaaatgaatcgttgactgattatttaactatggtttcaagtttttcatcagtttctgatgaacttttaagcttggatttangatctccaacttctgtacttcaagtttttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="66022" stop="64150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65722" g_stop="65387" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64450" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="659" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E477657" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65722" e_stop="65387"/>
          <exon e_start="64782" e_stop="64450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTC</genome_strand>
        <mrna_strand>CCTTAATAAATCCATTATTATTATTCCTCTTCAATTTTTT-TTTTTAC-TAAATTCC--ATATATTCATCACTAGTTACAA--AATTTTTATT--AATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGTACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTAGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCAAACTTTGCCCGAAAAGACGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAA-TAAGGGGGTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTGACACATGATAATCCTTATAGTGGTAGCACATTAAATTGGATTTTGTGGAACGTTGAACCTATCGATGTGCCCGAAAATGAATCGTTGACTGATTATTTAACTATGGTTTCAAGTTTTTCATCAGTTTCTGATGAACTTTTAAGCTTGGATTTANGATCTCCAACTTCTGTAC-TTCAAGTTTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276997" ref_strand="+" ref_description="SGN-E276997 [cLEN-22-F12]">
      <seq>ctttccataataaatccattattaatattcctcttcaattttttttttttacttaaattccatatatattcatcactaattacaatttttttttattaaaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaaataccttgtagccgatgatgatcaagaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgaacttgttgaagccgaaaacagccactttatacggcttaaaagtggctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaggtaattcaaactttgcccgaagaaatgaaggacttgagaatcgaatgggaagtaataagggatggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaataaagtaacacatgataatccatatagtggtagtacacaaaattggattttgtggaacgttgaacctattgatgtgcccgaaaatgaatcgttgacggaatatttaactatggtttcaagtttttcatcgatttctgatgagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="66026" stop="64199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65726" g_stop="65387" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64499" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="622" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E276997" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65726" e_stop="65387"/>
          <exon e_start="64782" e_stop="64499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTT</genome_strand>
        <mrna_strand>CTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAG--AATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480883" ref_strand="+" ref_description="SGN-E480883 [cSTD-15-N7]">
      <seq>cttcaattttttttacttaattccatatattcatcactaattacaaattttttattaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaagtaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgacgccgaaaacagccactttatacggcttaaaagtagctccggcaagtatctcacggcttccgacgagccgtttcttcttggcatgaccggaaaaaaagtacttcaaactttgcccgaaaaaatgaatgacttgagaatagagtgggaagtggtaagggatggatttcaagtaaaattaaggggttttggaggaaaatatttacgtgcaaatggaggaatgccaccatggagaaattaagtgacacatgataatccttatagtggtagcacacaaaatggggattttgtggaccgttgaacctattgatgtgccccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="65963" stop="64262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65690" g_stop="65387" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64782" g_stop="64563" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="518" r_length="221" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E480883" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65690" e_stop="65387"/>
          <exon e_start="64782" e_stop="64563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAGGTAAGTTTTACTTAGAGTAATTATTAATTACAAAATATGTCGTAATTTTAATATTTTTATTTACTTAATTATATTTTTAATACGTTTTGATTAGATAATTTCTTAAATATATTATTGTTGTTATATAAATTATTGAATGTTCTTGATATTAAAAAAAAAAAATCAATAATAAAGGGGTTTGAAATATTGAATTAGGTCACATGTTCTAATTCTAAGTTGTGATTTTTTTTTTCTTTGTTGAATTTTATTATATAAAGTTATTGCTTAAATGTTTTTTTAGATTAACCATGAGTTTTTTTTTTAAAAAAAAATGAATCGTCTTGAGATTTTTGGTTGCGCTTAATTAAAATTTTGATTTTGCTAGTGCTAAGTATTTTTCACTTAAATATAAAAAAAAAATTAAAATGTTTATTTTATTGAATTCTGATTCCGCTAGTGTTCAAATATTTTTCTGATCAAACATGGCTTTTCTTTGAAAAAAAAGAATAGTCTCAAGATTTGACTCGTGTTTTTTATTTATGCTTATTATGTTTAATGATGTAATTGTTTTATTTTTGAAAAAACATTACATATTTTTTTATATATATAATTATATTTTAAATAGGTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAAT-TGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAA</genome_strand>
        <mrna_strand>CTTCAATTTTTTTTACTTA-ATTCC--ATATATTCATCACTAATTACAA--ATTTTTTATT--AATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGTACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGACGCCGAAAACAGCCACTTTATACGGCTTAAAAGTAGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCAAACTTTGCCCGAAAAAATGAATGACTTGAGAATAGAGTGGGAAGTGGTAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATTAAGTGACACATGATAATCCTTATAGTGGTAGCACACAAAATGGGGATTTTGTGGACCGTTGAACCTATTGATGTGCCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477863" ref_strand="+" ref_description="SGN-E477863 [cSTD-2-C1]">
      <seq>ccatatattcatcactaattacaaattttttatgaaggggagggggctacaaagccaaagctgtaaaattaaaaagtcatctagacaaggaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaaagcccggtggcttgttgagcttgtcgacgccgaaaacagccactttatacggcttaaaaggagctccggcaagtatctcacggcgtccgacgagccgtttcttcttggcatgaccggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="65963" stop="65088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65665" g_stop="65388" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E477863" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65665" e_stop="65388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAA</genome_strand>
        <mrna_strand>CCATATATTCATCACTAATTACAA--ATTTTTTA-TGAAGGGGA-GGGGGCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGGACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAGCTTGTCGACGCCGAAAACAGCCACTTTATACGGCTTAAAAGGAGCTCCGGCAAGTATCTCACGGCGTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482490" ref_strand="+" ref_description="SGN-E482490 [cSTD-22-K4]">
      <seq>ccctttccttaataaatccattattattattcctcttcaatttttttttttactaaattccatatattcatcactagttacaaaaaattttattaatggattttttctacaaagccaaagctgtaaaattaaaaagtcatctagacaagtaccttgtagccgatgatgatcaagaaaatatccgacaaagccgaaacggctcatcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="66028" stop="65211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65728" g_stop="65511" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E482490" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65728" e_stop="65511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAA</genome_strand>
        <mrna_strand>CCCTTTCCTTAATAAATCCATTATTATTATTCCTCTTCAA-TTTTTTTTTTTAC-TAAATTCC--ATATATTCATCACTAGTTACAA-AAAATTTTATTAA--TGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAGTACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371532" ref_strand="+" ref_description="SGN-E371532 [TUS-29-N14]">
      <seq>tcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77344" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77044" g_stop="76971" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="224" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75082" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="675" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371532" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77044" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATAG</genome_strand>
        <mrna_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371017" ref_strand="+" ref_description="SGN-E371017 [TUS-29-N13](-)">
      <seq>ttcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77345" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77045" g_stop="76971" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="160" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75083" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="675" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371017" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77045" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATA</genome_strand>
        <mrna_strand>TTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371531" ref_strand="+" ref_description="SGN-E371531 [TUS-29-N14](-)">
      <seq>ttcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77345" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77045" g_stop="76971" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="160" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75083" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="675" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371531" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77045" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATA</genome_strand>
        <mrna_strand>TTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371018" ref_strand="+" ref_description="SGN-E371018 [TUS-29-N13]">
      <seq>tcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77344" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77044" g_stop="76971" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="224" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75083" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="674" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371018" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77044" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATA</genome_strand>
        <mrna_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371088" ref_strand="+" ref_description="SGN-E371088 [TUS-29-N15](-)">
      <seq>aatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77341" stop="74783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77041" g_stop="76971" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="156" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="221" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75083" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="671" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371088" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77041" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATA</genome_strand>
        <mrna_strand>AATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371089" ref_strand="+" ref_description="SGN-E371089 [TUS-29-N15]">
      <seq>tcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaagccaattctatcgttggtgagggcggagacacttgtagggagaacaagactcaaaactcggaagtccttaaataatctctttttttcataacggtgatattcagatcagattgttgatttcatgtacatgttatctttcaccagcacaggtagagaagaacttacaaaatcttgaataaatgaagtagtattttgatttgtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77344" stop="74790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77044" g_stop="76971" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="224" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75087" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="670" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E371089" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77044" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGA</genome_strand>
        <mrna_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695234" ref_strand="+" ref_description="SGN-E695234 [LH_Ea05P24](-)">
      <seq>gttactcgagggtttaaagtccagaatttgtgccatgaccacgaaaaaacgagaatatatgcagagagctgtcctgcttgcagaagtgttattcgaatatggtaagggtgaaaatgaacgggcattggaattgttcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgacgtttttaatgaagtttggatccctatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatccaagcaggcaaaaaaggtcagtcattggaaggtgcatacctcaactaatcttggcaaaaggatgataactatccaaaataaactcttttccacacctctcaaacgttagtgattttcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtcccccaagccaattctatcgttggtgagggcggaaacccttgtagggagaacaagacttaaactcggaagtccttaaataatctctttttttcataacgatgatgttcagatcagattgttgatttcatgtatatgttatctttcaccagtcccaggtagagaagaacttccaaaatggtgaataaatgaagtagttctttgaatttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="78010" stop="74778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77806" g_stop="77783" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77782" i_stop="77709" i_length="74">
            <donor d_prob="0.685" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77708" g_stop="77657" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="76" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77656" i_stop="77061" i_length="596">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77060" g_stop="76971" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="166" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="251" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="316" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75532" g_stop="75095" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="753" r_length="437" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="771"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E695234" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77806" e_stop="77783"/>
          <exon e_start="77708" e_stop="77657"/>
          <exon e_start="77060" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCGAGGGTTTGAAGTCCAGGTCAGGATGGCTCTTTCCAATCTCATAACTATGCTGTGTCCAACGTACTCTGATAATTTTGTGCTTTCCTGTAGAATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTGGTTTGTCCCTTTTTCTATTTACTGAATTCTTCATTACTTCTTGGAGAAAATGTTTCACAATTTCTTTCCTCTTTCAATAGCAAAAGATTCTTTTTTATTTAATACTAAAAGATTTTCCTAATGCGTTTTACTGTCTTTACAACTTGGGCCTTTTTTAGACCCAAAGGATTCATTCTGCTGATTGCTGTTGGGAGATGAAAACATAGTGCTGTTTAAACTTACTCCCTCTGTTTCAGTTTGTTTGTTTGGTTTCAAGATTTATAAGACACTTGAATCTTGTGATCACTAATATGCGTAGAAGGTACCAAAATGTCATTTAATCTTGTGGCCGTAAACATTAACATGCCATGTTGAAAGTTAGAATAAAAGAGTTGCCAAAAAAAGGAAGACATTCTTTTTAAAACAGATTAAAAAGGAAAGTAAAACAAACAAATTTTAATGGAGGGAGTATTGATTATACTGTTGCTTGATTCTCGTGCCAATCACATCTTTGAAAATATTGATTCATTTAATAATTGTACGCTTGATATTTGATAGATAAAAACTGTTTCTTTCAATTTTTAACTTTTAATTCTTTCTTTACATTTTTATTTTAGCTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAG-CACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTT</genome_strand>
        <mrna_strand>GTTACTCGAGGGTTTAAAGTCCAG..........................................................................AATTTGTGCCATGACCACGAAAAAACGAGAATATATGCAGAGAGCTGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGTTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGACGTTTTTAATGAAGTTTGGATCCCTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATCCAAGCAGGCAAAAAAGGTCAGTCATTGGAAGGTGCATACCTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTCCACACCTCTCAAACGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGT-CCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAAACCCTTGTAGGGAGAACAAGACT-TAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGATGATGTTCAGATCAGATTGTTGATTTCATGTATATGTTATCTTTCACCAGTCCCAGGTAGAGAAGAACTTCCAAAATGGTGAATAAATGAAGTAGTTCTTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282637" ref_strand="+" ref_description="SGN-E282637 [cLER-15-A16]">
      <seq>tcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggcaaaaggatgataactatccaaaataaactcttttgcacacctctcaaatgttagtgattntcacctcttgtatccctctcctctagtagaatgtgtagtaaagtctctccatgttgtgtatttataagcagtgtccccccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="77344" stop="74993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77044" g_stop="76971" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="224" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75532" g_stop="75293" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="464" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E282637" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77044" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAG</genome_strand>
        <mrna_strand>TCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTNTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357320" ref_strand="+" ref_description="SGN-E357320 [cTOS-23-G2]">
      <seq>ctagctgatcgtctgacagataaagcattctggtatcttgaatggcacctggatgtattggtgttatgggccctatcctatacaggcgaagtttctaaagcagaagagttactcgagggtttgaagtccagaatttctaccatgaccaagaaaaaacgagaatatatgcaaagagctgtgctgcttgcagaagtgttattcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaagtttggatcactatgttgctaaacagtggtcgggctacaaaagctattgaggcaatagagatgcagctaaaaaagagggaaggaaccccgttcttgtggcgcctcctggaaaaaggttattcatcaatgtcaagaaaccaagaagctatacaagcaggcaaaaaagctcagtcattggaaggtgcatacttcaactaatcttggncaaaggatgataactatccaaaataaactcttttgcacacctctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="78760" stop="75087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78460" g_stop="78437" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547">
            <donor d_prob="0.458" d_score="0.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77889" g_stop="77783" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77782" i_stop="77709" i_length="74">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77657" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="183" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77656" i_stop="77061" i_length="596">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77060" g_stop="76971" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="273" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76877" g_stop="76793" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="358" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76392" g_stop="76328" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="423" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75532" g_stop="75387" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="569" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E357320" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78460" e_stop="78437"/>
          <exon e_start="77889" e_stop="77783"/>
          <exon e_start="77708" e_stop="77657"/>
          <exon e_start="77060" e_stop="76971"/>
          <exon e_start="76877" e_stop="76793"/>
          <exon e_start="76392" e_stop="76328"/>
          <exon e_start="75532" e_stop="75387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGATCGTCTGACAGATAAAGTGAGTTCAGGTGCAGAAGCATGTGAATTTCTGTTTTTAGGTTATTAGGATAATTGCATGCATATTCACTTAAGTTGGGATATGTATGTCTTTCCTACCTTTGAAATGTGGAAAATCGGATGACAAGCTAGTTTGTTTAGCTAATCATCAAAGACTTCATGAAAAAATATGGAACAAATTTAATATACTTGTTATTATTGTGAAATGAAAGGTGTTGATTTAAGTTATTTAACAATACATGCTTTTAGAAAGGTCCTCCGTAACCCCATACTAAATAGAATAAAACTGATGAAGAAAATCTTCAATCAGTTGAGAAAATAGATAAATGATATGAATCAGGTTTCGTTCTTTCAGTGTCATTTGCTTTTTCATGAATCATTTCCTTTCAGATTAATGTTAATGATACTTCGGATTGGAACTGTAAACTTGATCTGCATTACTATGAACTTCCATTTAGCAATTACATTGTGCGGTCCTCTTCCCCTTCTGTCTATACAATGTAATAAAAACTAAATGTTGTTTCTTTGTGCTGCCACTTCTATATTAGGCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAGGTCAGGATGGCTCTTTCCAATCTCATAACTATGCTGTGTCCAACGTACTCTGATAATTTTGTGCTTTCCTGTAGAATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTGGTTTGTCCCTTTTTCTATTTACTGAATTCTTCATTACTTCTTGGAGAAAATGTTTCACAATTTCTTTCCTCTTTCAATAGCAAAAGATTCTTTTTTATTTAATACTAAAAGATTTTCCTAATGCGTTTTACTGTCTTTACAACTTGGGCCTTTTTTAGACCCAAAGGATTCATTCTGCTGATTGCTGTTGGGAGATGAAAACATAGTGCTGTTTAAACTTACTCCCTCTGTTTCAGTTTGTTTGTTTGGTTTCAAGATTTATAAGACACTTGAATCTTGTGATCACTAATATGCGTAGAAGGTACCAAAATGTCATTTAATCTTGTGGCCGTAAACATTAACATGCCATGTTGAAAGTTAGAATAAAAGAGTTGCCAAAAAAAGGAAGACATTCTTTTTAAAACAGATTAAAAAGGAAAGTAAAACAAACAAATTTTAATGGAGGGAGTATTGATTATACTGTTGCTTGATTCTCGTGCCAATCACATCTTTGAAAATATTGATTCATTTAATAATTGTACGCTTGATATTTGATAGATAAAAACTGTTTCTTTCAATTTTTAACTTTTAATTCTTTCTTTACATTTTTATTTTAGCTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAGGTTAGATCATTTGGCTTCCATTTTGAAAGAAATTCTTATTAGAGGTTTCCGGTGGTGGTGATAGTTTTTATTCCTGTAAAATGGAGTATGGCCTCTTTAAGAACAACAACTACAACATTCCCAGTGTAATCCCACAAATGAGGTCGGGGAAGATTAGGATGTACGCAGACCTCACCCCTACCTTTGTGAGGTAGGAAGGTTGTCTCTTATAGACCGTCAGCTCAAGAGCAGTCAAAGTAGGGTTGCGAGAAAAAGTATGGCCTCTTTGATAAAGAAGGAAATTTGATCCTAGGATCTCTCTGCTACCCTTCAAACCTCACTCTTTGGTATACACTTATTTTTGTCTAATCTTAAAAGTTCGTAGTCACTTATCCTTGAGTTGTGGTTTTGGAACTCGCAGCTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTGGTACGTCTTGGCTCTCTGATCCATTATTTTAGCTTCTAAGATGAGTATATTGTTCAGGAATAACTGCACTTTTCACTGCCATCTCTGAGGATTAGCGCTCCTTATCCAGGTGTTTAAATTGCCTCACATAAGCCTTTATTCTTTTCTAACATGCATCGACAAATCATATCGATAATGGTCTATCAAATACGTACCTCGTGGATTGCAAATTCTACTATGAATTACTTTTTACCTCGACTTTGTATCTCCAAATTCTGCAGTAAATTCAGAGTGTTTTATGTATATATGAAGGTGAGATGGAAAAAATGTACCAATAAAGAGTGTTCTTTCTTGTACATATGCAATTACAAGTATAAGCACATTCCAAGTATAAAATATCCTATGCTTCAATACTCCATATTTAATGTCTTCATAAGGTTTCTGAAGGCTCAAATTTGATGCTATCAAGTTGTAAGGCATAGAGTACTAGTTGCATATTAAGGAGGACCAAAAATAAGTCGGCGCATGCACGATGTAGAATGAGAAGTTTCTTCTGTTCTTTTATTAATTGACTTATGTATCAGATTCCATCCACCCTACAGTCGACGATAATGATTGGCTCTATCTATGAAGATATTGATTTTGTTCACAATAATCAAATTATATCTGGCCTTGTTTACACCTTTCTAGTCATTCTCGATAAATCATTGTTCATCTTTCTCTCCTCTTGCTCGACAAACCAACTTTTCAAGCCTTGATTTGTCCTCCGCGAGAAGGAATTGGATTATAATGTATAACTGTTGCTTGTTGGTTCAGGAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAAT</genome_strand>
        <mrna_strand>CTAGCTGATCGTCTGACAGATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAG..........................................................................AATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGNCAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341559" ref_strand="+" ref_description="SGN-E341559 [cTOE-23-F21]">
      <seq>gaaaaagtaagagatgtttatgatcaaaacatctggaaagagttggaaagaattgatgccagtttagccgaagtgtacttgaatgctgttggtttgttactccgggtatatttacgaggtgggattaatatatttggggaccgtttaaagatcctagctgatcgtctgacagataaagcattctggtatcttgaatggcacctggatgtattggtgttatgggccctatcctatacaggcgaagtttctaaagcagaagagttactcgagggtttgaagtccagaatttctaccatgaccaagaaaaaacgagaatatatgcaaagagctgtgctgcttgcagaagtgttattcgaatatggtaagggtgaaaatgaacgggcattggaattgctcggacaaacatttgatgccattgactacaagattattggagcatcagacgagcagcttgatgtttttaatgaaatttggatcactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="78990" stop="76522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78690" g_stop="78619" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78541" g_stop="78437" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="177" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77889" g_stop="77783" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="284" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77782" i_stop="77709" i_length="74">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77708" g_stop="77657" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="336" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77656" i_stop="77061" i_length="596">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77060" g_stop="76971" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="426" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76877" g_stop="76822" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="482" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E341559" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78690" e_stop="78619"/>
          <exon e_start="78541" e_stop="78437"/>
          <exon e_start="77889" e_stop="77783"/>
          <exon e_start="77708" e_stop="77657"/>
          <exon e_start="77060" e_stop="76971"/>
          <exon e_start="76877" e_stop="76822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAAGTAAGTTAGTTGTTTGTAGTCAAAGAGCATTTTAGTTCTTTAAATATGCTGAGAGTTACATTTTTCTTGGTATGCAGGTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAAGTGAGTTCAGGTGCAGAAGCATGTGAATTTCTGTTTTTAGGTTATTAGGATAATTGCATGCATATTCACTTAAGTTGGGATATGTATGTCTTTCCTACCTTTGAAATGTGGAAAATCGGATGACAAGCTAGTTTGTTTAGCTAATCATCAAAGACTTCATGAAAAAATATGGAACAAATTTAATATACTTGTTATTATTGTGAAATGAAAGGTGTTGATTTAAGTTATTTAACAATACATGCTTTTAGAAAGGTCCTCCGTAACCCCATACTAAATAGAATAAAACTGATGAAGAAAATCTTCAATCAGTTGAGAAAATAGATAAATGATATGAATCAGGTTTCGTTCTTTCAGTGTCATTTGCTTTTTCATGAATCATTTCCTTTCAGATTAATGTTAATGATACTTCGGATTGGAACTGTAAACTTGATCTGCATTACTATGAACTTCCATTTAGCAATTACATTGTGCGGTCCTCTTCCCCTTCTGTCTATACAATGTAATAAAAACTAAATGTTGTTTCTTTGTGCTGCCACTTCTATATTAGGCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAGGTCAGGATGGCTCTTTCCAATCTCATAACTATGCTGTGTCCAACGTACTCTGATAATTTTGTGCTTTCCTGTAGAATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTGGTTTGTCCCTTTTTCTATTTACTGAATTCTTCATTACTTCTTGGAGAAAATGTTTCACAATTTCTTTCCTCTTTCAATAGCAAAAGATTCTTTTTTATTTAATACTAAAAGATTTTCCTAATGCGTTTTACTGTCTTTACAACTTGGGCCTTTTTTAGACCCAAAGGATTCATTCTGCTGATTGCTGTTGGGAGATGAAAACATAGTGCTGTTTAAACTTACTCCCTCTGTTTCAGTTTGTTTGTTTGGTTTCAAGATTTATAAGACACTTGAATCTTGTGATCACTAATATGCGTAGAAGGTACCAAAATGTCATTTAATCTTGTGGCCGTAAACATTAACATGCCATGTTGAAAGTTAGAATAAAAGAGTTGCCAAAAAAAGGAAGACATTCTTTTTAAAACAGATTAAAAAGGAAAGTAAAACAAACAAATTTTAATGGAGGGAGTATTGATTATACTGTTGCTTGATTCTCGTGCCAATCACATCTTTGAAAATATTGATTCATTTAATAATTGTACGCTTGATATTTGATAGATAAAAACTGTTTCTTTCAATTTTTAACTTTTAATTCTTTCTTTACATTTTTATTTTAGCTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAGGTAGTTTGAACATGAACAAGGGGTACTCATGCAGTTTGTTTAGCATTATTTTATTTGTTTCATGAATGATTAGCAAAATACTACCTTGTGCAGATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTAT</genome_strand>
        <mrna_strand>GAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA.............................................................................GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAG..........................................................................AATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG.............................................................................................ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAATTTGGATCACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305499" ref_strand="+" ref_description="SGN-E305499 [cLEX-15-H24]">
      <seq>tgaagatgcctggacacaccatgctctctgtcatgtttatcagtatgagtgtcgttttaaagaagcagtacaatttatggaggagtgctcaagaacctggagttctttgtcatcttttatgtatacacacaattggtggcatgttgcgctttgttatatggaaggtcattcgcccatggaaaaagtaagagatgtttatgatcaaaacatctggaaagagttggaaagaattgatgccagtttagccgaagtgtacttgaatgctgttggtttgttactccgggtatatttacgaggtgggattaatatatttggggaccggttaaagatcctagctgatcgtctgacagataaagcattctggtatcttgaatggcacctggatgtattggtgttatgggccctatcctatacaagcgaagtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="79813" stop="77517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79513" g_stop="79489" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79488" i_stop="78926" i_length="563">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78925" g_stop="78831" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="120" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78830" i_stop="78749" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78748" g_stop="78619" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="250" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78541" g_stop="78437" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547">
            <donor d_prob="0.458" d_score="0.98"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77889" g_stop="77817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="428" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E305499" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79513" e_stop="79489"/>
          <exon e_start="78925" e_stop="78831"/>
          <exon e_start="78748" e_stop="78619"/>
          <exon e_start="78541" e_stop="78437"/>
          <exon e_start="77889" e_stop="77817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGCCTGGACACACCATGCTGTGAGTTACTCCTGTTTGCAAGTTACTCTTTCCTTTCTAGCTGATACAAACACATTTGTGGTATTATATGTGCTTGAATTTACTCTGCAAAATTTATCAACTATAACTATTTCTATGCCTCACTACCAAACTAGTTGGATTGGCTCCGCCAAAAAGCTTGTTTATCCCTATATTTCCATATAAGCATCCAAACCAGAAAGTGGTTACAAAGGTTGCTGGCAAACACCAGACCAAGCTCGTGAAAATCTTCTGCACAGAACAAACCGTGTAATTGTACCATTAACCTCTATCCCAACTAGTGAAATATCCATTGCACATTACAAACTTTTAATTGCTAGTCCAGTCATCATAATACTACAGATAGTTAACAAAGGTCCCATTTGAGGGAATCTCTTCCTATTGTTTTATCCTAGGAGAAAAAGAATAAGCATGGACATAATTTTTTATTGTGATGGAATTGGCGGTGTAGTTTGTATCATTTTGTCGGAGGAAATGCATTTTATTCATTCACTGATATTCTAGCATCCTATTTTTTTGCTTATTTTATCACAATCTCCTTGCAGCTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTATGTATGCGCAGAATCTGATAAAAGCACTCCTAGTTCGGCTCTGAATATAGTATTTTTAAAAGCTAACCATTAGGATATTGCAGGTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAAGTAAGTTAGTTGTTTGTAGTCAAAGAGCATTTTAGTTCTTTAAATATGCTGAGAGTTACATTTTTCTTGGTATGCAGGTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAAGTGAGTTCAGGTGCAGAAGCATGTGAATTTCTGTTTTTAGGTTATTAGGATAATTGCATGCATATTCACTTAAGTTGGGATATGTATGTCTTTCCTACCTTTGAAATGTGGAAAATCGGATGACAAGCTAGTTTGTTTAGCTAATCATCAAAGACTTCATGAAAAAATATGGAACAAATTTAATATACTTGTTATTATTGTGAAATGAAAGGTGTTGATTTAAGTTATTTAACAATACATGCTTTTAGAAAGGTCCTCCGTAACCCCATACTAAATAGAATAAAACTGATGAAGAAAATCTTCAATCAGTTGAGAAAATAGATAAATGATATGAATCAGGTTTCGTTCTTTCAGTGTCATTTGCTTTTTCATGAATCATTTCCTTTCAGATTAATGTTAATGATACTTCGGATTGGAACTGTAAACTTGATCTGCATTACTATGAACTTCCATTTAGCAATTACATTGTGCGGTCCTCTTCCCCTTCTGTCTATACAATGTAATAAAAACTAAATGTTGTTTCTTTGTGCTGCCACTTCTATATTAGGCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTA</genome_strand>
        <mrna_strand>TGAAGATGCCTGGACACACCATGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTAT..................................................................................GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA.............................................................................GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGGTTAAAGATCCTAGCTGATCGTCTGACAGATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAAGCGAAGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276976" ref_strand="+" ref_description="SGN-E276976 [cLEN-22-L5]">
      <seq>tgatttgtctctgaaacttgttgaacaggtcctaccagtaaataaacatggaagatacatttatggcatgctcgcatttgccctattggagcttggtcgatatgcggaggcaaaagaagctgcaaagaaaggctttgagattgatagtgaagatgcctggacacaccatgctctctgtcatgtttatcagtatgagtgtcgttttaaagaagcagtacaatttatggaggagtgctcaagaacctggagttctttgtcatcttttatgtatacacacaattggtggcatgttgcgctttgttatatggaaggtcattcgcccatggaaaaagtaagagatgtttatgatcaaaacatctggaaagagttggaaagaattgatgccagtttagccgaagtgtacttgaatgctgttggtttgttactccgggtatatttacgaggtgggattaatatatttggggaccgtttaaagatcctagctgatcgtctgacagataaagcattctggtatcttgaatggcacctggatgtattggtgttatgggccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="80182" stop="77538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79882" g_stop="79855" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79854" i_stop="79633" i_length="222">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79632" g_stop="79489" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="172" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79488" i_stop="78926" i_length="563">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78925" g_stop="78831" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="267" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78830" i_stop="78749" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78748" g_stop="78619" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78541" g_stop="78437" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="502" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77889" g_stop="77838" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="554" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E276976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79882" e_stop="79855"/>
          <exon e_start="79632" e_stop="79489"/>
          <exon e_start="78925" e_stop="78831"/>
          <exon e_start="78748" e_stop="78619"/>
          <exon e_start="78541" e_stop="78437"/>
          <exon e_start="77889" e_stop="77838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTCTCTGAAACTTGTTGAACAGGTTCATACCATATTGACTAAATATTGCCTTGACTTCTTCCTCTCCTAGACAACTTAAGAAACAAAATCAATAAAATAAATATGTAATAACTTGTATTAGACATTATATCTGGAGGTTGAGTATCCATAATAGGAGTGACTAATGTGGTCATTTCTTTAAAAGTGAGTTTCGATTCCTTTTATGCAATTATTCCTAGTAAAGTTTCTTGATTTTGTCCTACAGGTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCTGTGAGTTACTCCTGTTTGCAAGTTACTCTTTCCTTTCTAGCTGATACAAACACATTTGTGGTATTATATGTGCTTGAATTTACTCTGCAAAATTTATCAACTATAACTATTTCTATGCCTCACTACCAAACTAGTTGGATTGGCTCCGCCAAAAAGCTTGTTTATCCCTATATTTCCATATAAGCATCCAAACCAGAAAGTGGTTACAAAGGTTGCTGGCAAACACCAGACCAAGCTCGTGAAAATCTTCTGCACAGAACAAACCGTGTAATTGTACCATTAACCTCTATCCCAACTAGTGAAATATCCATTGCACATTACAAACTTTTAATTGCTAGTCCAGTCATCATAATACTACAGATAGTTAACAAAGGTCCCATTTGAGGGAATCTCTTCCTATTGTTTTATCCTAGGAGAAAAAGAATAAGCATGGACATAATTTTTTATTGTGATGGAATTGGCGGTGTAGTTTGTATCATTTTGTCGGAGGAAATGCATTTTATTCATTCACTGATATTCTAGCATCCTATTTTTTTGCTTATTTTATCACAATCTCCTTGCAGCTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTATGTATGCGCAGAATCTGATAAAAGCACTCCTAGTTCGGCTCTGAATATAGTATTTTTAAAAGCTAACCATTAGGATATTGCAGGTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAAGTAAGTTAGTTGTTTGTAGTCAAAGAGCATTTTAGTTCTTTAAATATGCTGAGAGTTACATTTTTCTTGGTATGCAGGTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAAGTGAGTTCAGGTGCAGAAGCATGTGAATTTCTGTTTTTAGGTTATTAGGATAATTGCATGCATATTCACTTAAGTTGGGATATGTATGTCTTTCCTACCTTTGAAATGTGGAAAATCGGATGACAAGCTAGTTTGTTTAGCTAATCATCAAAGACTTCATGAAAAAATATGGAACAAATTTAATATACTTGTTATTATTGTGAAATGAAAGGTGTTGATTTAAGTTATTTAACAATACATGCTTTTAGAAAGGTCCTCCGTAACCCCATACTAAATAGAATAAAACTGATGAAGAAAATCTTCAATCAGTTGAGAAAATAGATAAATGATATGAATCAGGTTTCGTTCTTTCAGTGTCATTTGCTTTTTCATGAATCATTTCCTTTCAGATTAATGTTAATGATACTTCGGATTGGAACTGTAAACTTGATCTGCATTACTATGAACTTCCATTTAGCAATTACATTGTGCGGTCCTCTTCCCCTTCTGTCTATACAATGTAATAAAAACTAAATGTTGTTTCTTTGTGCTGCCACTTCTATATTAGGCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTAT</genome_strand>
        <mrna_strand>TGATTTGTCTCTGAAACTTGTTGAACAG..............................................................................................................................................................................................................................GTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTAT..................................................................................GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA.............................................................................GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201622" ref_strand="+" ref_description="SGN-E201622 [cLEC-11-K10]">
      <seq>aacttgttgaacaggtcctaccagtaaataaacatggaagatacatttatggcatgctcgcatttgccctattggagcttggtcgatatgcggaggcaaaagaagctgcaaagaaaggctttgagattgatagtgaagatgcctggacacaccatgctgtatacacacaattggtggcatgttgcgctttgttatatggaaggtcattcgcccatggaaaaagtaagagatgtttatgatcaaaacatctggaaagagttggaaagaattgatgccagtttagccgaagtgtacttgaatgctgttggtttgttactccgggtatatttacgaggtgggattaatatatttggggaccgtttaaagatcctagctgatcgtctgacagataaagcattctggtatcttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="80168" stop="77570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79868" g_stop="79855" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79854" i_stop="79633" i_length="222">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79632" g_stop="79489" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="158" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79488" i_stop="78749" i_length="740">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78748" g_stop="78619" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="288" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78541" g_stop="78437" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="393" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77889" g_stop="77870" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="413" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E201622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79868" e_stop="79855"/>
          <exon e_start="79632" e_stop="79489"/>
          <exon e_start="78748" e_stop="78619"/>
          <exon e_start="78541" e_stop="78437"/>
          <exon e_start="77889" e_stop="77870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGTTGAACAGGTTCATACCATATTGACTAAATATTGCCTTGACTTCTTCCTCTCCTAGACAACTTAAGAAACAAAATCAATAAAATAAATATGTAATAACTTGTATTAGACATTATATCTGGAGGTTGAGTATCCATAATAGGAGTGACTAATGTGGTCATTTCTTTAAAAGTGAGTTTCGATTCCTTTTATGCAATTATTCCTAGTAAAGTTTCTTGATTTTGTCCTACAGGTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCTGTGAGTTACTCCTGTTTGCAAGTTACTCTTTCCTTTCTAGCTGATACAAACACATTTGTGGTATTATATGTGCTTGAATTTACTCTGCAAAATTTATCAACTATAACTATTTCTATGCCTCACTACCAAACTAGTTGGATTGGCTCCGCCAAAAAGCTTGTTTATCCCTATATTTCCATATAAGCATCCAAACCAGAAAGTGGTTACAAAGGTTGCTGGCAAACACCAGACCAAGCTCGTGAAAATCTTCTGCACAGAACAAACCGTGTAATTGTACCATTAACCTCTATCCCAACTAGTGAAATATCCATTGCACATTACAAACTTTTAATTGCTAGTCCAGTCATCATAATACTACAGATAGTTAACAAAGGTCCCATTTGAGGGAATCTCTTCCTATTGTTTTATCCTAGGAGAAAAAGAATAAGCATGGACATAATTTTTTATTGTGATGGAATTGGCGGTGTAGTTTGTATCATTTTGTCGGAGGAAATGCATTTTATTCATTCACTGATATTCTAGCATCCTATTTTTTTGCTTATTTTATCACAATCTCCTTGCAGCTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTATGTATGCGCAGAATCTGATAAAAGCACTCCTAGTTCGGCTCTGAATATAGTATTTTTAAAAGCTAACCATTAGGATATTGCAGGTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAAGTAAGTTAGTTGTTTGTAGTCAAAGAGCATTTTAGTTCTTTAAATATGCTGAGAGTTACATTTTTCTTGGTATGCAGGTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAAGTGAGTTCAGGTGCAGAAGCATGTGAATTTCTGTTTTTAGGTTATTAGGATAATTGCATGCATATTCACTTAAGTTGGGATATGTATGTCTTTCCTACCTTTGAAATGTGGAAAATCGGATGACAAGCTAGTTTGTTTAGCTAATCATCAAAGACTTCATGAAAAAATATGGAACAAATTTAATATACTTGTTATTATTGTGAAATGAAAGGTGTTGATTTAAGTTATTTAACAATACATGCTTTTAGAAAGGTCCTCCGTAACCCCATACTAAATAGAATAAAACTGATGAAGAAAATCTTCAATCAGTTGAGAAAATAGATAAATGATATGAATCAGGTTTCGTTCTTTCAGTGTCATTTGCTTTTTCATGAATCATTTCCTTTCAGATTAATGTTAATGATACTTCGGATTGGAACTGTAAACTTGATCTGCATTACTATGAACTTCCATTTAGCAATTACATTGTGCGGTCCTCTTCCCCTTCTGTCTATACAATGTAATAAAAACTAAATGTTGTTTCTTTGTGCTGCCACTTCTATATTAGGCATTCTGGTATCTTGAATG</genome_strand>
        <mrna_strand>AACTTGTTGAACAG..............................................................................................................................................................................................................................GTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA.............................................................................GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTGGTATCTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450769" ref_strand="+" ref_description="SGN-E450769 [cSTS-10-I22]">
      <seq>attttggctgctcattttctttgctctgctgattcttcgcgtgctatgctactttttgaagctgccaagtcttgtctagaacaagctagcttgtatgagaaagtggtttttgaggcagtaagttatttgattttacctaatagagatgatgatgtggctgttgaactacacttaaagctgcttaaggatttcccaagagatctgattacgctaaagcgagctcaagtgctctctttctacatgggtcgccctgatttgtctctgaaacttgttgaacaggtcctaccagtaaataaacacgaaagttacatttatggcatgctcgcgtttgccctattagagcttggtcgatatgtggaggcaaaagaagctgcaaataaaggctttgagattgatagtgaagatgcctggacacaccatgctctctgtcatgtttatcagtatgagtgtcgttttaaagaagcagtacaatttatggaggagtgctcaagaacctggagttctttgtcatcttttatgtatacacacaattggtggcacgttgcgctttgttatatggaaggtcattcgcccatggaaaaagtagagatgtttatgatcaaaacatctggaaagagctggaaagaattgatgctagtcccatctgaagtgtacttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="81202" stop="78328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80902" g_stop="80825" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80824" i_stop="80741" i_length="84">
            <donor d_prob="0.853" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80740" g_stop="80642" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="177" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80641" i_stop="79957" i_length="685">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79956" g_stop="79855" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="279" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79854" i_stop="79633" i_length="222">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79632" g_stop="79489" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="423" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79488" i_stop="78926" i_length="563">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78925" g_stop="78831" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="518" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78830" i_stop="78749" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78748" g_stop="78619" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="648" r_length="130" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77">
            <donor d_prob="0.958" d_score="0.84"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78541" g_stop="78529" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="661" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E450769" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80902" e_stop="80825"/>
          <exon e_start="80740" e_stop="80642"/>
          <exon e_start="79956" e_stop="79855"/>
          <exon e_start="79632" e_stop="79489"/>
          <exon e_start="78925" e_stop="78831"/>
          <exon e_start="78748" e_stop="78619"/>
          <exon e_start="78541" e_stop="78529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGTTGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGTTGAACTACACTTAAAGGTAGGTTCTTTTATTGCTGTATGTTTTGTTTTTGATCTTATTGTTCTACTACAATGGTGTCTTGTTAGCTTCTGATTATGGATAGTTGTAATAGTTTCAATTAGCTAGTAAAAGGGCAGTCCGGGGCACTAAACTCTCGCTATCGCAGGGTTCGGGGAAGGGTCTATTGTATGCAACCTTATCCATTTCTGTAAGAGACTGTTCTCATGGCTGGAATACATGACCTAGTTTCAATTAGCTAGTATTCCCATCAAATCATAGTGTGTCAAAGTTTATCTCTCCAATATTCTGTTTTTCAGAACCATATGATTGTATATAGTCCTATCCATTCTTCTGTTTTATGTTCTTTAAACAACTCCAATTATCATTTGAATCCCAGTTCAGTTTCATCAGACAGTAACTGTTATTTAACGATCTTTTGAGAATTCAAATTTGGTGTTCATTGAATCAGAAAATTCTTGTCAAGGAGTATCTGATTTTGTTGGTCTTTGACATATAATAATAATTAAGAATCTGATACTTTAAAACCTTAAGGATGTTGTACAATAAATTAGTCAAAAAGACAAATGACAAATAGTAGGTGGTGACAATTGTCATCATGTATCCATTTTAGTATCTTTATGAGTTTGCCTTGATGATCTCAGTGTTAATCTCTTGATTGATATATGCATTCCCTATTTTGCAGCTGCTTAAGGATTTCCCAAGAGATCTGGTCACGGTAAAGCGCGCTCAAGTGCTCTCTTTCTACATGGGTCGCCCTGATTTGTCTCTGAAACTTGTTGAACAGGTTCATACCATATTGACTAAATATTGCCTTGACTTCTTCCTCTCCTAGACAACTTAAGAAACAAAATCAATAAAATAAATATGTAATAACTTGTATTAGACATTATATCTGGAGGTTGAGTATCCATAATAGGAGTGACTAATGTGGTCATTTCTTTAAAAGTGAGTTTCGATTCCTTTTATGCAATTATTCCTAGTAAAGTTTCTTGATTTTGTCCTACAGGTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCTGTGAGTTACTCCTGTTTGCAAGTTACTCTTTCCTTTCTAGCTGATACAAACACATTTGTGGTATTATATGTGCTTGAATTTACTCTGCAAAATTTATCAACTATAACTATTTCTATGCCTCACTACCAAACTAGTTGGATTGGCTCCGCCAAAAAGCTTGTTTATCCCTATATTTCCATATAAGCATCCAAACCAGAAAGTGGTTACAAAGGTTGCTGGCAAACACCAGACCAAGCTCGTGAAAATCTTCTGCACAGAACAAACCGTGTAATTGTACCATTAACCTCTATCCCAACTAGTGAAATATCCATTGCACATTACAAACTTTTAATTGCTAGTCCAGTCATCATAATACTACAGATAGTTAACAAAGGTCCCATTTGAGGGAATCTCTTCCTATTGTTTTATCCTAGGAGAAAAAGAATAAGCATGGACATAATTTTTTATTGTGATGGAATTGGCGGTGTAGTTTGTATCATTTTGTCGGAGGAAATGCATTTTATTCATTCACTGATATTCTAGCATCCTATTTTTTTGCTTATTTTATCACAATCTCCTTGCAGCTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTATGTATGCGCAGAATCTGATAAAAGCACTCCTAGTTCGGCTCTGAATATAGTATTTTTAAAAGCTAACCATTAGGATATTGCAGGTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGT-TTAGCCGAAGTAAGTTAGTTGTTTGTAGTCAAAGAGCATTTTAGTTCTTTAAATATGCTGAGAGTTACATTTTTCTTGGTATGCAGGTGTACTTGAATG</genome_strand>
        <mrna_strand>ATTTTGGCTGCTCATTTTCTTTGCTCTGCTGATTCTTCGCGTGCTATGCTACTTTTTGAAGCTGCCAAGTCTTGTCTA....................................................................................GAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGCAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGTTGAACTACACTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTAAGGATTTCCCAAGAGATCTGATTACGCTAAAGCGAGCTCAAGTGCTCTCTTTCTACATGGGTCGCCCTGATTTGTCTCTGAAACTTGTTGAACAG..............................................................................................................................................................................................................................GTCCTACCAGTAAATAAACACGAAAGTTACATTTATGGCATGCTCGCGTTTGCCCTATTAGAGCTTGGTCGATATGTGGAGGCAAAAGAAGCTGCAAATAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTAT..................................................................................GTATACACACAATTGGTGGCACGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGT-AGAGATGTTTATGATCAAAACATCTGGAAAGAGCTGGAAAGAATTGATGCTAGTCCCATCTGAA.............................................................................GTGTACTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260214" ref_strand="+" ref_description="SGN-E260214 [cLEG-53-K7]">
      <seq>ctggacacaccatgctctctgtcatgtttatcagtatgagtgtcgttttaaagaagcagtacaatttatggaggagtgctcaagaacctggagttctttgtcatcttttatgtatacacacaattggtggcatgttgcgctttgttatatggaaggtaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="79225" stop="78398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78925" g_stop="78831" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="111" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78830" i_stop="78749" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78748" g_stop="78698" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="162" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E260214" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78925" e_stop="78831"/>
          <exon e_start="78748" e_stop="78698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTATGTATGCGCAGAATCTGATAAAAGCACTCCTAGTTCGGCTCTGAATATAGTATTTTTAAAAGCTAACCATTAGGATATTGCAGGTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTC</genome_strand>
        <mrna_strand>CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTAT..................................................................................GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469648" ref_strand="+" ref_description="SGN-E469648 [cSTB-12-L16]">
      <seq>tttctatatacaaaaaaatcaccaaaatcaagaacaagaagaacccaccaacttcaagaaaatggaagaattcaaagtagacaaatggggttatcaagtgaagactagttctgattcttgcatatctgccatcaattcttactatcatcaggtacttagctatggaagagagaggccagttatattggaagctcctaaacaagacccaacttgtgttttggctaatattttggctgctcattttctttgctctgctgattcttcgcgtgctatgctactttttgaagctgccaagtcttgtctagaacaagctagcttgtatgagaaagtggtttttgaggcagtaagttatttgattttacctaatagagatgatgatgtggctgttgaactacacttaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="81561" stop="80340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81225" g_stop="81113" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="151" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81112" i_stop="80978" i_length="135">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80977" g_stop="80825" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="304" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80824" i_stop="80741" i_length="84">
            <donor d_prob="0.853" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80740" g_stop="80642" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="403" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E469648" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81225" e_stop="81113"/>
          <exon e_start="80977" e_stop="80825"/>
          <exon e_start="80740" e_stop="80642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAGGTACCTTTTTCATATTTTCTTGATTTTTATCAGTATGAGTAAAAAAGATCAGATTTTTATCAGTATTGAGTAGAAAGATTAGATTTTTATTGATTTTGGGTTTATGTGAACTTTGATTCTTGAGGTTTGGTTTAGGTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGTTGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGTTGAACTACACTTAAAG</genome_strand>
        <mrna_strand>AAGAACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATCAATTCTTACTATCATCAG.......................................................................................................................................GTACTTAGCTATGGAAGAGAGAGGCCAGTTATATTGGAAGCTCCTAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGCTCTGCTGATTCTTCGCGTGCTATGCTACTTTTTGAAGCTGCCAAGTCTTGTCTA....................................................................................GAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGCAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGTTGAACTACACTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310365" ref_strand="+" ref_description="SGN-E310365 [cTOA-1-K16]">
      <seq>aacccaccaacttcaagaaaatggaagaattcaaagtagacaaatggggttatcaagtgaagactagttctgattcttgcatatctgccattaattcttattatcatcaggtacttagctatggaagagagaggtcagttatattggaagctccaaaacaagacccaacttgtgttttggctaatattttggctgctcattttctttgttctgctgattcttcgcgtgctatgccacttcttgaagctgccaagtcttgtctagtacaaattttgcaactttttggtttgtatttttgtatttgggagtttggttttgcttatttgatgttaattttctttgtttaggaacaagctagcttgtatgagaaagtggtttttgaggtagtaagttatttgattttacctaatacagatgatgatgtggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="81522" stop="80358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81222" g_stop="81113" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81112" i_stop="80978" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80977" g_stop="80658" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="430" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E310365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81222" e_stop="81113"/>
          <exon e_start="80977" e_stop="80658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAGGTACCTTTTTCATATTTTCTTGATTTTTATCAGTATGAGTAAAAAAGATCAGATTTTTATCAGTATTGAGTAGAAAGATTAGATTTTTATTGATTTTGGGTTTATGTGAACTTTGATTCTTGAGGTTTGGTTTAGGTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGTTGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGT</genome_strand>
        <mrna_strand>AACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAG.......................................................................................................................................GTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGATGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATACAGATGATGATGTGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476970" ref_strand="+" ref_description="SGN-E476970 [cSTB-46-F14]">
      <seq>ccaacttcaagaaaatggaagaattcaaagtagacaaatggggttatcaagtgaagactagttctggttcttgcgtatctgccatcaattcttactatcatcaggtacttagctatggaagagagaggtcagttatattggaagctcctaaacaagacccaacttgtgtttcggctaatattttggctgctcattttctttgctctgctgatacttcccgtgctatgctacttcttgaagctgccaagtcttgtctagaacaagctagcttgtatgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="81516" stop="80417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81216" g_stop="81113" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81112" i_stop="80978" i_length="135">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80977" g_stop="80825" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="257" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80824" i_stop="80741" i_length="84">
            <donor d_prob="0.853" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80740" g_stop="80717" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="281" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E476970" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81216" e_stop="81113"/>
          <exon e_start="80977" e_stop="80825"/>
          <exon e_start="80740" e_stop="80717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAGGTACCTTTTTCATATTTTCTTGATTTTTATCAGTATGAGTAAAAAAGATCAGATTTTTATCAGTATTGAGTAGAAAGATTAGATTTTTATTGATTTTGGGTTTATGTGAACTTTGATTCTTGAGGTTTGGTTTAGGTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGTTGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAA</genome_strand>
        <mrna_strand>CCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGGTTCTTGCGTATCTGCCATCAATTCTTACTATCATCAG.......................................................................................................................................GTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCTAAACAAGACCCAACTTGTGTTTCGGCTAATATTTTGGCTGCTCATTTTCTTTGCTCTGCTGATACTTCCCGTGCTATGCTACTTCTTGAAGCTGCCAAGTCTTGTCTA....................................................................................GAACAAGCTAGCTTGTATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548859" ref_strand="+" ref_description="SGN-E548859 [TUS-65-B7]">
      <seq>actctgcttattagtcattctttcaatatttgttgttgaagaagctagtcatggcaacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaagcagctatggtggagaaaatttctgaagggactttgctgctggaggaagcttttatcaacatgagcaaaggtaaatcttactttggtggagatagtattggttatgttgacattgtttttggtagtttactcggatgggttaaggtaatcgagatcgtggatgaattgaagatactagacgaaacaaagacgcctagcctagctgaatgggatgagaaattttgctcgcacaatgtcgtaaaggatatcattccagagactgaaaaacttgtgggaatttatcacaagtatgtcgagttgaagaaagctaacttgagttgataatgttgctgatttttctttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85073" stop="83464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84773" g_stop="84406" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="83764" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="765" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E548859" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84773" e_stop="84406"/>
          <exon e_start="84160" e_stop="83764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATTGTTTTTGGTAGTTTACTCGGATGGGTTAAGGTAATCGAGATCGTGGATGAATTGAAGATACTAGACGAAACAAAGACGCCTAGCCTAGCTGAATGGGATGAGAAATTTTGCTCGCACAATGTCGTAAAGGATATCATTCCAGAGACTGAAAAACTTGTGGAAATTTATCACAAGTATGTCGAGTTGAAGAAAGCTAACTTGAGTTGATAATGTTGCTGATTTTTCTTTATCT</genome_strand>
        <mrna_strand>ACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATTGTTTTTGGTAGTTTACTCGGATGGGTTAAGGTAATCGAGATCGTGGATGAATTGAAGATACTAGACGAAACAAAGACGCCTAGCCTAGCTGAATGGGATGAGAAATTTTGCTCGCACAATGTCGTAAAGGATATCATTCCAGAGACTGAAAAACTTGTGGGAATTTATCACAAGTATGTCGAGTTGAAGAAAGCTAACTTGAGTTGATAATGTTGCTGATTTTTCTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308795" ref_strand="+" ref_description="SGN-E308795 [cLEZ-14-L11]">
      <seq>aacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaagcagctatggtggagaaaatttctgaagggactttgctgctggaggaagcttttatcaacatgagcaaaggtaaatcttactttggtggagatagtattggttatgttgacattgtttttggtaagttactcggatgggttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85018" stop="83666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84718" g_stop="84406" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="83966" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="508" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E308795" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84718" e_stop="84406"/>
          <exon e_start="84160" e_stop="83966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATTGTTTTTGGTAGTTTACTCGGATGGGTTAAG</genome_strand>
        <mrna_strand>AACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATTGTTTTTGGTAAGTTACTCGGATGGGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309169" ref_strand="+" ref_description="SGN-E309169 [cLEZ-12-E9]">
      <seq>ctcgtgccgaattcggcacgagggcaagaagcatcaaaaactctgcttattagtcattctttcaatatttgttgttgaagaagctagtcatggcaacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaacagctatggtggagaaaatttctgaagggactttgctgctggaggaagcttttatcaacatgagcaaaggtaaatcttactttggtggagatagtattggttatgttgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85091" stop="83696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84789" g_stop="84406" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="407" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="83996" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="571" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E309169" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84789" e_stop="84406"/>
          <exon e_start="84160" e_stop="83996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATT</genome_strand>
        <mrna_strand>GCAAGAAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAA-CAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306458" ref_strand="+" ref_description="SGN-E306458 [cLEX-13-I3]">
      <seq>agaagcatcaaaaactctgcttattagtcattctttcaatatttgttgttgaagaagctagtcatggcaacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaagcagctatggtggagaaaatttctgaagggactttgctgctggaggaagcttttatcaacatgagcaaaggtaaatcttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85086" stop="83727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84786" g_stop="84406" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="84027" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="515" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E306458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84786" e_stop="84406"/>
          <exon e_start="84160" e_stop="84027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTT</genome_strand>
        <mrna_strand>AGAAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303268" ref_strand="+" ref_description="SGN-E303268 [cLEX-5-L21]">
      <seq>ctctgcttattagtcattctttcaatatttgttgttgaagaagctagtcatggcaacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaagcagctatggtggagaaaatttctgaagggactttgctgctggaggaagcttttatcaacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85072" stop="83745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84772" g_stop="84406" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="84045" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="483" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E303268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84772" e_stop="84406"/>
          <exon e_start="84160" e_stop="84045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAG</genome_strand>
        <mrna_strand>CTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310687" ref_strand="+" ref_description="SGN-E310687 [cLEZ-15-A17]">
      <seq>aagcatcaaaaactctgcttattagtcattctttcaatatttgttgttgaagaagctagtcatggcaacaaatagtgtaaagcttctaggtacatgggcatgcccgtatgtgtatcgcgttgaaatagccctcaagatgaagtctattgagtatgagtttatacaagaacgtgtgtttaacaaaagtgagttgcttctcaaatccaatcctgtttacaagaaaatcccagttctgttccacgacgagaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagcttggcttaatggtcccgccattcttccttctgatccctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtatccattggtagcggattataggaacgtggaaggaaaggaagcaaaagcaactatggtggagaaaatttctgaagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="85084" stop="83778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84784" g_stop="84406" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84160" g_stop="84078" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="462" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E310687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84784" e_stop="84406"/>
          <exon e_start="84160" e_stop="84078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTAAACACCTAAACTTCATTTGCAACTTATAAGAAACAACCTCTCTATCTCTAACGTAGAGGTAAGGTTTGTTTACACTCTACCCTCCTCAGACCCCACTTTGTGAGACTACAGTATGTTGTAGTTGAATTTGTAACTACTAAGCTTGATATGTTGTTTGTGGTTAATTTCACGTATGATCACTGAACGTTACCATGCTTGAAAAGTCGTTTAGATGAGTAGTTAACTTCATCAAATGGTTGCAGTGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGAC</genome_strand>
        <mrna_strand>AAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG.....................................................................................................................................................................................................................................................TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAACTATGGTGGAGAAAATTTCTGAAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732086" ref_strand="+" ref_description="SGN-E732086 [LB01BA02]">
      <seq>caggtatcatggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaaactactaagaaatgagtactatgaagccnagatctactatttataggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87550" stop="85205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87248" g_stop="86956" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="297" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85510" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="821" r_length="524" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="838"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E732086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87248" e_stop="86956"/>
          <exon e_start="86033" e_stop="85510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</genome_strand>
        <mrna_strand>TATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCNAGATCTACTATTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540514" ref_strand="+" ref_description="SGN-E540514 [TUS-60-N8](-)">
      <seq>agttctaagagtgatcttctccttatatcaaatccagtttacaagaaaatcccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataaggtacacatctctcttttggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaaactactaagaaatgagtactatgaagccaagatctactatttataggttaatcgtttagtcttaaaaaaaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87462" stop="85190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87162" g_stop="86940" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86939" i_stop="86034" i_length="906">
            <donor d_prob="0.239" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85510" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="747" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E540514" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87162" e_stop="86940"/>
          <exon e_start="86033" e_stop="85510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</genome_strand>
        <mrna_strand>AGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATCCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549018" ref_strand="+" ref_description="SGN-E549018 [TUS-66-I19](-)">
      <seq>gatccatgacgaaaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagtttggattaatgatcccccggttcttccgtttgatctctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaaactactaagaaatgagtactatgaagccaagatctactatttataggttaaaaaaaaaaaaaaaaaggaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="86790" stop="81844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86490" g_stop="86346" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86345" i_stop="86034" i_length="312">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85510" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="669" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="690"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E549018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86490" e_stop="86346"/>
          <exon e_start="86033" e_stop="85510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</genome_strand>
        <mrna_strand>GATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG........................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712812" ref_strand="+" ref_description="SGN-E712812 [FB05DE11]">
      <seq>aaactattaggatcatggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaaactactaagaaatgagtactatgaagccaagatctactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87558" stop="85214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87258" g_stop="86956" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85514" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="823" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E712812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87258" e_stop="86956"/>
          <exon e_start="86033" e_stop="85514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTT</genome_strand>
        <mrna_strand>AAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544291" ref_strand="+" ref_description="SGN-E544291 [TUS-66-I19]">
      <seq>gtgtaaagcttctaggttcatgggcaagcccgtttgtgaaccgcgttgaactagctctcaagataaagtctattgagtatgagtttatacaacaaaatatgataaacaaaggtgagttgctccttaaatccaaccctgtatacgagaaaatccccgtcctgatccatgacgaaaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagtttggattaatgatcccccggttcttccgtttgatctctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaactactaagaaatgagtactatgaagccaagatctactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="86950" stop="85215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86650" g_stop="86346" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86345" i_stop="86034" i_length="312">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85515" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="823" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E544291" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86650" e_stop="86346"/>
          <exon e_start="86033" e_stop="85515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATT</genome_strand>
        <mrna_strand>GTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG........................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGT-AAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732462" ref_strand="+" ref_description="SGN-E732462 [LB02BA01]">
      <seq>gcgatactattaggatcatggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacatttggtattgtgtaaaaaactactaagaaatgagtactatgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87561" stop="85229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87261" g_stop="86956" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85529" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="811" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E732462" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87261" e_stop="86956"/>
          <exon e_start="86033" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGC</genome_strand>
        <mrna_strand>GCGATACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540517" ref_strand="+" ref_description="SGN-E540517 [TUS-60-N8]">
      <seq>ttaggatcatggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataaggtacacatctctcttttggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacaattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgctgaggctgctaagaaccttatacccaaaatcagagctaatgcatctagctaaatccacacgccacgtttagcctatgaagcctcgatatctattcttaatctctaaagtctagctaagaccatatatggaaataacattttggtattgtggtaaaaactactaagaaatgagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87552" stop="85235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87252" g_stop="86940" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86939" i_stop="86034" i_length="906">
            <donor d_prob="0.239" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85535" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="813" r_length="500" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E540517" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87252" e_stop="86940"/>
          <exon e_start="86033" e_stop="85535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACA-TTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTA</genome_strand>
        <mrna_strand>TTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTTGGTATTGTGGTAAAAACTACTAAGAAATGAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320739" ref_strand="+" ref_description="SGN-E320739 [cTOB-27-H20]">
      <seq>atgatgtgaaactattaggatcatggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttanngtggatganggtgatcgagaagatgaacaacgtcacactacttgatgaagccaagactccaggtttatacnattgggctgaagatttttgtgctgatagttctgtcaaagatgtcatgcctgaaactaataagcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87566" stop="85410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87266" g_stop="86956" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85710" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="635" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E320739" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87266" e_stop="86956"/>
          <exon e_start="86033" e_stop="85710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTGAAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCT</genome_strand>
        <mrna_strand>ATGATGTGAAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTANNGTGGATGANGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACNATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307356" ref_strand="+" ref_description="SGN-E307356 [cLEY-12-N12]">
      <seq>tgtaaagcttctaggttcatgggcaagcccgtttgtgaaccgcgttgaactagctctcaagataaagtctattgagtatgagtttatacaacaaaatatgataaacaaaggtgagttgctccttaaatccaaccctgtatacgagaaaatccccgtcctgatccatgacgaaaagcctatctgtgagtcccttgtcatccttcagtacatcgatgaagtttggattaatgatcccccggttcttccgtttgatctctatgatcgtgccatagcacgattttgggcagcctatatagatgaaaagtggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaaacagcactagagccagtgttcgacggtctggtgttgttggaagacgccttcaagaattgcagcaaaggaaagaagttctttggcggagacaaaattggatacgtggacattgcacttggatgcttcttaggttggatgagggtgatcgagaagatgaacaacgtcacactacttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="86949" stop="85501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86649" g_stop="86346" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86345" i_stop="86034" i_length="312">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85801" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="537" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E307356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86649" e_stop="86346"/>
          <exon e_start="86033" e_stop="85801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGA</genome_strand>
        <mrna_strand>TGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG........................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287893" ref_strand="+" ref_description="SGN-E287893 [cLES-19-H1]">
      <seq>gatcatggcctagtacatttggtatgaggcctcgtatctcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatatcgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataaggtacacatctatcttttggtttccattattacgttcctttgcggttgcccaaggagaggatgccattgaaacatcactagagccagtgttcgacggtctggtgatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87548" stop="85639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87248" g_stop="86940" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86939" i_stop="86034" i_length="906">
            <donor d_prob="0.239" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85939" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="404" r_length="95" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E287893" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87248" e_stop="86940"/>
          <exon e_start="86033" e_stop="85939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGA</genome_strand>
        <mrna_strand>GATCATGGCCTAGTACATTTGGTATGAGGCCTCGTATCTCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATCGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTATCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTACGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATTGAAACATCACTAGAGCCAGTGTTCGACGGTCTGGTGATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697556" ref_strand="+" ref_description="SGN-E697556 [FA03BD11]">
      <seq>aatgatgtgaaactattaggatcatggcctagtacctttgttatgaggcctcgtatcgcgcttaacgtaaaatcgctgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgattttgggcatgttatattgacgataactggtttccattattccgttcctttgcggttgcccaaggagaggatgccataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87567" stop="85680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87267" g_stop="86956" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86033" g_stop="85980" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="366" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E697556" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87267" e_stop="86956"/>
          <exon e_start="86033" e_stop="85980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGTGAAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTTGTAAGTACTGTAAAAGCTTAAGTTATTAGAGAGAACACTTCAAATTCAATTATCTTTGATGTGTATACAGTGGCGTATCCAGAATTTTAAATTAATGGGTGCTTGATAGTTAAAGCATAGTACAGCACGTTGATCGATCCCACCTATAATATTGTTTATATATTTGGTAGTTAGGACAAACCAGCATAATTTACTAGATAGAACTTATGTGCAAGAAGCATCAAAAACTCTTCTTATTAATCATAACTTCAATATTAGTTGTCGAGGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAGGTGAAGACTATATTTCATATCACTATCTCGTTGTAGGACTAGTATGTCTCGAAAATTCCTCTTACATGTTGTAGTGTCCAATTCTTTGGCGGTGGAAACTCTAATACCATGTTGAGATTGTGTGATCGTGTAATCTAAAATCTTAAGGTATTAGGAATAGAACATTTCTAATTGCTTGTTCACGCTCCAGATGTTCAGTCTTGAACGTGTGCTAGAGAGTGTTAAGAGTCTCACATTTGTTAAGAGAAAAAGTTGTCGTCATGAGCTAGCTGAGGCCTATTTCCTTAACAAACATTTTTATTGATGCTGCAGTGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAA</genome_strand>
        <mrna_strand>AATGATGTGAAACTATTAGGATCATGGCCTAGTACCTTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCGCTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289725" ref_strand="+" ref_description="SGN-E289725 [cLET-4-H19]">
      <seq>catggcctagtacatttgttatgaggcctcgtatcgcgcttaacgtaaaatcagtgtgttatgatttcttggaggaacagttaagttctaagagtgatcttctccttatatcaaatccagtttacaagaaaattccagttctaattcatgatgggaagtccatttgtgaatcactcaacattgttcagtatattgatgaaaaatggactaattctggtccctctattctccccttggatccttatgatcgtgccattgctcgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="87545" stop="86679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87245" g_stop="86979" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E289725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87245" e_stop="86979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTT</genome_strand>
        <mrna_strand>CATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403729" ref_strand="+" ref_description="SGN-E403729 [PPC-11-F15]">
      <seq>tttgatcatggctagaaatgatttgaaaatattaggagcatggcctagtccatatgtcatgaggactcgtattgctcttaacatcaaatctttggcctatgatttcttggaggaacaatttggtactaaaagtgaacttttacttaaatcaaatccaatttacaagaaaattccagttctaattcatgatggaaagcccatttgtgaatctcttattattgttcaatatattgatgaaaattggactaattttggtcattctattcttccctctcatccttatgatcgtgccattgcaagattttgggcatcttacattgatgataagtggtttccagcactgcgtggcgtggcagcaacacaagaagagaacgcaaaaaaggcagcaacagagactgtgatcgaaggcctagtgttgttggaagatgtcttcaagaattgcagcaaaggcaagaagttctttggtggagacaaaatcggatacttggacattgcacttggttgcttcttgggttggctgaaggtgaacgagaaattaaacaacgtaaatctgcttgatgaatccaaaactccgggtttatacaaatgggctgaagattttgtggtgatagtgttgtcaaagatgtcatgccctgaactgataagcttgctcaggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="89656" stop="87417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89356" g_stop="89029" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89028" i_stop="88049" i_length="980">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88048" g_stop="87716" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="660" r_length="332" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E403729" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89356" e_stop="89029"/>
          <exon e_start="88048" e_stop="87716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATGGCTAAAAATAATTTGAAAATATTAGGAGCATGGCCTAGTCCATATGTTATGAGGCCTCGTATTGCTCTTAACATCAAATGTTTAGCCTATGATTTCTTAGAAGAACAATTTGGTACAAAAAGTGAACTTTTACTTAAATCAAATCCAATTTACAAAAAAATTCCAGTTCTAATTCATGATGGAAAACCTATTTGTGAATCTTTAATTATTGTTCAATATATCGATGAAAATTGGACTAATTTTGGTCACTCTATTCTTCCTTCTCATCCTTATGATCGTGCCATTGCAAGATTTTGGGCATTTTATATTGATGATAAGGTGTGTGCTTTCGTTAATTTTTAGTTTCATGTGTTCTCGAGCAGTGACATAGCTAGAATTTTGAGTTTATGCGATTTGAATTCCAGAGAGAATCGATATAGTGAATTCTGGATATATTATTTAAACATATTAAGTAAATTTTAGAAGGTTTGACCCGTAGGGATTGTTGAACCTTTTTGTACATAATATATATATATAATGTTAAAATTATTTTTTGTTATCGTTTTTAAATTTTAGTTTTTTCCTAATTAAAAGGTAGAAAAATTGTTTCTGCTTCCATTTAAAAGCATTTGATTTTCCAAAAACTTCACTTCTCAACAAAAATGTTCTTTTTTTTTCCCTTCAAAATAAGTGTTTCTGACCTCCCAATAATTATGTCAAAAAGACGTTAAACCTATAAAAATGTCTTCTATAAATCACAATTTTATCATCGATTGTTAAATTGCTCGTAGTTAACAAAATTTTGTGTATGTCACGCTAAATAGAACTAGCGACATATTTTTGTTGTTTAAATGCATTAGTAATCACATTATTATGAAGAAAAAAAAAGTATAGTATTTCGATTTTCTAGTTAGAATTACCTGTAATGAAAGGGGTTCAATTGAATTCTGTTAGTTGTGAAATAGTATTGAACAAATATGTCAATAACAATCTTTCTTTTACGTGTATAAATTGTTGTATACTCTTGAAATGAGTTAATGTAATGGAAATCACATTAGAAATCATGACTCTGCCTCGAGTAGTATAGCATACTAAACATTTTACTCGATCCTGCTGTGGTTTCCAGCACTGTGTGGGGTTCAACTGAATTCTGTTCGTCGGGAAATAGTATTGAACAAATATGTCAATAACAATCTCTCTTTTATGTGTATGAACGGTTAAATACTCTTGATATTGAGTTAATGTAATGGAAATCACATTAGAAATCCTGACTCTGCCTCGTGTAGTATAACATACTAACATTTTACTCGGTCCTGCAGTGGTTTCCAGCACTGTGTGGTGTGGCAGCAGCACAAGACGAGGACGCGAAAAAGGCAGCAATGGAGACTGTGATTGAAGGCCTAGTGTTGTTAGAAGATGTCTTCAAGATTAACAGCAAAGGCAAGAAGTTCTTTGGTGGAGACAAAATCGGATACTTGGACATTGCACTTGGTTGTTTCTTGGGTTGGTTAAAGGTTAACGAGAAGTTGAACAACGTAAATCTCCTTGATGAATCCAGAACTCCGAGTTTATACCAATGGGCTAAAGATTTTTGTGTTGATAGCGTTGTCAAAGATGTCATGCCTGAAACTGATCAGCTTGTTCAGGCTGCA</genome_strand>
        <mrna_strand>TTTGATCATGGCTAGAAATGATTTGAAAATATTAGGAGCATGGCCTAGTCCATATGTCATGAGGACTCGTATTGCTCTTAACATCAAATCTTTGGCCTATGATTTCTTGGAGGAACAATTTGGTACTAAAAGTGAACTTTTACTTAAATCAAATCCAATTTACAAGAAAATTCCAGTTCTAATTCATGATGGAAAGCCCATTTGTGAATCTCTTATTATTGTTCAATATATTGATGAAAATTGGACTAATTTTGGTCATTCTATTCTTCCCTCTCATCCTTATGATCGTGCCATTGCAAGATTTTGGGCATCTTACATTGATGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCAGCACTGCGTGGCGTGGCAGCAACACAAGAAGAGAACGCAAAAAAGGCAGCAACAGAGACTGTGATCGAAGGCCTAGTGTTGTTGGAAGATGTCTTCAAGAATTGCAGCAAAGGCAAGAAGTTCTTTGGTGGAGACAAAATCGGATACTTGGACATTGCACTTGGTTGCTTCTTGGGTTGGCTGAAGGTGAACGAGAAATTAAACAACGTAAATCTGCTTGATGAATCCAAAACTCCGGGTTTATACAAATGGGCTGAAGA-TTTTGTGGTGATAGTGTTGTCAAAGATGTCATGCCCTGAACTGATAAGCTTGCTCAGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467248" ref_strand="+" ref_description="SGN-E467248 [cSTB-44-C3]">
      <seq>gaattcggcacgagggaaaatattaggagcatggcctagtccatatgtcatgaggactcgtattgctcttaacatcaaatctttggcctatgatttcttggaggaacaatttggtactaaaagtgaacttttacttaaatcaaatccaatttacaagaaaattccagttctaattcatgatggaaagcccatttgtgaatctcttattattgttcaatatattgatgaaaattggactaattttggtcattctattcttccctctcatccttatgatcgtgccattgcaagattttgggcatcttacattgatgataagtggtttccagcactgcgtggcgtggcagcaacacaagaagagaacgcaaaaaaggcagcaacagagactgtgatcgaaggcctagtgttgttggaagatgtcttcaagaattgcagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="89632" stop="87638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89321" g_stop="89029" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="319" r_length="293" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89028" i_stop="88049" i_length="980">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88048" g_stop="87930" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="438" r_length="119" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E467248" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89321" e_stop="89029"/>
          <exon e_start="88048" e_stop="87930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATGGCCTAGTCCATATGTTATGAGGCCTCGTATTGCTCTTAACATCAAATGTTTAGCCTATGATTTCTTAGAAGAACAATTTGGTACAAAAAGTGAACTTTTACTTAAATCAAATCCAATTTACAAAAAAATTCCAGTTCTAATTCATGATGGAAAACCTATTTGTGAATCTTTAATTATTGTTCAATATATCGATGAAAATTGGACTAATTTTGGTCACTCTATTCTTCCTTCTCATCCTTATGATCGTGCCATTGCAAGATTTTGGGCATTTTATATTGATGATAAGGTGTGTGCTTTCGTTAATTTTTAGTTTCATGTGTTCTCGAGCAGTGACATAGCTAGAATTTTGAGTTTATGCGATTTGAATTCCAGAGAGAATCGATATAGTGAATTCTGGATATATTATTTAAACATATTAAGTAAATTTTAGAAGGTTTGACCCGTAGGGATTGTTGAACCTTTTTGTACATAATATATATATATAATGTTAAAATTATTTTTTGTTATCGTTTTTAAATTTTAGTTTTTTCCTAATTAAAAGGTAGAAAAATTGTTTCTGCTTCCATTTAAAAGCATTTGATTTTCCAAAAACTTCACTTCTCAACAAAAATGTTCTTTTTTTTTCCCTTCAAAATAAGTGTTTCTGACCTCCCAATAATTATGTCAAAAAGACGTTAAACCTATAAAAATGTCTTCTATAAATCACAATTTTATCATCGATTGTTAAATTGCTCGTAGTTAACAAAATTTTGTGTATGTCACGCTAAATAGAACTAGCGACATATTTTTGTTGTTTAAATGCATTAGTAATCACATTATTATGAAGAAAAAAAAAGTATAGTATTTCGATTTTCTAGTTAGAATTACCTGTAATGAAAGGGGTTCAATTGAATTCTGTTAGTTGTGAAATAGTATTGAACAAATATGTCAATAACAATCTTTCTTTTACGTGTATAAATTGTTGTATACTCTTGAAATGAGTTAATGTAATGGAAATCACATTAGAAATCATGACTCTGCCTCGAGTAGTATAGCATACTAAACATTTTACTCGATCCTGCTGTGGTTTCCAGCACTGTGTGGGGTTCAACTGAATTCTGTTCGTCGGGAAATAGTATTGAACAAATATGTCAATAACAATCTCTCTTTTATGTGTATGAACGGTTAAATACTCTTGATATTGAGTTAATGTAATGGAAATCACATTAGAAATCCTGACTCTGCCTCGTGTAGTATAACATACTAACATTTTACTCGGTCCTGCAGTGGTTTCCAGCACTGTGTGGTGTGGCAGCAGCACAAGACGAGGACGCGAAAAAGGCAGCAATGGAGACTGTGATTGAAGGCCTAGTGTTGTTAGAAGATGTCTTCAAGATTAACAGCAA</genome_strand>
        <mrna_strand>GAGCATGGCCTAGTCCATATGTCATGAGGACTCGTATTGCTCTTAACATCAAATCTTTGGCCTATGATTTCTTGGAGGAACAATTTGGTACTAAAAGTGAACTTTTACTTAAATCAAATCCAATTTACAAGAAAATTCCAGTTCTAATTCATGATGGAAAGCCCATTTGTGAATCTCTTATTATTGTTCAATATATTGATGAAAATTGGACTAATTTTGGTCATTCTATTCTTCCCTCTCATCCTTATGATCGTGCCATTGCAAGATTTTGGGCATCTTACATTGATGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTCCAGCACTGCGTGGCGTGGCAGCAACACAAGAAGAGAACGCAAAAAAGGCAGCAACAGAGACTGTGATCGAAGGCCTAGTGTTGTTGGAAGATGTCTTCAAGAATTGCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227996" ref_strand="-" ref_description="SGN-E227996 [cLEL-39-N23](-)">
      <seq>ttttttttttttttttttgaattttacagttagatatatagaatggactgaaatgttgtgttcaaaaatgtatgaaaagtttaaaattaaagaattgcataaagactaaaatgaaagtcaaccaaaaaaaattaaaactaaaaattatattataagcagccatgccaataccattctgttgttgcagagttaagtgctaatgggactgcaccaaatccatcattggttggtttttcactcatttgtgtacttaaacagccaatctttgttggtctggttccttcgagcttataccagctctgataccatgttgaattacgtcaccacctccatttcaaaaggtttcattgcaagcaccatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="81844" stop="91261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90267" g_stop="90278" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90279" i_stop="90607" i_length="329">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90608" g_stop="90961" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="366" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E227996" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227996" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90267" e_stop="90278"/>
          <exon e_start="90608" e_stop="90961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTTTTTGGTATGCTTCATGGCCAAGAATTGAACACGTTAAAGTTGAAATTTGTGCTGTTTTTTATCTAGAAGAAGTGGGAACTTTTACGATTTTTTGATTTTCGATTTGATATTCGTATGAACGTCTGATTAAAGTTGAATTTGTGCATTACAAATTCATTTTTTGGCAATATTTTCGATTAGATTGTTTTCATGCTAACGCTAGAATAAAAGACGTTTGATTAAGAACACAAGGATTTCAACCATCACAGCACAATTTATGTTGGTTAAAAAAGTGAGACCTGATTATTGTTTGATTTATTGACTTGATATGAAATTTTAAAAAGTAAAAGAAAGATTTTTGAATTTTACAGTTAGATATATAGAATGGACTGAAATGTTGTGTTCAAAAATGTATGAAAAGTTTAAAATTAAAGAATTGCATAAAGACTAAAAAGAAAGTCAACCAAAAAAAATTAAAACTAAAAATTATATTATAAGCAGCCATGCCAATACCATTCTGTTGTTGCAGAGTTAAGTGCTAATGGGACTGCACCAAATCCATCATTGGTTGGTTTTTCACTCATTTGTGTACTTAAACAGCCAATCTTTGTTGGTCTGGTTCCTTCGAGCTTATACCAGCTCTGATACCATGTTGAATTACGTTACCACCTCCATTTCAAAAGGTTTCATTGCAAGCACCATATGTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................TTTTTTGAATTTTACAGTTAGATATATAGAATGGACTGAAATGTTGTGTTCAAAAATGTATGAAAAGTTTAAAATTAAAGAATTGCATAAAGACTAAAATGAAAGTCAACCAAAAAAAATTAAAACTAAAAATTATATTATAAGCAGCCATGCCAATACCATTCTGTTGTTGCAGAGTTAAGTGCTAATGGGACTGCACCAAATCCATCATTGGTTGGTTTTTCACTCATTTGTGTACTTAAACAGCCAATCTTTGTTGGTCTGGTTCCTTCGAGCTTATACCAGCTCTGATACCATGTTGAATTACGTCACCACCTCCATTTCAAAAGGTTTCATTGCAAGCACCATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538507" ref_strand="+" ref_description="SGN-E538507 [TUS-57-M5](-)">
      <seq>atacatgctccatccatagtttctcccttttgtgatgatgtcaactttttcatactgatcctgcatgattcaaatgattttcagaaactcacgtcaagataccaggtagcatgttatgtctgttgacaagatcttaaccaacagagatataataggtctcaacaaaaatgagattgtcaatgaacctggccaacatctgcacagatgaatttcgaaggcctttctgaatcaaagctacagcgccaagggtctctcagtccaaacgcccagatttcaggctgcaaatccttattttgtgaataaggattatctcgaggaaccgaatagttaccccaatgtccaaggtctgcaacatatggtgcttgcaatgaaaccttttgaaatggaggtggtaacgtaattcaacatggtatcagagctggtataagctcgaaggaaccagaccaacaaagattggctgtttaagtacacaaatgagtgaaaaaccaaccaatgatggatttggtgcagtcccattagcacttaactctgcaacaacagaatggtattggcatggctgcttataatataatttttagttttaattttttttggttgactttctttttagtctttatgcaattctttaattttaaacttttcatacatttttgaacacaacatttcagtccattctatatatctaactgtaaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="91610" stop="90309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91310" g_stop="90623" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="706"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E538507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91310" e_stop="90623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATGCTCCATCCATAGTTTCCTCCTTTTGTGATGATGTCAACTTCTTCATACTGATCCTGCATGATTCAAATGATTTTCAGAAACTCACGTCAAGATACCAGGTAGCATGTTATGTCTGTTGACAAGATCTTAACCAACAGAGATATAATAGGTCTCAACAAAAATGAGATTGTCAATGAACCTGGCCAACATCTGCACAGATGAATTTCGAAGGCCTTTCTGAATCAAAGCTACAGCGCCAAGGGTCTCTCAGTCCAAACGCCCAGATTTCAGGCTGCAAATCCTTATTTTGTGAATAAGGATTATCTCGAGGAACCGAATAGTTACCCCAATGTCCAAGGTCTGCAACATATGGTGCTTGCAATGAAACCTTTTGAAATGGAGGTGGTAACGTAATTCAACATGGTATCAGAGCTGGTATAAGCTCGAAGGAACCAGACCAACAAAGATTGGCTGTTTAAGTACACAAATGAGTGAAAAACCAACCAATGATGGATTTGGTGCAGTCCCATTAGCACTTAACTCTGCAACAACAGAATGGTATTGGCATGGCTGCTTATAATATAATTTTTAGTTTTAATTTTTTTTGGTTGACTTTCTTTTTAGTCTTTATGCAATTCTTTAATTTTAAACTTTTCATACATTTTTGAACACAACATTTCAGTCCATTCTATATATCTAACT</genome_strand>
        <mrna_strand>ATACATGCTCCATCCATAGTTTCTCCCTTTTGTGATGATGTCAACTTTTTCATACTGATCCTGCATGATTCAAATGATTTTCAGAAACTCACGTCAAGATACCAGGTAGCATGTTATGTCTGTTGACAAGATCTTAACCAACAGAGATATAATAGGTCTCAACAAAAATGAGATTGTCAATGAACCTGGCCAACATCTGCACAGATGAATTTCGAAGGCCTTTCTGAATCAAAGCTACAGCGCCAAGGGTCTCTCAGTCCAAACGCCCAGATTTCAGGCTGCAAATCCTTATTTTGTGAATAAGGATTATCTCGAGGAACCGAATAGTTACCCCAATGTCCAAGGTCTGCAACATATGGTGCTTGCAATGAAACCTTTTGAAATGGAGGTGGTAACGTAATTCAACATGGTATCAGAGCTGGTATAAGCTCGAAGGAACCAGACCAACAAAGATTGGCTGTTTAAGTACACAAATGAGTGAAAAACCAACCAATGATGGATTTGGTGCAGTCCCATTAGCACTTAACTCTGCAACAACAGAATGGTATTGGCATGGCTGCTTATAATATAATTTTTAGTTTTAATTTTTTTTGGTTGACTTTCTTTTTAGTCTTTATGCAATTCTTTAATTTTAAACTTTTCATACATTTTTGAACACAACATTTCAGTCCATTCTATATATCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538512" ref_strand="+" ref_description="SGN-E538512 [TUS-57-M9](-)">
      <seq>cgtcaagataccaggtagcatgttatgtctgttgacaagatcttaaccaacagagatataataggtctcaacaaaaatgagattgtcaatgaacctggccaacatctgcacagatgaatttcgaaggcctttctgaatcaaagctacagcgccaagggtctctcagtccaaacgcccagatttcaggctgcaaatccttattttgtgaataaggattatctcgaggaaccgaatagttaccccaatgtccaaggtctgcaacatatggtgcttgcaatgaaaccttttgaaatggaggtggtaacgtaattcaacatggtatcagagctggtataagctcgaaggaaccagaccaacaaagattggctgtttaagtacacaaatgagtgaaaaaccaaccaatgatggatttggtgcagtcccattagcacttaactctgcaacaacagaatggtattggcatggctgcttataatataatttttagttttaattttttttggttgactttctttttagtctttatgcaattctttaattttaaacttttcatacatttttgaacacaacatttcagtccattctatatatctaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="91519" stop="90321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91219" g_stop="90623" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E538512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91219" e_stop="90623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAAGATACCAGGTAGCATGTTATGTCTGTTGACAAGATCTTAACCAACAGAGATATAATAGGTCTCAACAAAAATGAGATTGTCAATGAACCTGGCCAACATCTGCACAGATGAATTTCGAAGGCCTTTCTGAATCAAAGCTACAGCGCCAAGGGTCTCTCAGTCCAAACGCCCAGATTTCAGGCTGCAAATCCTTATTTTGTGAATAAGGATTATCTCGAGGAACCGAATAGTTACCCCAATGTCCAAGGTCTGCAACATATGGTGCTTGCAATGAAACCTTTTGAAATGGAGGTGGTAACGTAATTCAACATGGTATCAGAGCTGGTATAAGCTCGAAGGAACCAGACCAACAAAGATTGGCTGTTTAAGTACACAAATGAGTGAAAAACCAACCAATGATGGATTTGGTGCAGTCCCATTAGCACTTAACTCTGCAACAACAGAATGGTATTGGCATGGCTGCTTATAATATAATTTTTAGTTTTAATTTTTTTTGGTTGACTTTCTTTTTAGTCTTTATGCAATTCTTTAATTTTAAACTTTTCATACATTTTTGAACACAACATTTCAGTCCATTCTATATATCTAACT</genome_strand>
        <mrna_strand>CGTCAAGATACCAGGTAGCATGTTATGTCTGTTGACAAGATCTTAACCAACAGAGATATAATAGGTCTCAACAAAAATGAGATTGTCAATGAACCTGGCCAACATCTGCACAGATGAATTTCGAAGGCCTTTCTGAATCAAAGCTACAGCGCCAAGGGTCTCTCAGTCCAAACGCCCAGATTTCAGGCTGCAAATCCTTATTTTGTGAATAAGGATTATCTCGAGGAACCGAATAGTTACCCCAATGTCCAAGGTCTGCAACATATGGTGCTTGCAATGAAACCTTTTGAAATGGAGGTGGTAACGTAATTCAACATGGTATCAGAGCTGGTATAAGCTCGAAGGAACCAGACCAACAAAGATTGGCTGTTTAAGTACACAAATGAGTGAAAAACCAACCAATGATGGATTTGGTGCAGTCCCATTAGCACTTAACTCTGCAACAACAGAATGGTATTGGCATGGCTGCTTATAATATAATTTTTAGTTTTAATTTTTTTTGGTTGACTTTCTTTTTAGTCTTTATGCAATTCTTTAATTTTAAACTTTTCATACATTTTTGAACACAACATTTCAGTCCATTCTATATATCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245712" ref_strand="+" ref_description="SGN-E245712 [cLEF-48-E6]">
      <seq>tagtcaaaagcagcagacagtaaagaacaaggaccgagccagagatctgctttagcaacgtgaccatctgaaggtgcagagggacctgggctctcagcagtccttgctatctccatcgggcaagtgtagttgcagcgacttggaccaaccactctgtatacaccggtgcttgttaaaacaaaggtatccttcctgttatcctgtcccaacgagaatatgccacctaaagcaggcaatggactattgggaactgagctgcaattgagaggggaatcatgagcacaactgaaagaaatgcctcttgctgtaaagttcccactgttatacggattttcttgagctgcccaaaagttcttagcatacaaatctccatagagggatcagtcttggagcgataaacatagccacctgatatggctgcacatccaacttctttatttatatcagaatggcggtatcctaacactgggaatatgggatcctcgaaatcaccagctgaagcatttttcaagcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="92233" stop="91020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91933" g_stop="91558" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91557" i_stop="91460" i_length="98">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91459" g_stop="91320" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="517" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E245712" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91933" e_stop="91558"/>
          <exon e_start="91459" e_stop="91320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCAAAAGCAGCAGACAGTAAAGAACAAGGACCGAG-CAGAGATCTGCTTTAGCAACGTGACCATCTGAAGGTGCAGAGGGACCTGGGCTCTCAGCAGTCCTTGCTATCTCCATCGGGCAAGTGTAGTTGCAGCGACTTGGACGAACCACTCTGTATACACCGGTGCTTGTTAAAACAAAGGTATCCTTCCTGTTATCCTGTCCAAACGAGAATATGCAACCTAAAGCAGGCAATGGACTATTGGGAACTGAGCTGCAATTGAGAGGGGAATCATGAGCACAACTGAAAGAAATGCCTCTTGCTGTAAAGTTCCCACTGTTATACGGATTTTCTTGAGCTGCCCAAAAGTTCTTAGCATACAAATCTCCATAGAGGTAACTGCAAATGCAACCATCCTTCTATTAAGTTGTGTTCACTAATGTACAATTTTTATATCGACAAGGGTGTTCATATTTACCTTCCATATATGCAGGGATCAGTCTTGGAGCGATAAACATAGCCACCTGATATGGCTGCACATCCAACTTCTTTATTTATATCAGAATGGCGGTATCCTAACACTGGGAATATGGGATCCTCGAAATCACCAGCTGAAGCATTTTTCAAGCGTGA</genome_strand>
        <mrna_strand>TAGTCAAAAGCAGCAGACAGTAAAGAACAAGGACCGAGCCAGAGATCTGCTTTAGCAACGTGACCATCTGAAGGTGCAGAGGGACCTGGGCTCTCAGCAGTCCTTGCTATCTCCATCGGGCAAGTGTAGTTGCAGCGACTTGGACCAACCACTCTGTATACACCGGTGCTTGTTAAAACAAAGGTATCCTTCCTGTTATCCTGTCCCAACGAGAATATGCCACCTAAAGCAGGCAATGGACTATTGGGAACTGAGCTGCAATTGAGAGGGGAATCATGAGCACAACTGAAAGAAATGCCTCTTGCTGTAAAGTTCCCACTGTTATACGGATTTTCTTGAGCTGCCCAAAAGTTCTTAGCATACAAATCTCCATAGAG..................................................................................................GGATCAGTCTTGGAGCGATAAACATAGCCACCTGATATGGCTGCACATCCAACTTCTTTATTTATATCAGAATGGCGGTATCCTAACACTGGGAATATGGGATCCTCGAAATCACCAGCTGAAGCATTTTTCAAGCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442465" ref_strand="-" ref_description="SGN-E442465 [cSTA-33-J11]">
      <seq>agatttgtatgctaagaacttttgggcagctcaagaaaatccgtataacagtgggaactttacagcaagaagcatccgtttcagttgtgctcatgattcccctctcaattgcagctcagttcccaatagtccattgcctgctttaggttacatattctcatttggacaggataacaggaaggatacctatattttaacaagcaccggtgtatacagagtggttcgtccaagtcgctgcaagtacacttgctcgatggagacagcaaggactgctgagacaccacttccctctgcaccttcagatggtcacattgctaaagcagatctctactcggtccttcttctttactgtctgctgtttttgactagctttcatcctgtagttattgcactgtgattatgacatcaaatttttacctagcttgcatggtccgatccaagcaggattgttttaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="+" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="91266" stop="96721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91566" g_stop="91972" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91973" i_stop="92926" i_length="954">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92927" g_stop="92980" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="457" r_length="49" r_score="0.852"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92981" i_stop="96407" i_length="3427">
            <donor d_prob="0.685" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96408" g_stop="96425" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="475" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="+" ref_id="SGN-E442465" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442465" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91566" e_stop="91972"/>
          <exon e_start="92927" e_stop="92980"/>
          <exon e_start="96408" e_stop="96425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGTATGCTAAGAACTTTTGGGCAGCTCAAGAAAATCCGTATAACAGTGGGAACTTTACAGCAAGAGGCATTTCTTTCAGTTGTGCTCATGATTCCCCTCTCAATTGCAGCTCAGTTCCCAATAGTCCATTGCCTGCTTTAGGTTGCATATTCTCGTTTGGACAGGATAACAGGAAGGATACCTTTGTTTTAACAAGCACCGGTGTATACAGAGTGGTTCGTCCAAGTCGCTGCAACTACACTTGCCCGATGGAGATAGCAAGGACTGCTGAGAGCCCAGGTCCCTCTGCACCTTCAGATGGTCACGTTGCTAAAGCAGATCTCTGCTCGGTCCTTGTTCTTTACTGTCTGCTGCTTTTGACTAGC-TTCATCCTGTAGCCATTGCACTGTGATTATGAGATTAGTATTATACTAAATAGACAAGATATAGTTTGTGGTGGAGCAACATTATCATGTCGCAGAAGATAGAATGCAACTCTTAAGATGAAAACCGTGATCAACCCTGAAAGCTAAACTATTTCCCTTGCTATTTTAAATAACGCGAGACTTTAACCACAGAAACATATCATATCATATATTTATACTACGTTTTAATTAGAAAAAACATTAATAAAAGAATAAAACAGCAAAGCTACCTCAAAGCAACATCAATTTCCCCACCAAAGAATTAACTTAGCTTCAGTTGATAGGTGATTGAAAAACAAACTTGATCAGAATAGATACTTGATTACTACTGCTTTTGACTTAAATTTAAAGTTAAATTGATTGCACGATCAACAATTTATCTTCTCCTGAAACTGATACCACCAGGTCTATGGCATAATTACCAACCGGTGAGAGCTATTTGAAAATTTCATACATATCAAGAAATAGTCATTGAATATCATCTAACCTCCTCCAACAGTTTAAACTGGGTTAAACAATCATGCATTCTTTGAACCGCTACTTCCACATATCAAAACAACAACTTTTCACGAATCTTCTCCTGGTTTCCGGTGCTTTTTGATATTTATTGGTGGTATACTCTAGTATACTTCACTGCAGTAGAACTCCAAGTCCACGACACCTGATTCACGAAGAAAGATGAACGTTAGATCAACCACAAGCACTTCTGCAGCTAGGAACATCAAATATAGGTTAAAATAATGAGGTGCCTTGGAGTTTCTGTCTTTACATCCTTAACATCAACTCTCCACCCCACCAGAATAAAAGTATAGCATAGCCATGTACAAGTCCATTTAAAGTTTTGCACCCTTACCAAAGAAGTTCATATAAAGGTTTGTATGGGAAAAAGAGAGAGTATAGTCTAACGTGTTCCGTTTTCCACTTTACTATAAAGGAGGAAACATGAATTTGCAATTTTTACCTAGCTTGCATGCTTCTTTCTGATCCAAGCGGGATTGTTTTAAAGGTGATTCATTGGTCCTCCCTTCACCTCCCTGCATCGAATGGTGCAAATCTAAGCAAAGAAAGAAAAAGTGCACCCAAATGCTAGATTGCAGCATGCATCTAAAAGTGTACTCAGCTTTAGTTCTTTGAAGAAATGGAAGTGAATTAAAAATTAAATACACAAATACCAAGTATAGTAAACTCGCATGTCTCAAAATATCATCTGACGACTTACAGAGTAACACAACTTGAACTGACTTCAGCACGAAAAAGATTAGCATCATTGGGAGCAAGACAACTAGTTTTTTGTCACTGGTTCCAAAAATAGCTACAGGATGCAGAATCATGTCAGACAACCATCATGCATTCCTGTTATCAGTCTTGTCTGTAAGACATTTTTCTACTGCTTCATCACAAAGCTCAAGCGCCAAATCAAAGTTCCCTTGTTCATAGTTCATATCCGCAAAGATAGAGTAAAATTCTTTATCTGCCAATAAACCATATCTTCTCATCTCTTCAAACAATTCTTTCGCCTCAGAATACTTTTTCCTCTTTAAAAACCCTTTGATGAGTGCATGATAAGTCTCTAATGTCGGAGTGAATCCCTTTTTGATCATTTCCTTGTGCAAAAACCAAGCCTCTTTCATATTTCTAGCTTTGCAATGTCCTCGTATCAATATGTTAAAGGTATTGGCATTTGGTACAACTCCTTGGTCCAGCATACCCTTGTAAATTTCTGACGTCATACACATATTATTTCGCACACTATACTGCTTCATAAGAGAATTGTAAGTAATAGCATTTGGTATTATACCCTTCTCCAACATCCACTTCAACAGTTTATCACCCTCTTCTAGCATCCCTGACATACAAAAGCCATTCATCAGAACGTTGAATGTAACTACTGTGGGTTGGAGCCCTCTAAGCAACATTTGACGAAGTAGTCCATGAGCCTTGCCCATCTCTCCTAATTTACAATAAGCATCCATTAGAGTAGTATACGTAAAAGCATCAGGACAGATACCTGCAGCTTCCATATCTTCCATCAACTTCAACGCTTGATTCACATCTCCAGCTTTACAAAAACCATTAACAAGTGAGTTGTATGTGTAAATATTCAGTTCAAGACCCTTTCCGCACATCTCTTGGAGAAGTTCATTTGCTGTTTCAAGTTCCCCTAGTTTACAAAGCCCATCTACTAGTGTAGTGTAAGTCACAATATTTGGCACAAACTGCATCTGAACCATTTTGTTGTGAAGAGAAAAGGCTGTCCTTATCTCCCCTGCCTTGCAATAACCGTCAATAAGTGTTGTATAAATGAATTCGTCAGGTTCTAACCCCCGGCCAAGCATATAATTCAACAACTTATCTGCTTCAACAATATTTCCAGTTTGACACAGACCAGAAATAAGGGTAGTATATGTTATCAAATCAGGGCTAATGTTAAGACTCTGCATCTCATTGAACAGGCCGTATGCAGCACTTATGTTCCCAGTTTTGCAGAAGCCATCTATAAGAGTTGTGTAAACAACATTATCCGCAGTGATTCGCTGGGAAGTCATCTCCCTCAGGATTTTCTCGGCATCATGCACTTTCCCTCTCTTTGACAAAAGAAGAATTATACTGTTAAAAGTAAATGCATTTGGCTTCAATCCTTTTACTTGCATTTCTTCGATGATCTTCATCACTGATTCAAGCTGTCCAGCGGCACAGTATCCATTAATCACAGTGCTGTAACTTACAACATCGGGCATACACCCCCTCAGCTCCATTTGCAGGAGTAAGTTATGAGCTTCTTTAACTTTCCCTATCCGACAAAGAGAATGGATCACTATATTATGAGATTCATTGTCCCAGCAAACACCCACTTCAGAAAATTCATTAAAGACCTTTAGCATCATTTTGTGCTCCTCAATCTCATGCGAGAGACGTGAAAGGAAAAAGTTACATGAAGAGACAGATAGAACTAAGCCATAGTGCAACATTTTATCAAAAAGTTTTCTTCCATAATCTAGACTTCCTAACTCTACAAGCACTTGGAAGAAAATATCAAAAACAAATGGATTAGAACCCCAATCCTTATAAGTGTATATTAACTTTTCAAGAAACTGGGGGAAGAAAACTGTCACATCTACACCGGGTCTTGCCCAAAAATCATGAATAAGCCTATGTACTATCCTTGCATCTTTCTGTGCAGCAGCAATATGCACGATAATACAACGGACCTCAATTGACGGGTCCCTCCGTTGACACCACCAATCAAAGAAATCTATAACCAGTTTGTAATCATTCTTTATGGTCATGAGAACCCAAACGATGTGGTCAGGTTTAATTTTTGATTCAAAGGGCTTTAAAACACGCCGAACGTGCTCAGAGTAACGTTGCTTAATAGAAGTCGATATGTGCTGCACAAGTTCAAAGTCTCTAATGGAGGGTTTTTTAGGCGAATAATCTGGAAAAGATCTCGCGGCAGTTAAAGTTAGGCAAGAACGCTTTGCAACTGCAGAATTAGTTGAATATGAAAAGAATGACATGTGTTTTGTCACAGAACCCAAGTATTGATGATAAGACAAGACTTGACAATGGTAAGGAAAAACAAAAGCAGAACACCTCCTCATATCTCTTTGAGAGAGCCATTAAAGCTTGCAAATGCCATGGCTCTCCTCCATGTATAAAATCAATTTATAGAAACTTCATCTCTTTGTCACCTGTAAAACAAATACGATGATCACATTAAACATTGATTACAGTAACTTTTTGTTAAGAGGTCAATTTCTGCAAATGCAACATCAAGAAAAGAAGGAAATCGAATAAAGCAAAAAAAAAATCAACCTATCTGATGCTGCTGCTATTGAGGAAGAGATAAAGCAAGAAATTTGCCACATTAGGAGGATGCCAGTGAAGAAGAAGGACCTTGGATTTACCAGAAAAAGAGATCGACTATAAAGAATCTATCAAAAAATATTGTTTTATCATAAAGAACCTATCTTTAAAACCCAATTCTCAAATTCTCAATTCCAATTACAATAAGAAACAGCAAAACTTAGTCCAAAAAAGTGTTTGTCTTTGGAGGGTAGAGTGTACACAGACCTTACCGCTACCTCTAAGTTAGAGAGCTGTTTCTGATAGACCTCGGCAATAAAAAACAGATGGGTAGACAAAAGTGCACGAAAACATAAGTAGGAAAACTGGAAAGTGGATTTTTTCTGGTCAGATTTCTTGGTGGAGAAAGCAGTGAAGGCTGGCTGATGCTGTTATTGCTTCACCAATAAATAAACATCCATAACAGAAACAGCTAACTTAAACATTCAACTCACTATTCAACAAAAAGGGGTAGCTCAATGCTCGGATAGTAAGCATCCTCCACCTTCAACTCTACGATTACGAGTTCGAATCACCAAAAGAGCACCAAAAGAGCAGAGAGCTAGGAACTTTAATATTTTTTTTTTAAAAAAAAAAAAAACTCA</genome_strand>
        <mrna_strand>AGATTTGTATGCTAAGAACTTTTGGGCAGCTCAAGAAAATCCGTATAACAGTGGGAACTTTACAGCAAGAAGCATCCGTTTCAGTTGTGCTCATGATTCCCCTCTCAATTGCAGCTCAGTTCCCAATAGTCCATTGCCTGCTTTAGGTTACATATTCTCATTTGGACAGGATAACAGGAAGGATACCTATATTTTAACAAGCACCGGTGTATACAGAGTGGTTCGTCCAAGTCGCTGCAAGTACACTTGCTCGATGGAGACAGCAAGGACTGCTGAGACACCACTTCCCTCTGCACCTTCAGATGGTCACATTGCTAAAGCAGATCTCTACTCGGTCCTTCTTCTTTACTGTCTGCTGTTTTTGACTAGCTTTCATCCTGTAGTTATTGCACTGTGATTATGACATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTACCTAGCTTGCATG-GTC---C-GATCCAAGCAGGATTGTTTTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271027" ref_strand="+" ref_description="SGN-E271027 [cLEM-22-P15]">
      <seq>tcagtttcaggagaagataaattgttgatcgtgcaatcaatttaactttaaatttaagtcaaaagcagtagtaatcaagtatctattctgatcaagtttgtttttcaatcacctatcaactgaagctaagttaattctttggtggggaaattgatgttgctttgagtgcaatggctacaggatgaagctagtcaaaagcagcagacagtaaagaacaaggaccgagcagagatctgctttagcaacgtgaccatctgaaggtgcagagggacctgngctctcagcagtccttgctatctccatcgggcaagtgtagttgcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="92670" stop="91498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92370" g_stop="92205" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92204" i_stop="91956" i_length="249">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91955" g_stop="91798" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="324" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E271027" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92370" e_stop="92205"/>
          <exon e_start="91955" e_stop="91798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTCAGGAGAAGATAAATTGTTGATCGTGCAATCAATTTAACTTTAAATTTAAGTCAAAAGCAGTAGTAATCAAGTATCTATTCTGATCAAGTTTGTTTTTCAATCACCTATCAACTGAAGCTAAGTTAATTCTTTGGTGGGGAAATTGATGTTGCTTTGAGGTAGCTTTGCTGTTTTATTCTTTTATTAATGTTTTTTCTAATTAAAACGTAGTATAAATATATGATATGATATGTTTCTGTGGTTAAAGTCTCGCGTTATTTAAAATAGCAAGGGAAATAGTTTAGCTTTCAGGGTTGATCACGGTTTTCATCTTAAGAGTTGCATTCTATCTTCTGCGACATGATAATGTTGCTCCACCACAAACTATATCTTGTCTATTTAGTATAATACTAATCTCATAATCACAGTGCAATGGCTACAGGATGAAGCTAGTCAAAAGCAGCAGACAGTAAAGAACAAGGACCGAGCAGAGATCTGCTTTAGCAACGTGACCATCTGAAGGTGCAGAGGGACCTGGGCTCTCAGCAGTCCTTGCTATCTCCATCGGGCAAGTGTAGTTGCAGCG</genome_strand>
        <mrna_strand>TCAGTTTCAGGAGAAGATAAATTGTTGATCGTGCAATCAATTTAACTTTAAATTTAAGTCAAAAGCAGTAGTAATCAAGTATCTATTCTGATCAAGTTTGTTTTTCAATCACCTATCAACTGAAGCTAAGTTAATTCTTTGGTGGGGAAATTGATGTTGCTTTGAG.........................................................................................................................................................................................................................................................TGCAATGGCTACAGGATGAAGCTAGTCAAAAGCAGCAGACAGTAAAGAACAAGGACCGAGCAGAGATCTGCTTTAGCAACGTGACCATCTGAAGGTGCAGAGGGACCTGNGCTCTCAGCAGTCCTTGCTATCTCCATCGGGCAAGTGTAGTTGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204959" ref_strand="+" ref_description="SGN-E204959 [cLEC-16-C8]">
      <seq>aagaggcttggtttttgcacaaggaaatgatcaaaaagggattcactccgacattagagacttatcatgcactcatcaaagggtttttaaagaggaaaaagtattctgaggcgaaagaattgtttgaagagatgagaagatatggtttattggcagataaagaattttactctatctttgcggatatgaactatgaacaagggaactttgatttggcgcttgagctttgtgatgaagcagtagaaaaatgtcttacagacaagactgataacaggaatgcatgatggttgtctgacatgattctgcatcctgtagctatttttggaaccagtgacaaaaaactagttgtcttgctcccaatgatgctaatctttttcgtgctgaagtcagttcaagttgtgttactctggaggtgaagggaggaccaatgaatcacctttaaaacaatcccgcttggatcagaaagaagcatgcaagctaggtgtcgtggacttggagttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="93901" stop="92312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93601" g_stop="93194" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93193" i_stop="93009" i_length="185">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93008" g_stop="92936" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="481" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92935" i_stop="92636" i_length="300">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92635" g_stop="92612" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="505" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E204959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93601" e_stop="93194"/>
          <exon e_start="93008" e_stop="92936"/>
          <exon e_start="92635" e_stop="92612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCTTGGTTTTTGCACAAGGAAATGATCAAAAAGGGATTCACTCCGACATTAGAGACTTATCATGCACTCATCAAAGGGTTTTTAAAGAGGAAAAAGTATTCTGAGGCGAAAGAATTGTTTGAAGAGATGAGAAGATATGGTTTATTGGCAGATAAAGAATTTTACTCTATCTTTGCGGATATGAACTATGAACAAGGGAACTTTGATTTGGCGCTTGAGCTTTGTGATGAAGCAGTAGAAAAATGTCTTACAGACAAGACTGATAACAGGAATGCATGATGGTTGTCTGACATGATTCTGCATCCTGTAGCTATTTTTGGAACCAGTGACAAAAAACTAGTTGTCTTGCTCCCAATGATGCTAATCTTTTTCGTGCTGAAGTCAGTTCAAGTTGTGTTACTCTGTAAGTCGTCAGATGATATTTTGAGACATGCGAGTTTACTATACTTGGTATTTGTGTATTTAATTTTTAATTCACTTCCATTTCTTCAAAGAACTAAAGCTGAGTACACTTTTAGATGCATGCTGCAATCTAGCATTTGGGTGCACTTTTTCTTTCTTTGCTTAGATTTGCACCATTCGATGCAGGGAGGTGAAGGGAGGACCAATGAATCACCTTTAAAACAATCCCGCTTGGATCAGAAAGAAGCATGCAAGCTAGGTAAAAATTGCAAATTCATGTTTCCTCCTTTATAGTAAAGTGGAAAACGGAACACGTTAGACTATACTCTCTCTTTTTCCCATACAAACCTTTATATGAACTTCTTTGGTAAGGGTGCAAAACTTTAAATGGACTTGTACATGGCTATGCTATACTTTTATTCTGGTGGGGTGGAGAGTTGATGTTAAGGATGTAAAGACAGAAACTCCAAGGCACCTCATTATTTTAACCTATATTTGATGTTCCTAGCTGCAGAAGTGCTTGTGGTTGATCTAACGTTCATCTTTCTTCGTGAATCAGGTGTCGTGGACTTGGAGTTCTACT</genome_strand>
        <mrna_strand>AAGAGGCTTGGTTTTTGCACAAGGAAATGATCAAAAAGGGATTCACTCCGACATTAGAGACTTATCATGCACTCATCAAAGGGTTTTTAAAGAGGAAAAAGTATTCTGAGGCGAAAGAATTGTTTGAAGAGATGAGAAGATATGGTTTATTGGCAGATAAAGAATTTTACTCTATCTTTGCGGATATGAACTATGAACAAGGGAACTTTGATTTGGCGCTTGAGCTTTGTGATGAAGCAGTAGAAAAATGTCTTACAGACAAGACTGATAACAGGAATGCATGATGGTTGTCTGACATGATTCTGCATCCTGTAGCTATTTTTGGAACCAGTGACAAAAAACTAGTTGTCTTGCTCCCAATGATGCTAATCTTTTTCGTGCTGAAGTCAGTTCAAGTTGTGTTACTCT.........................................................................................................................................................................................GGAGGTGAAGGGAGGACCAATGAATCACCTTTAAAACAATCCCGCTTGGATCAGAAAGAAGCATGCAAGCTAG............................................................................................................................................................................................................................................................................................................GTGTCGTGGACTTGGAGTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733888" ref_strand="+" ref_description="SGN-E733888 [LB11AH05]">
      <seq>caatcataagctaaggttgtttaagatggaggacgtgagcatgggaatgtgggtagaacaattcaacagttccaggcccgtagagtatgtgcatagcttgaagttctgtcagtttgggtgcattgatgattattacactgcacattatcaatctccaaggcaaatgatctgcctgtggagaaagttgctgaaccaagggaaacctcagtgctgtaatgtgagatgacaaggcataccctgtcagctagtgttaggcaactctgaaaaggaaacgagacaagatagatgccaaggcgcgcataccctgttagctagtgttaggcaacacggaaaaggaagcgagacaagataagttcctgggaagagcttgtacatattgctcgagtaaattagcctatcgtgctataattatatttacttcattcattcttttgttggggcgtcagtcttgtaccccaggctagttgacacgtcagtctcgttaaactgtatgaaaacaatgacagcttaagctcttatatatgaaattcaagggtgaatggctcattttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="105758" stop="81849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105605" g_stop="105590" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105589" i_stop="105458" i_length="132">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105457" g_stop="104909" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="565" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E733888" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105605" e_stop="105590"/>
          <exon e_start="105457" e_stop="104909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAGCTAAGGGTAAGTGCCTTGATCTGCTTTGTGAAATAATCCTAACCTCTCTCTTGTCCCCCCCCCCCCCCCCCCCCCGGTCCCTTGTGGAAACCTGGACAGAGAAATAATCATATCTAACATATATTTGACCTGCTGCAGTTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTCAATCTCATTTTGCA</genome_strand>
        <mrna_strand>CAATCATAAGCTAAGG....................................................................................................................................TTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734507" ref_strand="+" ref_description="SGN-E734507 [LB12DD08]">
      <seq>gatacataagctaaggttgtttaagatggaggacgtgagcatgggaatgtgggtagaacaattcaacagttccaggcccgtagagtatgtgcatagcttgaagttctgtcagtttgggtgcattgatgattattacactgcacattatcaatctccaaggcaaatgatctgcctgtggagaaagttgctgaaccaagggaaacctcagtgctgtaatgtgagatgacaaggcataccctgtcagctagtgttaggcaactctgaaaaggaaacgagacaagatagatgccaaggcgcgcataccctgttagctagtgttaggcaacacggaaaaggaagcgagacaagataagttcctgggaagagcttgtacatattgctcgagtaaattagcctatcgtgctataattatatttacttcattcattcttttgttggggcgtcagtcttgtaccccaggctagttgacacgtcagtctcgttaaactgtatgaaaacaatgacagcttaagctcttatatatgaaattcaagggtgaatggctcattttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="105758" stop="81849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105605" g_stop="105590" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105589" i_stop="105458" i_length="132">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105457" g_stop="104909" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="565" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E734507" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105605" e_stop="105590"/>
          <exon e_start="105457" e_stop="104909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAGCTAAGGGTAAGTGCCTTGATCTGCTTTGTGAAATAATCCTAACCTCTCTCTTGTCCCCCCCCCCCCCCCCCCCCCGGTCCCTTGTGGAAACCTGGACAGAGAAATAATCATATCTAACATATATTTGACCTGCTGCAGTTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTCAATCTCATTTTGCA</genome_strand>
        <mrna_strand>GATACATAAGCTAAGG....................................................................................................................................TTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735836" ref_strand="+" ref_description="SGN-E735836 [LC03BD02]">
      <seq>ctgtaatgtgagatgacaaggcataccctgtcagctagtgttaggcaactctgaaaaggaaacgagacaagatagatgccaaggcgcgcataccctgttagctagtgttaggcaacacggaaaaggaagcgagacaagataagttcctgggaagagcttgtacatattgctcgagtaaattagcctatcgtgctataattatatttacttcattcattcttttgttggggcgtcagtcttgtaccccaggctagttgacacgtcagtctcgttaaactgtatgaaaacaatgacagcttaagctcttatatatgaaattcaagggtgaatggctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05SLm0037H06-NzzDO/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05SLm0037H06.1" temp_strand="-" temp_description="C05SLm0037H06.1  AC188782.2 htgs_phase:3 submitted_to_sgn_as:C05SLm0037H06, sequenced_by:iitg upload_account_name:india COMPLETE SEQUENCE">
        <position start="105563" stop="104628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105263" g_stop="104933" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="345"/>
      <MATCH_line gen_id="C05SLm0037H06.1" gen_strand="-" ref_id="SGN-E735836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05SLm0037H06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105263" e_stop="104933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATG</genome_strand>
        <mrna_strand>CTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>84</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12332" PGL_stop="13304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12332" e_stop="12419"/>
            <exon e_start="12651" e_stop="12773"/>
            <exon e_start="12875" e_stop="13304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.667" acc_prob="0.215" e_score="0.966"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.874"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="12332" e_stop="12419" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.667" acc_prob="0.215">
            <gDNA_intron_boundary i_start="12420" i_stop="12650" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="12651" e_stop="12773" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12774" i_stop="12874" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="0.874">
            <gDNA_exon_boundary e_start="12875" e_stop="13304" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12332" stop="12419"/>
              <exon start="12651" stop="12773"/>
              <exon start="12875" stop="13304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12335" stop="12419"/>
              <exon start="12651" stop="12773"/>
              <exon start="12875" stop="13304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435781" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAGCAAGTTCGAAGAAAATGGGTGCTAACTACTCATCAACTTGGCATGAGACTCATAATATGCCAATCACACCACAAAGCAAGAG : ATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGAT : GATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAATAAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGCACTAATATTGGTATATTTGATATGAATAAGTAAAAGGTCTTTCAGGTTTCTGGGTTCATAGACTGTCTAATATTCATCAGTGTATCTATGCCCCTGAACTACACTTTAGAATATAAAAAATGAAAATACTAAAA</gDNA_template>
            <first_frame> E  E  Q  V  R  R  K  W  V  L  T  T  H  Q  L  G  M  R  L  I  I  C  Q  S  H  H  K  A  R   : D  C  Y  *  L  H  S  Y  M  V  W  S  L  Q  I  H  G  T  S  S  Q  *  L  C  C  *  I  Y  R  R  *  V  C  Q  D  *  C  R  *  A  G   : *  C  S  S  R  I  W  G  S  S  N  A  N  V  R  A  D  K  E  R  *  G  S  *  Q  D  C  W  S  R  Q  G  W  A  T  E  E  D  S  E  T  Q  S  Y  L  R  L  N  K  P  K  A  V  T  *  *  A  G  F  T  R  R  *  V  S  V  Q  N  K  C  Y  I  F  V  S  K  N  *  L  C  T  H  L  W  S  F  S  L  L  I  V  K  S  K  Q  A  D  L  S  T  N  I  G  I  F  D  M  N  K  *  K  V  F  Q  V  S  G  F  I  D  C  L  I  F  I  S  V  S  M  P  L  N  Y  T  L  E  Y  K  K  *  K  Y  *   </first_frame>
            <second_frame>  K  S  K  F  E  E  N  G  C  *  L  L  I  N  L  A  *  D  S  *  Y  A  N  H  T  T  K  Q  E  :  I  V  I  D  F  T  A  T  W  C  G  P  C  K  Y  M  E  P  V  L  N  D  F  A  A  K  Y  T  D  V  E  F  V  K  I  D  V  D  E  L  D  :  D  V  A  Q  E  Y  G  V  Q  A  M  P  T  F  V  L  I  K  K  G  K  V  V  D  K  I  V  G  A  D  K  D  G  L  Q  K  K  I  Q  K  H  K  A  I  Y  V  *  T  N  Q  R  Q  *  R  N  E  Q  G  L  L  D  D  R  S  L  C  R  I  N  V  I  S  L  S  V  R  T  S  Y  V  L  T  Y  G  L  S  H  F  *  *  *  N  P  N  R  L  I  *  A  L  I  L  V  Y  L  I  *  I  S  K  R  S  F  R  F  L  G  S  *  T  V  *  Y  S  S  V  Y  L  C  P  *  T  T  L  *  N  I  K  N  E  N  T  K  </second_frame>
            <third_frame>   R  A  S  S  K  K  M  G  A  N  Y  S  S  T  W  H  E  T  H  N  M  P  I  T  P  Q  S  K  R :   L  L  L  T  S  Q  L  H  G  V  V  L  A  N  T  W  N  Q  F  S  M  T  L  L  L  N  I  Q  T  L  S  L  S  R  L  M  S  M  S  W  M :   M  *  L  K  N  M  G  F  K  Q  C  Q  R  S  C  *  *  R  K  V  R  *  L  T  R  L  L  E  Q  T  R  M  G  Y  R  R  R  F  R  N  T  K  L  S  T  S  K  Q  T  K  G  S  N  V  M  S  R  V  Y  S  T  I  G  L  C  A  E  *  M  L  Y  L  C  Q  *  E  L  V  M  Y  S  P  M  V  F  L  T  S  D  S  K  I  Q  T  G  *  F  K  H  *  Y  W  Y  I  *  Y  E  *  V  K  G  L  S  G  F  W  V  H  R  L  S  N  I  H  Q  C  I  Y  A  P  E  L  H  F  R  I  *  K  M  K  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12393" stop="12419"/>
                    <exon start="12651" stop="12773"/>
                    <exon start="12875" stop="13015"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YANHTTKQEIVIDFTATWCGPCKYMEPVLNDFAAKYTDVEFVKIDVDELDDVAQEYGVQAMPTFVLIKKGKVVDKIVGADKDGLQKKIQKHKAIYV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12419"/>
                    <exon start="12651" stop="12773"/>
                    <exon start="12875" stop="12881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASSKKMGANYSSTWHETHNMPITPQSKRLLLTSQLHGVVLANTWNQFSMTLLLNIQTLSLSRLMSMSWMM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12398" e_stop="12495"/>
            <exon e_start="12651" e_stop="12773"/>
            <exon e_start="12875" e_stop="13170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.694" acc_prob="0.215" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12398" e_stop="12495" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.694" acc_prob="0.215">
            <gDNA_intron_boundary i_start="12496" i_stop="12650" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12651" e_stop="12773" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12774" i_stop="12874" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12875" e_stop="13170" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12398" stop="12495"/>
              <exon start="12651" stop="12773"/>
              <exon start="12875" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCACACCACAAAGCAAGAGGTCTCAAGTCATTGCTTTTCACTCTTCAACAAAATGGAAGCTCCATTTTGATTCTTTGAAAAATACAAACAAACTG : ATTGTTATTGACTTCACAGCTACATGGTGTGGTCCTTGCAAATACATGGAACCAGTTCTCAATGACTTTGCTGCTAAATATACAGACGTTGAGTTTGTCAAGATTGATGTCGATGAGCTGGAT : GATGTAGCTCAAGAATATGGGGTTCAAGCAATGCCAACGTTCGTGCTGATAAAGAAAGGTAAGGTAGTTGACAAGATTGTTGGAGCAGACAAGGATGGGCTACAGAAGAAGATTCAGAAACACAAAGCTATCTACGTCTAAACAAACCAAAGGCAGTAACGTAATGAGCAGGGTTTACTCGACGATAGGTCTCTGTGCAGAATAAATGTTATATCTTTGTCAGTAAGAACTAGTTATGTACTCACCTATGGTCTTTCTCACTTCTGATAGTAAAATCCAAACAGGCTGATTTAAGC</gDNA_template>
            <first_frame> Q  S  H  H  K  A  R  G  L  K  S  L  L  F  T  L  Q  Q  N  G  S  S  I  L  I  L  *  K  I  Q  T  N  * :   L  L  L  T  S  Q  L  H  G  V  V  L  A  N  T  W  N  Q  F  S  M  T  L  L  L  N  I  Q  T  L  S  L  S  R  L  M  S  M  S  W  M :   M  *  L  K  N  M  G  F  K  Q  C  Q  R  S  C  *  *  R  K  V  R  *  L  T  R  L  L  E  Q  T  R  M  G  Y  R  R  R  F  R  N  T  K  L  S  T  S  K  Q  T  K  G  S  N  V  M  S  R  V  Y  S  T  I  G  L  C  A  E  *  M  L  Y  L  C  Q  *  E  L  V  M  Y  S  P  M  V  F  L  T  S  D  S  K  I  Q  T  G  *  F  K  </first_frame>
            <second_frame>  N  H  T  T  K  Q  E  V  S  S  H  C  F  S  L  F  N  K  M  E  A  P  F  *  F  F  E  K  Y  K  Q  T   : D  C  Y  *  L  H  S  Y  M  V  W  S  L  Q  I  H  G  T  S  S  Q  *  L  C  C  *  I  Y  R  R  *  V  C  Q  D  *  C  R  *  A  G   : *  C  S  S  R  I  W  G  S  S  N  A  N  V  R  A  D  K  E  R  *  G  S  *  Q  D  C  W  S  R  Q  G  W  A  T  E  E  D  S  E  T  Q  S  Y  L  R  L  N  K  P  K  A  V  T  *  *  A  G  F  T  R  R  *  V  S  V  Q  N  K  C  Y  I  F  V  S  K  N  *  L  C  T  H  L  W  S  F  S  L  L  I  V  K  S  K  Q  A  D  L  S </second_frame>
            <third_frame>   I  T  P  Q  S  K  R  S  Q  V  I  A  F  H  S  S  T  K  W  K  L  H  F  D  S  L  K  N  T  N  K  L  :  I  V  I  D  F  T  A  T  W  C  G  P  C  K  Y  M  E  P  V  L  N  D  F  A  A  K  Y  T  D  V  E  F  V  K  I  D  V  D  E  L  D  :  D  V  A  Q  E  Y  G  V  Q  A  M  P  T  F  V  L  I  K  K  G  K  V  V  D  K  I  V  G  A  D  K  D  G  L  Q  K  K  I  Q  K  H  K  A  I  Y  V  *  T  N  Q  R  Q  *  R  N  E  Q  G  L  L  D  D  R  S  L  C  R  I  N  V  I  S  L  S  V  R  T  S  Y  V  L  T  Y  G  L  S  H  F  *  *  *  N  P  N  R  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12400" stop="12495"/>
                    <exon start="12651" stop="12773"/>
                    <exon start="12875" stop="13015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITPQSKRSQVIAFHSSTKWKLHFDSLKNTNKLIVIDFTATWCGPCKYMEPVLNDFAAKYTDVEFVKIDVDELDDVAQEYGVQAMPTFVLIKKGKVVDKIVGADKDGLQKKIQKHKAIYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16780" PGL_stop="13594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16780" e_stop="16265"/>
            <exon e_start="14332" e_stop="13594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16780" e_stop="16265" e_length="516"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16264" i_stop="14333" i_length="1932"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="14332" e_stop="13594" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16780" stop="16270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16631" stop="16265"/>
              <exon start="14332" stop="14159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16334" stop="16265"/>
              <exon start="14332" stop="13691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16334" stop="16265"/>
              <exon start="14332" stop="13813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14288" stop="13750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13987" stop="13594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13970" stop="13594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTGATTATTCCAACGGTTAGCTACAATGGGAGTTGATTACTATAACTTACTGAAAGTATCTAGGAATGCGAGTGAAGAAGATTTGAAGAGATCGTACAAGCGATTAGCGATGAAATGGCATCCAGATAAGAATAGTCAGAACAATAAGGAAGCAGAAGCGAAATTCAAGCAGATTTCTGAGGCGTATGATGTGCTTAGTGATCCTCAGAAGCGTCAGATCTATGATTTGTACGGTGACGATGCGTTGAAGTCTGGTCAATTTGCTTCGGCATCGCCGACTAGTGCTGGTAGTGGGACTGGTAATGGTAGAGGGTTTAGATTCAATACGCGTGATGCGGAGGATATTTTTGCTGAGTTTTTTGGTGGATCGGAGGGGCTTAGTAGTGGTTCTGGTGCCGGAGTTGGTAGGAAAGCAGCGCCGGTGGAGAATAAACTTCCGTGTAGCTTGGAAGAGCTTTACAAAGGATCTAGAAGGAAAATGAAGATCTCAAGGATTCTTCTGGATGACTCTGG : TAAGCCAACAACTGTTGAAGAGGTCTTAGCAATACACATCAAACCAGGTTGGAAGAAAGGCACAAAAATAACTTTTCCAGAGAAAGGGGACTATGAATATGGAGCTGCCCCGGGTGATCTTATTTTTGTGATTGATGAAAAGCCACATGCTGTCTTCAAGAGGGATGGAAATGATCTAGTCACGAATCAGAAAATATCGTTACTGGATGCTCTCACTGGAAAAACTATCAGCTTGACTACTTTGGACGGAAGGGAACTCACAATACCAATCAAAGAAATCGTCAAACCAGGACAGGAGCTGATAATCCAAAATGAGGGAATGCCAATATCAAAGGAACGTGGCAAAAAAGGGAATTTGAAGATCAAGTTTGACATTAAATTTCCATCAAGGCTAAATGCAGATCAGAAATCTGATCTCAGAAGGGTGCTATGCAGGAGTATTGACTAGTCCTATTTTTAACTTAAGGTGTCACTAACACTATCTTGGAGTTGCGCGGAATGTAAATATTTAACAAGCTTTCTGTAGAAATGAAATTGTACATATTAGGATATAATCTTAAGGATGCGTTCCAACATTTACAAATAGTAAGCACCAAAAGAGGAGCTAATGTAGCTACTTCTTTAGCTGCTTGCATTTTCTTTTGTTGGATGTAAAAGGAGTAAGTAGTTTAATAGCTGTGTTGTTTGATTTGGAGGTGGATACTATATATTAAGTATTGTAGTTGCGAGTAGTGGCTCT</gDNA_template>
            <first_frame> V  V  I  I  P  T  V  S  Y  N  G  S  *  L  L  *  L  T  E  S  I  *  E  C  E  *  R  R  F  E  E  I  V  Q  A  I  S  D  E  M  A  S  R  *  E  *  S  E  Q  *  G  S  R  S  E  I  Q  A  D  F  *  G  V  *  C  A  *  *  S  S  E  A  S  D  L  *  F  V  R  *  R  C  V  E  V  W  S  I  C  F  G  I  A  D  *  C  W  *  W  D  W  *  W  *  R  V  *  I  Q  Y  A  *  C  G  G  Y  F  C  *  V  F  W  W  I  G  G  A  *  *  W  F  W  C  R  S  W  *  E  S  S  A  G  G  E  *  T  S  V  *  L  G  R  A  L  Q  R  I  *  K  E  N  E  D  L  K  D  S  S  G  *  L  W  :  *  A  N  N  C  *  R  G  L  S  N  T  H  Q  T  R  L  E  E  R  H  K  N  N  F  S  R  E  R  G  L  *  I  W  S  C  P  G  *  S  Y  F  C  D  *  *  K  A  T  C  C  L  Q  E  G  W  K  *  S  S  H  E  S  E  N  I  V  T  G  C  S  H  W  K  N  Y  Q  L  D  Y  F  G  R  K  G  T  H  N  T  N  Q  R  N  R  Q  T  R  T  G  A  D  N  P  K  *  G  N  A  N  I  K  G  T  W  Q  K  R  E  F  E  D  Q  V  *  H  *  I  S  I  K  A  K  C  R  S  E  I  *  S  Q  K  G  A  M  Q  E  Y  *  L  V  L  F  L  T  *  G  V  T  N  T  I  L  E  L  R  G  M  *  I  F  N  K  L  S  V  E  M  K  L  Y  I  L  G  Y  N  L  K  D  A  F  Q  H  L  Q  I  V  S  T  K  R  G  A  N  V  A  T  S  L  A  A  C  I  F  F  C  W  M  *  K  E  *  V  V  *  *  L  C  C  L  I  W  R  W  I  L  Y  I  K  Y  C  S  C  E  *  W  L  </first_frame>
            <second_frame>  W  *  L  F  Q  R  L  A  T  M  G  V  D  Y  Y  N  L  L  K  V  S  R  N  A  S  E  E  D  L  K  R  S  Y  K  R  L  A  M  K  W  H  P  D  K  N  S  Q  N  N  K  E  A  E  A  K  F  K  Q  I  S  E  A  Y  D  V  L  S  D  P  Q  K  R  Q  I  Y  D  L  Y  G  D  D  A  L  K  S  G  Q  F  A  S  A  S  P  T  S  A  G  S  G  T  G  N  G  R  G  F  R  F  N  T  R  D  A  E  D  I  F  A  E  F  F  G  G  S  E  G  L  S  S  G  S  G  A  G  V  G  R  K  A  A  P  V  E  N  K  L  P  C  S  L  E  E  L  Y  K  G  S  R  R  K  M  K  I  S  R  I  L  L  D  D  S  G :   K  P  T  T  V  E  E  V  L  A  I  H  I  K  P  G  W  K  K  G  T  K  I  T  F  P  E  K  G  D  Y  E  Y  G  A  A  P  G  D  L  I  F  V  I  D  E  K  P  H  A  V  F  K  R  D  G  N  D  L  V  T  N  Q  K  I  S  L  L  D  A  L  T  G  K  T  I  S  L  T  T  L  D  G  R  E  L  T  I  P  I  K  E  I  V  K  P  G  Q  E  L  I  I  Q  N  E  G  M  P  I  S  K  E  R  G  K  K  G  N  L  K  I  K  F  D  I  K  F  P  S  R  L  N  A  D  Q  K  S  D  L  R  R  V  L  C  R  S  I  D  *  S  Y  F  *  L  K  V  S  L  T  L  S  W  S  C  A  E  C  K  Y  L  T  S  F  L  *  K  *  N  C  T  Y  *  D  I  I  L  R  M  R  S  N  I  Y  K  *  *  A  P  K  E  E  L  M  *  L  L  L  *  L  L  A  F  S  F  V  G  C  K  R  S  K  *  F  N  S  C  V  V  *  F  G  G  G  Y  Y  I  L  S  I  V  V  A  S  S  G  S </second_frame>
            <third_frame>   G  D  Y  S  N  G  *  L  Q  W  E  L  I  T  I  T  Y  *  K  Y  L  G  M  R  V  K  K  I  *  R  D  R  T  S  D  *  R  *  N  G  I  Q  I  R  I  V  R  T  I  R  K  Q  K  R  N  S  S  R  F  L  R  R  M  M  C  L  V  I  L  R  S  V  R  S  M  I  C  T  V  T  M  R  *  S  L  V  N  L  L  R  H  R  R  L  V  L  V  V  G  L  V  M  V  E  G  L  D  S  I  R  V  M  R  R  I  F  L  L  S  F  L  V  D  R  R  G  L  V  V  V  L  V  P  E  L  V  G  K  Q  R  R  W  R  I  N  F  R  V  A  W  K  S  F  T  K  D  L  E  G  K  *  R  S  Q  G  F  F  W  M  T  L   : V  S  Q  Q  L  L  K  R  S  *  Q  Y  T  S  N  Q  V  G  R  K  A  Q  K  *  L  F  Q  R  K  G  T  M  N  M  E  L  P  R  V  I  L  F  L  *  L  M  K  S  H  M  L  S  S  R  G  M  E  M  I  *  S  R  I  R  K  Y  R  Y  W  M  L  S  L  E  K  L  S  A  *  L  L  W  T  E  G  N  S  Q  Y  Q  S  K  K  S  S  N  Q  D  R  S  *  *  S  K  M  R  E  C  Q  Y  Q  R  N  V  A  K  K  G  I  *  R  S  S  L  T  L  N  F  H  Q  G  *  M  Q  I  R  N  L  I  S  E  G  C  Y  A  G  V  L  T  S  P  I  F  N  L  R  C  H  *  H  Y  L  G  V  A  R  N  V  N  I  *  Q  A  F  C  R  N  E  I  V  H  I  R  I  *  S  *  G  C  V  P  T  F  T  N  S  K  H  Q  K  R  S  *  C  S  Y  F  F  S  C  L  H  F  L  L  L  D  V  K  G  V  S  S  L  I  A  V  L  F  D  L  E  V  D  T  I  Y  *  V  L  *  L  R  V  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16773" stop="16265"/>
                    <exon start="14332" stop="13885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFQRLATMGVDYYNLLKVSRNASEEDLKRSYKRLAMKWHPDKNSQNNKEAEAKFKQISEAYDVLSDPQKRQIYDLYGDDALKSGQFASASPTSAGSGTGNGRGFRFNTRDAEDIFAEFFGGSEGLSSGSGAGVGRKAAPVENKLPCSLEELYKGSRRKMKISRILLDDSGKPTTVEEVLAIHIKPGWKKGTKITFPEKGDYEYGAAPGDLIFVIDEKPHAVFKRDGNDLVTNQKISLLDALTGKTISLTTLDGRELTIPIKEIVKPGQELIIQNEGMPISKERGKKGNLKIKFDIKFPSRLNADQKSDLRRVLCRSID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13602" PGL_stop="14268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13602" e_stop="14268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="13602" e_stop="14268" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13602" stop="14268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTCGCAACTACAATACTTAATATATAGTATCCACCTCCAAATCAAACAACACAGCTATTAAACTACTTACTCCTTTTACATCCAACAAAAGAAAATGCAAGCAGCTAAAGAAGTAGCTACATTAGCTCCTCTTTTGGTGCTTACTATTTGTAAATGTTGGAACGCATCCTTAAGATTATATCCTAATATGTACAATTTCATTTCTACAGAAAGCTTGTTAAATATTTACATTCCGCGCAACTCCAAGATAGTGTTAGTGACACCTTAAGTTAAAAATAGGACTAGTCAATACTCCTGCATAGCACCCTTCTGAGATCAGATTTCTGATCTGCATTTAGCCTTGATGGAAATTTAATGTCAAACTTGATCTTCAAATTCCCTTTTTTGCCACGTTCCTTTGATATTGGCATTCCCTCATTTTGGATTATCAGCTCCTGTCCTGGTTTGACGATTTCTTTGATTGGTATTGTGAGTTCCCTTCCGTCCAAAGTAGTCAAGCTGATAGTTTTTCCAGTGAGAGCATCCAGTAACGATATTTTCTGATTCGTGACTAGATCATTTCCATCCCTCTTGAAGACAGCATGTGGCTTTTCATCAATCACAAAAATAAGATCACCCGGGGCAGCTCCATATTCATAGTCCCCTTTCTCTGGAAAAGTTATTTT</gDNA_template>
            <first_frame> Y  S  Q  L  Q  Y  L  I  Y  S  I  H  L  Q  I  K  Q  H  S  Y  *  T  T  Y  S  F  Y  I  Q  Q  K  K  M  Q  A  A  K  E  V  A  T  L  A  P  L  L  V  L  T  I  C  K  C  W  N  A  S  L  R  L  Y  P  N  M  Y  N  F  I  S  T  E  S  L  L  N  I  Y  I  P  R  N  S  K  I  V  L  V  T  P  *  V  K  N  R  T  S  Q  Y  S  C  I  A  P  F  *  D  Q  I  S  D  L  H  L  A  L  M  E  I  *  C  Q  T  *  S  S  N  S  L  F  C  H  V  P  L  I  L  A  F  P  H  F  G  L  S  A  P  V  L  V  *  R  F  L  *  L  V  L  *  V  P  F  R  P  K  *  S  S  *  *  F  F  Q  *  E  H  P  V  T  I  F  S  D  S  *  L  D  H  F  H  P  S  *  R  Q  H  V  A  F  H  Q  S  Q  K  *  D  H  P  G  Q  L  H  I  H  S  P  L  S  L  E  K  L  F  </first_frame>
            <second_frame>  T  R  N  Y  N  T  *  Y  I  V  S  T  S  K  S  N  N  T  A  I  K  L  L  T  P  F  T  S  N  K  R  K  C  K  Q  L  K  K  *  L  H  *  L  L  F  W  C  L  L  F  V  N  V  G  T  H  P  *  D  Y  I  L  I  C  T  I  S  F  L  Q  K  A  C  *  I  F  T  F  R  A  T  P  R  *  C  *  *  H  L  K  L  K  I  G  L  V  N  T  P  A  *  H  P  S  E  I  R  F  L  I  C  I  *  P  *  W  K  F  N  V  K  L  D  L  Q  I  P  F  F  A  T  F  L  *  Y  W  H  S  L  I  L  D  Y  Q  L  L  S  W  F  D  D  F  F  D  W  Y  C  E  F  P  S  V  Q  S  S  Q  A  D  S  F  S  S  E  S  I  Q  *  R  Y  F  L  I  R  D  *  I  I  S  I  P  L  E  D  S  M  W  L  F  I  N  H  K  N  K  I  T  R  G  S  S  I  F  I  V  P  F  L  W  K  S  Y  F </second_frame>
            <third_frame>   L  A  T  T  I  L  N  I  *  Y  P  P  P  N  Q  T  T  Q  L  L  N  Y  L  L  L  L  H  P  T  K  E  N  A  S  S  *  R  S  S  Y  I  S  S  S  F  G  A  Y  Y  L  *  M  L  E  R  I  L  K  I  I  S  *  Y  V  Q  F  H  F  Y  R  K  L  V  K  Y  L  H  S  A  Q  L  Q  D  S  V  S  D  T  L  S  *  K  *  D  *  S  I  L  L  H  S  T  L  L  R  S  D  F  *  S  A  F  S  L  D  G  N  L  M  S  N  L  I  F  K  F  P  F  L  P  R  S  F  D  I  G  I  P  S  F  W  I  I  S  S  C  P  G  L  T  I  S  L  I  G  I  V  S  S  L  P  S  K  V  V  K  L  I  V  F  P  V  R  A  S  S  N  D  I  F  *  F  V  T  R  S  F  P  S  L  L  K  T  A  C  G  F  S  S  I  T  K  I  R  S  P  G  A  A  P  Y  S  *  S  P  F  S  G  K  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13931" stop="14146"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAFSLDGNLMSNLIFKFPFLPRSFDIGIPSFWIISSCPGLTISLIGIVSSLPSKVVKLIVFPVRASSNDIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13665" stop="13871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTYSFYIQQKKMQAAKEVATLAPLLVLTICKCWNASLRLYPNMYNFISTESLLNIYIPRNSKIVLVTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24326" PGL_stop="24859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24326" e_stop="24419"/>
            <exon e_start="24613" e_stop="24859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24326" e_stop="24419" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24420" i_stop="24612" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24613" e_stop="24859" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24326" stop="24419"/>
              <exon start="24613" stop="24859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAACAAAAGAAAAACTTATCACTCAAATATAGAAAATGGAGAAGGCATCAAGAATCTTGTTCTCTCTTTTTGTTGTGTTCATTTTGTTAG : GTTCACCTTCATGTATGGTGATGGGACAAGGCAAGGCATGTAAAAATGTCAAAGATTGTTATACTTTATTTTGCAAACATGAACATCTAGTTTGTTTAGATGGACATTGTATATGCAATGAGTCACCAAAAGAATTTGTAGCTTCTTGCAAAAATGGTGGTGATTGTAAGAATCCATGAAAGGTGTAACAAAATATTTTATCTTATTATTCTAGTAAACTAATAATAAATATAGCTATTACCATTTT</gDNA_template>
            <first_frame> H  K  T  K  E  K  L  I  T  Q  I  *  K  M  E  K  A  S  R  I  L  F  S  L  F  V  V  F  I  L  L   : G  S  P  S  C  M  V  M  G  Q  G  K  A  C  K  N  V  K  D  C  Y  T  L  F  C  K  H  E  H  L  V  C  L  D  G  H  C  I  C  N  E  S  P  K  E  F  V  A  S  C  K  N  G  G  D  C  K  N  P  *  K  V  *  Q  N  I  L  S  Y  Y  S  S  K  L  I  I  N  I  A  I  T  I   </first_frame>
            <second_frame>  T  K  Q  K  K  N  L  S  L  K  Y  R  K  W  R  R  H  Q  E  S  C  S  L  F  L  L  C  S  F  C  *  :  V  H  L  H  V  W  *  W  D  K  A  R  H  V  K  M  S  K  I  V  I  L  Y  F  A  N  M  N  I  *  F  V  *  M  D  I  V  Y  A  M  S  H  Q  K  N  L  *  L  L  A  K  M  V  V  I  V  R  I  H  E  R  C  N  K  I  F  Y  L  I  I  L  V  N  *  *  *  I  *  L  L  P  F  </second_frame>
            <third_frame>   Q  N  K  R  K  T  Y  H  S  N  I  E  N  G  E  G  I  K  N  L  V  L  S  F  C  C  V  H  F  V  R :   F  T  F  M  Y  G  D  G  T  R  Q  G  M  *  K  C  Q  R  L  L  Y  F  I  L  Q  T  *  T  S  S  L  F  R  W  T  L  Y  M  Q  *  V  T  K  R  I  C  S  F  L  Q  K  W  W  *  L  *  E  S  M  K  G  V  T  K  Y  F  I  L  L  F  *  *  T  N  N  K  Y  S  Y  Y  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24362" stop="24419"/>
                    <exon start="24613" stop="24791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEKASRILFSLFVVFILLGSPSCMVMGQGKACKNVKDCYTLFCKHEHLVCLDGHCICNESPKEFVASCKNGGDCKNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37285" PGL_stop="37880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37285" e_stop="37369"/>
            <exon e_start="37622" e_stop="37880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.820" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37285" e_stop="37369" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.820" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37370" i_stop="37621" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37622" e_stop="37880" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37285" stop="37369"/>
              <exon start="37622" stop="37880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37285" stop="37369"/>
              <exon start="37622" stop="37880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37285" stop="37369"/>
              <exon start="37622" stop="37880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTATCTATTGAGATATAGTATACAAAATGGAGAAGACATCAATTGTTTTGCTCTCCCTTATTGCCTTGATAATTTTGTTAG : GTTCACCATCGTGTATGGCAGCAACGTGTAAAACATCAAAAGATTGTGATCCTAGAGGTTGTGGAAGTCGAGGTATGCTATGCCTTAATGGAGTTTGTGTGTGTCCCTCTGAAATAAGGAAGAATGGCTGCACCAAAGATAGTGATTGTGTAAGCCTATGTCCTCCTAAAACTTTGCCATCTTGTAATAAAGGAATTTGCTTTTGTGGACATCATGTATAACCTAATACATGTTTGAGTTATAAGAGAACATTTTTTTT</gDNA_template>
            <first_frame> I  I  I  Y  *  D  I  V  Y  K  M  E  K  T  S  I  V  L  L  S  L  I  A  L  I  I  L  L   : G  S  P  S  C  M  A  A  T  C  K  T  S  K  D  C  D  P  R  G  C  G  S  R  G  M  L  C  L  N  G  V  C  V  C  P  S  E  I  R  K  N  G  C  T  K  D  S  D  C  V  S  L  C  P  P  K  T  L  P  S  C  N  K  G  I  C  F  C  G  H  H  V  *  P  N  T  C  L  S  Y  K  R  T  F  F   </first_frame>
            <second_frame>  S  L  S  I  E  I  *  Y  T  K  W  R  R  H  Q  L  F  C  S  P  L  L  P  *  *  F  C  *  :  V  H  H  R  V  W  Q  Q  R  V  K  H  Q  K  I  V  I  L  E  V  V  E  V  E  V  C  Y  A  L  M  E  F  V  C  V  P  L  K  *  G  R  M  A  A  P  K  I  V  I  V  *  A  Y  V  L  L  K  L  C  H  L  V  I  K  E  F  A  F  V  D  I  M  Y  N  L  I  H  V  *  V  I  R  E  H  F  F  </second_frame>
            <third_frame>   H  Y  L  L  R  Y  S  I  Q  N  G  E  D  I  N  C  F  A  L  P  Y  C  L  D  N  F  V  R :   F  T  I  V  Y  G  S  N  V  *  N  I  K  R  L  *  S  *  R  L  W  K  S  R  Y  A  M  P  *  W  S  L  C  V  S  L  *  N  K  E  E  W  L  H  Q  R  *  *  L  C  K  P  M  S  S  *  N  F  A  I  L  *  *  R  N  L  L  L  W  T  S  C  I  T  *  Y  M  F  E  L  *  E  N  I  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37300" stop="37369"/>
                    <exon start="37622" stop="37842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIVYKMEKTSIVLLSLIALIILLGSPSCMAATCKTSKDCDPRGCGSRGMLCLNGVCVCPSEIRKNGCTKDSDCVSLCPPKTLPSCNKGICFCGHHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42127" PGL_stop="39226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42127" e_stop="42059"/>
            <exon e_start="41830" e_stop="41677"/>
            <exon e_start="39727" e_stop="39226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.669" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42127" e_stop="42059" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42058" i_stop="41831" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41830" e_stop="41677" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.669">
            <gDNA_intron_boundary i_start="41676" i_stop="39728" i_length="1949"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="39727" e_stop="39226" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42127" stop="42059"/>
              <exon start="41830" stop="41677"/>
              <exon start="39727" stop="39374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42126" stop="42059"/>
              <exon start="41830" stop="41677"/>
              <exon start="39727" stop="39358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41771" stop="41677"/>
              <exon start="39727" stop="39226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAGACAAATATTTGAAGAAGGACAGAGCCTTCAGCTCCAGTTCCCTGCTGAGGATCTTGGTTTCAG : GTATCGGAAAGGAGTATTGGTGTCTGAAGATGACGTTGTGGTGGATGTGCATGAAGCACCAACAGGACGAAGAAGGGATTATATTCCTTGCTCAGAACCTGGATCAAGGCTCCCTCATATGAACGTTGAACTGTTTTCTAAACCGTCAAGCAAG : GAAATATTATCTACTCTAGACCTTGTATCTATAGATAAGGTTGAGTTTATCCTTATAATTGCGCCATTCAAGGAGTCATACTGTCTAGCTCGAGCTGCACTAGAGGTGGCCAACAAATTTAAACTCCATTTAAAGGTTTGTGTAATGTGGCCAAACGGAAGTATTGACGGAGCTGGAAGAACTGAGGCTGCATTGACACCCTGGAAATCTTTTGAAGAAGTTGTGGAAGTGAAGAGGTCATCGGATTCACCATCCTGGTGGGACATCTGTCAAATGACAGACAGAGGAGCCATATTAGTGAGACCTGATGAACACGTTGCTTGGCGTTCAAAATCCAGAATTGCAGATCCCATCATGACGATGAAAAACATTTTCCACATTGTTACAGGAGTTGATTGCACGTGATAACACCTTTGAAGAAATTTTTACCCCCATTTATGTATTGTAGTCTTGACATTCATTCTCTGATATATATTAGCTAGATTACAAGGTTGAAGTACTT</gDNA_template>
            <first_frame> I  K  T  N  I  *  R  R  T  E  P  S  A  P  V  P  C  *  G  S  W  F  Q  :  V  S  E  R  S  I  G  V  *  R  *  R  C  G  G  C  A  *  S  T  N  R  T  K  K  G  L  Y  S  L  L  R  T  W  I  K  A  P  S  Y  E  R  *  T  V  F  *  T  V  K  Q   : G  N  I  I  Y  S  R  P  C  I  Y  R  *  G  *  V  Y  P  Y  N  C  A  I  Q  G  V  I  L  S  S  S  S  C  T  R  G  G  Q  Q  I  *  T  P  F  K  G  L  C  N  V  A  K  R  K  Y  *  R  S  W  K  N  *  G  C  I  D  T  L  E  I  F  *  R  S  C  G  S  E  E  V  I  G  F  T  I  L  V  G  H  L  S  N  D  R  Q  R  S  H  I  S  E  T  *  *  T  R  C  L  A  F  K  I  Q  N  C  R  S  H  H  D  D  E  K  H  F  P  H  C  Y  R  S  *  L  H  V  I  T  P  L  K  K  F  L  P  P  F  M  Y  C  S  L  D  I  H  S  L  I  Y  I  S  *  I  T  R  L  K  Y   </first_frame>
            <second_frame>  L  R  Q  I  F  E  E  G  Q  S  L  Q  L  Q  F  P  A  E  D  L  G  F  R :   Y  R  K  G  V  L  V  S  E  D  D  V  V  V  D  V  H  E  A  P  T  G  R  R  R  D  Y  I  P  C  S  E  P  G  S  R  L  P  H  M  N  V  E  L  F  S  K  P  S  S  K  :  E  I  L  S  T  L  D  L  V  S  I  D  K  V  E  F  I  L  I  I  A  P  F  K  E  S  Y  C  L  A  R  A  A  L  E  V  A  N  K  F  K  L  H  L  K  V  C  V  M  W  P  N  G  S  I  D  G  A  G  R  T  E  A  A  L  T  P  W  K  S  F  E  E  V  V  E  V  K  R  S  S  D  S  P  S  W  W  D  I  C  Q  M  T  D  R  G  A  I  L  V  R  P  D  E  H  V  A  W  R  S  K  S  R  I  A  D  P  I  M  T  M  K  N  I  F  H  I  V  T  G  V  D  C  T  *  *  H  L  *  R  N  F  Y  P  H  L  C  I  V  V  L  T  F  I  L  *  Y  I  L  A  R  L  Q  G  *  S  T  </second_frame>
            <third_frame>   *  D  K  Y  L  K  K  D  R  A  F  S  S  S  S  L  L  R  I  L  V  S   : G  I  G  K  E  Y  W  C  L  K  M  T  L  W  W  M  C  M  K  H  Q  Q  D  E  E  G  I  I  F  L  A  Q  N  L  D  Q  G  S  L  I  *  T  L  N  C  F  L  N  R  Q  A  R :   K  Y  Y  L  L  *  T  L  Y  L  *  I  R  L  S  L  S  L  *  L  R  H  S  R  S  H  T  V  *  L  E  L  H  *  R  W  P  T  N  L  N  S  I  *  R  F  V  *  C  G  Q  T  E  V  L  T  E  L  E  E  L  R  L  H  *  H  P  G  N  L  L  K  K  L  W  K  *  R  G  H  R  I  H  H  P  G  G  T  S  V  K  *  Q  T  E  E  P  Y  *  *  D  L  M  N  T  L  L  G  V  Q  N  P  E  L  Q  I  P  S  *  R  *  K  T  F  S  T  L  L  Q  E  L  I  A  R  D  N  T  F  E  E  I  F  T  P  I  Y  V  L  *  S  *  H  S  F  S  D  I  Y  *  L  D  Y  K  V  E  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42126" stop="42059"/>
                    <exon start="41830" stop="41677"/>
                    <exon start="39727" stop="39323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRQIFEEGQSLQLQFPAEDLGFRYRKGVLVSEDDVVVDVHEAPTGRRRDYIPCSEPGSRLPHMNVELFSKPSSKEILSTLDLVSIDKVEFILIIAPFKESYCLARAALEVANKFKLHLKVCVMWPNGSIDGAGRTEAALTPWKSFEEVVEVKRSSDSPSWWDICQMTDRGAILVRPDEHVAWRSKSRIADPIMTMKNIFHIVTGVDCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49695" PGL_stop="50179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49695" e_stop="50179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49695" e_stop="50179" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49695" stop="50179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGATGACCGATAAGGGTATTAGAAAAGATCCGGGTTGTAGTTTAATTGAAATTAATGGGGTTTTCCATGAGTTTTTCGCTGGAGATACATCTCATTTGCATACTAGAGAAATTTATGAGTTTTTGGATGTTATAGACAAAAGACTCCTAGCAGCAGGGTATGTTCCTGATCTGTCACACGCATCAACCGTTGATGAACTTGATAATGGGAAGAGACAGTCGCTTAAACTGCACAGTGAGAGACTTGCCATTGCTTATGGACTTCTGAAACTAAAACCAGGTACTCCTTTACGCATTTTCAAGAATTTGCGCATATGCAGTGATTGTCACAATGTAACCAAATTAATTTCGAAAGTCTTTGATGTTGAAATTATTGTTAGAGATCGTGTTCGGTTTCATCACTTTAGGAATGGGTCCTGTACCTGCAAAGATTATTGGTGAACATAATGTATACTAACATTATATGAATACAATTGTCAATTC</gDNA_template>
            <first_frame> H  *  *  P  I  R  V  L  E  K  I  R  V  V  V  *  L  K  L  M  G  F  S  M  S  F  S  L  E  I  H  L  I  C  I  L  E  K  F  M  S  F  W  M  L  *  T  K  D  S  *  Q  Q  G  M  F  L  I  C  H  T  H  Q  P  L  M  N  L  I  M  G  R  D  S  R  L  N  C  T  V  R  D  L  P  L  L  M  D  F  *  N  *  N  Q  V  L  L  Y  A  F  S  R  I  C  A  Y  A  V  I  V  T  M  *  P  N  *  F  R  K  S  L  M  L  K  L  L  L  E  I  V  F  G  F  I  T  L  G  M  G  P  V  P  A  K  I  I  G  E  H  N  V  Y  *  H  Y  M  N  T  I  V  N   </first_frame>
            <second_frame>  T  D  D  R  *  G  Y  *  K  R  S  G  L  *  F  N  *  N  *  W  G  F  P  *  V  F  R  W  R  Y  I  S  F  A  Y  *  R  N  L  *  V  F  G  C  Y  R  Q  K  T  P  S  S  R  V  C  S  *  S  V  T  R  I  N  R  *  *  T  *  *  W  E  E  T  V  A  *  T  A  Q  *  E  T  C  H  C  L  W  T  S  E  T  K  T  R  Y  S  F  T  H  F  Q  E  F  A  H  M  Q  *  L  S  Q  C  N  Q  I  N  F  E  S  L  *  C  *  N  Y  C  *  R  S  C  S  V  S  S  L  *  E  W  V  L  Y  L  Q  R  L  L  V  N  I  M  Y  T  N  I  I  *  I  Q  L  S  I  </second_frame>
            <third_frame>   L  M  T  D  K  G  I  R  K  D  P  G  C  S  L  I  E  I  N  G  V  F  H  E  F  F  A  G  D  T  S  H  L  H  T  R  E  I  Y  E  F  L  D  V  I  D  K  R  L  L  A  A  G  Y  V  P  D  L  S  H  A  S  T  V  D  E  L  D  N  G  K  R  Q  S  L  K  L  H  S  E  R  L  A  I  A  Y  G  L  L  K  L  K  P  G  T  P  L  R  I  F  K  N  L  R  I  C  S  D  C  H  N  V  T  K  L  I  S  K  V  F  D  V  E  I  I  V  R  D  R  V  R  F  H  H  F  R  N  G  S  C  T  C  K  D  Y  W  *  T  *  C  I  L  T  L  Y  E  Y  N  C  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49697" stop="50137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTDKGIRKDPGCSLIEINGVFHEFFAGDTSHLHTREIYEFLDVIDKRLLAAGYVPDLSHASTVDELDNGKRQSLKLHSERLAIAYGLLKLKPGTPLRIFKNLRICSDCHNVTKLISKVFDVEIIVRDRVRFHHFRNGSCTCKDYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="65728" PGL_stop="59410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65728" e_stop="65387"/>
            <exon e_start="64782" e_stop="64432"/>
            <exon e_start="62321" e_stop="61719"/>
            <exon e_start="60552" e_stop="60261"/>
            <exon e_start="59697" e_stop="59410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="65728" e_stop="65387" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="64782" e_stop="64432" e_length="351"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62321" e_stop="61719" e_length="603"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60552" e_stop="60261" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.945">
            <gDNA_intron_boundary i_start="60260" i_stop="59698" i_length="563"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59697" e_stop="59410" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65728" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65728" stop="65511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65726" stop="65387"/>
              <exon start="64782" stop="64499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65722" stop="65387"/>
              <exon start="64782" stop="64450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65690" stop="65387"/>
              <exon start="64782" stop="64563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65682" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65665" stop="65388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65531" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64719" stop="64432"/>
              <exon start="62321" stop="61719"/>
              <exon start="60552" stop="60261"/>
              <exon start="59697" stop="59447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62201" stop="61719"/>
              <exon start="60552" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62191" stop="61719"/>
              <exon start="60552" stop="60479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62063" stop="61719"/>
              <exon start="60552" stop="60357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60515" stop="60261"/>
              <exon start="59697" stop="59410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60316" stop="60261"/>
              <exon start="59697" stop="59434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG : GTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAG : ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG : TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG : AAGCTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACATATACACTTCCACAGAATAATTGAAAATTGAAATCTGGTGGAGTTTTTAGTTCATATTTACATTCTATGTGACATTTGG</gDNA_template>
            <first_frame> P  F  P  *  *  I  H  Y  *  Y  S  S  S  I  F  F  F  Y  L  N  S  I  Y  I  H  H  *  L  Q  F  F  F  I  K  M  D  F  F  Y  K  A  K  A  V  K  L  K  S  H  L  D  K  Y  L  V  A  D  D  D  Q  E  N  I  R  Q  S  R  N  G  S  S  R  K  A  R  W  L  V  E  L  V  E  A  E  N  S  H  F  I  R  L  K  S  G  S  G  K  Y  L  T  A  S  D  E  P  F  L  L  G  M  T  G  K  K  :  V  I  Q  T  L  P  E  E  M  K  D  L  R  I  E  W  E  V  I  R  D  G  F  Q  V  K  L  R  G  F  G  G  K  Y  L  R  A  N  G  G  M  P  P  W  R  N  K  V  T  H  D  N  P  Y  S  G  S  T  Q  N  W  I  L  W  N  V  E  P  I  D  V  P  E  N  E  S  L  T  E  Y  L  T  M  V  S  S  F  S  S  I  S  D  E  L  L  S  L  D  L  G  S  P  T  S  V  H  S  S  F  S  F  S  P  R  R  A  K  :  I  S  L  P  K  R  S  A  M  E  L  F  H  K  A  K  A  V  R  L  Q  S  H  H  E  K  Y  L  T  A  E  E  D  E  E  S  V  T  Q  D  R  N  G  A  S  K  N  A  K  W  T  V  E  F  V  E  K  T  E  N  V  I  R  L  K  S  C  Y  G  K  Y  L  T  A  S  N  Q  P  F  L  L  G  M  T  G  R  K  V  L  Q  T  L  P  N  R  L  D  S  S  I  E  W  E  P  I  R  E  G  H  Q  V  K  L  R  T  R  Y  G  Q  F  L  R  G  N  G  G  L  P  P  W  R  N  S  V  T  H  D  I  P  H  R  T  K  T  Q  D  W  V  L  W  D  V  H  V  V  E  I  L  A  H  S  T  A  E  T  V  A  E  T  T  V  V  G  G  N  S  D  S  F  A  S  E  S  S  S  A  T  T  T  G  S  S  K  S  Y  S  F  S  R  Q  E  :  S  S  D  S  L  I  S  S  P  P  K  L  V  D  G  R  L  I  Y  Y  H  V  T  D  E  F  G  E  I  D  E  G  A  E  G  L  C  I  T  F  K  G  N  S  V  E  D  L  K  K  R  L  E  E  E  T  G  L  E  D  I  T  V  C  T  R  S  A  L  N  G  K  L  Y  P  L  R  L  Q  L  P  P  N  N  A  N  M  N  V  I  I  L  P  S  S  S  K   : E  A  S  D  I  A  *  P  R  R  P  L  *  P  Y  S  W  S  T  Y  R  G  L  L  Q  *  M  D  F  C  I  S  K  I  A  *  T  C  I  S  I  V  Y  *  A  F  V  Y  K  V  L  S  I  Q  R  D  I  H  N  I  C  S  *  C  *  Y  H  H  H  T  Y  T  L  P  Q  N  N  *  K  L  K  S  G  G  V  F  S  S  Y  L  H  S  M  *  H  L  </first_frame>
            <second_frame>  P  F  H  N  K  S  I  I  N  I  P  L  Q  F  F  F  F  T  *  I  P  Y  I  F  I  T  N  Y  N  F  F  L  L  K  W  I  F  S  T  K  P  K  L  *  N  *  K  V  I  *  T  N  T  L  *  P  M  M  I  K  K  I  S  D  K  A  E  T  A  H  Q  E  K  P  G  G  L  L  N  L  L  K  P  K  T  A  T  L  Y  G  L  K  V  A  P  A  S  I  S  R  L  P  T  S  R  F  F  L  A  *  P  E  K  R :   *  F  K  L  C  P  K  K  *  R  T  *  E  S  N  G  K  *  *  G  M  D  F  K  *  N  *  G  V  L  E  E  N  I  Y  V  Q  M  E  E  C  H  H  G  E  I  K  *  H  M  I  I  H  I  V  V  V  H  K  I  G  F  C  G  T  L  N  L  L  M  C  P  K  M  N  R  *  R  N  I  *  L  W  F  Q  V  F  H  R  F  L  M  S  F  *  A  W  I  *  D  L  R  L  L  Y  I  Q  V  F  H  S  H  L  G  G  L  R :   F  L  Y  Q  K  D  Q  Q  W  S  Y  F  T  K  Q  K  L  F  V  Y  R  V  T  M  R  S  T  *  Q  L  K  K  M  K  N  Q  *  L  K  I  V  T  E  H  Q  K  T  R  N  G  Q  L  N  L  L  K  K  P  K  M  L  F  D  *  R  V  V  M  G  N  I  *  Q  L  R  I  S  H  F  F  W  V  *  L  V  E  K  F  F  K  L  C  L  I  D  L  I  L  Q  L  N  G  N  P  L  E  K  D  I  K  L  S  *  G  R  D  M  G  N  F  *  G  E  M  G  V  F  L  H  G  E  I  L  L  L  M  I  F  L  I  G  R  K  L  K  I  G  F  F  G  M  F  M  L  L  K  F  W  R  I  R  R  R  R  R  W  R  R  R  R  W  W  V  V  I  L  I  R  L  L  L  N  R  V  L  L  L  L  L  V  H  Q  N  L  T  A  F  R  D  K  S :   Q  V  I  H  *  L  V  H  R  L  S  W  *  M  E  G  L  Y  I  I  T  L  R  M  N  L  E  K  L  T  K  E  P  R  D  F  A  *  L  L  R  E  I  V  L  R  I  *  R  R  D  W  R  R  K  L  G  S  R  I  L  L  C  V  L  G  V  L  *  M  G  S  F  I  L  S  V  C  S  F  L  P  T  T  Q  I  *  T  L  L  F  C  H  L  H  L  K  :  K  L  V  I  L  H  N  Q  E  G  H  C  S  P  T  R  G  A  L  I  A  D  C  C  S  R  W  I  F  V  S  V  K  S  R  K  R  V  S  P  L  F  I  K  H  L  Y  I  R  F  *  V  F  R  E  I  Y  T  I  S  A  L  D  V  N  I  I  I  I  H  I  H  F  H  R  I  I  E  N  *  N  L  V  E  F  L  V  H  I  Y  I  L  C  D  I  W </second_frame>
            <third_frame>   L  S  I  I  N  P  L  L  I  F  L  F  N  F  F  F  L  L  K  F  H  I  Y  S  S  L  I  T  I  F  F  Y  *  N  G  F  F  L  Q  S  Q  S  C  K  I  K  K  S  S  R  Q  I  P  C  S  R  *  *  S  R  K  Y  P  T  K  P  K  R  L  I  K  K  S  P  V  A  C  *  T  C  *  S  R  K  Q  P  L  Y  T  A  *  K  W  L  R  Q  V  S  H  G  F  R  R  A  V  S  S  W  H  D  R  K  K   : G  N  S  N  F  A  R  R  N  E  G  L  E  N  R  M  G  S  N  K  G  W  I  S  S  K  I  K  G  F  W  R  K  I  F  T  C  K  W  R  N  A  T  M  E  K  *  S  N  T  *  *  S  I  *  W  *  Y  T  K  L  D  F  V  E  R  *  T  Y  *  C  A  R  K  *  I  V  D  G  I  F  N  Y  G  F  K  F  F  I  D  F  *  *  A  F  K  P  G  F  R  I  S  D  F  C  T  F  K  F  F  I  L  T  *  E  G  *   : D  F  F  T  K  K  I  S  N  G  A  I  S  Q  S  K  S  C  S  F  T  E  S  P  *  E  V  L  N  S  *  R  R  *  R  I  S  D  S  R  S  *  R  S  I  K  K  R  E  M  D  S  *  I  C  *  K  N  R  K  C  Y  S  I  E  E  L  L  W  E  I  F  N  S  F  E  S  A  I  S  S  G  Y  D  W  *  K  S  S  S  N  F  A  *  S  T  *  F  F  N  *  M  G  T  H  *  R  R  T  S  S  *  A  E  D  E  I  W  A  I  F  E  G  K  W  G  S  S  S  M  E  K  F  C  Y  S  *  Y  S  S  *  D  E  N  S  R  L  G  S  L  G  C  S  C  C  *  N  F  G  A  F  D  G  G  D  G  G  G  D  D  G  G  G  W  *  F  *  F  V  C  F  *  I  E  F  C  Y  Y  Y  W  F  I  K  I  L  Q  L  F  E  T  R   : V  K  *  F  I  D  *  F  T  A  *  V  G  R  W  K  A  Y  I  L  S  R  Y  G  *  I  W  R  N  *  R  R  S  R  G  T  L  H  N  F  *  G  K  *  C  *  G  S  K  E  E  I  G  G  G  N  W  A  R  G  Y  Y  C  V  Y  S  E  C  F  E  W  E  A  L  S  S  P  F  A  A  S  S  Q  Q  R  K  Y  E  R  Y  Y  F  A  I  F  I  *  R :   S  *  *  Y  C  I  T  K  K  A  I  V  A  L  L  V  E  H  L  S  R  I  V  A  V  D  G  F  L  Y  Q  *  N  R  V  N  V  Y  L  H  C  L  L  S  I  C  I  *  G  F  E  Y  S  E  R  Y  T  Q  Y  L  L  L  M  L  I  S  S  S  Y  I  Y  T  S  T  E  *  L  K  I  E  I  W  W  S  F  *  F  I  F  T  F  Y  V  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65647" stop="65387"/>
                    <exon start="64782" stop="64432"/>
                    <exon start="62321" stop="61719"/>
                    <exon start="60552" stop="60261"/>
                    <exon start="59697" stop="59678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFFFIKMDFFYKAKAVKLKSHLDKYLVADDDQENIRQSRNGSSRKARWLVELVEAENSHFIRLKSGSGKYLTASDEPFLLGMTGKKVIQTLPEEMKDLRIEWEVIRDGFQVKLRGFGGKYLRANGGMPPWRNKVTHDNPYSGSTQNWILWNVEPIDVPENESLTEYLTMVSSFSSISDELLSLDLGSPTSVHSSFSFSPRRAKISLPKRSAMELFHKAKAVRLQSHHEKYLTAEEDEESVTQDRNGASKNAKWTVEFVEKTENVIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPNRLDSSIEWEPIREGHQVKLRTRYGQFLRGNGGLPPWRNSVTHDIPHRTKTQDWVLWDVHVVEILAHSTAETVAETTVVGGNSDSFASESSSATTTGSSKSYSFSRQESSDSLISSPPKLVDGRLIYYHVTDEFGEIDEGAEGLCITFKGNSVEDLKKRLEEETGLEDITVCTRSALNGKLYPLRLQLPPNNANMNVIILPSSSKEASDIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65728" e_stop="65387"/>
            <exon e_start="64782" e_stop="64432"/>
            <exon e_start="62321" e_stop="61719"/>
            <exon e_start="60552" e_stop="60261"/>
            <exon e_start="59694" e_stop="59488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.132" e_score="0.969"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="65728" e_stop="65387" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65386" i_stop="64783" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="64782" e_stop="64432" e_length="351"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64431" i_stop="62322" i_length="2110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62321" e_stop="61719" e_length="603"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="60552" e_stop="60261" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.132">
            <gDNA_intron_boundary i_start="60260" i_stop="59695" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59694" e_stop="59488" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65728" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65728" stop="65511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65726" stop="65387"/>
              <exon start="64782" stop="64499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65722" stop="65387"/>
              <exon start="64782" stop="64450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65690" stop="65387"/>
              <exon start="64782" stop="64563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65682" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65665" stop="65388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65531" stop="65387"/>
              <exon start="64782" stop="64432"/>
              <exon start="62321" stop="62133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62201" stop="61719"/>
              <exon start="60552" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62191" stop="61719"/>
              <exon start="60552" stop="60479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62063" stop="61719"/>
              <exon start="60552" stop="60357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61834" stop="61719"/>
              <exon start="60552" stop="60261"/>
              <exon start="59694" stop="59493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60301" stop="60261"/>
              <exon start="59694" stop="59488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236149" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTTCCATAATAAATCCATTATTAATATTCCTCTTCAATTTTTTTTTTTTACTTAAATTCCATATATATTCATCACTAATTACAATTTTTTTTTATTAAAATGGATTTTTTCTACAAAGCCAAAGCTGTAAAATTAAAAAGTCATCTAGACAAATACCTTGTAGCCGATGATGATCAAGAAAATATCCGACAAAGCCGAAACGGCTCATCAAGAAAAGCCCGGTGGCTTGTTGAACTTGTTGAAGCCGAAAACAGCCACTTTATACGGCTTAAAAGTGGCTCCGGCAAGTATCTCACGGCTTCCGACGAGCCGTTTCTTCTTGGCATGACCGGAAAAAAG : GTAATTCAAACTTTGCCCGAAGAAATGAAGGACTTGAGAATCGAATGGGAAGTAATAAGGGATGGATTTCAAGTAAAATTAAGGGGTTTTGGAGGAAAATATTTACGTGCAAATGGAGGAATGCCACCATGGAGAAATAAAGTAACACATGATAATCCATATAGTGGTAGTACACAAAATTGGATTTTGTGGAACGTTGAACCTATTGATGTGCCCGAAAATGAATCGTTGACGGAATATTTAACTATGGTTTCAAGTTTTTCATCGATTTCTGATGAGCTTTTAAGCCTGGATTTAGGATCTCCGACTTCTGTACATTCAAGTTTTTCATTCTCACCTAGGAGGGCTAAG : ATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG : TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG : CTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACAT</gDNA_template>
            <first_frame> P  F  P  *  *  I  H  Y  *  Y  S  S  S  I  F  F  F  Y  L  N  S  I  Y  I  H  H  *  L  Q  F  F  F  I  K  M  D  F  F  Y  K  A  K  A  V  K  L  K  S  H  L  D  K  Y  L  V  A  D  D  D  Q  E  N  I  R  Q  S  R  N  G  S  S  R  K  A  R  W  L  V  E  L  V  E  A  E  N  S  H  F  I  R  L  K  S  G  S  G  K  Y  L  T  A  S  D  E  P  F  L  L  G  M  T  G  K  K  :  V  I  Q  T  L  P  E  E  M  K  D  L  R  I  E  W  E  V  I  R  D  G  F  Q  V  K  L  R  G  F  G  G  K  Y  L  R  A  N  G  G  M  P  P  W  R  N  K  V  T  H  D  N  P  Y  S  G  S  T  Q  N  W  I  L  W  N  V  E  P  I  D  V  P  E  N  E  S  L  T  E  Y  L  T  M  V  S  S  F  S  S  I  S  D  E  L  L  S  L  D  L  G  S  P  T  S  V  H  S  S  F  S  F  S  P  R  R  A  K  :  I  S  L  P  K  R  S  A  M  E  L  F  H  K  A  K  A  V  R  L  Q  S  H  H  E  K  Y  L  T  A  E  E  D  E  E  S  V  T  Q  D  R  N  G  A  S  K  N  A  K  W  T  V  E  F  V  E  K  T  E  N  V  I  R  L  K  S  C  Y  G  K  Y  L  T  A  S  N  Q  P  F  L  L  G  M  T  G  R  K  V  L  Q  T  L  P  N  R  L  D  S  S  I  E  W  E  P  I  R  E  G  H  Q  V  K  L  R  T  R  Y  G  Q  F  L  R  G  N  G  G  L  P  P  W  R  N  S  V  T  H  D  I  P  H  R  T  K  T  Q  D  W  V  L  W  D  V  H  V  V  E  I  L  A  H  S  T  A  E  T  V  A  E  T  T  V  V  G  G  N  S  D  S  F  A  S  E  S  S  S  A  T  T  T  G  S  S  K  S  Y  S  F  S  R  Q  E  :  S  S  D  S  L  I  S  S  P  P  K  L  V  D  G  R  L  I  Y  Y  H  V  T  D  E  F  G  E  I  D  E  G  A  E  G  L  C  I  T  F  K  G  N  S  V  E  D  L  K  K  R  L  E  E  E  T  G  L  E  D  I  T  V  C  T  R  S  A  L  N  G  K  L  Y  P  L  R  L  Q  L  P  P  N  N  A  N  M  N  V  I  I  L  P  S  S  S  K   : A  S  D  I  A  *  P  R  R  P  L  *  P  Y  S  W  S  T  Y  R  G  L  L  Q  *  M  D  F  C  I  S  K  I  A  *  T  C  I  S  I  V  Y  *  A  F  V  Y  K  V  L  S  I  Q  R  D  I  H  N  I  C  S  *  C  *  Y  H  H  H  T  </first_frame>
            <second_frame>  P  F  H  N  K  S  I  I  N  I  P  L  Q  F  F  F  F  T  *  I  P  Y  I  F  I  T  N  Y  N  F  F  L  L  K  W  I  F  S  T  K  P  K  L  *  N  *  K  V  I  *  T  N  T  L  *  P  M  M  I  K  K  I  S  D  K  A  E  T  A  H  Q  E  K  P  G  G  L  L  N  L  L  K  P  K  T  A  T  L  Y  G  L  K  V  A  P  A  S  I  S  R  L  P  T  S  R  F  F  L  A  *  P  E  K  R :   *  F  K  L  C  P  K  K  *  R  T  *  E  S  N  G  K  *  *  G  M  D  F  K  *  N  *  G  V  L  E  E  N  I  Y  V  Q  M  E  E  C  H  H  G  E  I  K  *  H  M  I  I  H  I  V  V  V  H  K  I  G  F  C  G  T  L  N  L  L  M  C  P  K  M  N  R  *  R  N  I  *  L  W  F  Q  V  F  H  R  F  L  M  S  F  *  A  W  I  *  D  L  R  L  L  Y  I  Q  V  F  H  S  H  L  G  G  L  R :   F  L  Y  Q  K  D  Q  Q  W  S  Y  F  T  K  Q  K  L  F  V  Y  R  V  T  M  R  S  T  *  Q  L  K  K  M  K  N  Q  *  L  K  I  V  T  E  H  Q  K  T  R  N  G  Q  L  N  L  L  K  K  P  K  M  L  F  D  *  R  V  V  M  G  N  I  *  Q  L  R  I  S  H  F  F  W  V  *  L  V  E  K  F  F  K  L  C  L  I  D  L  I  L  Q  L  N  G  N  P  L  E  K  D  I  K  L  S  *  G  R  D  M  G  N  F  *  G  E  M  G  V  F  L  H  G  E  I  L  L  L  M  I  F  L  I  G  R  K  L  K  I  G  F  F  G  M  F  M  L  L  K  F  W  R  I  R  R  R  R  R  W  R  R  R  R  W  W  V  V  I  L  I  R  L  L  L  N  R  V  L  L  L  L  L  V  H  Q  N  L  T  A  F  R  D  K  S :   Q  V  I  H  *  L  V  H  R  L  S  W  *  M  E  G  L  Y  I  I  T  L  R  M  N  L  E  K  L  T  K  E  P  R  D  F  A  *  L  L  R  E  I  V  L  R  I  *  R  R  D  W  R  R  K  L  G  S  R  I  L  L  C  V  L  G  V  L  *  M  G  S  F  I  L  S  V  C  S  F  L  P  T  T  Q  I  *  T  L  L  F  C  H  L  H  L  K  :  L  V  I  L  H  N  Q  E  G  H  C  S  P  T  R  G  A  L  I  A  D  C  C  S  R  W  I  F  V  S  V  K  S  R  K  R  V  S  P  L  F  I  K  H  L  Y  I  R  F  *  V  F  R  E  I  Y  T  I  S  A  L  D  V  N  I  I  I  I  H </second_frame>
            <third_frame>   L  S  I  I  N  P  L  L  I  F  L  F  N  F  F  F  L  L  K  F  H  I  Y  S  S  L  I  T  I  F  F  Y  *  N  G  F  F  L  Q  S  Q  S  C  K  I  K  K  S  S  R  Q  I  P  C  S  R  *  *  S  R  K  Y  P  T  K  P  K  R  L  I  K  K  S  P  V  A  C  *  T  C  *  S  R  K  Q  P  L  Y  T  A  *  K  W  L  R  Q  V  S  H  G  F  R  R  A  V  S  S  W  H  D  R  K  K   : G  N  S  N  F  A  R  R  N  E  G  L  E  N  R  M  G  S  N  K  G  W  I  S  S  K  I  K  G  F  W  R  K  I  F  T  C  K  W  R  N  A  T  M  E  K  *  S  N  T  *  *  S  I  *  W  *  Y  T  K  L  D  F  V  E  R  *  T  Y  *  C  A  R  K  *  I  V  D  G  I  F  N  Y  G  F  K  F  F  I  D  F  *  *  A  F  K  P  G  F  R  I  S  D  F  C  T  F  K  F  F  I  L  T  *  E  G  *   : D  F  F  T  K  K  I  S  N  G  A  I  S  Q  S  K  S  C  S  F  T  E  S  P  *  E  V  L  N  S  *  R  R  *  R  I  S  D  S  R  S  *  R  S  I  K  K  R  E  M  D  S  *  I  C  *  K  N  R  K  C  Y  S  I  E  E  L  L  W  E  I  F  N  S  F  E  S  A  I  S  S  G  Y  D  W  *  K  S  S  S  N  F  A  *  S  T  *  F  F  N  *  M  G  T  H  *  R  R  T  S  S  *  A  E  D  E  I  W  A  I  F  E  G  K  W  G  S  S  S  M  E  K  F  C  Y  S  *  Y  S  S  *  D  E  N  S  R  L  G  S  L  G  C  S  C  C  *  N  F  G  A  F  D  G  G  D  G  G  G  D  D  G  G  G  W  *  F  *  F  V  C  F  *  I  E  F  C  Y  Y  Y  W  F  I  K  I  L  Q  L  F  E  T  R   : V  K  *  F  I  D  *  F  T  A  *  V  G  R  W  K  A  Y  I  L  S  R  Y  G  *  I  W  R  N  *  R  R  S  R  G  T  L  H  N  F  *  G  K  *  C  *  G  S  K  E  E  I  G  G  G  N  W  A  R  G  Y  Y  C  V  Y  S  E  C  F  E  W  E  A  L  S  S  P  F  A  A  S  S  Q  Q  R  K  Y  E  R  Y  Y  F  A  I  F  I  *  S :   *  *  Y  C  I  T  K  K  A  I  V  A  L  L  V  E  H  L  S  R  I  V  A  V  D  G  F  L  Y  Q  *  N  R  V  N  V  Y  L  H  C  L  L  S  I  C  I  *  G  F  E  Y  S  E  R  Y  T  Q  Y  L  L  L  M  L  I  S  S  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65647" stop="65387"/>
                    <exon start="64782" stop="64432"/>
                    <exon start="62321" stop="61719"/>
                    <exon start="60552" stop="60261"/>
                    <exon start="59694" stop="59678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFFFIKMDFFYKAKAVKLKSHLDKYLVADDDQENIRQSRNGSSRKARWLVELVEAENSHFIRLKSGSGKYLTASDEPFLLGMTGKKVIQTLPEEMKDLRIEWEVIRDGFQVKLRGFGGKYLRANGGMPPWRNKVTHDNPYSGSTQNWILWNVEPIDVPENESLTEYLTMVSSFSSISDELLSLDLGSPTSVHSSFSFSPRRAKISLPKRSAMELFHKAKAVRLQSHHEKYLTAEEDEESVTQDRNGASKNAKWTVEFVEKTENVIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPNRLDSSIEWEPIREGHQVKLRTRYGQFLRGNGGLPPWRNSVTHDIPHRTKTQDWVLWDVHVVEILAHSTAETVAETTVVGGNSDSFASESSSATTTGSSKSYSFSRQESSDSLISSPPKLVDGRLIYYHVTDEFGEIDEGAEGLCITFKGNSVEDLKKRLEEETGLEDITVCTRSALNGKLYPLRLQLPPNNANMNVIILPSSSKASDIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62405" e_stop="61719"/>
            <exon e_start="60552" e_stop="60261"/>
            <exon e_start="59694" e_stop="59488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.132" e_score="0.969"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62405" e_stop="61719" e_length="687"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61718" i_stop="60553" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="60552" e_stop="60261" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.132">
            <gDNA_intron_boundary i_start="60260" i_stop="59695" i_length="566"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59694" e_stop="59488" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62405" stop="61889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62201" stop="61719"/>
              <exon start="60552" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62191" stop="61719"/>
              <exon start="60552" stop="60479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62063" stop="61719"/>
              <exon start="60552" stop="60357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61834" stop="61719"/>
              <exon start="60552" stop="60261"/>
              <exon start="59694" stop="59493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60301" stop="60261"/>
              <exon start="59694" stop="59488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236149" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATCCAATCTTTTCTCAACCCCAAGTTTTAAATCCTTAAAATTTTCACAAATTTCATAATTTTTGGTGTTGTTTTTGACAGATTTCTTTACCAAAAAGATCAGCAATGGAGCTATTTCACAAAGCAAAAGCTGTTCGTTTACAGAGTCACCATGAGAAGTACTTAACAGCTGAAGAAGATGAAGAATCAGTGACTCAAGATCGTAACGGAGCATCAAAAAACGCGAAATGGACAGTTGAATTTGTTGAAAAAACCGAAAATGTTATTCGATTGAAGAGTTGTTATGGGAAATATTTAACAGCTTCGAATCAGCCATTTCTTCTGGGTATGACTGGTAGAAAAGTTCTTCAAACTTTGCCTAATCGACTTGATTCTTCAATTGAATGGGAACCCATTAGAGAAGGACATCAAGTTAAGCTGAGGACGAGATATGGGCAATTTTTGAGGGGAAATGGGGGTCTTCCTCCATGGAGAAATTCTGTTACTCATGATATTCCTCATAGGACGAAAACTCAAGATTGGGTTCTTTGGGATGTTCATGTTGTTGAAATTTTGGCGCATTCGACGGCGGAGACGGTGGCGGAGACGACGGTGGTGGGTGGTAATTCTGATTCGTTTGCTTCTGAATCGAGTTCTGCTACTACTACTGGTTCATCAAAATCTTACAGCTTTTCGAGACAAGAG : TCAAGTGATTCATTGATTAGTTCACCGCCTAAGTTGGTAGATGGAAGGCTTATATATTATCACGTTACGGATGAATTTGGAGAAATTGACGAAGGAGCCGAGGGACTTTGCATAACTTTTAAGGGAAATAGTGTTGAGGATCTAAAGAAGAGATTGGAGGAGGAAACTGGGCTCGAGGATATTACTGTGTGTACTCGGAGTGCTTTGAATGGGAAGCTTTATCCTCTCCGTTTGCAGCTTCCTCCCAACAACGCAAATATGAACGTTATTATTTTGCCATCTTCATCTAAAG : CTAGTGATATTGCATAACCAAGAAGGCCATTGTAGCCCTACTCGTGGAGCACTTATCGCGGATTGTTGCAGTAGATGGATTTTTGTATCAGTAAAATCGCGTAAACGTGTATCTCCATTGTTTATTAAGCATTTGTATATAAGGTTTTGAGTATTCAGAGAGATATACACAATATCTGCTCTTGATGTTAATATCATCATCATACAT</gDNA_template>
            <first_frame> E  N  P  I  F  S  Q  P  Q  V  L  N  P  *  N  F  H  K  F  H  N  F  W  C  C  F  *  Q  I  S  L  P  K  R  S  A  M  E  L  F  H  K  A  K  A  V  R  L  Q  S  H  H  E  K  Y  L  T  A  E  E  D  E  E  S  V  T  Q  D  R  N  G  A  S  K  N  A  K  W  T  V  E  F  V  E  K  T  E  N  V  I  R  L  K  S  C  Y  G  K  Y  L  T  A  S  N  Q  P  F  L  L  G  M  T  G  R  K  V  L  Q  T  L  P  N  R  L  D  S  S  I  E  W  E  P  I  R  E  G  H  Q  V  K  L  R  T  R  Y  G  Q  F  L  R  G  N  G  G  L  P  P  W  R  N  S  V  T  H  D  I  P  H  R  T  K  T  Q  D  W  V  L  W  D  V  H  V  V  E  I  L  A  H  S  T  A  E  T  V  A  E  T  T  V  V  G  G  N  S  D  S  F  A  S  E  S  S  S  A  T  T  T  G  S  S  K  S  Y  S  F  S  R  Q  E  :  S  S  D  S  L  I  S  S  P  P  K  L  V  D  G  R  L  I  Y  Y  H  V  T  D  E  F  G  E  I  D  E  G  A  E  G  L  C  I  T  F  K  G  N  S  V  E  D  L  K  K  R  L  E  E  E  T  G  L  E  D  I  T  V  C  T  R  S  A  L  N  G  K  L  Y  P  L  R  L  Q  L  P  P  N  N  A  N  M  N  V  I  I  L  P  S  S  S  K   : A  S  D  I  A  *  P  R  R  P  L  *  P  Y  S  W  S  T  Y  R  G  L  L  Q  *  M  D  F  C  I  S  K  I  A  *  T  C  I  S  I  V  Y  *  A  F  V  Y  K  V  L  S  I  Q  R  D  I  H  N  I  C  S  *  C  *  Y  H  H  H  T  </first_frame>
            <second_frame>  K  I  Q  S  F  L  N  P  K  F  *  I  L  K  I  F  T  N  F  I  I  F  G  V  V  F  D  R  F  L  Y  Q  K  D  Q  Q  W  S  Y  F  T  K  Q  K  L  F  V  Y  R  V  T  M  R  S  T  *  Q  L  K  K  M  K  N  Q  *  L  K  I  V  T  E  H  Q  K  T  R  N  G  Q  L  N  L  L  K  K  P  K  M  L  F  D  *  R  V  V  M  G  N  I  *  Q  L  R  I  S  H  F  F  W  V  *  L  V  E  K  F  F  K  L  C  L  I  D  L  I  L  Q  L  N  G  N  P  L  E  K  D  I  K  L  S  *  G  R  D  M  G  N  F  *  G  E  M  G  V  F  L  H  G  E  I  L  L  L  M  I  F  L  I  G  R  K  L  K  I  G  F  F  G  M  F  M  L  L  K  F  W  R  I  R  R  R  R  R  W  R  R  R  R  W  W  V  V  I  L  I  R  L  L  L  N  R  V  L  L  L  L  L  V  H  Q  N  L  T  A  F  R  D  K  S :   Q  V  I  H  *  L  V  H  R  L  S  W  *  M  E  G  L  Y  I  I  T  L  R  M  N  L  E  K  L  T  K  E  P  R  D  F  A  *  L  L  R  E  I  V  L  R  I  *  R  R  D  W  R  R  K  L  G  S  R  I  L  L  C  V  L  G  V  L  *  M  G  S  F  I  L  S  V  C  S  F  L  P  T  T  Q  I  *  T  L  L  F  C  H  L  H  L  K  :  L  V  I  L  H  N  Q  E  G  H  C  S  P  T  R  G  A  L  I  A  D  C  C  S  R  W  I  F  V  S  V  K  S  R  K  R  V  S  P  L  F  I  K  H  L  Y  I  R  F  *  V  F  R  E  I  Y  T  I  S  A  L  D  V  N  I  I  I  I  H </second_frame>
            <third_frame>   K  S  N  L  F  S  T  P  S  F  K  S  L  K  F  S  Q  I  S  *  F  L  V  L  F  L  T  D  F  F  T  K  K  I  S  N  G  A  I  S  Q  S  K  S  C  S  F  T  E  S  P  *  E  V  L  N  S  *  R  R  *  R  I  S  D  S  R  S  *  R  S  I  K  K  R  E  M  D  S  *  I  C  *  K  N  R  K  C  Y  S  I  E  E  L  L  W  E  I  F  N  S  F  E  S  A  I  S  S  G  Y  D  W  *  K  S  S  S  N  F  A  *  S  T  *  F  F  N  *  M  G  T  H  *  R  R  T  S  S  *  A  E  D  E  I  W  A  I  F  E  G  K  W  G  S  S  S  M  E  K  F  C  Y  S  *  Y  S  S  *  D  E  N  S  R  L  G  S  L  G  C  S  C  C  *  N  F  G  A  F  D  G  G  D  G  G  G  D  D  G  G  G  W  *  F  *  F  V  C  F  *  I  E  F  C  Y  Y  Y  W  F  I  K  I  L  Q  L  F  E  T  R   : V  K  *  F  I  D  *  F  T  A  *  V  G  R  W  K  A  Y  I  L  S  R  Y  G  *  I  W  R  N  *  R  R  S  R  G  T  L  H  N  F  *  G  K  *  C  *  G  S  K  E  E  I  G  G  G  N  W  A  R  G  Y  Y  C  V  Y  S  E  C  F  E  W  E  A  L  S  S  P  F  A  A  S  S  Q  Q  R  K  Y  E  R  Y  Y  F  A  I  F  I  *  S :   *  *  Y  C  I  T  K  K  A  I  V  A  L  L  V  E  H  L  S  R  I  V  A  V  D  G  F  L  Y  Q  *  N  R  V  N  V  Y  L  H  C  L  L  S  I  C  I  *  G  F  E  Y  S  E  R  Y  T  Q  Y  L  L  L  M  L  I  S  S  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62324" stop="61719"/>
                    <exon start="60552" stop="60261"/>
                    <exon start="59694" stop="59678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISLPKRSAMELFHKAKAVRLQSHHEKYLTAEEDEESVTQDRNGASKNAKWTVEFVEKTENVIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPNRLDSSIEWEPIREGHQVKLRTRYGQFLRGNGGLPPWRNSVTHDIPHRTKTQDWVLWDVHVVEILAHSTAETVAETTVVGGNSDSFASESSSATTTGSSKSYSFSRQESSDSLISSPPKLVDGRLIYYHVTDEFGEIDEGAEGLCITFKGNSVEDLKKRLEEETGLEDITVCTRSALNGKLYPLRLQLPPNNANMNVIILPSSSKASDIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="81225" PGL_stop="75082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81225" e_stop="81113"/>
            <exon e_start="80977" e_stop="80825"/>
            <exon e_start="80740" e_stop="80642"/>
            <exon e_start="79956" e_stop="79855"/>
            <exon e_start="79632" e_stop="79489"/>
            <exon e_start="78925" e_stop="78831"/>
            <exon e_start="78748" e_stop="78619"/>
            <exon e_start="78541" e_stop="78437"/>
            <exon e_start="77889" e_stop="77783"/>
            <exon e_start="77708" e_stop="77657"/>
            <exon e_start="77060" e_stop="76971"/>
            <exon e_start="76877" e_stop="76793"/>
            <exon e_start="76392" e_stop="76328"/>
            <exon e_start="75532" e_stop="75082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.853" acc_prob="0.941" e_score="0.967"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="0.961"/>
          <exon-intron don_prob="0.968" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.458" acc_prob="0.681" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="81225" e_stop="81113" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81112" i_stop="80978" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="80977" e_stop="80825" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.853" acc_prob="0.941">
            <gDNA_intron_boundary i_start="80824" i_stop="80741" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="80740" e_stop="80642" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="80641" i_stop="79957" i_length="685"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="79956" e_stop="79855" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79854" i_stop="79633" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79632" e_stop="79489" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.625">
            <gDNA_intron_boundary i_start="79488" i_stop="78926" i_length="563"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78925" e_stop="78831" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.606">
            <gDNA_intron_boundary i_start="78830" i_stop="78749" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78748" e_stop="78619" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.958" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78541" e_stop="78437" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.458" acc_prob="0.681">
            <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77889" e_stop="77783" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.685" acc_prob="0.943">
            <gDNA_intron_boundary i_start="77782" i_stop="77709" i_length="74"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77657" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77656" i_stop="77061" i_length="596"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="77060" e_stop="76971" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="76877" e_stop="76793" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.956" acc_prob="0.984">
            <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="76392" e_stop="76328" e_length="65"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795"/>
          </intron>
          <exon e_serial="14" e_score="0.996">
            <gDNA_exon_boundary e_start="75532" e_stop="75082" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81225" stop="81113"/>
              <exon start="80977" stop="80825"/>
              <exon start="80740" stop="80642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81216" stop="81113"/>
              <exon start="80977" stop="80825"/>
              <exon start="80740" stop="80717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80902" stop="80825"/>
              <exon start="80740" stop="80642"/>
              <exon start="79956" stop="79855"/>
              <exon start="79632" stop="79489"/>
              <exon start="78925" stop="78831"/>
              <exon start="78748" stop="78619"/>
              <exon start="78541" stop="78529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79882" stop="79855"/>
              <exon start="79632" stop="79489"/>
              <exon start="78925" stop="78831"/>
              <exon start="78748" stop="78619"/>
              <exon start="78541" stop="78437"/>
              <exon start="77889" stop="77838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79513" stop="79489"/>
              <exon start="78925" stop="78831"/>
              <exon start="78748" stop="78619"/>
              <exon start="78541" stop="78437"/>
              <exon start="77889" stop="77817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78925" stop="78831"/>
              <exon start="78748" stop="78698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78690" stop="78619"/>
              <exon start="78541" stop="78437"/>
              <exon start="77889" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78460" stop="78437"/>
              <exon start="77889" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77806" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77045" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77045" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77041" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAG : GTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTA : GAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGTTGAACTACACTTAAAG : CTGCTTAAGGATTTCCCAAGAGATCTGGTCACGGTAAAGCGCGCTCAAGTGCTCTCTTTCTACATGGGTCGCCCTGATTTGTCTCTGAAACTTGTTGAACAG : GTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCT : CTCTGTCATGTTTATCAGTATGAGTGTCGTTTTAAAGAAGCAGTACAATTTATGGAGGAGTGCTCAAGAACCTGGAGTTCTTTGTCATCTTTTAT : GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA : GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAA : GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAG : AATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTG : CTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG : ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG : CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG : GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATAG</gDNA_template>
            <first_frame> K  N  P  P  T  S  R  K  W  K  N  S  K  *  T  N  G  V  I  K  *  R  L  V  L  I  L  A  Y  L  P  L  I  L  I  I  I  R :   Y  L  A  M  E  E  R  G  Q  L  Y  W  K  L  Q  N  K  T  Q  L  V  F  W  L  I  F  W  L  L  I  F  F  V  L  L  I  L  R  V  L  C  H  F  L  K  L  P  S  L  V  * :   N  K  L  A  C  M  R  K  W  F  L  R  *  *  V  I  *  F  Y  L  I  E  M  M  M  W  L  L  N  Y  T  *  S :   C  L  R  I  S  Q  E  I  W  S  R  *  S  A  L  K  C  S  L  S  T  W  V  A  L  I  C  L  *  N  L  L  N  R :   S  Y  Q  *  I  N  M  E  D  T  F  M  A  C  S  H  L  P  Y  W  S  L  V  D  M  R  R  Q  K  K  L  Q  R  K  A  L  R  L  I  V  K  M  P  G  H  T  M  L :   S  V  M  F  I  S  M  S  V  V  L  K  K  Q  Y  N  L  W  R  S  A  Q  E  P  G  V  L  C  H  L  L   : C  I  H  T  I  G  G  M  L  R  F  V  I  W  K  V  I  R  P  W  K  K  *  E  M  F  M  I  K  T  S  G  K  S  W  K  E  L  M  P  V  *  P  K :   C  T  *  M  L  L  V  C  Y  S  G  Y  I  Y  E  V  G  L  I  Y  L  G  T  V  *  R  S  *  L  I  V  *  Q  I  K :   H  S  G  I  L  N  G  T  W  M  Y  W  C  Y  G  P  Y  P  I  Q  A  K  F  L  K  Q  K  S  Y  S  R  V  *  S  P   : E  F  L  P  *  P  R  K  N  E  N  I  C  K  E  L  C  C :   L  Q  K  C  Y  S  N  M  V  R  V  K  M  N  G  H  W  N  C  S  D  K  H  L  M  P  L  T  T  R :   L  L  E  H  Q  T  S  S  L  M  F  L  M  K  F  G  S  L  C  C  *  T  V  V  G  L  Q  K  :  L  L  R  Q  *  R  C  S  *  K  R  G  K  E  P  R  S  C  G  A  S  W :   K  K  V  I  H  Q  C  Q  E  T  K  K  L  Y  K  Q  A  K  K  L  S  H  W  K  V  H  T  S  T  N  L  G  K  R  M  I  T  I  Q  N  K  L  F  C  T  P  L  K  C  *  *  F  S  P  L  V  S  L  S  S  S  R  M  C  S  K  V  S  P  C  C  V  F  I  S  S  V  P  P  S  Q  F  Y  R  W  *  G  R  R  H  L  *  G  E  Q  D  S  K  L  G  S  P  *  I  I  S  F  F  H  N  G  D  I  Q  I  R  L  L  I  S  C  T  C  Y  L  S  P  A  Q  V  E  K  N  L  Q  N  L  E  *  M  K  *  Y  F  D  L  S  M  K  * </first_frame>
            <second_frame>  R  T  H  Q  L  Q  E  N  G  R  I  Q  S  R  Q  M  G  L  S  S  E  D  *  F  *  F  L  H  I  C  H  *  F  L  L  S  S   : G  T  *  L  W  K  R  E  V  S  Y  I  G  S  S  K  T  R  P  N  L  C  F  G  *  Y  F  G  C  S  F  S  L  F  C  *  F  F  A  C  Y  A  T  S  *  S  C  Q  V  L  S   : R  T  S  *  L  V  *  E  S  G  F  *  G  S  K  L  F  D  F  T  *  *  R  *  *  C  G  C  *  T  T  L  K   : A  A  *  G  F  P  K  R  S  G  H  G  K  A  R  S  S  A  L  F  L  H  G  S  P  *  F  V  S  E  T  C  *  T   : G  P  T  S  K  *  T  W  K  I  H  L  W  H  A  R  I  C  P  I  G  A  W  S  I  C  G  G  K  R  S  C  K  E  R  L  *  D  *  *  *  R  C  L  D  T  P  C   : S  L  S  C  L  S  V  *  V  S  F  *  R  S  S  T  I  Y  G  G  V  L  K  N  L  E  F  F  V  I  F  Y  :  V  Y  T  Q  L  V  A  C  C  A  L  L  Y  G  R  S  F  A  H  G  K  S  K  R  C  L  *  S  K  H  L  E  R  V  G  K  N  *  C  Q  F  S  R   : S  V  L  E  C  C  W  F  V  T  P  G  I  F  T  R  W  D  *  Y  I  W  G  P  F  K  D  P  S  *  S  S  D  R  *   : S  I  L  V  S  *  M  A  P  G  C  I  G  V  M  G  P  I  L  Y  R  R  S  F  *  S  R  R  V  T  R  G  F  E  V  Q  :  N  F  Y  H  D  Q  E  K  T  R  I  Y  A  K  S  C  A   : A  C  R  S  V  I  R  I  W  *  G  *  K  *  T  G  I  G  I  A  R  T  N  I  *  C  H  *  L  Q   : D  Y  W  S  I  R  R  A  A  *  C  F  *  *  S  L  D  H  Y  V  A  K  Q  W  S  G  Y  K  S :   Y  *  G  N  R  D  A  A  K  K  E  G  R  N  P  V  L  V  A  P  P   : G  K  R  L  F  I  N  V  K  K  P  R  S  Y  T  S  R  Q  K  S  S  V  I  G  R  C  I  L  Q  L  I  L  A  K  G  *  *  L  S  K  I  N  S  F  A  H  L  S  N  V  S  D  F  H  L  L  Y  P  S  P  L  V  E  C  V  V  K  S  L  H  V  V  Y  L  *  A  V  S  P  Q  A  N  S  I  V  G  E  G  G  D  T  C  R  E  N  K  T  Q  N  S  E  V  L  K  *  S  L  F  F  I  T  V  I  F  R  S  D  C  *  F  H  V  H  V  I  F  H  Q  H  R  *  R  R  T  Y  K  I  L  N  K  *  S  S  I  L  I  C  Q  *  N   </second_frame>
            <third_frame>   E  P  T  N  F  K  K  M  E  E  F  K  V  D  K  W  G  Y  Q  V  K  T  S  S  D  S  C  I  S  A  I  N  S  Y  Y  H  Q  :  V  L  S  Y  G  R  E  R  S  V  I  L  E  A  P  K  Q  D  P  T  C  V  L  A  N  I  L  A  A  H  F  L  C  S  A  D  S  S  R  A  M  P  L  L  E  A  A  K  S  C  L  :  E  Q  A  S  L  Y  E  K  V  V  F  E  V  V  S  Y  L  I  L  P  N  R  D  D  D  V  A  V  E  L  H  L  K  :  L  L  K  D  F  P  R  D  L  V  T  V  K  R  A  Q  V  L  S  F  Y  M  G  R  P  D  L  S  L  K  L  V  E  Q  :  V  L  P  V  N  K  H  G  R  Y  I  Y  G  M  L  A  F  A  L  L  E  L  G  R  Y  A  E  A  K  E  A  A  K  K  G  F  E  I  D  S  E  D  A  W  T  H  H  A  :  L  C  H  V  Y  Q  Y  E  C  R  F  K  E  A  V  Q  F  M  E  E  C  S  R  T  W  S  S  L  S  S  F  M :   Y  T  H  N  W  W  H  V  A  L  C  Y  M  E  G  H  S  P  M  E  K  V  R  D  V  Y  D  Q  N  I  W  K  E  L  E  R  I  D  A  S  L  A  E  :  V  Y  L  N  A  V  G  L  L  L  R  V  Y  L  R  G  G  I  N  I  F  G  D  R  L  K  I  L  A  D  R  L  T  D  K  :  A  F  W  Y  L  E  W  H  L  D  V  L  V  L  W  A  L  S  Y  T  G  E  V  S  K  A  E  E  L  L  E  G  L  K  S  R :   I  S  T  M  T  K  K  K  R  E  Y  M  Q  R  A  V  L  :  L  A  E  V  L  F  E  Y  G  K  G  E  N  E  R  A  L  E  L  L  G  Q  T  F  D  A  I  D  Y  K  :  I  I  G  A  S  D  E  Q  L  D  V  F  N  E  V  W  I  T  M  L  L  N  S  G  R  A  T  K   : A  I  E  A  I  E  M  Q  L  K  K  R  E  G  T  P  F  L  W  R  L  L  :  E  K  G  Y  S  S  M  S  R  N  Q  E  A  I  Q  A  G  K  K  A  Q  S  L  E  G  A  Y  F  N  *  S  W  Q  K  D  D  N  Y  P  K  *  T  L  L  H  T  S  Q  M  L  V  I  F  T  S  C  I  P  L  L  *  *  N  V  *  *  S  L  S  M  L  C  I  Y  K  Q  C  P  P  K  P  I  L  S  L  V  R  A  E  T  L  V  G  R  T  R  L  K  T  R  K  S  L  N  N  L  F  F  S  *  R  *  Y  S  D  Q  I  V  D  F  M  Y  M  L  S  F  T  S  T  G  R  E  E  L  T  K  S  *  I  N  E  V  V  F  *  F  V  N  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81223" stop="81113"/>
                    <exon start="80977" stop="80825"/>
                    <exon start="80740" stop="80642"/>
                    <exon start="79956" stop="79855"/>
                    <exon start="79632" stop="79489"/>
                    <exon start="78925" stop="78831"/>
                    <exon start="78748" stop="78619"/>
                    <exon start="78541" stop="78437"/>
                    <exon start="77889" stop="77783"/>
                    <exon start="77708" stop="77657"/>
                    <exon start="77060" stop="76971"/>
                    <exon start="76877" stop="76793"/>
                    <exon start="76392" stop="76328"/>
                    <exon start="75532" stop="75443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPTNFKKMEEFKVDKWGYQVKTSSDSCISAINSYYHQVLSYGRERSVILEAPKQDPTCVLANILAAHFLCSADSSRAMPLLEAAKSCLEQASLYEKVVFEVVSYLILPNRDDDVAVELHLKLLKDFPRDLVTVKRAQVLSFYMGRPDLSLKLVEQVLPVNKHGRYIYGMLAFALLELGRYAEAKEAAKKGFEIDSEDAWTHHALCHVYQYECRFKEAVQFMEECSRTWSSLSSFMYTHNWWHVALCYMEGHSPMEKVRDVYDQNIWKELERIDASLAEVYLNAVGLLLRVYLRGGINIFGDRLKILADRLTDKAFWYLEWHLDVLVLWALSYTGEVSKAEELLEGLKSRISTMTKKKREYMQRAVLLAEVLFEYGKGENERALELLGQTFDAIDYKIIGASDEQLDVFNEVWITMLLNSGRATKAIEAIEMQLKKREGTPFLWRLLEKGYSSMSRNQEAIQAGKKAQSLEGAYFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79868" e_stop="79855"/>
            <exon e_start="79632" e_stop="79489"/>
            <exon e_start="78748" e_stop="78619"/>
            <exon e_start="78541" e_stop="78437"/>
            <exon e_start="77889" e_stop="77783"/>
            <exon e_start="77708" e_stop="77657"/>
            <exon e_start="77060" e_stop="76971"/>
            <exon e_start="76877" e_stop="76793"/>
            <exon e_start="76392" e_stop="76328"/>
            <exon e_start="75532" e_stop="75082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.458" acc_prob="0.681" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79868" e_stop="79855" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79854" i_stop="79633" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79632" e_stop="79489" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.606">
            <gDNA_intron_boundary i_start="79488" i_stop="78749" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78748" e_stop="78619" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.990">
            <gDNA_intron_boundary i_start="78618" i_stop="78542" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78541" e_stop="78437" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.458" acc_prob="0.681">
            <gDNA_intron_boundary i_start="78436" i_stop="77890" i_length="547"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77889" e_stop="77783" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.685" acc_prob="0.943">
            <gDNA_intron_boundary i_start="77782" i_stop="77709" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77657" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77656" i_stop="77061" i_length="596"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77060" e_stop="76971" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76970" i_stop="76878" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76877" e_stop="76793" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.984">
            <gDNA_intron_boundary i_start="76792" i_stop="76393" i_length="400"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="76392" e_stop="76328" e_length="65"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="76327" i_stop="75533" i_length="795"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="75532" e_stop="75082" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79868" stop="79855"/>
              <exon start="79632" stop="79489"/>
              <exon start="78748" stop="78619"/>
              <exon start="78541" stop="78437"/>
              <exon start="77889" stop="77870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78690" stop="78619"/>
              <exon start="78541" stop="78437"/>
              <exon start="77889" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78460" stop="78437"/>
              <exon start="77889" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77806" stop="77783"/>
              <exon start="77708" stop="77657"/>
              <exon start="77060" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77045" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77045" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77044" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77041" stop="76971"/>
              <exon start="76877" stop="76793"/>
              <exon start="76392" stop="76328"/>
              <exon start="75532" stop="75083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTGTTGAACAG : GTCCTACCAGTAAATAAACATGGAAGATACATTTATGGCATGCTCGCATTTGCCCTATTGGAGCTTGGTCGATATGCGGAGGCAAAAGAAGCTGCAAAGAAAGGCTTTGAGATTGATAGTGAAGATGCCTGGACACACCATGCT : GTATACACACAATTGGTGGCATGTTGCGCTTTGTTATATGGAAGGTCATTCGCCCATGGAAAAAGTAAGAGATGTTTATGATCAAAACATCTGGAAAGAGTTGGAAAGAATTGATGCCAGTTTAGCCGAA : GTGTACTTGAATGCTGTTGGTTTGTTACTCCGGGTATATTTACGAGGTGGGATTAATATATTTGGGGACCGTTTAAAGATCCTAGCTGATCGTCTGACAGATAAA : GCATTCTGGTATCTTGAATGGCACCTGGATGTATTGGTGTTATGGGCCCTATCCTATACAGGCGAAGTTTCTAAAGCAGAAGAGTTACTCGAGGGTTTGAAGTCCAG : AATTTCTACCATGACCAAGAAAAAACGAGAATATATGCAAAGAGCTGTGCTG : CTTGCAGAAGTGTTATTCGAATATGGTAAGGGTGAAAATGAACGGGCATTGGAATTGCTCGGACAAACATTTGATGCCATTGACTACAAG : ATTATTGGAGCATCAGACGAGCAGCTTGATGTTTTTAATGAAGTTTGGATCACTATGTTGCTAAACAGTGGTCGGGCTACAAAAG : CTATTGAGGCAATAGAGATGCAGCTAAAAAAGAGGGAAGGAACCCCGTTCTTGTGGCGCCTCCTG : GAAAAAGGTTATTCATCAATGTCAAGAAACCAAGAAGCTATACAAGCAGGCAAAAAAGCTCAGTCATTGGAAGGTGCATACTTCAACTAATCTTGGCAAAAGGATGATAACTATCCAAAATAAACTCTTTTGCACACCTCTCAAATGTTAGTGATTTTCACCTCTTGTATCCCTCTCCTCTAGTAGAATGTGTAGTAAAGTCTCTCCATGTTGTGTATTTATAAGCAGTGTCCCCCCAAGCCAATTCTATCGTTGGTGAGGGCGGAGACACTTGTAGGGAGAACAAGACTCAAAACTCGGAAGTCCTTAAATAATCTCTTTTTTTCATAACGGTGATATTCAGATCAGATTGTTGATTTCATGTACATGTTATCTTTCACCAGCACAGGTAGAGAAGAACTTACAAAATCTTGAATAAATGAAGTAGTATTTTGATTTGTCAATGAAATAG</gDNA_template>
            <first_frame> N  L  L  N  R :   S  Y  Q  *  I  N  M  E  D  T  F  M  A  C  S  H  L  P  Y  W  S  L  V  D  M  R  R  Q  K  K  L  Q  R  K  A  L  R  L  I  V  K  M  P  G  H  T  M  L :   Y  T  H  N  W  W  H  V  A  L  C  Y  M  E  G  H  S  P  M  E  K  V  R  D  V  Y  D  Q  N  I  W  K  E  L  E  R  I  D  A  S  L  A  E  :  V  Y  L  N  A  V  G  L  L  L  R  V  Y  L  R  G  G  I  N  I  F  G  D  R  L  K  I  L  A  D  R  L  T  D  K  :  A  F  W  Y  L  E  W  H  L  D  V  L  V  L  W  A  L  S  Y  T  G  E  V  S  K  A  E  E  L  L  E  G  L  K  S  R :   I  S  T  M  T  K  K  K  R  E  Y  M  Q  R  A  V  L  :  L  A  E  V  L  F  E  Y  G  K  G  E  N  E  R  A  L  E  L  L  G  Q  T  F  D  A  I  D  Y  K  :  I  I  G  A  S  D  E  Q  L  D  V  F  N  E  V  W  I  T  M  L  L  N  S  G  R  A  T  K   : A  I  E  A  I  E  M  Q  L  K  K  R  E  G  T  P  F  L  W  R  L  L  :  E  K  G  Y  S  S  M  S  R  N  Q  E  A  I  Q  A  G  K  K  A  Q  S  L  E  G  A  Y  F  N  *  S  W  Q  K  D  D  N  Y  P  K  *  T  L  L  H  T  S  Q  M  L  V  I  F  T  S  C  I  P  L  L  *  *  N  V  *  *  S  L  S  M  L  C  I  Y  K  Q  C  P  P  K  P  I  L  S  L  V  R  A  E  T  L  V  G  R  T  R  L  K  T  R  K  S  L  N  N  L  F  F  S  *  R  *  Y  S  D  Q  I  V  D  F  M  Y  M  L  S  F  T  S  T  G  R  E  E  L  T  K  S  *  I  N  E  V  V  F  *  F  V  N  E  I  </first_frame>
            <second_frame>  T  C  *  T   : G  P  T  S  K  *  T  W  K  I  H  L  W  H  A  R  I  C  P  I  G  A  W  S  I  C  G  G  K  R  S  C  K  E  R  L  *  D  *  *  *  R  C  L  D  T  P  C   : C  I  H  T  I  G  G  M  L  R  F  V  I  W  K  V  I  R  P  W  K  K  *  E  M  F  M  I  K  T  S  G  K  S  W  K  E  L  M  P  V  *  P  K :   C  T  *  M  L  L  V  C  Y  S  G  Y  I  Y  E  V  G  L  I  Y  L  G  T  V  *  R  S  *  L  I  V  *  Q  I  K :   H  S  G  I  L  N  G  T  W  M  Y  W  C  Y  G  P  Y  P  I  Q  A  K  F  L  K  Q  K  S  Y  S  R  V  *  S  P   : E  F  L  P  *  P  R  K  N  E  N  I  C  K  E  L  C  C :   L  Q  K  C  Y  S  N  M  V  R  V  K  M  N  G  H  W  N  C  S  D  K  H  L  M  P  L  T  T  R :   L  L  E  H  Q  T  S  S  L  M  F  L  M  K  F  G  S  L  C  C  *  T  V  V  G  L  Q  K  :  L  L  R  Q  *  R  C  S  *  K  R  G  K  E  P  R  S  C  G  A  S  W :   K  K  V  I  H  Q  C  Q  E  T  K  K  L  Y  K  Q  A  K  K  L  S  H  W  K  V  H  T  S  T  N  L  G  K  R  M  I  T  I  Q  N  K  L  F  C  T  P  L  K  C  *  *  F  S  P  L  V  S  L  S  S  S  R  M  C  S  K  V  S  P  C  C  V  F  I  S  S  V  P  P  S  Q  F  Y  R  W  *  G  R  R  H  L  *  G  E  Q  D  S  K  L  G  S  P  *  I  I  S  F  F  H  N  G  D  I  Q  I  R  L  L  I  S  C  T  C  Y  L  S  P  A  Q  V  E  K  N  L  Q  N  L  E  *  M  K  *  Y  F  D  L  S  M  K  * </second_frame>
            <third_frame>   L  V  E  Q  :  V  L  P  V  N  K  H  G  R  Y  I  Y  G  M  L  A  F  A  L  L  E  L  G  R  Y  A  E  A  K  E  A  A  K  K  G  F  E  I  D  S  E  D  A  W  T  H  H  A  :  V  Y  T  Q  L  V  A  C  C  A  L  L  Y  G  R  S  F  A  H  G  K  S  K  R  C  L  *  S  K  H  L  E  R  V  G  K  N  *  C  Q  F  S  R   : S  V  L  E  C  C  W  F  V  T  P  G  I  F  T  R  W  D  *  Y  I  W  G  P  F  K  D  P  S  *  S  S  D  R  *   : S  I  L  V  S  *  M  A  P  G  C  I  G  V  M  G  P  I  L  Y  R  R  S  F  *  S  R  R  V  T  R  G  F  E  V  Q  :  N  F  Y  H  D  Q  E  K  T  R  I  Y  A  K  S  C  A   : A  C  R  S  V  I  R  I  W  *  G  *  K  *  T  G  I  G  I  A  R  T  N  I  *  C  H  *  L  Q   : D  Y  W  S  I  R  R  A  A  *  C  F  *  *  S  L  D  H  Y  V  A  K  Q  W  S  G  Y  K  S :   Y  *  G  N  R  D  A  A  K  K  E  G  R  N  P  V  L  V  A  P  P   : G  K  R  L  F  I  N  V  K  K  P  R  S  Y  T  S  R  Q  K  S  S  V  I  G  R  C  I  L  Q  L  I  L  A  K  G  *  *  L  S  K  I  N  S  F  A  H  L  S  N  V  S  D  F  H  L  L  Y  P  S  P  L  V  E  C  V  V  K  S  L  H  V  V  Y  L  *  A  V  S  P  Q  A  N  S  I  V  G  E  G  G  D  T  C  R  E  N  K  T  Q  N  S  E  V  L  K  *  S  L  F  F  I  T  V  I  F  R  S  D  C  *  F  H  V  H  V  I  F  H  Q  H  R  *  R  R  T  Y  K  I  L  N  K  *  S  S  I  L  I  C  Q  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79619" stop="79489"/>
                    <exon start="78748" stop="78619"/>
                    <exon start="78541" stop="78437"/>
                    <exon start="77889" stop="77783"/>
                    <exon start="77708" stop="77657"/>
                    <exon start="77060" stop="76971"/>
                    <exon start="76877" stop="76793"/>
                    <exon start="76392" stop="76328"/>
                    <exon start="75532" stop="75443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INMEDTFMACSHLPYWSLVDMRRQKKLQRKALRLIVKMPGHTMLYTHNWWHVALCYMEGHSPMEKVRDVYDQNIWKELERIDASLAEVYLNAVGLLLRVYLRGGINIFGDRLKILADRLTDKAFWYLEWHLDVLVLWALSYTGEVSKAEELLEGLKSRISTMTKKKREYMQRAVLLAEVLFEYGKGENERALELLGQTFDAIDYKIIGASDEQLDVFNEVWITMLLNSGRATKAIEAIEMQLKKREGTPFLWRLLEKGYSSMSRNQEAIQAGKKAQSLEGAYFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81222" e_stop="81113"/>
            <exon e_start="80977" e_stop="80658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81222" e_stop="81113" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81112" i_stop="80978" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="80977" e_stop="80658" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81222" stop="81113"/>
              <exon start="80977" stop="80658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCACCAACTTCAAGAAAATGGAAGAATTCAAAGTAGACAAATGGGGTTATCAAGTGAAGACTAGTTCTGATTCTTGCATATCTGCCATTAATTCTTATTATCATCAG : GTACTTAGCTATGGAAGAGAGAGGTCAGTTATATTGGAAGCTCCAAAACAAGACCCAACTTGTGTTTTGGCTAATATTTTGGCTGCTCATTTTCTTTGTTCTGCTGATTCTTCGCGTGCTATGCCACTTCTTGAAGCTGCCAAGTCTTGTCTAGTACAAATTTTGCAACTTTTTGGTTTGTATTTTTGTATTTGGGAGTTTGGTTTTGCTTATTTGTTGTTAATTTTCTTTGTTTAGGAACAAGCTAGCTTGTATGAGAAAGTGGTTTTTGAGGTAGTAAGTTATTTGATTTTACCTAATAGAGATGATGATGTGGCTGT</gDNA_template>
            <first_frame> N  P  P  T  S  R  K  W  K  N  S  K  *  T  N  G  V  I  K  *  R  L  V  L  I  L  A  Y  L  P  L  I  L  I  I  I  R :   Y  L  A  M  E  E  R  G  Q  L  Y  W  K  L  Q  N  K  T  Q  L  V  F  W  L  I  F  W  L  L  I  F  F  V  L  L  I  L  R  V  L  C  H  F  L  K  L  P  S  L  V  *  Y  K  F  C  N  F  L  V  C  I  F  V  F  G  S  L  V  L  L  I  C  C  *  F  S  L  F  R  N  K  L  A  C  M  R  K  W  F  L  R  *  *  V  I  *  F  Y  L  I  E  M  M  M  W  L  </first_frame>
            <second_frame>  T  H  Q  L  Q  E  N  G  R  I  Q  S  R  Q  M  G  L  S  S  E  D  *  F  *  F  L  H  I  C  H  *  F  L  L  S  S   : G  T  *  L  W  K  R  E  V  S  Y  I  G  S  S  K  T  R  P  N  L  C  F  G  *  Y  F  G  C  S  F  S  L  F  C  *  F  F  A  C  Y  A  T  S  *  S  C  Q  V  L  S  S  T  N  F  A  T  F  W  F  V  F  L  Y  L  G  V  W  F  C  L  F  V  V  N  F  L  C  L  G  T  S  *  L  V  *  E  S  G  F  *  G  S  K  L  F  D  F  T  *  *  R  *  *  C  G  C </second_frame>
            <third_frame>   P  T  N  F  K  K  M  E  E  F  K  V  D  K  W  G  Y  Q  V  K  T  S  S  D  S  C  I  S  A  I  N  S  Y  Y  H  Q  :  V  L  S  Y  G  R  E  R  S  V  I  L  E  A  P  K  Q  D  P  T  C  V  L  A  N  I  L  A  A  H  F  L  C  S  A  D  S  S  R  A  M  P  L  L  E  A  A  K  S  C  L  V  Q  I  L  Q  L  F  G  L  Y  F  C  I  W  E  F  G  F  A  Y  L  L  L  I  F  F  V  *  E  Q  A  S  L  Y  E  K  V  V  F  E  V  V  S  Y  L  I  L  P  N  R  D  D  D  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81220" stop="81113"/>
                    <exon start="80977" stop="80741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTNFKKMEEFKVDKWGYQVKTSSDSCISAINSYYHQVLSYGRERSVILEAPKQDPTCVLANILAAHFLCSADSSRAMPLLEAAKSCLVQILQLFGLYFCIWEFGFAYLLLIFFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84789" PGL_stop="83764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84789" e_stop="84406"/>
            <exon e_start="84160" e_stop="83764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84789" e_stop="84406" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="84405" i_stop="84161" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="84160" e_stop="83764" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84789" stop="84406"/>
              <exon start="84160" stop="83996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84786" stop="84406"/>
              <exon start="84160" stop="84027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84784" stop="84406"/>
              <exon start="84160" stop="84078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84773" stop="84406"/>
              <exon start="84160" stop="83764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84772" stop="84406"/>
              <exon start="84160" stop="84045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84718" stop="84406"/>
              <exon start="84160" stop="83966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGAAGCATCAAAAACTCTGCTTATTAGTCATTCTTTCAATATTTGTTGTTGAAGAAGCTAGTCATGGCAACAAATAGTGTAAAGCTTCTAGGTACATGGGCATGCCCGTATGTGTATCGCGTTGAAATAGCCCTCAAGATGAAGTCTATTGAGTATGAGTTTATACAAGAACGTGTGTTTAACAAAAGTGAGTTGCTTCTCAAATCCAATCCTGTTTACAAGAAAATCCCAGTTCTGTTCCACGACGAGAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGCTTGGCTTAATGGTCCCGCCATTCTTCCTTCTGATCCCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG : TGGTATCCATTGGTAGCGGATTATAGGAACGTGGAAGGAAAGGAAGCAAAAGCAGCTATGGTGGAGAAAATTTCTGAAGGGACTTTGCTGCTGGAGGAAGCTTTTATCAACATGAGCAAAGGTAAATCTTACTTTGGTGGAGATAGTATTGGTTATGTTGACATTGTTTTTGGTAGTTTACTCGGATGGGTTAAGGTAATCGAGATCGTGGATGAATTGAAGATACTAGACGAAACAAAGACGCCTAGCCTAGCTGAATGGGATGAGAAATTTTGCTCGCACAATGTCGTAAAGGATATCATTCCAGAGACTGAAAAACTTGTGGAAATTTATCACAAGTATGTCGAGTTGAAGAAAGCTAACTTGAGTTGATAATGTTGCTGATTTTTCTTTATCT</gDNA_template>
            <first_frame> A  R  S  I  K  N  S  A  Y  *  S  F  F  Q  Y  L  L  L  K  K  L  V  M  A  T  N  S  V  K  L  L  G  T  W  A  C  P  Y  V  Y  R  V  E  I  A  L  K  M  K  S  I  E  Y  E  F  I  Q  E  R  V  F  N  K  S  E  L  L  L  K  S  N  P  V  Y  K  K  I  P  V  L  F  H  D  E  K  P  I  C  E  S  L  V  I  L  Q  Y  I  D  E  A  W  L  N  G  P  A  I  L  P  S  D  P  Y  D  R  A  I  A  R  F  W  A  A  Y  I  D  E  K  :  W  Y  P  L  V  A  D  Y  R  N  V  E  G  K  E  A  K  A  A  M  V  E  K  I  S  E  G  T  L  L  L  E  E  A  F  I  N  M  S  K  G  K  S  Y  F  G  G  D  S  I  G  Y  V  D  I  V  F  G  S  L  L  G  W  V  K  V  I  E  I  V  D  E  L  K  I  L  D  E  T  K  T  P  S  L  A  E  W  D  E  K  F  C  S  H  N  V  V  K  D  I  I  P  E  T  E  K  L  V  E  I  Y  H  K  Y  V  E  L  K  K  A  N  L  S  *  *  C  C  *  F  F  F  I  </first_frame>
            <second_frame>  Q  E  A  S  K  T  L  L  I  S  H  S  F  N  I  C  C  *  R  S  *  S  W  Q  Q  I  V  *  S  F  *  V  H  G  H  A  R  M  C  I  A  L  K  *  P  S  R  *  S  L  L  S  M  S  L  Y  K  N  V  C  L  T  K  V  S  C  F  S  N  P  I  L  F  T  R  K  S  Q  F  C  S  T  T  R  S  L  S  V  S  P  L  S  S  F  S  T  S  M  K  L  G  L  M  V  P  P  F  F  L  L  I  P  M  I  V  P  *  H  D  F  G  Q  P  I  *  M  K  S :   G  I  H  W  *  R  I  I  G  T  W  K  E  R  K  Q  K  Q  L  W  W  R  K  F  L  K  G  L  C  C  W  R  K  L  L  S  T  *  A  K  V  N  L  T  L  V  E  I  V  L  V  M  L  T  L  F  L  V  V  Y  S  D  G  L  R  *  S  R  S  W  M  N  *  R  Y  *  T  K  Q  R  R  L  A  *  L  N  G  M  R  N  F  A  R  T  M  S  *  R  I  S  F  Q  R  L  K  N  L  W  K  F  I  T  S  M  S  S  *  R  K  L  T  *  V  D  N  V  A  D  F  S  L  S </second_frame>
            <third_frame>   K  K  H  Q  K  L  C  L  L  V  I  L  S  I  F  V  V  E  E  A  S  H  G  N  K  *  C  K  A  S  R  Y  M  G  M  P  V  C  V  S  R  *  N  S  P  Q  D  E  V  Y  *  V  *  V  Y  T  R  T  C  V  *  Q  K  *  V  A  S  Q  I  Q  S  C  L  Q  E  N  P  S  S  V  P  R  R  E  A  Y  L  *  V  P  C  H  P  S  V  H  R  *  S  L  A  *  W  S  R  H  S  S  F  *  S  L  *  S  C  H  S  T  I  L  G  S  L  Y  R  *  K   : V  V  S  I  G  S  G  L  *  E  R  G  R  K  G  S  K  S  S  Y  G  G  E  N  F  *  R  D  F  A  A  G  G  S  F  Y  Q  H  E  Q  R  *  I  L  L  W  W  R  *  Y  W  L  C  *  H  C  F  W  *  F  T  R  M  G  *  G  N  R  D  R  G  *  I  E  D  T  R  R  N  K  D  A  *  P  S  *  M  G  *  E  I  L  L  A  Q  C  R  K  G  Y  H  S  R  D  *  K  T  C  G  N  L  S  Q  V  C  R  V  E  E  S  *  L  E  L  I  M  L  L  I  F  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84759" stop="84406"/>
                    <exon start="84160" stop="83789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFQYLLLKKLVMATNSVKLLGTWACPYVYRVEIALKMKSIEYEFIQERVFNKSELLLKSNPVYKKIPVLFHDEKPICESLVILQYIDEAWLNGPAILPSDPYDRAIARFWAAYIDEKWYPLVADYRNVEGKEAKAAMVEKISEGTLLLEEAFINMSKGKSYFGGDSIGYVDIVFGSLLGWVKVIEIVDELKILDETKTPSLAEWDEKFCSHNVVKDIIPETEKLVEIYHKYVELKKANLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="87267" PGL_stop="85510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87267" e_stop="86956"/>
            <exon e_start="86033" e_stop="85510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87267" e_stop="86956" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86955" i_stop="86034" i_length="922"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86033" e_stop="85510" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87267" stop="86956"/>
              <exon start="86033" stop="85980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87266" stop="86956"/>
              <exon start="86033" stop="85710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87261" stop="86956"/>
              <exon start="86033" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87258" stop="86956"/>
              <exon start="86033" stop="85514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87248" stop="86956"/>
              <exon start="86033" stop="85510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87245" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGATGTGAAACTATTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAG : TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</gDNA_template>
            <first_frame> N  D  V  K  L  L  G  S  W  P  S  T  F  V  M  R  P  R  I  A  L  N  V  K  S  V  C  Y  D  F  L  E  E  Q  L  S  S  K  S  D  L  L  L  I  S  N  P  V  Y  K  K  I  P  V  L  I  H  D  G  K  S  I  C  E  S  L  N  I  V  Q  Y  I  D  E  K  W  T  N  S  G  P  S  I  L  P  L  D  P  Y  D  R  A  I  A  R  F  W  A  C  Y  I  D  D  K  :  W  F  P  L  F  R  S  F  A  V  A  Q  G  E  D  A  I  K  T  A  L  E  P  V  F  D  G  L  V  L  L  E  D  A  F  K  N  C  S  K  G  K  K  F  F  G  G  D  K  I  G  Y  V  D  I  A  L  G  C  F  L  G  W  M  R  V  I  E  K  M  N  N  V  T  L  L  D  E  A  K  T  P  G  L  Y  N  W  A  E  D  F  C  A  D  S  S  V  K  D  V  M  P  E  T  N  K  L  A  E  A  A  K  N  L  I  P  K  I  R  A  N  A  S  S  *  I  H  T  P  R  L  A  Y  E  A  S  I  S  I  L  N  L  *  S  L  A  K  T  I  Y  G  N  N  I  W  Y  C  V  K  N  Y  *  E  M  S  T  M  K  P  R  S  T  I  Y   </first_frame>
            <second_frame>  M  M  *  N  Y  *  D  H  G  L  V  H  L  L  *  G  L  V  S  R  L  T  *  N  Q  C  V  M  I  S  W  R  N  S  *  V  L  R  V  I  F  S  L  Y  Q  I  Q  F  T  R  K  F  Q  F  *  F  M  M  G  S  P  F  V  N  H  S  T  L  F  S  I  L  M  K  N  G  L  I  L  V  P  L  F  S  P  W  I  L  M  I  V  P  L  L  D  F  G  H  V  I  L  T  I  S :   G  F  H  Y  S  V  P  L  R  L  P  K  E  R  M  P  *  K  Q  H  *  S  Q  C  S  T  V  W  C  C  W  K  T  P  S  R  I  A  A  K  E  R  S  S  L  A  E  T  K  L  D  T  W  T  L  H  L  D  A  S  *  V  G  *  G  *  S  R  R  *  T  T  S  H  Y  L  M  K  P  R  L  Q  V  Y  T  I  G  L  K  I  F  V  L  I  V  L  S  K  M  S  C  L  K  L  I  S  L  L  R  L  L  R  T  L  Y  P  K  S  E  L  M  H  L  A  K  S  T  R  H  V  *  P  M  K  P  R  Y  L  F  L  I  S  K  V  *  L  R  P  Y  M  E  I  T  F  G  I  V  *  K  T  T  K  K  *  V  L  *  S  Q  D  L  L  F  I  </second_frame>
            <third_frame>   *  C  E  T  I  R  I  M  A  *  Y  I  C  Y  E  A  S  Y  R  A  *  R  K  I  S  V  L  *  F  L  G  G  T  V  K  F  *  E  *  S  S  P  Y  I  K  S  S  L  Q  E  N  S  S  S  N  S  *  W  E  V  H  L  *  I  T  Q  H  C  S  V  Y  *  *  K  M  D  *  F  W  S  L  Y  S  P  L  G  S  L  *  S  C  H  C  S  I  L  G  M  L  Y  *  R  *   : V  V  S  I  I  P  F  L  C  G  C  P  R  R  G  C  H  K  N  S  T  R  A  S  V  R  R  S  G  V  V  G  R  R  L  Q  E  L  Q  Q  R  K  E  V  L  W  R  R  Q  N  W  I  R  G  H  C  T  W  M  L  L  R  L  D  E  G  D  R  E  D  E  Q  R  H  T  T  *  *  S  Q  D  S  R  F  I  Q  L  G  *  R  F  L  C  *  *  F  C  Q  R  C  H  A  *  N  *  *  A  C  *  G  C  *  E  P  Y  T  Q  N  Q  S  *  C  I  *  L  N  P  H  A  T  F  S  L  *  S  L  D  I  Y  S  *  S  L  K  S  S  *  D  H  I  W  K  *  H  L  V  L  C  K  K  L  L  R  N  E  Y  Y  E  A  K  I  Y  Y  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87267" stop="86956"/>
                    <exon start="86033" stop="85659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDVKLLGSWPSTFVMRPRIALNVKSVCYDFLEEQLSSKSDLLLISNPVYKKIPVLIHDGKSICESLNIVQYIDEKWTNSGPSILPLDPYDRAIARFWACYIDDKWFPLFRSFAVAQGEDAIKTALEPVFDGLVLLEDAFKNCSKGKKFFGGDKIGYVDIALGCFLGWMRVIEKMNNVTLLDEAKTPGLYNWAEDFCADSSVKDVMPETNKLAEAAKNLIPKIRANASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87252" e_stop="86940"/>
            <exon e_start="86033" e_stop="85510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.239" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87252" e_stop="86940" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.239" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86939" i_stop="86034" i_length="906"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86033" e_stop="85510" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87252" stop="86940"/>
              <exon start="86033" stop="85535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87248" stop="86940"/>
              <exon start="86033" stop="85939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87245" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87162" stop="86940"/>
              <exon start="86033" stop="85510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGATCATGGCCTAGTACATTTGTTATGAGGCCTCGTATCGCGCTTAACGTAAAATCAGTGTGTTATGATTTCTTGGAGGAACAGTTAAGTTCTAAGAGTGATCTTCTCCTTATATCAAATCCAGTTTACAAGAAAATTCCAGTTCTAATTCATGATGGGAAGTCCATTTGTGAATCACTCAACATTGTTCAGTATATTGATGAAAAATGGACTAATTCTGGTCCCTCTATTCTCCCCTTGGATCCTTATGATCGTGCCATTGCTCGATTTTGGGCATGTTATATTGACGATAAGGTACACATCTCTCTTT : TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</gDNA_template>
            <first_frame> L  G  S  W  P  S  T  F  V  M  R  P  R  I  A  L  N  V  K  S  V  C  Y  D  F  L  E  E  Q  L  S  S  K  S  D  L  L  L  I  S  N  P  V  Y  K  K  I  P  V  L  I  H  D  G  K  S  I  C  E  S  L  N  I  V  Q  Y  I  D  E  K  W  T  N  S  G  P  S  I  L  P  L  D  P  Y  D  R  A  I  A  R  F  W  A  C  Y  I  D  D  K  V  H  I  S  L   : L  V  S  I  I  P  F  L  C  G  C  P  R  R  G  C  H  K  N  S  T  R  A  S  V  R  R  S  G  V  V  G  R  R  L  Q  E  L  Q  Q  R  K  E  V  L  W  R  R  Q  N  W  I  R  G  H  C  T  W  M  L  L  R  L  D  E  G  D  R  E  D  E  Q  R  H  T  T  *  *  S  Q  D  S  R  F  I  Q  L  G  *  R  F  L  C  *  *  F  C  Q  R  C  H  A  *  N  *  *  A  C  *  G  C  *  E  P  Y  T  Q  N  Q  S  *  C  I  *  L  N  P  H  A  T  F  S  L  *  S  L  D  I  Y  S  *  S  L  K  S  S  *  D  H  I  W  K  *  H  L  V  L  C  K  K  L  L  R  N  E  Y  Y  E  A  K  I  Y  Y  L  * </first_frame>
            <second_frame>  *  D  H  G  L  V  H  L  L  *  G  L  V  S  R  L  T  *  N  Q  C  V  M  I  S  W  R  N  S  *  V  L  R  V  I  F  S  L  Y  Q  I  Q  F  T  R  K  F  Q  F  *  F  M  M  G  S  P  F  V  N  H  S  T  L  F  S  I  L  M  K  N  G  L  I  L  V  P  L  F  S  P  W  I  L  M  I  V  P  L  L  D  F  G  H  V  I  L  T  I  R  Y  T  S  L  F  :  W  F  P  L  F  R  S  F  A  V  A  Q  G  E  D  A  I  K  T  A  L  E  P  V  F  D  G  L  V  L  L  E  D  A  F  K  N  C  S  K  G  K  K  F  F  G  G  D  K  I  G  Y  V  D  I  A  L  G  C  F  L  G  W  M  R  V  I  E  K  M  N  N  V  T  L  L  D  E  A  K  T  P  G  L  Y  N  W  A  E  D  F  C  A  D  S  S  V  K  D  V  M  P  E  T  N  K  L  A  E  A  A  K  N  L  I  P  K  I  R  A  N  A  S  S  *  I  H  T  P  R  L  A  Y  E  A  S  I  S  I  L  N  L  *  S  L  A  K  T  I  Y  G  N  N  I  W  Y  C  V  K  N  Y  *  E  M  S  T  M  K  P  R  S  T  I  Y   </second_frame>
            <third_frame>   R  I  M  A  *  Y  I  C  Y  E  A  S  Y  R  A  *  R  K  I  S  V  L  *  F  L  G  G  T  V  K  F  *  E  *  S  S  P  Y  I  K  S  S  L  Q  E  N  S  S  S  N  S  *  W  E  V  H  L  *  I  T  Q  H  C  S  V  Y  *  *  K  M  D  *  F  W  S  L  Y  S  P  L  G  S  L  *  S  C  H  C  S  I  L  G  M  L  Y  *  R  *  G  T  H  L  S  F :   G  F  H  Y  S  V  P  L  R  L  P  K  E  R  M  P  *  K  Q  H  *  S  Q  C  S  T  V  W  C  C  W  K  T  P  S  R  I  A  A  K  E  R  S  S  L  A  E  T  K  L  D  T  W  T  L  H  L  D  A  S  *  V  G  *  G  *  S  R  R  *  T  T  S  H  Y  L  M  K  P  R  L  Q  V  Y  T  I  G  L  K  I  F  V  L  I  V  L  S  K  M  S  C  L  K  L  I  S  L  L  R  L  L  R  T  L  Y  P  K  S  E  L  M  H  L  A  K  S  T  R  H  V  *  P  M  K  P  R  Y  L  F  L  I  S  K  V  *  L  R  P  Y  M  E  I  T  F  G  I  V  *  K  T  T  K  K  *  V  L  *  S  Q  D  L  L  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87252" stop="86940"/>
                    <exon start="86033" stop="85804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSWPSTFVMRPRIALNVKSVCYDFLEEQLSSKSDLLLISNPVYKKIPVLIHDGKSICESLNIVQYIDEKWTNSGPSILPLDPYDRAIARFWACYIDDKVHISLLVSIIPFLCGCPRRGCHKNSTRASVRRSGVVGRRLQELQQRKEVLWRRQNWIRGHCTWMLLRLDEGDREDEQRHTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87101" stop="86940"/>
                    <exon start="86033" stop="85659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMMGSPFVNHSTLFSILMKNGLILVPLFSPWILMIVPLLDFGHVILTIRYTSLFWFPLFRSFAVAQGEDAIKTALEPVFDGLVLLEDAFKNCSKGKKFFGGDKIGYVDIALGCFLGWMRVIEKMNNVTLLDEAKTPGLYNWAEDFCADSSVKDVMPETNKLAEAAKNLIPKIRANASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="86650" e_stop="86346"/>
            <exon e_start="86033" e_stop="85510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86650" e_stop="86346" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86345" i_stop="86034" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86033" e_stop="85510" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86650" stop="86346"/>
              <exon start="86033" stop="85515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86649" stop="86346"/>
              <exon start="86033" stop="85801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86490" stop="86346"/>
              <exon start="86033" stop="85510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTAAAGCTTCTAGGTTCATGGGCAAGCCCGTTTGTGAACCGCGTTGAACTAGCTCTCAAGATAAAGTCTATTGAGTATGAGTTTATACAACAAAATATGATAAACAAAGGTGAGTTGCTCCTTAAATCCAACCCTGTATACGAGAAAATCCCCGTCCTGATCCATGACGAAAAGCCTATCTGTGAGTCCCTTGTCATCCTTCAGTACATCGATGAAGTTTGGATTAATGATCCCCCGGTTCTTCCGTTTGATCTCTATGATCGTGCCATAGCACGATTTTGGGCAGCCTATATAGATGAAAAG : TGGTTTCCATTATTCCGTTCCTTTGCGGTTGCCCAAGGAGAGGATGCCATAAAAACAGCACTAGAGCCAGTGTTCGACGGTCTGGTGTTGTTGGAAGACGCCTTCAAGAATTGCAGCAAAGGAAAGAAGTTCTTTGGCGGAGACAAAATTGGATACGTGGACATTGCACTTGGATGCTTCTTAGGTTGGATGAGGGTGATCGAGAAGATGAACAACGTCACACTACTTGATGAAGCCAAGACTCCAGGTTTATACAATTGGGCTGAAGATTTTTGTGCTGATAGTTCTGTCAAAGATGTCATGCCTGAAACTAATAAGCTTGCTGAGGCTGCTAAGAACCTTATACCCAAAATCAGAGCTAATGCATCTAGCTAAATCCACACGCCACGTTTAGCCTATGAAGCCTCGATATCTATTCTTAATCTCTAAAGTCTAGCTAAGACCATATATGGAAATAACATTTGGTATTGTGTAAAAAACTACTAAGAAATGAGTACTATGAAGCCAAGATCTACTATTTATAG</gDNA_template>
            <first_frame> V  *  S  F  *  V  H  G  Q  A  R  L  *  T  A  L  N  *  L  S  R  *  S  L  L  S  M  S  L  Y  N  K  I  *  *  T  K  V  S  C  S  L  N  P  T  L  Y  T  R  K  S  P  S  *  S  M  T  K  S  L  S  V  S  P  L  S  S  F  S  T  S  M  K  F  G  L  M  I  P  R  F  F  R  L  I  S  M  I  V  P  *  H  D  F  G  Q  P  I  *  M  K  S :   G  F  H  Y  S  V  P  L  R  L  P  K  E  R  M  P  *  K  Q  H  *  S  Q  C  S  T  V  W  C  C  W  K  T  P  S  R  I  A  A  K  E  R  S  S  L  A  E  T  K  L  D  T  W  T  L  H  L  D  A  S  *  V  G  *  G  *  S  R  R  *  T  T  S  H  Y  L  M  K  P  R  L  Q  V  Y  T  I  G  L  K  I  F  V  L  I  V  L  S  K  M  S  C  L  K  L  I  S  L  L  R  L  L  R  T  L  Y  P  K  S  E  L  M  H  L  A  K  S  T  R  H  V  *  P  M  K  P  R  Y  L  F  L  I  S  K  V  *  L  R  P  Y  M  E  I  T  F  G  I  V  *  K  T  T  K  K  *  V  L  *  S  Q  D  L  L  F  I  </first_frame>
            <second_frame>  C  K  A  S  R  F  M  G  K  P  V  C  E  P  R  *  T  S  S  Q  D  K  V  Y  *  V  *  V  Y  T  T  K  Y  D  K  Q  R  *  V  A  P  *  I  Q  P  C  I  R  E  N  P  R  P  D  P  *  R  K  A  Y  L  *  V  P  C  H  P  S  V  H  R  *  S  L  D  *  *  S  P  G  S  S  V  *  S  L  *  S  C  H  S  T  I  L  G  S  L  Y  R  *  K   : V  V  S  I  I  P  F  L  C  G  C  P  R  R  G  C  H  K  N  S  T  R  A  S  V  R  R  S  G  V  V  G  R  R  L  Q  E  L  Q  Q  R  K  E  V  L  W  R  R  Q  N  W  I  R  G  H  C  T  W  M  L  L  R  L  D  E  G  D  R  E  D  E  Q  R  H  T  T  *  *  S  Q  D  S  R  F  I  Q  L  G  *  R  F  L  C  *  *  F  C  Q  R  C  H  A  *  N  *  *  A  C  *  G  C  *  E  P  Y  T  Q  N  Q  S  *  C  I  *  L  N  P  H  A  T  F  S  L  *  S  L  D  I  Y  S  *  S  L  K  S  S  *  D  H  I  W  K  *  H  L  V  L  C  K  K  L  L  R  N  E  Y  Y  E  A  K  I  Y  Y  L  * </second_frame>
            <third_frame>   V  K  L  L  G  S  W  A  S  P  F  V  N  R  V  E  L  A  L  K  I  K  S  I  E  Y  E  F  I  Q  Q  N  M  I  N  K  G  E  L  L  L  K  S  N  P  V  Y  E  K  I  P  V  L  I  H  D  E  K  P  I  C  E  S  L  V  I  L  Q  Y  I  D  E  V  W  I  N  D  P  P  V  L  P  F  D  L  Y  D  R  A  I  A  R  F  W  A  A  Y  I  D  E  K  :  W  F  P  L  F  R  S  F  A  V  A  Q  G  E  D  A  I  K  T  A  L  E  P  V  F  D  G  L  V  L  L  E  D  A  F  K  N  C  S  K  G  K  K  F  F  G  G  D  K  I  G  Y  V  D  I  A  L  G  C  F  L  G  W  M  R  V  I  E  K  M  N  N  V  T  L  L  D  E  A  K  T  P  G  L  Y  N  W  A  E  D  F  C  A  D  S  S  V  K  D  V  M  P  E  T  N  K  L  A  E  A  A  K  N  L  I  P  K  I  R  A  N  A  S  S  *  I  H  T  P  R  L  A  Y  E  A  S  I  S  I  L  N  L  *  S  L  A  K  T  I  Y  G  N  N  I  W  Y  C  V  K  N  Y  *  E  M  S  T  M  K  P  R  S  T  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86648" stop="86346"/>
                    <exon start="86033" stop="85659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLLGSWASPFVNRVELALKIKSIEYEFIQQNMINKGELLLKSNPVYEKIPVLIHDEKPICESLVILQYIDEVWINDPPVLPFDLYDRAIARFWAAYIDEKWFPLFRSFAVAQGEDAIKTALEPVFDGLVLLEDAFKNCSKGKKFFGGDKIGYVDIALGCFLGWMRVIEKMNNVTLLDEAKTPGLYNWAEDFCADSSVKDVMPETNKLAEAAKNLIPKIRANASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="89356" PGL_stop="87716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89356" e_stop="89029"/>
            <exon e_start="88048" e_stop="87716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.936"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="89356" e_stop="89029" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89028" i_stop="88049" i_length="980"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="88048" e_stop="87716" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89356" stop="89029"/>
              <exon start="88048" stop="87716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89321" stop="89029"/>
              <exon start="88048" stop="87930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTATGGCTAAAAATAATTTGAAAATATTAGGAGCATGGCCTAGTCCATATGTTATGAGGCCTCGTATTGCTCTTAACATCAAATGTTTAGCCTATGATTTCTTAGAAGAACAATTTGGTACAAAAAGTGAACTTTTACTTAAATCAAATCCAATTTACAAAAAAATTCCAGTTCTAATTCATGATGGAAAACCTATTTGTGAATCTTTAATTATTGTTCAATATATCGATGAAAATTGGACTAATTTTGGTCACTCTATTCTTCCTTCTCATCCTTATGATCGTGCCATTGCAAGATTTTGGGCATTTTATATTGATGATAAG : TGGTTTCCAGCACTGTGTGGTGTGGCAGCAGCACAAGACGAGGACGCGAAAAAGGCAGCAATGGAGACTGTGATTGAAGGCCTAGTGTTGTTAGAAGATGTCTTCAAGATTAACAGCAAAGGCAAGAAGTTCTTTGGTGGAGACAAAATCGGATACTTGGACATTGCACTTGGTTGTTTCTTGGGTTGGTTAAAGGTTAACGAGAAGTTGAACAACGTAAATCTCCTTGATGAATCCAGAACTCCGAGTTTATACCAATGGGCTAAAGATTTTTGTGTTGATAGCGTTGTCAAAGATGTCATGCCTGAAACTGATCAGCTTGTTCAGGCTGCA</gDNA_template>
            <first_frame> F  Y  Y  G  *  K  *  F  E  N  I  R  S  M  A  *  S  I  C  Y  E  A  S  Y  C  S  *  H  Q  M  F  S  L  *  F  L  R  R  T  I  W  Y  K  K  *  T  F  T  *  I  K  S  N  L  Q  K  N  S  S  S  N  S  *  W  K  T  Y  L  *  I  F  N  Y  C  S  I  Y  R  *  K  L  D  *  F  W  S  L  Y  S  S  F  S  S  L  *  S  C  H  C  K  I  L  G  I  L  Y  *  *  *   : V  V  S  S  T  V  W  C  G  S  S  T  R  R  G  R  E  K  G  S  N  G  D  C  D  *  R  P  S  V  V  R  R  C  L  Q  D  *  Q  Q  R  Q  E  V  L  W  W  R  Q  N  R  I  L  G  H  C  T  W  L  F  L  G  L  V  K  G  *  R  E  V  E  Q  R  K  S  P  *  *  I  Q  N  S  E  F  I  P  M  G  *  R  F  L  C  *  *  R  C  Q  R  C  H  A  *  N  *  S  A  C  S  G  C  </first_frame>
            <second_frame>  F  I  M  A  K  N  N  L  K  I  L  G  A  W  P  S  P  Y  V  M  R  P  R  I  A  L  N  I  K  C  L  A  Y  D  F  L  E  E  Q  F  G  T  K  S  E  L  L  L  K  S  N  P  I  Y  K  K  I  P  V  L  I  H  D  G  K  P  I  C  E  S  L  I  I  V  Q  Y  I  D  E  N  W  T  N  F  G  H  S  I  L  P  S  H  P  Y  D  R  A  I  A  R  F  W  A  F  Y  I  D  D  K  :  W  F  P  A  L  C  G  V  A  A  A  Q  D  E  D  A  K  K  A  A  M  E  T  V  I  E  G  L  V  L  L  E  D  V  F  K  I  N  S  K  G  K  K  F  F  G  G  D  K  I  G  Y  L  D  I  A  L  G  C  F  L  G  W  L  K  V  N  E  K  L  N  N  V  N  L  L  D  E  S  R  T  P  S  L  Y  Q  W  A  K  D  F  C  V  D  S  V  V  K  D  V  M  P  E  T  D  Q  L  V  Q  A  A </second_frame>
            <third_frame>   L  L  W  L  K  I  I  *  K  Y  *  E  H  G  L  V  H  M  L  *  G  L  V  L  L  L  T  S  N  V  *  P  M  I  S  *  K  N  N  L  V  Q  K  V  N  F  Y  L  N  Q  I  Q  F  T  K  K  F  Q  F  *  F  M  M  E  N  L  F  V  N  L  *  L  L  F  N  I  S  M  K  I  G  L  I  L  V  T  L  F  F  L  L  I  L  M  I  V  P  L  Q  D  F  G  H  F  I  L  M  I  S :   G  F  Q  H  C  V  V  W  Q  Q  H  K  T  R  T  R  K  R  Q  Q  W  R  L  *  L  K  A  *  C  C  *  K  M  S  S  R  L  T  A  K  A  R  S  S  L  V  E  T  K  S  D  T  W  T  L  H  L  V  V  S  W  V  G  *  R  L  T  R  S  *  T  T  *  I  S  L  M  N  P  E  L  R  V  Y  T  N  G  L  K  I  F  V  L  I  A  L  S  K  M  S  C  L  K  L  I  S  L  F  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89355" stop="89029"/>
                    <exon start="88048" stop="87716"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIMAKNNLKILGAWPSPYVMRPRIALNIKCLAYDFLEEQFGTKSELLLKSNPIYKKIPVLIHDGKPICESLIIVQYIDENWTNFGHSILPSHPYDRAIARFWAFYIDDKWFPALCGVAAAQDEDAKKAAMETVIEGLVLLEDVFKINSKGKKFFGGDKIGYLDIALGCFLGWLKVNEKLNNVNLLDESRTPSLYQWAKDFCVDSVVKDVMPETDQLVQAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90267" PGL_stop="90961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90267" e_stop="90278"/>
            <exon e_start="90608" e_stop="90961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="90267" e_stop="90278" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90279" i_stop="90607" i_length="329"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="90608" e_stop="90961" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90267" stop="90278"/>
              <exon start="90608" stop="90961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227996" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGTTTTTG : ATTTTTGAATTTTACAGTTAGATATATAGAATGGACTGAAATGTTGTGTTCAAAAATGTATGAAAAGTTTAAAATTAAAGAATTGCATAAAGACTAAAAAGAAAGTCAACCAAAAAAAATTAAAACTAAAAATTATATTATAAGCAGCCATGCCAATACCATTCTGTTGTTGCAGAGTTAAGTGCTAATGGGACTGCACCAAATCCATCATTGGTTGGTTTTTCACTCATTTGTGTACTTAAACAGCCAATCTTTGTTGGTCTGGTTCCTTCGAGCTTATACCAGCTCTGATACCATGTTGAATTACGTTACCACCTCCATTTCAAAAGGTTTCATTGCAAGCACCATATGTTG</gDNA_template>
            <first_frame> I  M  F  L  :  I  F  E  F  Y  S  *  I  Y  R  M  D  *  N  V  V  F  K  N  V  *  K  V  *  N  *  R  I  A  *  R  L  K  R  K  S  T  K  K  N  *  N  *  K  L  Y  Y  K  Q  P  C  Q  Y  H  S  V  V  A  E  L  S  A  N  G  T  A  P  N  P  S  L  V  G  F  S  L  I  C  V  L  K  Q  P  I  F  V  G  L  V  P  S  S  L  Y  Q  L  *  Y  H  V  E  L  R  Y  H  L  H  F  K  R  F  H  C  K  H  H  M  L </first_frame>
            <second_frame>  L  C  F  * :   F  L  N  F  T  V  R  Y  I  E  W  T  E  M  L  C  S  K  M  Y  E  K  F  K  I  K  E  L  H  K  D  *  K  E  S  Q  P  K  K  I  K  T  K  N  Y  I  I  S  S  H  A  N  T  I  L  L  L  Q  S  *  V  L  M  G  L  H  Q  I  H  H  W  L  V  F  H  S  F  V  Y  L  N  S  Q  S  L  L  V  W  F  L  R  A  Y  T  S  S  D  T  M  L  N  Y  V  T  T  S  I  S  K  G  F  I  A  S  T  I  C   </second_frame>
            <third_frame>   Y  V  F   : D  F  *  I  L  Q  L  D  I  *  N  G  L  K  C  C  V  Q  K  C  M  K  S  L  K  L  K  N  C  I  K  T  K  K  K  V  N  Q  K  K  L  K  L  K  I  I  L  *  A  A  M  P  I  P  F  C  C  C  R  V  K  C  *  W  D  C  T  K  S  I  I  G  W  F  F  T  H  L  C  T  *  T  A  N  L  C  W  S  G  S  F  E  L  I  P  A  L  I  P  C  *  I  T  L  P  P  P  F  Q  K  V  S  L  Q  A  P  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0037H06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="91310" PGL_stop="90623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91310" e_stop="90623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="91310" e_stop="90623" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91310" stop="90623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91219" stop="90623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACATGCTCCATCCATAGTTTCCTCCTTTTGTGATGATGTCAACTTCTTCATACTGATCCTGCATGATTCAAATGATTTTCAGAAACTCACGTCAAGATACCAGGTAGCATGTTATGTCTGTTGACAAGATCTTAACCAACAGAGATATAATAGGTCTCAACAAAAATGAGATTGTCAATGAACCTGGCCAACATCTGCACAGATGAATTTCGAAGGCCTTTCTGAATCAAAGCTACAGCGCCAAGGGTCTCTCAGTCCAAACGCCCAGATTTCAGGCTGCAAATCCTTATTTTGTGAATAAGGATTATCTCGAGGAACCGAATAGTTACCCCAATGTCCAAGGTCTGCAACATATGGTGCTTGCAATGAAACCTTTTGAAATGGAGGTGGTAACGTAATTCAACATGGTATCAGAGCTGGTATAAGCTCGAAGGAACCAGACCAACAAAGATTGGCTGTTTAAGTACACAAATGAGTGAAAAACCAACCAATGATGGATTTGGTGCAGTCCCATTAGCACTTAACTCTGCAACAACAGAATGGTATTGGCATGGCTGCTTATAATATAATTTTTAGTTTTAATTTTTTTTGGTTGACTTTCTTTTTAGTCTTTATGCAATTCTTTAATTTTAAACTTTTCATACATTTTTGAACACAACATTTCAGTCCATTCTATATATCTAACT</gDNA_template>
            <first_frame> I  H  A  P  S  I  V  S  S  F  C  D  D  V  N  F  F  I  L  I  L  H  D  S  N  D  F  Q  K  L  T  S  R  Y  Q  V  A  C  Y  V  C  *  Q  D  L  N  Q  Q  R  Y  N  R  S  Q  Q  K  *  D  C  Q  *  T  W  P  T  S  A  Q  M  N  F  E  G  L  S  E  S  K  L  Q  R  Q  G  S  L  S  P  N  A  Q  I  S  G  C  K  S  L  F  C  E  *  G  L  S  R  G  T  E  *  L  P  Q  C  P  R  S  A  T  Y  G  A  C  N  E  T  F  *  N  G  G  G  N  V  I  Q  H  G  I  R  A  G  I  S  S  K  E  P  D  Q  Q  R  L  A  V  *  V  H  K  *  V  K  N  Q  P  M  M  D  L  V  Q  S  H  *  H  L  T  L  Q  Q  Q  N  G  I  G  M  A  A  Y  N  I  I  F  S  F  N  F  F  W  L  T  F  F  L  V  F  M  Q  F  F  N  F  K  L  F  I  H  F  *  T  Q  H  F  S  P  F  Y  I  S  N  </first_frame>
            <second_frame>  Y  M  L  H  P  *  F  P  P  F  V  M  M  S  T  S  S  Y  *  S  C  M  I  Q  M  I  F  R  N  S  R  Q  D  T  R  *  H  V  M  S  V  D  K  I  L  T  N  R  D  I  I  G  L  N  K  N  E  I  V  N  E  P  G  Q  H  L  H  R  *  I  S  K  A  F  L  N  Q  S  Y  S  A  K  G  L  S  V  Q  T  P  R  F  Q  A  A  N  P  Y  F  V  N  K  D  Y  L  E  E  P  N  S  Y  P  N  V  Q  G  L  Q  H  M  V  L  A  M  K  P  F  E  M  E  V  V  T  *  F  N  M  V  S  E  L  V  *  A  R  R  N  Q  T  N  K  D  W  L  F  K  Y  T  N  E  *  K  T  N  Q  *  W  I  W  C  S  P  I  S  T  *  L  C  N  N  R  M  V  L  A  W  L  L  I  I  *  F  L  V  L  I  F  F  G  *  L  S  F  *  S  L  C  N  S  L  I  L  N  F  S  Y  I  F  E  H  N  I  S  V  H  S  I  Y  L  T </second_frame>
            <third_frame>   T  C  S  I  H  S  F  L  L  L  *  *  C  Q  L  L  H  T  D  P  A  *  F  K  *  F  S  E  T  H  V  K  I  P  G  S  M  L  C  L  L  T  R  S  *  P  T  E  I  *  *  V  S  T  K  M  R  L  S  M  N  L  A  N  I  C  T  D  E  F  R  R  P  F  *  I  K  A  T  A  P  R  V  S  Q  S  K  R  P  D  F  R  L  Q  I  L  I  L  *  I  R  I  I  S  R  N  R  I  V  T  P  M  S  K  V  C  N  I  W  C  L  Q  *  N  L  L  K  W  R  W  *  R  N  S  T  W  Y  Q  S  W  Y  K  L  E  G  T  R  P  T  K  I  G  C  L  S  T  Q  M  S  E  K  P  T  N  D  G  F  G  A  V  P  L  A  L  N  S  A  T  T  E  W  Y  W  H  G  C  L  *  Y  N  F  *  F  *  F  F  L  V  D  F  L  F  S  L  Y  A  I  L  *  F  *  T  F  H  T  F  L  N  T  T  F  Q  S  I  L  Y  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05SLm0037H06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="92370" PGL_stop="91320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92370" e_stop="92205"/>
            <exon e_start="91955" e_stop="91558"/>
            <exon e_start="91459" e_stop="91320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92370" e_stop="92205" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92204" i_stop="91956" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="91955" e_stop="91558" e_length="398"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91557" i_stop="91460" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91459" e_stop="91320" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92370" stop="92205"/>
              <exon start="91955" stop="91798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91933" stop="91558"/>
              <exon start="91459" stop="91320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTTTCAGGAGAAGATAAATTGTTGATCGTGCAATCAATTTAACTTTAAATTTAAGTCAAAAGCAGTAGTAATCAAGTATCTATTCTGATCAAGTTTGTTTTTCAATCACCTATCAACTGAAGCTAAGTTAATTCTTTGGTGGGGAAATTGATGTTGCTTTGAG : TGCAATGGCTACAGGATGAAGCTAGTCAAAAGCAGCAGACAGTAAAGAACAAGGACCGAGCAGAGATCTGCTTTAGCAACGTGACCATCTGAAGGTGCAGAGGGACCTGGGCTCTCAGCAGTCCTTGCTATCTCCATCGGGCAAGTGTAGTTGCAGCGACTTGGACGAACCACTCTGTATACACCGGTGCTTGTTAAAACAAAGGTATCCTTCCTGTTATCCTGTCCAAACGAGAATATGCAACCTAAAGCAGGCAATGGACTATTGGGAACTGAGCTGCAATTGAGAGGGGAATCATGAGCACAACTGAAAGAAATGCCTCTTGCTGTAAAGTTCCCACTGTTATACGGATTTTCTTGAGCTGCCCAAAAGTTCTTAGCATACAAATCTCCATAGAG : GGATCAGTCTTGGAGCGATAAACATAGCCACCTGATATGGCTGCACATCCAACTTCTTTATTTATATCAGAATGGCGGTATCCTAACACTGGGAATATGGGATCCTCGAAATCACCAGCTGAAGCATTTTTCAAGCGTGA</gDNA_template>
            <first_frame> S  V  S  G  E  D  K  L  L  I  V  Q  S  I  *  L  *  I  *  V  K  S  S  S  N  Q  V  S  I  L  I  K  F  V  F  Q  S  P  I  N  *  S  *  V  N  S  L  V  G  K  L  M  L  L  *   : V  Q  W  L  Q  D  E  A  S  Q  K  Q  Q  T  V  K  N  K  D  R  A  E  I  C  F  S  N  V  T  I  *  R  C  R  G  T  W  A  L  S  S  P  C  Y  L  H  R  A  S  V  V  A  A  T  W  T  N  H  S  V  Y  T  G  A  C  *  N  K  G  I  L  P  V  I  L  S  K  R  E  Y  A  T  *  S  R  Q  W  T  I  G  N  *  A  A  I  E  R  G  I  M  S  T  T  E  R  N  A  S  C  C  K  V  P  T  V  I  R  I  F  L  S  C  P  K  V  L  S  I  Q  I  S  I  E  :  G  S  V  L  E  R  *  T  *  P  P  D  M  A  A  H  P  T  S  L  F  I  S  E  W  R  Y  P  N  T  G  N  M  G  S  S  K  S  P  A  E  A  F  F  K  R   </first_frame>
            <second_frame>  Q  F  Q  E  K  I  N  C  *  S  C  N  Q  F  N  F  K  F  K  S  K  A  V  V  I  K  Y  L  F  *  S  S  L  F  F  N  H  L  S  T  E  A  K  L  I  L  W  W  G  N  *  C  C  F  E  :  C  N  G  Y  R  M  K  L  V  K  S  S  R  Q  *  R  T  R  T  E  Q  R  S  A  L  A  T  *  P  S  E  G  A  E  G  P  G  L  S  A  V  L  A  I  S  I  G  Q  V  *  L  Q  R  L  G  R  T  T  L  Y  T  P  V  L  V  K  T  K  V  S  F  L  L  S  C  P  N  E  N  M  Q  P  K  A  G  N  G  L  L  G  T  E  L  Q  L  R  G  E  S  *  A  Q  L  K  E  M  P  L  A  V  K  F  P  L  L  Y  G  F  S  *  A  A  Q  K  F  L  A  Y  K  S  P  *  R :   D  Q  S  W  S  D  K  H  S  H  L  I  W  L  H  I  Q  L  L  Y  L  Y  Q  N  G  G  I  L  T  L  G  I  W  D  P  R  N  H  Q  L  K  H  F  S  S  V  </second_frame>
            <third_frame>   S  F  R  R  R  *  I  V  D  R  A  I  N  L  T  L  N  L  S  Q  K  Q  *  *  S  S  I  Y  S  D  Q  V  C  F  S  I  T  Y  Q  L  K  L  S  *  F  F  G  G  E  I  D  V  A  L  S :   A  M  A  T  G  *  S  *  S  K  A  A  D  S  K  E  Q  G  P  S  R  D  L  L  *  Q  R  D  H  L  K  V  Q  R  D  L  G  S  Q  Q  S  L  L  S  P  S  G  K  C  S  C  S  D  L  D  E  P  L  C  I  H  R  C  L  L  K  Q  R  Y  P  S  C  Y  P  V  Q  T  R  I  C  N  L  K  Q  A  M  D  Y  W  E  L  S  C  N  *  E  G  N  H  E  H  N  *  K  K  C  L  L  L  *  S  S  H  C  Y  T  D  F  L  E  L  P  K  S  S  *  H  T  N  L  H  R   : G  I  S  L  G  A  I  N  I  A  T  *  Y  G  C  T  S  N  F  F  I  Y  I  R  M  A  V  S  *  H  W  E  Y  G  I  L  E  I  T  S  *  S  I  F  Q  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91879" stop="91670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRDHLKVQRDLGSQQSLLSPSGKCSCSDLDEPLCIHRCLLKQRYPSCYPVQTRICNLKQAMDYWELSCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="91566" PGL_stop="96425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91566" e_stop="91972"/>
            <exon e_start="92927" e_stop="92980"/>
            <exon e_start="96408" e_stop="96425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-intron don_prob="0.685" acc_prob="0.000" e_score="0.852"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="91566" e_stop="91972" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91973" i_stop="92926" i_length="954"/>
          </intron>
          <exon e_serial="2" e_score="0.852">
            <gDNA_exon_boundary e_start="92927" e_stop="92980" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.685" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92981" i_stop="96407" i_length="3427"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="96408" e_stop="96425" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91566" stop="91972"/>
              <exon start="92927" stop="92980"/>
              <exon start="96408" stop="96425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442465" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTGTATGCTAAGAACTTTTGGGCAGCTCAAGAAAATCCGTATAACAGTGGGAACTTTACAGCAAGAGGCATTTCTTTCAGTTGTGCTCATGATTCCCCTCTCAATTGCAGCTCAGTTCCCAATAGTCCATTGCCTGCTTTAGGTTGCATATTCTCGTTTGGACAGGATAACAGGAAGGATACCTTTGTTTTAACAAGCACCGGTGTATACAGAGTGGTTCGTCCAAGTCGCTGCAACTACACTTGCCCGATGGAGATAGCAAGGACTGCTGAGAGCCCAGGTCCCTCTGCACCTTCAGATGGTCACGTTGCTAAAGCAGATCTCTGCTCGGTCCTTGTTCTTTACTGTCTGCTGCTTTTGACTAGCTTCATCCTGTAGCCATTGCACTGTGATTATGAGATTA : AATTTTTACCTAGCTTGCATGCTTCTTTCTGATCCAAGCGGGATTGTTTTAAAG : AAAAAAAAAAAAAACTCA</gDNA_template>
            <first_frame> R  F  V  C  *  E  L  L  G  S  S  R  K  S  V  *  Q  W  E  L  Y  S  K  R  H  F  F  Q  L  C  S  *  F  P  S  Q  L  Q  L  S  S  Q  *  S  I  A  C  F  R  L  H  I  L  V  W  T  G  *  Q  E  G  Y  L  C  F  N  K  H  R  C  I  Q  S  G  S  S  K  S  L  Q  L  H  L  P  D  G  D  S  K  D  C  *  E  P  R  S  L  C  T  F  R  W  S  R  C  *  S  R  S  L  L  G  P  C  S  L  L  S  A  A  F  D  *  L  H  P  V  A  I  A  L  *  L  *  D  * :   I  F  T  *  L  A  C  F  F  L  I  Q  A  G  L  F  *  R :   K  K  K  K  T   </first_frame>
            <second_frame>  D  L  Y  A  K  N  F  W  A  A  Q  E  N  P  Y  N  S  G  N  F  T  A  R  G  I  S  F  S  C  A  H  D  S  P  L  N  C  S  S  V  P  N  S  P  L  P  A  L  G  C  I  F  S  F  G  Q  D  N  R  K  D  T  F  V  L  T  S  T  G  V  Y  R  V  V  R  P  S  R  C  N  Y  T  C  P  M  E  I  A  R  T  A  E  S  P  G  P  S  A  P  S  D  G  H  V  A  K  A  D  L  C  S  V  L  V  L  Y  C  L  L  L  L  T  S  F  I  L  *  P  L  H  C  D  Y  E  I   : K  F  L  P  S  L  H  A  S  F  *  S  K  R  D  C  F  K   : E  K  K  K  K  L  </second_frame>
            <third_frame>   I  C  M  L  R  T  F  G  Q  L  K  K  I  R  I  T  V  G  T  L  Q  Q  E  A  F  L  S  V  V  L  M  I  P  L  S  I  A  A  Q  F  P  I  V  H  C  L  L  *  V  A  Y  S  R  L  D  R  I  T  G  R  I  P  L  F  *  Q  A  P  V  Y  T  E  W  F  V  Q  V  A  A  T  T  L  A  R  W  R  *  Q  G  L  L  R  A  Q  V  P  L  H  L  Q  M  V  T  L  L  K  Q  I  S  A  R  S  L  F  F  T  V  C  C  F  *  L  A  S  S  C  S  H  C  T  V  I  M  R  L  :  N  F  Y  L  A  C  M  L  L  S  D  P  S  G  I  V  L  K  :  K  K  K  K  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91567" stop="91947"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYAKNFWAAQENPYNSGNFTARGISFSCAHDSPLNCSSVPNSPLPALGCIFSFGQDNRKDTFVLTSTGVYRVVRPSRCNYTCPMEIARTAESPGPSAPSDGHVAKADLCSVLVLYCLLLLTSFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="93601" PGL_stop="92612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93601" e_stop="93194"/>
            <exon e_start="93008" e_stop="92936"/>
            <exon e_start="92635" e_stop="92612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.671" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93601" e_stop="93194" e_length="408"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93193" i_stop="93009" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93008" e_stop="92936" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.671">
            <gDNA_intron_boundary i_start="92935" i_stop="92636" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92635" e_stop="92612" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93601" stop="93194"/>
              <exon start="93008" stop="92936"/>
              <exon start="92635" stop="92612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGGCTTGGTTTTTGCACAAGGAAATGATCAAAAAGGGATTCACTCCGACATTAGAGACTTATCATGCACTCATCAAAGGGTTTTTAAAGAGGAAAAAGTATTCTGAGGCGAAAGAATTGTTTGAAGAGATGAGAAGATATGGTTTATTGGCAGATAAAGAATTTTACTCTATCTTTGCGGATATGAACTATGAACAAGGGAACTTTGATTTGGCGCTTGAGCTTTGTGATGAAGCAGTAGAAAAATGTCTTACAGACAAGACTGATAACAGGAATGCATGATGGTTGTCTGACATGATTCTGCATCCTGTAGCTATTTTTGGAACCAGTGACAAAAAACTAGTTGTCTTGCTCCCAATGATGCTAATCTTTTTCGTGCTGAAGTCAGTTCAAGTTGTGTTACTCT : GGAGGTGAAGGGAGGACCAATGAATCACCTTTAAAACAATCCCGCTTGGATCAGAAAGAAGCATGCAAGCTAG : GTGTCGTGGACTTGGAGTTCTACT</gDNA_template>
            <first_frame> K  R  L  G  F  C  T  R  K  *  S  K  R  D  S  L  R  H  *  R  L  I  M  H  S  S  K  G  F  *  R  G  K  S  I  L  R  R  K  N  C  L  K  R  *  E  D  M  V  Y  W  Q  I  K  N  F  T  L  S  L  R  I  *  T  M  N  K  G  T  L  I  W  R  L  S  F  V  M  K  Q  *  K  N  V  L  Q  T  R  L  I  T  G  M  H  D  G  C  L  T  *  F  C  I  L  *  L  F  L  E  P  V  T  K  N  *  L  S  C  S  Q  *  C  *  S  F  S  C  *  S  Q  F  K  L  C  Y  S  :  G  G  E  G  R  T  N  E  S  P  L  K  Q  S  R  L  D  Q  K  E  A  C  K  L   : G  V  V  D  L  E  F  Y  </first_frame>
            <second_frame>  R  G  L  V  F  A  Q  G  N  D  Q  K  G  I  H  S  D  I  R  D  L  S  C  T  H  Q  R  V  F  K  E  E  K  V  F  *  G  E  R  I  V  *  R  D  E  K  I  W  F  I  G  R  *  R  I  L  L  Y  L  C  G  Y  E  L  *  T  R  E  L  *  F  G  A  *  A  L  *  *  S  S  R  K  M  S  Y  R  Q  D  *  *  Q  E  C  M  M  V  V  *  H  D  S  A  S  C  S  Y  F  W  N  Q  *  Q  K  T  S  C  L  A  P  N  D  A  N  L  F  R  A  E  V  S  S  S  C  V  T  L :   E  V  K  G  G  P  M  N  H  L  *  N  N  P  A  W  I  R  K  K  H  A  S  *  :  V  S  W  T  W  S  S  T </second_frame>
            <third_frame>   E  A  W  F  L  H  K  E  M  I  K  K  G  F  T  P  T  L  E  T  Y  H  A  L  I  K  G  F  L  K  R  K  K  Y  S  E  A  K  E  L  F  E  E  M  R  R  Y  G  L  L  A  D  K  E  F  Y  S  I  F  A  D  M  N  Y  E  Q  G  N  F  D  L  A  L  E  L  C  D  E  A  V  E  K  C  L  T  D  K  T  D  N  R  N  A  *  W  L  S  D  M  I  L  H  P  V  A  I  F  G  T  S  D  K  K  L  V  V  L  L  P  M  M  L  I  F  F  V  L  K  S  V  Q  V  V  L  L   : W  R  *  R  E  D  Q  *  I  T  F  K  T  I  P  L  G  S  E  R  S  M  Q  A  R :   C  R  G  L  G  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93599" stop="93318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAWFLHKEMIKKGFTPTLETYHALIKGFLKRKKYSEAKELFEEMRRYGLLADKEFYSIFADMNYEQGNFDLALELCDEAVEKCLTDKTDNRNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="105605" PGL_stop="104909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105605" e_stop="105590"/>
            <exon e_start="105457" e_stop="104909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.907" e_score="0.875"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.875">
            <gDNA_exon_boundary e_start="105605" e_stop="105590" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.907">
            <gDNA_intron_boundary i_start="105589" i_stop="105458" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="105457" e_stop="104909" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105605" stop="105590"/>
              <exon start="105457" stop="104909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105605" stop="105590"/>
              <exon start="105457" stop="104909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105263" stop="104933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACATAAGCTAAGG : TTGTTTAAGATGGAGGACGTGAGCATGGGAATGTGGGTAGAACAATTCAACAGTTCCAGGCCCGTAGAGTATGTGCATAGCTTGAAGTTCTGTCAGTTTGGGTGCATTGATGATTATTACACTGCACATTATCAATCTCCAAGGCAAATGATCTGCCTGTGGAGAAAGTTGCTGAACCAAGGGAAACCTCAGTGCTGTAATGTGAGATGACAAGGCATACCCTGTCAGCTAGTGTTAGGCAACTCTGAAAAGGAAACGAGACAAGATAGATGCCAAGGCGCGCATACCCTGTTAGCTAGTGTTAGGCAACACGGAAAAGGAAGCGAGACAAGATAAGTTCCTGGGAAGAGCTTGTACATATTGCTCGAGTAAATTAGCCTATCGTGCTATAATTATATTTACTTCATTCATTCTTTTGTTGGGGCGTCAGTCTTGTACCCCAGGCTAGTTGACACGTCAGTCTCGTTAAACTGTATGAAAACAATGACAGCTTAAGCTCTTATATATGAAATTCAAGGGTGAATGGCTCATTTTCAATCTCATTTTGCA</gDNA_template>
            <first_frame> E  T  *  A  K   : V  V  *  D  G  G  R  E  H  G  N  V  G  R  T  I  Q  Q  F  Q  A  R  R  V  C  A  *  L  E  V  L  S  V  W  V  H  *  *  L  L  H  C  T  L  S  I  S  K  A  N  D  L  P  V  E  K  V  A  E  P  R  E  T  S  V  L  *  C  E  M  T  R  H  T  L  S  A  S  V  R  Q  L  *  K  G  N  E  T  R  *  M  P  R  R  A  Y  P  V  S  *  C  *  A  T  R  K  R  K  R  D  K  I  S  S  W  E  E  L  V  H  I  A  R  V  N  *  P  I  V  L  *  L  Y  L  L  H  S  F  F  C  W  G  V  S  L  V  P  Q  A  S  *  H  V  S  L  V  K  L  Y  E  N  N  D  S  L  S  S  Y  I  *  N  S  R  V  N  G  S  F  S  I  S  F  C  </first_frame>
            <second_frame>  K  H  K  L  R  :  L  F  K  M  E  D  V  S  M  G  M  W  V  E  Q  F  N  S  S  R  P  V  E  Y  V  H  S  L  K  F  C  Q  F  G  C  I  D  D  Y  Y  T  A  H  Y  Q  S  P  R  Q  M  I  C  L  W  R  K  L  L  N  Q  G  K  P  Q  C  C  N  V  R  *  Q  G  I  P  C  Q  L  V  L  G  N  S  E  K  E  T  R  Q  D  R  C  Q  G  A  H  T  L  L  A  S  V  R  Q  H  G  K  G  S  E  T  R  *  V  P  G  K  S  L  Y  I  L  L  E  *  I  S  L  S  C  Y  N  Y  I  Y  F  I  H  S  F  V  G  A  S  V  L  Y  P  R  L  V  D  T  S  V  S  L  N  C  M  K  T  M  T  A  *  A  L  I  Y  E  I  Q  G  *  M  A  H  F  Q  S  H  F  A </second_frame>
            <third_frame>   N  I  S  *  G :   C  L  R  W  R  T  *  A  W  E  C  G  *  N  N  S  T  V  P  G  P  *  S  M  C  I  A  *  S  S  V  S  L  G  A  L  M  I  I  T  L  H  I  I  N  L  Q  G  K  *  S  A  C  G  E  S  C  *  T  K  G  N  L  S  A  V  M  *  D  D  K  A  Y  P  V  S  *  C  *  A  T  L  K  R  K  R  D  K  I  D  A  K  A  R  I  P  C  *  L  V  L  G  N  T  E  K  E  A  R  Q  D  K  F  L  G  R  A  C  T  Y  C  S  S  K  L  A  Y  R  A  I  I  I  F  T  S  F  I  L  L  L  G  R  Q  S  C  T  P  G  *  L  T  R  Q  S  R  *  T  V  *  K  Q  *  Q  L  K  L  L  Y  M  K  F  K  G  E  W  L  I  F  N  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05SLm0037H06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105604" stop="105590"/>
                    <exon start="105457" stop="105248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHKLRLFKMEDVSMGMWVEQFNSSRPVEYVHSLKFCQFGCIDDYYTAHYQSPRQMICLWRKLLNQGKPQCCNVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 139 chains have been computed
$ 
$ memory statistics:
$ 284912 bytes spliced alignments in total
$ 84 spliced alignments have been stored
$ 3391 bytes was the average size of a spliced alignment
$ 28152 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1564 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 160 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 20:48:07
-->
